AlfalfaGEDB | MS.gene09913

M. sativa cultivar XinJiangDaYe / MS.gene09913

KEGG: -
GO: GO:0000160 GO:0007165 GO:0008150 GO:0009987 GO:0035556 GO:0050789 GO:0050794 GO:0065007
PFAM: PF00072.27

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene09913.t1	AES81629.1	94.2	86	5	0	38	123	11	96	1.20E-37	166

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene09913.t1	F4JZT3	39.2	120	69	2	16	135	18	133	1.1e-13	77.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene09913.t1	G7KYG8	94.2	86	5	0	38	123	11	96	8.9e-38	166.0

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene09913.t1	TR	Others

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene09913.t1	MTR_7g098860	94.186	86	5	0	38	123	11	96	1.53e-54	166
MS.gene09913.t1	MTR_7g098910	47.500	120	58	3	16	135	22	136	2.47e-25	94.0
MS.gene09913.t1	MTR_7g099500	43.902	123	65	2	16	138	11	129	1.22e-24	92.0
MS.gene09913.t1	MTR_8g063580	45.545	101	52	2	16	114	12	111	9.56e-18	74.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene09913.t1	AT5G26594	39.167	120	69	2	16	135	18	133	4.02e-19	78.2
MS.gene09913.t1	AT3G04280	41.414	99	57	1	16	113	22	120	5.46e-15	67.4
MS.gene09913.t1	AT3G04280	41.414	99	57	1	16	113	22	120	5.46e-15	67.4
MS.gene09913.t1	AT3G04280	41.414	99	57	1	16	113	22	120	5.46e-15	67.4

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Find 32 sgRNAs with CRISPR-Local

Find 45 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGTCATGCTAGTTGAC+AGG	0.534345	7.1:-9919132	None:intergenic
AAAGAAGCCTTAGACCTCAT+TGG	0.516268	7.1:+9918653	MS.gene09913:CDS
AACCGTAATTCCATCCATGA+CGG	0.593130	7.1:-9918723	None:intergenic
AACCGTGCCAATGAGGTCTA+AGG	0.458884	7.1:-9918660	None:intergenic
ACCGTAATTCCATCCATGAC+GGG	0.549235	7.1:-9918722	None:intergenic
AGACACCAACAATCTGGCCA+GGG	0.657108	7.1:-9918987	None:intergenic
AGAGATATCTTGACATTACT+TGG	0.437895	7.1:+9918602	MS.gene09913:CDS
AGATGATGATCTTGTTCGAA+TGG	0.623757	7.1:+9918574	MS.gene09913:CDS
AGCCTTAGACCTCATTGGCA+CGG	0.608494	7.1:+9918658	MS.gene09913:CDS
AGGATCATGCCCGTCATGGA+TGG	0.527719	7.1:+9918713	MS.gene09913:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGAGATATCTTGACATTACT+TGG	+	chr7.1:9918602-9918621	MS.gene09913:CDS	30.0%
ATGAACAGAAAGAAAATGCA+TGG	+	chr7.1:9918857-9918876	MS.gene09913:intron	30.0%
CTGCATATTCATCATTAGTA+AGG	-	chr7.1:9919020-9919039	None:intergenic	30.0%
TGAACAGAAAGAAAATGCAT+GGG	+	chr7.1:9918858-9918877	MS.gene09913:intron	30.0%
AGATGATGATCTTGTTCGAA+TGG	+	chr7.1:9918574-9918593	MS.gene09913:CDS	35.0%
GAACAGAAAGAAAATGCATG+GGG	+	chr7.1:9918859-9918878	MS.gene09913:intron	35.0%
GATGATCTACATCATGAAGA+TGG	+	chr7.1:9919060-9919079	MS.gene09913:CDS	35.0%
TAAATTCGACCTCATTCTCA+TGG	+	chr7.1:9918688-9918707	MS.gene09913:CDS	35.0%
AAAGAAGCCTTAGACCTCAT+TGG	+	chr7.1:9918653-9918672	MS.gene09913:CDS	40.0%
AACCGTAATTCCATCCATGA+CGG	-	chr7.1:9918726-9918745	None:intergenic	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.1	gene	9918509	9919143	9918509	ID=MS.gene09913
chr7.1	mRNA	9918509	9919143	9918509	ID=MS.gene09913.t1;Parent=MS.gene09913
chr7.1	exon	9918509	9918742	9918509	ID=MS.gene09913.t1.exon1;Parent=MS.gene09913.t1
chr7.1	CDS	9918509	9918742	9918509	ID=cds.MS.gene09913.t1;Parent=MS.gene09913.t1
chr7.1	exon	9918958	9919143	9918958	ID=MS.gene09913.t1.exon2;Parent=MS.gene09913.t1
chr7.1	CDS	9918958	9919143	9918958	ID=cds.MS.gene09913.t1;Parent=MS.gene09913.t1

Gene Sequence

>MS.gene09913

ATGGCACGTGTATTTCCTCCATATCATCACAGAGTCCCGCGTGGATTAAAAGTACTGGTTGTGGAAGATGATGATCTTGTTCGAATGGCTCATAGAGATATCTTGACATTACTTGGTGTGGAAACTCACGCAGTCAAAAATGGTAAAGAAGCCTTAGACCTCATTGGCACGGTTGAACGTAAATTCGACCTCATTCTCATGGCTAGGATCATGCCCGTCATGGATGGAATTACGGTTGGTACACTACATAATTACATACATACATACACGGTTATATTTCATCCCATGAATTAGTTTAAAGCAATTTATATGTTTGATAATTTTGTATGTCTATATTAATTAATTGCTATGAACAGAAAGAAAATGCATGGGGTATGTTACATATATCCTAGCATATAATCATTCATAATGAGATTCATAATCATTTCATTCATATGTGTGCACTGCAGGCAACAAAGAAGCTGCGCGATTTAGAATACCCTGGCCAGATTGTTGGTGTCTCACGTCGCCTTACTAATGATGAATATGCAGAATTTCGCAATGCAGGGCTAGATGATCTACATCATGAAGATGGAATACCCTTGCACTATCATATGTTGAAACTAATTTTGAAAAGGGTTCTTCCTGTCAACTAG

Protein sequence

>MS.gene09913.t1

MARVFPPYHHRVPRGLKVLVVEDDDLVRMAHRDILTLLGVETHAVKNGKEALDLIGTVERKFDLILMARIMPVMDGITATKKLRDLEYPGQIVGVSRRLTNDEYAEFRNAGLDDLHHEDGIPLHYHMLKLILKRVLPVN