Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09891.t1 | XP_024632961.1 | 85.3 | 536 | 55 | 2 | 1 | 512 | 1 | 536 | 1.40E-267 | 931.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09891.t1 | Q9SZL8 | 28.5 | 470 | 313 | 6 | 32 | 499 | 70 | 518 | 2.3e-56 | 221.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09891.t1 | D3YBB9 | 79.5 | 512 | 105 | 0 | 1 | 512 | 49 | 560 | 1.7e-243 | 851.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene09891.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09891.t1 | MTR_0558s0020 | 87.500 | 296 | 36 | 1 | 1 | 295 | 1 | 296 | 0.0 | 548 |
| MS.gene09891.t1 | MTR_1g083640 | 83.099 | 284 | 32 | 1 | 1 | 268 | 1 | 284 | 6.62e-176 | 496 |
| MS.gene09891.t1 | MTR_8g446020 | 73.898 | 295 | 38 | 1 | 1 | 295 | 1 | 256 | 1.32e-155 | 444 |
| MS.gene09891.t1 | MTR_6g090505 | 83.544 | 237 | 39 | 0 | 65 | 301 | 1 | 237 | 4.07e-146 | 424 |
| MS.gene09891.t1 | MTR_6g090505 | 67.647 | 102 | 6 | 2 | 396 | 495 | 230 | 306 | 9.09e-35 | 134 |
| MS.gene09891.t1 | MTR_2g014100 | 82.449 | 245 | 34 | 1 | 1 | 236 | 1 | 245 | 1.59e-145 | 418 |
| MS.gene09891.t1 | MTR_0337s0040 | 72.308 | 260 | 32 | 2 | 1 | 259 | 1 | 221 | 1.84e-127 | 371 |
| MS.gene09891.t1 | MTR_3g008240 | 84.236 | 203 | 31 | 1 | 1 | 202 | 1 | 203 | 5.55e-121 | 353 |
| MS.gene09891.t1 | MTR_4g040430 | 83.663 | 202 | 29 | 1 | 1 | 202 | 1 | 198 | 8.65e-121 | 353 |
| MS.gene09891.t1 | MTR_5g071590 | 74.444 | 180 | 33 | 2 | 1 | 167 | 1 | 180 | 5.58e-93 | 281 |
| MS.gene09891.t1 | MTR_1g055240 | 88.028 | 142 | 17 | 0 | 91 | 232 | 3 | 144 | 2.08e-89 | 271 |
| MS.gene09891.t1 | MTR_0019s0290 | 82.353 | 153 | 24 | 1 | 84 | 233 | 8 | 160 | 1.69e-88 | 269 |
| MS.gene09891.t1 | MTR_1281s0010 | 82.569 | 109 | 19 | 0 | 19 | 127 | 1 | 109 | 4.90e-59 | 191 |
| MS.gene09891.t1 | MTR_6g051425 | 32.075 | 318 | 185 | 6 | 40 | 341 | 22 | 324 | 1.43e-39 | 147 |
| MS.gene09891.t1 | MTR_0337s0060 | 93.939 | 66 | 4 | 0 | 447 | 512 | 21 | 86 | 1.27e-35 | 133 |
| MS.gene09891.t1 | MTR_4g008820 | 83.750 | 80 | 12 | 1 | 1 | 79 | 125 | 204 | 3.61e-32 | 131 |
| MS.gene09891.t1 | MTR_8g046060 | 77.273 | 88 | 11 | 2 | 1 | 79 | 91 | 178 | 1.46e-31 | 121 |
| MS.gene09891.t1 | MTR_1g070355 | 26.994 | 326 | 213 | 8 | 41 | 362 | 80 | 384 | 1.16e-19 | 92.8 |
| MS.gene09891.t1 | MTR_0402s0040 | 25.405 | 185 | 119 | 4 | 49 | 233 | 40 | 205 | 5.98e-15 | 77.8 |
| MS.gene09891.t1 | MTR_0337s0050 | 75.000 | 36 | 9 | 0 | 259 | 294 | 14 | 49 | 1.34e-13 | 66.6 |
| MS.gene09891.t1 | MTR_4g035820 | 22.414 | 290 | 192 | 7 | 17 | 299 | 61 | 324 | 2.02e-13 | 73.2 |
| MS.gene09891.t1 | MTR_1g013060 | 30.093 | 216 | 132 | 8 | 40 | 253 | 29 | 227 | 4.38e-13 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09891.t1 | AT4G38180 | 28.842 | 475 | 305 | 7 | 32 | 499 | 70 | 518 | 7.61e-62 | 217 |
| MS.gene09891.t1 | AT3G06250 | 26.477 | 491 | 284 | 11 | 34 | 521 | 189 | 605 | 1.81e-42 | 162 |
| MS.gene09891.t1 | AT3G06250 | 26.477 | 491 | 284 | 11 | 34 | 521 | 189 | 605 | 1.81e-42 | 162 |
| MS.gene09891.t1 | AT3G06250 | 26.477 | 491 | 284 | 11 | 34 | 521 | 189 | 605 | 1.81e-42 | 162 |
| MS.gene09891.t1 | AT4G15090 | 25.163 | 461 | 318 | 8 | 50 | 507 | 66 | 502 | 2.08e-41 | 159 |
| MS.gene09891.t1 | AT4G15090 | 25.163 | 461 | 318 | 8 | 50 | 507 | 66 | 502 | 2.08e-41 | 159 |
