AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene09950

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene09950.t1 MTR_5g012080 97.994 349 6 1 1 348 1 349 0.0 723
MS.gene09950.t1 MTR_4g101680 61.376 378 102 16 1 348 1 364 2.95e-144 412
MS.gene09950.t1 MTR_4g036030 64.706 323 82 13 1 303 1 311 1.92e-136 392
MS.gene09950.t1 MTR_5g021710 53.074 309 124 8 5 305 6 301 7.77e-102 304
MS.gene09950.t1 MTR_8g076110 52.703 296 105 7 5 298 4 266 6.67e-97 290
MS.gene09950.t1 MTR_8g024480 42.706 377 137 9 1 317 9 366 3.29e-83 259
MS.gene09950.t1 MTR_1g096430 71.519 158 43 2 1 158 1 156 6.80e-80 248
MS.gene09950.t1 MTR_2g062730 44.551 312 130 9 7 298 10 298 3.71e-79 246
MS.gene09950.t1 MTR_4g035590 71.895 153 40 2 7 159 8 157 2.08e-77 241
MS.gene09950.t1 MTR_6g084430 54.651 172 68 4 6 172 4 170 2.74e-60 196
MS.gene09950.t1 MTR_3g435150 57.595 158 60 3 7 161 16 169 4.99e-58 190
MS.gene09950.t1 MTR_4g108760 56.962 158 61 3 7 161 17 170 5.87e-58 191
MS.gene09950.t1 MTR_2g064090 55.128 156 66 3 7 160 6 159 2.59e-57 189
MS.gene09950.t1 MTR_6g477900 54.902 153 66 3 7 158 6 156 3.06e-56 183
MS.gene09950.t1 MTR_2g078700 55.063 158 64 3 5 158 21 175 4.38e-56 187
MS.gene09950.t1 MTR_6g012670 44.017 234 111 7 7 231 20 242 4.48e-55 183
MS.gene09950.t1 MTR_3g064580 54.839 155 64 4 7 158 6 157 8.95e-55 190
MS.gene09950.t1 MTR_2g064470 42.800 250 123 9 1 242 1 238 9.55e-55 182
MS.gene09950.t1 MTR_3g109340 52.941 153 68 2 7 158 22 171 9.65e-55 183
MS.gene09950.t1 MTR_7g085220 49.102 167 69 3 5 158 6 169 1.02e-54 182
MS.gene09950.t1 MTR_1g008740 54.545 154 65 3 7 158 13 163 1.18e-54 182
MS.gene09950.t1 MTR_3g070030 53.846 156 64 3 8 159 20 171 1.43e-54 182
MS.gene09950.t1 MTR_1g069805 53.595 153 64 3 7 158 10 156 1.68e-54 180
MS.gene09950.t1 MTR_1g008740 54.545 154 65 3 7 158 27 177 1.86e-54 182
MS.gene09950.t1 MTR_6g011860 45.128 195 94 2 1 185 9 200 2.38e-54 183
MS.gene09950.t1 MTR_8g467490 49.412 170 72 3 9 167 16 182 2.97e-54 183
MS.gene09950.t1 MTR_5g076850 54.902 153 66 3 7 158 6 156 3.21e-54 188
MS.gene09950.t1 MTR_7g011130 42.460 252 99 7 10 227 22 261 6.06e-54 181
MS.gene09950.t1 MTR_3g109340 53.595 153 66 3 7 158 22 170 6.81e-54 181
MS.gene09950.t1 MTR_5g040420 39.583 240 111 6 7 231 14 234 2.06e-52 178
MS.gene09950.t1 MTR_4g089135 44.390 205 79 6 6 182 14 211 3.10e-52 176
MS.gene09950.t1 MTR_7g011120 47.115 208 86 6 10 205 11 206 3.37e-52 175