| MS.gene09891.t1 | AT4G15090 | 25.163 | 461 | 318 | 8 | 50 | 507 | 66 | 502 | 2.08e-41 | 159 |
| MS.gene09891.t1 | AT4G15090 | 25.163 | 461 | 318 | 8 | 50 | 507 | 66 | 502 | 2.08e-41 | 159 |
| MS.gene09891.t1 | AT4G15090 | 25.163 | 461 | 318 | 8 | 50 | 507 | 66 | 502 | 2.08e-41 | 159 |
| MS.gene09891.t1 | AT1G76320 | 26.490 | 453 | 291 | 11 | 50 | 496 | 12 | 428 | 5.69e-41 | 157 |
| MS.gene09891.t1 | AT1G76320 | 26.490 | 453 | 291 | 11 | 50 | 496 | 12 | 428 | 9.86e-41 | 157 |
| MS.gene09891.t1 | AT1G76320 | 26.490 | 453 | 291 | 11 | 50 | 496 | 12 | 428 | 1.04e-40 | 156 |
| MS.gene09891.t1 | AT1G76320 | 26.490 | 453 | 291 | 11 | 50 | 496 | 12 | 428 | 1.04e-40 | 156 |
| MS.gene09891.t1 | AT2G27110 | 25.506 | 494 | 305 | 11 | 10 | 499 | 29 | 463 | 9.69e-39 | 151 |
| MS.gene09891.t1 | AT2G27110 | 25.506 | 494 | 305 | 11 | 10 | 499 | 29 | 463 | 9.69e-39 | 151 |
| MS.gene09891.t1 | AT4G38170 | 28.623 | 276 | 186 | 4 | 235 | 507 | 24 | 291 | 2.48e-38 | 148 |
| MS.gene09891.t1 | AT2G27110 | 29.758 | 289 | 195 | 3 | 213 | 499 | 36 | 318 | 7.81e-38 | 148 |
| MS.gene09891.t1 | AT5G18960 | 25.249 | 503 | 298 | 13 | 24 | 521 | 200 | 629 | 1.07e-37 | 148 |
| MS.gene09891.t1 | AT5G18960 | 25.249 | 503 | 298 | 13 | 24 | 521 | 200 | 629 | 1.07e-37 | 148 |
| MS.gene09891.t1 | AT1G10240 | 26.292 | 445 | 290 | 13 | 49 | 482 | 62 | 479 | 6.81e-37 | 145 |
| MS.gene09891.t1 | AT1G10240 | 26.292 | 445 | 290 | 13 | 49 | 482 | 62 | 479 | 6.81e-37 | 145 |
| MS.gene09891.t1 | AT5G28530 | 26.304 | 441 | 281 | 12 | 40 | 462 | 60 | 474 | 1.24e-36 | 144 |
| MS.gene09891.t1 | AT5G28530 | 26.304 | 441 | 281 | 12 | 40 | 462 | 60 | 474 | 1.24e-36 | 144 |
| MS.gene09891.t1 | AT5G28530 | 26.304 | 441 | 281 | 12 | 40 | 462 | 60 | 474 | 1.25e-36 | 144 |
| MS.gene09891.t1 | AT3G22170 | 22.338 | 479 | 331 | 9 | 34 | 507 | 69 | 511 | 1.30e-34 | 139 |
| MS.gene09891.t1 | AT3G22170 | 22.338 | 479 | 331 | 9 | 34 | 507 | 69 | 511 | 1.30e-34 | 139 |
| MS.gene09891.t1 | AT1G80010 | 25.641 | 468 | 299 | 15 | 41 | 493 | 101 | 534 | 2.68e-32 | 132 |
| MS.gene09891.t1 | AT2G32250 | 24.145 | 497 | 300 | 12 | 4 | 495 | 10 | 434 | 4.72e-32 | 131 |
| MS.gene09891.t1 | AT2G32250 | 24.145 | 497 | 300 | 12 | 4 | 495 | 10 | 434 | 6.83e-32 | 130 |
| MS.gene09891.t1 | AT2G32250 | 24.145 | 497 | 300 | 12 | 4 | 495 | 10 | 434 | 6.83e-32 | 130 |
| MS.gene09891.t1 | AT2G32250 | 24.145 | 497 | 300 | 12 | 4 | 495 | 10 | 434 | 7.57e-32 | 130 |
| MS.gene09891.t1 | AT2G32250 | 24.145 | 497 | 300 | 12 | 4 | 495 | 10 | 434 | 7.57e-32 | 130 |
| MS.gene09891.t1 | AT2G32250 | 24.145 | 497 | 300 | 12 | 4 | 495 | 10 | 434 | 7.57e-32 | 130 |
| MS.gene09891.t1 | AT2G32250 | 24.169 | 451 | 268 | 10 | 50 | 495 | 12 | 393 | 4.69e-31 | 128 |
| MS.gene09891.t1 | AT2G32250 | 24.169 | 451 | 268 | 10 | 50 | 495 | 12 | 393 | 4.72e-31 | 128 |
| MS.gene09891.t1 | AT1G52520 | 23.371 | 445 | 304 | 9 | 41 | 484 | 91 | 499 | 1.68e-28 | 120 |
| MS.gene09891.t1 | AT4G19990 | 28.731 | 268 | 184 | 4 | 219 | 483 | 163 | 426 | 4.70e-28 | 119 |
| MS.gene09891.t1 | AT4G19990 | 28.731 | 268 | 184 | 4 | 219 | 483 | 106 | 369 | 4.71e-28 | 119 |
| MS.gene09891.t1 | AT4G19990 | 28.731 | 268 | 184 | 4 | 219 | 483 | 177 | 440 | 5.04e-28 | 119 |
| MS.gene09891.t1 | AT4G19990 | 28.731 | 268 | 184 | 4 | 219 | 483 | 163 | 426 | 5.65e-28 | 119 |