MS.gene09950.t1 MTR_7g085260 34.783 345 168 11 7 307 17 348 4.28e-52 177
MS.gene09950.t1 MTR_7g097090 52.597 154 64 4 5 156 8 154 4.93e-52 174
MS.gene09950.t1 MTR_4g081870 49.123 171 77 4 5 169 7 173 5.66e-52 173
MS.gene09950.t1 MTR_2g080010 48.193 166 70 3 6 158 14 176 6.86e-52 176
MS.gene09950.t1 MTR_3g093040 51.634 153 71 3 7 158 108 258 1.70e-51 173
MS.gene09950.t1 MTR_3g096920 49.682 157 70 3 7 159 7 158 3.77e-51 172
MS.gene09950.t1 MTR_7g005280 52.258 155 66 3 6 159 14 161 4.06e-51 171
MS.gene09950.t1 MTR_8g094580 49.390 164 73 3 1 159 1 159 7.31e-51 171
MS.gene09950.t1 MTR_3g088110 50.318 157 69 3 7 159 7 158 1.11e-50 171
MS.gene09950.t1 MTR_5g069030 53.165 158 71 3 3 159 21 176 1.15e-50 178
MS.gene09950.t1 MTR_5g014300 48.125 160 74 3 5 158 4 160 2.46e-50 171
MS.gene09950.t1 MTR_5g041940 44.565 184 89 5 7 184 3 179 9.38e-50 167
MS.gene09950.t1 MTR_4g098630 43.434 198 95 5 5 190 4 196 2.34e-49 168
MS.gene09950.t1 MTR_6g032770 50.000 158 68 4 7 158 18 170 3.18e-49 169
MS.gene09950.t1 MTR_2g068880 40.693 231 109 7 7 220 21 240 3.34e-49 167
MS.gene09950.t1 MTR_2g068920 36.727 275 143 9 7 253 20 291 3.83e-49 167
MS.gene09950.t1 MTR_3g093050 50.000 156 75 3 4 158 19 172 7.77e-49 173
MS.gene09950.t1 MTR_3g093050 50.000 156 75 3 4 158 19 172 1.12e-48 173
MS.gene09950.t1 MTR_3g116070 56.716 134 53 3 7 138 23 153 1.32e-48 167
MS.gene09950.t1 MTR_3g096920 52.349 149 65 3 7 155 7 149 2.70e-48 166
MS.gene09950.t1 MTR_2g079990 50.000 154 70 4 7 158 16 164 3.03e-48 166
MS.gene09950.t1 MTR_7g100990 48.428 159 71 4 7 158 11 165 3.26e-48 165
MS.gene09950.t1 MTR_2157s0010 47.561 164 71 4 7 158 8 168 1.06e-47 162
MS.gene09950.t1 MTR_8g059170 48.387 155 73 3 7 158 14 164 4.09e-46 160
MS.gene09950.t1 MTR_4g134460 47.712 153 74 3 7 158 54 201 4.56e-46 162
MS.gene09950.t1 MTR_3g096140 48.052 154 71 6 9 158 9 157 1.12e-45 157
MS.gene09950.t1 MTR_4g075980 46.914 162 75 4 9 168 17 169 1.21e-45 158
MS.gene09950.t1 MTR_1g090720 49.045 157 71 3 9 158 44 198 1.90e-45 162
MS.gene09950.t1 MTR_0036s0150 49.669 151 73 3 9 158 7 155 2.00e-45 163
MS.gene09950.t1 MTR_5g090970 34.130 293 159 9 7 279 18 296 3.12e-45 157
MS.gene09950.t1 MTR_2g093810 48.447 161 68 5 7 158 14 168 3.12e-45 157
MS.gene09950.t1 MTR_8g063550 47.059 153 74 4 9 158 8 156 7.63e-45 157
MS.gene09950.t1 MTR_3g096140 47.059 153 74 5 9 158 9 157 9.36e-45 157
MS.gene09950.t1 MTR_1g090723 49.007 151 74 3 9 158 10 158 1.12e-44 161