| MS.gene09891.t1 | AT4G19990 | 28.731 | 268 | 184 | 4 | 219 | 483 | 163 | 426 | 5.65e-28 | 119 |
| MS.gene09891.t1 | AT4G19990 | 28.731 | 268 | 184 | 4 | 219 | 483 | 163 | 426 | 7.52e-28 | 118 |
| MS.gene09891.t1 | AT4G19990 | 28.731 | 268 | 184 | 4 | 219 | 483 | 163 | 426 | 7.52e-28 | 118 |
| MS.gene09891.t1 | AT5G28530 | 22.970 | 431 | 245 | 15 | 40 | 462 | 60 | 411 | 4.66e-17 | 84.7 |
| MS.gene09891.t1 | AT5G28530 | 22.970 | 431 | 245 | 15 | 40 | 462 | 60 | 411 | 5.06e-17 | 84.7 |
Find 71 sgRNAs with CRISPR-Local
Find 144 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATGCTGAGTTGGACTTTA+AGG | 0.133287 | 7.3:-13131300 | MS.gene09891:CDS |
| TTTCGATGAGTTAACTAATT+TGG | 0.156761 | 7.3:-13131609 | MS.gene09891:CDS |
| CTTTAGTCATTTCAACATTA+TGG | 0.194287 | 7.3:-13131342 | MS.gene09891:CDS |
| CAACAAGATTATGCTCTATT+TGG | 0.198611 | 7.3:-13132393 | MS.gene09891:CDS |
| TTCATTTCAGCTGCCTTTCT+TGG | 0.201003 | 7.3:-13131890 | MS.gene09891:intron |
| CATCGTAAGAGTGTGTTATT+TGG | 0.276792 | 7.3:-13131857 | MS.gene09891:CDS |
| TATGGTTTGAGGTTTCTTAT+TGG | 0.280533 | 7.3:+13131763 | None:intergenic |
| AATCAGATTTCGACTACAAT+TGG | 0.318540 | 7.3:-13131568 | MS.gene09891:CDS |
| ACCAGCCTGGTCTGTGTATA+TGG | 0.341000 | 7.3:+13131745 | None:intergenic |
| GCCGATATTTATTGTTTGTT+CGG | 0.341758 | 7.3:+13132343 | None:intergenic |
| TATGCATTGGTCTTCAGTTT+GGG | 0.370760 | 7.3:-13131468 | MS.gene09891:CDS |
| AACAATAAATATCGGCCATT+AGG | 0.388497 | 7.3:-13132336 | MS.gene09891:intron |
| ACCGAACAAACAATAAATAT+CGG | 0.389395 | 7.3:-13132344 | MS.gene09891:CDS |
| GTATGCATTGGTCTTCAGTT+TGG | 0.392120 | 7.3:-13131469 | MS.gene09891:CDS |
| TTCTCATACTCAACAAGAAC+TGG | 0.395633 | 7.3:+13132873 | None:intergenic |
| TAAAGAATCATGGAAGTCTT+TGG | 0.408500 | 7.3:-13133102 | MS.gene09891:CDS |
| ATAACACTGGATTCTCTGTT+AGG | 0.417808 | 7.3:-13133031 | MS.gene09891:CDS |
| CGTTATGTTTGTAACAAAGA+AGG | 0.427485 | 7.3:-13132948 | MS.gene09891:CDS |
| CGAGAAGTAAATGAAGTTCA+AGG | 0.430014 | 7.3:-13132696 | MS.gene09891:CDS |
| AGCTGGAATATATTTGAAGT+TGG | 0.433136 | 7.3:-13132814 | MS.gene09891:CDS |
| TGGTCTGTGTATATGGTTTG+AGG | 0.447350 | 7.3:+13131752 | None:intergenic |
| GAAAGGGTTGGTTGTAAAGC+TGG | 0.447509 | 7.3:-13132831 | MS.gene09891:CDS |
| GCTTTAATAAATTCTAAAGC+TGG | 0.450264 | 7.3:-13132666 | MS.gene09891:CDS |
| ATCTGAGAGTGGACAATTGA+CGG | 0.452529 | 7.3:-13133177 | MS.gene09891:CDS |
| TGGTCTTTGCTCATGGCACA+TGG | 0.452802 | 7.3:-13131678 | MS.gene09891:CDS |
| GGCCTACTTCGGACTTTAAG+TGG | 0.458978 | 7.3:-13131514 | MS.gene09891:CDS |
| ACAAAATAAGAAATCGGATA+AGG | 0.469178 | 7.3:-13132982 | MS.gene09891:CDS |
| GAAGTGATGGGTCAAGGAGT+TGG | 0.484292 | 7.3:-13132621 | MS.gene09891:CDS |
| TTACAACCAACCCTTTCCTC+TGG | 0.485330 | 7.3:+13132837 | None:intergenic |
| TTTAATTATGCATATAACAC+TGG | 0.485542 | 7.3:-13133044 | MS.gene09891:CDS |
| TCTAATGACAACTCGTCAAA+AGG | 0.488137 | 7.3:-13132553 | MS.gene09891:CDS |
| CTCAAGTAGCACAAATGCTC+TGG | 0.489977 | 7.3:+13132726 | None:intergenic |
| CAATTCACAAAATAAGAAAT+CGG | 0.490263 | 7.3:-13132988 | MS.gene09891:CDS |
| ATGATTGTCAAAACCAAGAA+AGG | 0.491378 | 7.3:+13131877 | None:intergenic |
| ATCAGATTTCGACTACAATT+GGG | 0.491708 | 7.3:-13131567 | MS.gene09891:CDS |
| CGTCAAAAGGAGATGGTGGC+TGG | 0.492100 | 7.3:-13132540 | MS.gene09891:CDS |
| ACATTATGGTTCAGAGAATG+AGG | 0.494022 | 7.3:-13131328 | MS.gene09891:CDS |
| GACCGCATAAGCTGACTGTT+GGG | 0.496307 | 7.3:+13131248 | None:intergenic |
| GAGAACATCTTATGAAGTGA+TGG | 0.499875 | 7.3:-13132634 | MS.gene09891:CDS |
| TGTCTTCTGCAGCATCAACT+TGG | 0.502977 | 7.3:+13132448 | None:intergenic |
| AAATGCTCTGGTTTATGTAA+TGG | 0.504865 | 7.3:+13132738 | None:intergenic |
| CTCATTCAAATCGTATGCAT+TGG | 0.507227 | 7.3:-13131481 | MS.gene09891:CDS |
| TTTAAGTCCGAAAATCGAAA+AGG | 0.508080 | 7.3:+13132582 | None:intergenic |
| GAGGGATAATCATGCTGAGT+TGG | 0.508852 | 7.3:-13131309 | MS.gene09891:CDS |
| ATTGGTCTTCAGTTTGGGTG+AGG | 0.509410 | 7.3:-13131463 | MS.gene09891:CDS |
| TGTCTATAAGATATATAAGT+GGG | 0.514682 | 7.3:-13132778 | MS.gene09891:CDS |
| TAAAGAATCGAACAAGTGAA+TGG | 0.519618 | 7.3:+13131360 | None:intergenic |
| TAACAAAGAAGGTTTCAAGA+AGG | 0.525236 | 7.3:-13132937 | MS.gene09891:CDS |
| AATCGAACAAGTGAATGGTC+TGG | 0.540971 | 7.3:+13131365 | None:intergenic |
| AACAAAGAAGGTTTCAAGAA+GGG | 0.545537 | 7.3:-13132936 | MS.gene09891:CDS |
| CATTTAGTGATAAAGAATCA+TGG | 0.546005 | 7.3:-13133112 | MS.gene09891:CDS |
| ACTTCAACAACGCACCAGCC+TGG | 0.557139 | 7.3:+13131732 | None:intergenic |
| AATGAAGCTCTCTCGAAACC+AGG | 0.565261 | 7.3:-13132486 | MS.gene09891:CDS |
| TGAAAATTCAGTTATTGATG+CGG | 0.565546 | 7.3:-13133153 | MS.gene09891:CDS |
| GTGATGGGTCAAGGAGTTGG+AGG | 0.568802 | 7.3:-13132618 | MS.gene09891:CDS |
| ATGTCTATAAGATATATAAG+TGG | 0.572287 | 7.3:-13132779 | MS.gene09891:CDS |
| GGACCGCATAAGCTGACTGT+TGG | 0.579264 | 7.3:+13131247 | None:intergenic |
| ATATTAACTTCATCTGAGAG+TGG | 0.588105 | 7.3:-13133188 | MS.gene09891:CDS |
| TCTTATGAAGTGATGGGTCA+AGG | 0.589029 | 7.3:-13132627 | MS.gene09891:CDS |
| ACCATATACACAGACCAGGC+TGG | 0.590176 | 7.3:-13131746 | MS.gene09891:CDS |
| GACAACTCGTCAAAAGGAGA+TGG | 0.599038 | 7.3:-13132547 | MS.gene09891:CDS |
| AGAACATCTTATGAAGTGAT+GGG | 0.601988 | 7.3:-13132633 | MS.gene09891:CDS |
| AACTCGTCAAAAGGAGATGG+TGG | 0.603142 | 7.3:-13132544 | MS.gene09891:CDS |
| ATCCCAACAGTCAGCTTATG+CGG | 0.606153 | 7.3:-13131250 | MS.gene09891:intron |
| AGAACTGGACTGTCACATGT+TGG | 0.620791 | 7.3:+13132888 | None:intergenic |
| AGCCACTTAAAGTCCGAAGT+AGG | 0.621799 | 7.3:+13131512 | None:intergenic |
| GGGTCAAGGAGTTGGAGGCA+CGG | 0.621882 | 7.3:-13132613 | MS.gene09891:CDS |
| GGTCTTTGCTCATGGCACAT+GGG | 0.639768 | 7.3:-13131677 | MS.gene09891:CDS |
| CATTATGGTTCAGAGAATGA+GGG | 0.643278 | 7.3:-13131327 | MS.gene09891:CDS |
| GATTTCAGCTTATCGACAGA+CGG | 0.644926 | 7.3:+13130777 | None:intergenic |
| TCAAACCATATACACAGACC+AGG | 0.671057 | 7.3:-13131750 | MS.gene09891:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGTCTATAAGATATATAAG+TGG | - | chr7.3:13131199-13131218 | MS.gene09891:intron | 20.0% |
| !! | CAATTCACAAAATAAGAAAT+CGG | - | chr7.3:13130990-13131009 | MS.gene09891:intron | 20.0% |
| !! | TGTCTATAAGATATATAAGT+GGG | - | chr7.3:13131200-13131219 | MS.gene09891:intron | 20.0% |
| !! | TTTAATTATGCATATAACAC+TGG | - | chr7.3:13130934-13130953 | MS.gene09891:intron | 20.0% |
| !!! | AATTTAATGTTCTGGTTTAT+GGG | - | chr7.3:13131817-13131836 | MS.gene09891:CDS | 20.0% |
| !!! | ATGATGAAAAACTGTTTTAA+TGG | - | chr7.3:13132439-13132458 | MS.gene09891:CDS | 20.0% |
| !!! | TGAATGTTTATATTGATTGA+AGG | - | chr7.3:13131789-13131808 | MS.gene09891:CDS | 20.0% |