MS.gene09950.t1 MTR_1g090723 49.007 151 74 3 9 158 10 158 1.21e-44 162
MS.gene09950.t1 MTR_1g097300 47.682 151 76 3 9 158 21 169 1.83e-44 160
MS.gene09950.t1 MTR_1g090723 50.327 153 70 5 9 158 10 159 2.13e-44 161
MS.gene09950.t1 MTR_2g079990 43.094 181 70 4 7 158 16 192 2.50e-44 156
MS.gene09950.t1 MTR_8g063550 46.753 154 75 4 9 159 8 157 2.83e-44 157
MS.gene09950.t1 MTR_8g063550 46.753 154 75 4 9 159 8 157 3.24e-44 157
MS.gene09950.t1 MTR_8g099750 50.610 164 63 7 2 155 9 164 1.15e-43 150
MS.gene09950.t1 MTR_5g090970 34.130 293 158 10 7 279 18 295 2.25e-43 152
MS.gene09950.t1 MTR_8g093580 46.104 154 76 4 9 159 8 157 3.99e-43 155
MS.gene09950.t1 MTR_3g070040 47.403 154 69 3 11 159 12 158 1.17e-41 148
MS.gene09950.t1 MTR_4g052620 34.583 240 135 8 8 230 6 240 8.34e-40 141
MS.gene09950.t1 MTR_3g098810 45.833 168 76 5 2 159 9 171 1.68e-39 140
MS.gene09950.t1 MTR_2g086880 50.794 126 59 2 9 134 20 142 8.19e-38 142
MS.gene09950.t1 MTR_2g086880 50.794 126 59 2 9 134 20 142 1.06e-37 141
MS.gene09950.t1 MTR_3g098810 50.000 138 61 3 2 136 9 141 1.35e-37 133
MS.gene09950.t1 MTR_8g023840 42.105 190 99 6 2 186 3 186 1.78e-37 139
MS.gene09950.t1 MTR_8g023860 47.403 154 69 6 6 155 11 156 2.91e-36 136
MS.gene09950.t1 MTR_3g096140 43.165 139 72 5 23 158 2 136 2.88e-35 131
MS.gene09950.t1 MTR_2g086690 39.655 174 90 8 8 171 5 173 1.68e-32 122
MS.gene09950.t1 MTR_8g023930 38.000 200 106 7 7 196 24 215 3.11e-31 123
MS.gene09950.t1 MTR_7g105170 35.429 175 102 5 6 171 3 175 5.66e-31 118
MS.gene09950.t1 MTR_4g094302 36.875 160 82 4 7 158 11 159 8.18e-31 115
MS.gene09950.t1 MTR_8g023900 35.909 220 103 8 10 199 196 407 9.19e-31 122
MS.gene09950.t1 MTR_8g023900 39.355 155 86 6 7 158 12 161 3.56e-28 114
MS.gene09950.t1 MTR_4g094302 41.221 131 65 3 7 136 11 130 9.53e-29 109
MS.gene09950.t1 MTR_8g023880 38.506 174 81 7 1 158 1 164 8.88e-28 110
MS.gene09950.t1 MTR_8g094580 47.059 102 47 2 63 159 6 105 7.38e-27 106
MS.gene09950.t1 MTR_7g070140 49.367 79 39 1 61 138 15 93 1.13e-20 87.0
MS.gene09950.t1 MTR_8g093790 35.057 174 84 8 7 178 10 156 1.19e-19 85.9
MS.gene09950.t1 MTR_3g096400 30.178 169 97 5 1 157 1 160 3.63e-17 79.3
MS.gene09950.t1 MTR_7g083330 26.875 160 112 4 7 166 18 172 2.83e-14 70.9
MS.gene09950.t1 MTR_7g070150 46.875 64 32 1 107 170 8 69 3.02e-14 68.2
MS.gene09950.t1 MTR_7g083360 29.688 128 86 3 7 134 10 133 4.64e-13 66.6
MS.gene09950.t1 MTR_2g014680 26.697 221 135 10 1 201 47 260 3.18e-12 67.0