| ! | AAAACACCTTGAAAAACATT+CGG | + | chr7.3:13132277-13132296 | None:intergenic | 25.0% |
| ! | ACAAAATAAGAAATCGGATA+AGG | - | chr7.3:13130996-13131015 | MS.gene09891:intron | 25.0% |
| ! | ACCGAACAAACAATAAATAT+CGG | - | chr7.3:13131634-13131653 | MS.gene09891:CDS | 25.0% |
| ! | AGTACAAAATACTAACCTAA+TGG | + | chr7.3:13131660-13131679 | None:intergenic | 25.0% |
| ! | CATAATAGTATTTGAAGGAA+AGG | + | chr7.3:13132810-13132829 | None:intergenic | 25.0% |
| ! | CATTTAGTGATAAAGAATCA+TGG | - | chr7.3:13130866-13130885 | MS.gene09891:intron | 25.0% |
| ! | CTTTAGTCATTTCAACATTA+TGG | - | chr7.3:13132636-13132655 | MS.gene09891:CDS | 25.0% |
| ! | TGAAAATTCAGTTATTGATG+CGG | - | chr7.3:13130825-13130844 | MS.gene09891:intron | 25.0% |
| ! | TGAAATTTGAATGAATGTTC+TGG | - | chr7.3:13131707-13131726 | MS.gene09891:CDS | 25.0% |
| ! | TGAATAAATGAAAAGCAAGA+TGG | + | chr7.3:13132775-13132794 | None:intergenic | 25.0% |
| ! | TTCCTTCAAATACTATTATG+AGG | - | chr7.3:13132810-13132829 | MS.gene09891:CDS | 25.0% |
| ! | TTTCGATGAGTTAACTAATT+TGG | - | chr7.3:13132369-13132388 | MS.gene09891:CDS | 25.0% |
| !! | AGGTTTAGAATTTAATGTTC+TGG | - | chr7.3:13131809-13131828 | MS.gene09891:CDS | 25.0% |
| !! | TGTTGTATTTTGTTCTGATT+TGG | - | chr7.3:13132065-13132084 | MS.gene09891:intron | 25.0% |
| !!! | ATGTTGATAATGATAATGAG+AGG | - | chr7.3:13132911-13132930 | MS.gene09891:CDS | 25.0% |
| !!! | CTTATTTTGTGAATTGTTCT+TGG | + | chr7.3:13130986-13131005 | None:intergenic | 25.0% |
| !!! | GAATTTAATGTTCTGGTTTA+TGG | - | chr7.3:13131816-13131835 | MS.gene09891:CDS | 25.0% |
| !!! | GCTTTAATAAATTCTAAAGC+TGG | - | chr7.3:13131312-13131331 | MS.gene09891:CDS | 25.0% |
| !!! | TGAAAAACTGTTTTAATGGA+AGG | - | chr7.3:13132443-13132462 | MS.gene09891:CDS | 25.0% |
| !!! | TGTTGATAATGATAATGAGA+GGG | - | chr7.3:13132912-13132931 | MS.gene09891:CDS | 25.0% |
| AAACACATATGATCTTTCCA+TGG | + | chr7.3:13131880-13131899 | None:intergenic | 30.0% | |
| AACAAAGAAGGTTTCAAGAA+GGG | - | chr7.3:13131042-13131061 | MS.gene09891:intron | 30.0% | |
| AACAATAAATATCGGCCATT+AGG | - | chr7.3:13131642-13131661 | MS.gene09891:CDS | 30.0% | |
| AATCAGATTTCGACTACAAT+TGG | - | chr7.3:13132410-13132429 | MS.gene09891:CDS | 30.0% | |
| AGAACATCTTATGAAGTGAT+GGG | - | chr7.3:13131345-13131364 | MS.gene09891:CDS | 30.0% | |
| ATATTAACTTCATCTGAGAG+TGG | - | chr7.3:13130790-13130809 | MS.gene09891:CDS | 30.0% | |
| ATCAGATTTCGACTACAATT+GGG | - | chr7.3:13132411-13132430 | MS.gene09891:CDS | 30.0% | |
| ATGATTGTCAAAACCAAGAA+AGG | + | chr7.3:13132104-13132123 | None:intergenic | 30.0% | |
| ATTATGATCTTCAAACCTTG+GGG | + | chr7.3:13132983-13133002 | None:intergenic | 30.0% | |
| CAACAAGATTATGCTCTATT+TGG | - | chr7.3:13131585-13131604 | MS.gene09891:CDS | 30.0% | |
| CGTTATGTTTGTAACAAAGA+AGG | - | chr7.3:13131030-13131049 | MS.gene09891:intron | 30.0% | |
| CTCCTCATAATAGTATTTGA+AGG | + | chr7.3:13132815-13132834 | None:intergenic | 30.0% | |
| CTGGTATATGTGTGTTAATT+TGG | - | chr7.3:13131746-13131765 | MS.gene09891:CDS | 30.0% | |
| CTTCAAATACTATTATGAGG+AGG | - | chr7.3:13132813-13132832 | MS.gene09891:CDS | 30.0% | |
| GAGAATGCAAAGAAAAATCT+CGG | - | chr7.3:13132325-13132344 | MS.gene09891:intron | 30.0% | |
| GATTATGATCTTCAAACCTT+GGG | + | chr7.3:13132984-13133003 | None:intergenic | 30.0% | |
| GCCGATATTTATTGTTTGTT+CGG | + | chr7.3:13131638-13131657 | None:intergenic | 30.0% | |
| TAAAGAAAAACCAGAGGAAA+GGG | - | chr7.3:13131131-13131150 | MS.gene09891:intron | 30.0% | |
| TAAAGAATCATGGAAGTCTT+TGG | - | chr7.3:13130876-13130895 | MS.gene09891:intron | 30.0% | |
| TAAAGAATCGAACAAGTGAA+TGG | + | chr7.3:13132621-13132640 | None:intergenic | 30.0% | |
| TAACAAAGAAGGTTTCAAGA+AGG | - | chr7.3:13131041-13131060 | MS.gene09891:intron | 30.0% | |
| TGGATATCATAGTAAAAACC+TGG | + | chr7.3:13131513-13131532 | None:intergenic | 30.0% | |
| TGGTGTATACTTGTTTACTA+CGG | + | chr7.3:13132755-13132774 | None:intergenic | 30.0% | |
| TTTAAGTCCGAAAATCGAAA+AGG | + | chr7.3:13131399-13131418 | None:intergenic | 30.0% | |
| TTTCTATTTACACAGCACAA+TGG | - | chr7.3:13132024-13132043 | MS.gene09891:intron | 30.0% | |
| ! | AAATGCTCTGGTTTATGTAA+TGG | + | chr7.3:13131243-13131262 | None:intergenic | 30.0% |
| ! | AGCTGGAATATATTTGAAGT+TGG | - | chr7.3:13131164-13131183 | MS.gene09891:intron | 30.0% |
| ! | CAAAGTTTTCACAATTGAGA+AGG | - | chr7.3:13132870-13132889 | MS.gene09891:CDS | 30.0% |
| ! | GAATCTTCCTTTTCGATTTT+CGG | - | chr7.3:13131389-13131408 | MS.gene09891:CDS | 30.0% |
| ! | TATGGTTTGAGGTTTCTTAT+TGG | + | chr7.3:13132218-13132237 | None:intergenic | 30.0% |
| ! | TCAATTCCGAATGTTTTTCA+AGG | - | chr7.3:13132268-13132287 | MS.gene09891:intron | 30.0% |
| !! | ACATGTTTTCAAGATTTTGG+AGG | - | chr7.3:13133095-13133114 | MS.gene09891:CDS | 30.0% |
| !! | ATCATAATCGACTTGATGAA+AGG | - | chr7.3:13132995-13133014 | MS.gene09891:CDS | 30.0% |
| !! | ATGTTCTGGTTTAGAATTGA+AGG | - | chr7.3:13131721-13131740 | MS.gene09891:CDS | 30.0% |
| !! | TCATAATCGACTTGATGAAA+GGG | - | chr7.3:13132996-13133015 | MS.gene09891:CDS | 30.0% |
| !! | TCGACATGTTTTCAAGATTT+TGG | - | chr7.3:13133092-13133111 | MS.gene09891:CDS | 30.0% |
| !!! | AAGACATAGCCAGTATTTTT+TGG | - | chr7.3:13131547-13131566 | MS.gene09891:CDS | 30.0% |
| !!! | AGACATAGCCAGTATTTTTT+GGG | - | chr7.3:13131548-13131567 | MS.gene09891:CDS | 30.0% |
| !!! | CTGCACAATATGTTTTAAAG+CGG | - | chr7.3:13133160-13133179 | MS.gene09891:CDS | 30.0% |
| !!! | GTTTTTCAAGGTGTTTTTCA+TGG | - | chr7.3:13132280-13132299 | MS.gene09891:intron | 30.0% |
| ACATTATGGTTCAGAGAATG+AGG | - | chr7.3:13132650-13132669 | MS.gene09891:CDS | 35.0% | |
| ATAACACTGGATTCTCTGTT+AGG | - | chr7.3:13130947-13130966 | MS.gene09891:intron | 35.0% | |
| CATAAATTCCAAGGCAAGAT+AGG | + | chr7.3:13131847-13131866 | None:intergenic | 35.0% | |
| CATTATGGTTCAGAGAATGA+GGG | - | chr7.3:13132651-13132670 | MS.gene09891:CDS | 35.0% | |
| CGAGAAGTAAATGAAGTTCA+AGG | - | chr7.3:13131282-13131301 | MS.gene09891:CDS | 35.0% | |
| CGATTATGATCTTCAAACCT+TGG | + | chr7.3:13132985-13133004 | None:intergenic | 35.0% | |
| CTAAAGAAAAACCAGAGGAA+AGG | - | chr7.3:13131130-13131149 | MS.gene09891:intron | 35.0% | |
| CTCATTCAAATCGTATGCAT+TGG | - | chr7.3:13132497-13132516 | MS.gene09891:CDS | 35.0% | |
| GAAAGCTAAAGAAAAACCAG+AGG | - | chr7.3:13131125-13131144 | MS.gene09891:intron | 35.0% | |
| GAGAACATCTTATGAAGTGA+TGG | - | chr7.3:13131344-13131363 | MS.gene09891:CDS | 35.0% | |
| GTCTGCTTAATCCTAAAAAC+AGG | - | chr7.3:13131067-13131086 | MS.gene09891:intron | 35.0% | |
| TCTAATGACAACTCGTCAAA+AGG | - | chr7.3:13131425-13131444 | MS.gene09891:CDS | 35.0% | |
| TGTACAGAGCATAAATTCCA+AGG | + | chr7.3:13131856-13131875 | None:intergenic | 35.0% | |