MS.gene09950.t1 MTR_1g087190 52.083 48 22 1 9 55 7 54 5.44e-11 57.8
MS.gene09950.t1 MTR_4g078875 29.714 175 94 8 1 156 42 206 9.37e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene09950.t1 AT1G62700 54.703 404 113 14 1 345 1 393 9.80e-131 379
MS.gene09950.t1 AT1G62700 54.703 404 113 14 1 345 1 393 9.80e-131 379
MS.gene09950.t1 AT1G12260 55.362 401 120 17 1 348 1 395 1.37e-128 374
MS.gene09950.t1 AT1G12260 55.615 374 108 14 1 348 1 342 4.87e-126 365
MS.gene09950.t1 AT2G18060 53.106 322 116 12 7 309 9 314 2.01e-102 306
MS.gene09950.t1 AT2G18060 53.106 322 116 12 7 309 9 314 2.01e-102 306
MS.gene09950.t1 AT4G36160 52.532 316 122 9 7 304 14 319 5.15e-101 303
MS.gene09950.t1 AT4G36160 52.532 316 122 9 7 304 10 315 5.41e-101 303
MS.gene09950.t1 AT4G36160 52.532 316 122 9 7 304 10 315 5.41e-101 303
MS.gene09950.t1 AT5G66300 52.475 303 102 11 7 295 12 286 1.92e-96 288
MS.gene09950.t1 AT5G62380 48.615 325 114 10 1 300 1 297 6.21e-92 278
MS.gene09950.t1 AT5G62380 48.615 325 114 10 1 300 1 297 6.21e-92 278
MS.gene09950.t1 AT2G46770 47.152 316 110 11 1 295 10 289 8.77e-83 256
MS.gene09950.t1 AT1G71930 50.558 269 105 10 5 262 7 258 1.16e-78 244
MS.gene09950.t1 AT1G71930 50.558 269 105 10 5 262 7 258 1.16e-78 244
MS.gene09950.t1 AT1G32770 44.654 318 128 9 1 296 10 301 3.28e-77 241
MS.gene09950.t1 AT4G10350 70.130 154 44 2 7 159 9 161 1.93e-76 239
MS.gene09950.t1 AT1G33280 71.242 153 41 2 7 159 8 157 1.96e-76 238
MS.gene09950.t1 AT3G61910 63.953 172 47 2 1 158 5 175 1.19e-75 236
MS.gene09950.t1 AT1G79580 69.281 153 45 1 7 159 17 167 2.35e-75 237
MS.gene09950.t1 AT1G79580 69.281 153 45 1 7 159 17 167 2.35e-75 237
MS.gene09950.t1 AT1G79580 69.281 153 45 1 7 159 17 167 2.35e-75 237
MS.gene09950.t1 AT1G79580 69.281 153 45 1 7 159 17 167 2.35e-75 237
MS.gene09950.t1 AT1G79580 69.281 153 45 1 7 159 17 167 2.35e-75 237
MS.gene09950.t1 AT3G18400 56.688 157 64 2 6 162 4 156 1.28e-61 200
MS.gene09950.t1 AT2G24430 56.688 157 64 2 7 162 16 169 1.24e-59 194
MS.gene09950.t1 AT2G24430 56.688 157 64 2 7 162 16 169 1.24e-59 194
MS.gene09950.t1 AT5G61430 41.667 264 130 9 7 256 16 269 6.49e-59 193
MS.gene09950.t1 AT5G39610 55.488 164 66 3 7 167 20 179 8.49e-58 189
MS.gene09950.t1 AT3G04060 52.500 160 70 2 7 163 20 176 7.03e-57 188
MS.gene09950.t1 AT3G17730 54.902 153 66 3 7 158 6 156 1.19e-56 185
MS.gene09950.t1 AT5G18270 50.888 169 76 3 7 171 21 186 2.12e-56 187
MS.gene09950.t1 AT5G18270 50.888 169 76 3 7 171 21 186 3.36e-56 186