| TTCTCATACTCAACAAGAAC+TGG | + | chr7.3:13131108-13131127 | None:intergenic | 35.0% | |
| ! | CATCGTAAGAGTGTGTTATT+TGG | - | chr7.3:13132121-13132140 | MS.gene09891:intron | 35.0% |
| ! | GGTTTCGAATGTTGATGTTT+TGG | - | chr7.3:13132933-13132952 | MS.gene09891:CDS | 35.0% |
| ! | TCTTTCAATGCTTTTCTTCG+TGG | - | chr7.3:13132580-13132599 | MS.gene09891:CDS | 35.0% |
| ! | TGGTTTAGAATTGAAGGTTC+TGG | - | chr7.3:13131727-13131746 | MS.gene09891:CDS | 35.0% |
| ! | TTTTAATGGAAGGCCTACTT+CGG | - | chr7.3:13132453-13132472 | MS.gene09891:CDS | 35.0% |
| ! | TTTTTCATGGTCTTTGCTCA+TGG | - | chr7.3:13132293-13132312 | MS.gene09891:intron | 35.0% |
| !! | CGCTTTAAAACATATTGTGC+AGG | + | chr7.3:13133162-13133181 | None:intergenic | 35.0% |
| !! | TATGCATTGGTCTTCAGTTT+GGG | - | chr7.3:13132510-13132529 | MS.gene09891:CDS | 35.0% |
| !! | TTCAAGATTTTGGAGGTCTT+AGG | - | chr7.3:13133102-13133121 | MS.gene09891:CDS | 35.0% |
| !!! | AGACATCAGCTACTTTTGAT+TGG | - | chr7.3:13132164-13132183 | MS.gene09891:intron | 35.0% |
| !!! | CACAATATGTTTTAAAGCGG+TGG | - | chr7.3:13133163-13133182 | MS.gene09891:CDS | 35.0% |
| AATCGAACAAGTGAATGGTC+TGG | + | chr7.3:13132616-13132635 | None:intergenic | 40.0% | |
| ACCTATGATCTTTGCATAGC+TGG | + | chr7.3:13131974-13131993 | None:intergenic | 40.0% | |
| ATCTGAGAGTGGACAATTGA+CGG | - | chr7.3:13130801-13130820 | MS.gene09891:CDS | 40.0% | |
| ATGAGGAGGACACAACAAAA+GGG | - | chr7.3:13132827-13132846 | MS.gene09891:CDS | 40.0% | |
| ATGTCGTATGTTTGAGAACC+GGG | - | chr7.3:13133059-13133078 | MS.gene09891:CDS | 40.0% | |
| ATTTATGCTCTGTACAGCCA+TGG | - | chr7.3:13131860-13131879 | MS.gene09891:CDS | 40.0% | |
| CATGTCGTATGTTTGAGAAC+CGG | - | chr7.3:13133058-13133077 | MS.gene09891:CDS | 40.0% | |
| TATGAGGAGGACACAACAAA+AGG | - | chr7.3:13132826-13132845 | MS.gene09891:CDS | 40.0% | |
| TCAAACCATATACACAGACC+AGG | - | chr7.3:13132228-13132247 | MS.gene09891:intron | 40.0% | |
| TCCAGCTATGCAAAGATCAT+AGG | - | chr7.3:13131970-13131989 | MS.gene09891:intron | 40.0% | |
| TCCATCTGCCCAAAAAATAC+TGG | + | chr7.3:13131559-13131578 | None:intergenic | 40.0% | |
| TGGTCTGTGTATATGGTTTG+AGG | + | chr7.3:13132229-13132248 | None:intergenic | 40.0% | |
| TTCATTTCAGCTGCCTTTCT+TGG | - | chr7.3:13132088-13132107 | MS.gene09891:intron | 40.0% | |
| TTGAAGAAAACCTTTCCCCA+AGG | - | chr7.3:13132965-13132984 | MS.gene09891:CDS | 40.0% | |
| ! | TCATGCTGAGTTGGACTTTA+AGG | - | chr7.3:13132678-13132697 | MS.gene09891:CDS | 40.0% |
| !! | AAGATTTTGGAGGTCTTAGG+TGG | - | chr7.3:13133105-13133124 | MS.gene09891:CDS | 40.0% |
| !! | GTATGCATTGGTCTTCAGTT+TGG | - | chr7.3:13132509-13132528 | MS.gene09891:CDS | 40.0% |
| !! | TCACATGTTGGCCTGTTTTT+AGG | + | chr7.3:13131081-13131100 | None:intergenic | 40.0% |
| !! | TCTTATGAAGTGATGGGTCA+AGG | - | chr7.3:13131351-13131370 | MS.gene09891:CDS | 40.0% |
| AACTCGTCAAAAGGAGATGG+TGG | - | chr7.3:13131434-13131453 | MS.gene09891:CDS | 45.0% | |
| AATGAAGCTCTCTCGAAACC+AGG | - | chr7.3:13131492-13131511 | MS.gene09891:CDS | 45.0% | |
| AGAACTGGACTGTCACATGT+TGG | + | chr7.3:13131093-13131112 | None:intergenic | 45.0% | |
| AGCCACTTAAAGTCCGAAGT+AGG | + | chr7.3:13132469-13132488 | None:intergenic | 45.0% | |
| ATCCCAACAGTCAGCTTATG+CGG | - | chr7.3:13132728-13132747 | MS.gene09891:CDS | 45.0% | |
| CATGTCGACATAAGAAACCC+CGG | + | chr7.3:13133080-13133099 | None:intergenic | 45.0% | |
| CTCAAGTAGCACAAATGCTC+TGG | + | chr7.3:13131255-13131274 | None:intergenic | 45.0% | |
| GAAAAACCAGAGGAAAGGGT+TGG | - | chr7.3:13131135-13131154 | MS.gene09891:intron | 45.0% | |
| GACAACTCGTCAAAAGGAGA+TGG | - | chr7.3:13131431-13131450 | MS.gene09891:CDS | 45.0% | |
| GAGGGATAATCATGCTGAGT+TGG | - | chr7.3:13132669-13132688 | MS.gene09891:CDS | 45.0% | |
| GATCTTCAAACCTTGGGGAA+AGG | + | chr7.3:13132978-13132997 | None:intergenic | 45.0% | |
| TGTCGTATGTTTGAGAACCG+GGG | - | chr7.3:13133060-13133079 | MS.gene09891:CDS | 45.0% | |
| TGTCTTCTGCAGCATCAACT+TGG | + | chr7.3:13131533-13131552 | None:intergenic | 45.0% | |
| TTACAACCAACCCTTTCCTC+TGG | + | chr7.3:13131144-13131163 | None:intergenic | 45.0% | |
| ! | GTGAGGTCACATTTTACAGC+TGG | - | chr7.3:13132532-13132551 | MS.gene09891:CDS | 45.0% |
| !! | ATTGGTCTTCAGTTTGGGTG+AGG | - | chr7.3:13132515-13132534 | MS.gene09891:CDS | 45.0% |
| !! | GAAAGGGTTGGTTGTAAAGC+TGG | - | chr7.3:13131147-13131166 | MS.gene09891:intron | 45.0% |
| !!! | GCCAGTATTTTTTGGGCAGA+TGG | - | chr7.3:13131555-13131574 | MS.gene09891:CDS | 45.0% |
| ACCAGCCTGGTCTGTGTATA+TGG | + | chr7.3:13132236-13132255 | None:intergenic | 50.0% | |
| ACCATATACACAGACCAGGC+TGG | - | chr7.3:13132232-13132251 | MS.gene09891:intron | 50.0% | |
| AGGGTTGTCACAGTCGACAT+TGG | - | chr7.3:13133015-13133034 | MS.gene09891:CDS | 50.0% | |
| GACCGCATAAGCTGACTGTT+GGG | + | chr7.3:13132733-13132752 | None:intergenic | 50.0% | |
| GGCCTACTTCGGACTTTAAG+TGG | - | chr7.3:13132464-13132483 | MS.gene09891:CDS | 50.0% | |
| GGGTTGTCACAGTCGACATT+GGG | - | chr7.3:13133016-13133035 | MS.gene09891:CDS | 50.0% | |
| GGTCTTTGCTCATGGCACAT+GGG | - | chr7.3:13132301-13132320 | MS.gene09891:intron | 50.0% | |
| TGGGTGATCCTATCTTGCCT+TGG | - | chr7.3:13131836-13131855 | MS.gene09891:CDS | 50.0% | |
| TGGTCTTTGCTCATGGCACA+TGG | - | chr7.3:13132300-13132319 | MS.gene09891:intron | 50.0% | |
| !! | GAAGTGATGGGTCAAGGAGT+TGG | - | chr7.3:13131357-13131376 | MS.gene09891:CDS | 50.0% |
| ACTTCAACAACGCACCAGCC+TGG | + | chr7.3:13132249-13132268 | None:intergenic | 55.0% | |
| GGACCGCATAAGCTGACTGT+TGG | + | chr7.3:13132734-13132753 | None:intergenic | 55.0% | |
| ! | CGTCAAAAGGAGATGGTGGC+TGG | - | chr7.3:13131438-13131457 | MS.gene09891:CDS | 55.0% |
| !! | GTGATGGGTCAAGGAGTTGG+AGG | - | chr7.3:13131360-13131379 | MS.gene09891:CDS | 55.0% |
| GGGTCAAGGAGTTGGAGGCA+CGG | - | chr7.3:13131365-13131384 | MS.gene09891:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 13130781 | 13133219 | 13130781 | ID=MS.gene09891 |
| chr7.3 | mRNA | 13130781 | 13133219 | 13130781 | ID=MS.gene09891.t1;Parent=MS.gene09891 |
| chr7.3 | exon | 13132337 | 13133219 | 13132337 | ID=MS.gene09891.t1.exon1;Parent=MS.gene09891.t1 |
| chr7.3 | CDS | 13132337 | 13133219 | 13132337 | ID=cds.MS.gene09891.t1;Parent=MS.gene09891.t1 |
| chr7.3 | exon | 13131251 | 13131902 | 13131251 | ID=MS.gene09891.t1.exon2;Parent=MS.gene09891.t1 |
| chr7.3 | CDS | 13131251 | 13131902 | 13131251 | ID=cds.MS.gene09891.t1;Parent=MS.gene09891.t1 |
| chr7.3 | exon | 13130781 | 13130820 | 13130781 | ID=MS.gene09891.t1.exon3;Parent=MS.gene09891.t1 |
| chr7.3 | CDS | 13130781 | 13130820 | 13130781 | ID=cds.MS.gene09891.t1;Parent=MS.gene09891.t1 |
| Gene Sequence |
| Protein sequence |