MS.gene09950.t1 AT5G07680 42.446 278 121 10 7 265 3 260 5.70e-56 185
MS.gene09950.t1 AT5G07680 42.446 278 121 10 7 265 17 274 9.67e-56 185
MS.gene09950.t1 AT1G65910 55.556 153 65 3 7 158 6 156 1.11e-55 192
MS.gene09950.t1 AT5G53950 54.777 157 64 3 6 158 16 169 1.97e-55 186
MS.gene09950.t1 AT1G76420 55.556 153 64 2 7 158 22 171 2.19e-55 184
MS.gene09950.t1 AT3G29035 50.556 180 82 3 7 183 24 199 3.81e-55 183
MS.gene09950.t1 AT1G69490 51.807 166 69 4 5 164 7 167 4.84e-54 179
MS.gene09950.t1 AT1G54330 53.750 160 70 3 7 166 6 161 8.15e-54 179
MS.gene09950.t1 AT5G46590 50.000 168 78 3 5 167 4 170 9.24e-54 179
MS.gene09950.t1 AT5G17260 39.773 264 140 7 7 254 6 266 1.05e-53 184
MS.gene09950.t1 AT1G01720 46.448 183 87 4 1 178 1 177 5.52e-53 177
MS.gene09950.t1 AT3G12977 51.923 156 69 3 5 158 16 167 6.69e-53 176
MS.gene09950.t1 AT3G03200 53.205 156 69 3 7 160 6 159 7.73e-53 181
MS.gene09950.t1 AT3G10480 54.902 153 63 4 9 158 29 178 1.01e-52 180
MS.gene09950.t1 AT3G10490 51.592 157 70 4 5 158 25 178 1.05e-52 174
MS.gene09950.t1 AT4G35580 53.595 153 68 3 7 158 9 159 1.09e-52 182
MS.gene09950.t1 AT3G15170 54.839 155 63 3 5 155 18 169 1.38e-52 176
MS.gene09950.t1 AT4G35580 53.595 153 68 3 7 158 9 159 1.47e-52 182
MS.gene09950.t1 AT4G35580 38.824 255 124 7 7 246 9 246 1.62e-52 182
MS.gene09950.t1 AT3G04070 49.123 171 70 5 5 162 8 174 3.45e-52 176
MS.gene09950.t1 AT5G46590 57.576 132 55 1 5 136 4 134 5.12e-52 174
MS.gene09950.t1 AT2G43000 50.658 152 69 3 9 158 20 167 5.47e-52 174
MS.gene09950.t1 AT3G10480 54.248 153 63 4 9 158 29 177 6.28e-52 178
MS.gene09950.t1 AT1G33060 52.288 153 70 3 7 158 24 174 7.79e-52 182
MS.gene09950.t1 AT1G33060 52.288 153 70 3 7 158 24 174 8.29e-52 182
MS.gene09950.t1 AT5G39820 44.262 183 76 3 7 166 20 199 1.38e-51 174
MS.gene09950.t1 AT3G10490 52.941 153 66 4 9 158 29 178 1.67e-51 177
MS.gene09950.t1 AT1G56010 39.592 245 119 9 5 234 17 247 3.12e-51 173
MS.gene09950.t1 AT1G61110 48.503 167 68 3 6 158 15 177 6.98e-51 172
MS.gene09950.t1 AT3G04070 47.312 186 67 6 5 162 8 190 2.55e-50 172
MS.gene09950.t1 AT4G27410 49.673 153 72 3 7 158 14 162 1.48e-49 168
MS.gene09950.t1 AT1G77450 47.305 167 79 3 6 168 9 170 1.55e-49 166
MS.gene09950.t1 AT4G10350 72.477 109 28 2 52 159 7 114 1.69e-49 167
MS.gene09950.t1 AT5G63790 44.615 195 90 6 6 194 49 231 2.86e-49 167
MS.gene09950.t1 AT5G63790 44.615 195 90 6 6 194 59 241 3.44e-49 168
MS.gene09950.t1 AT1G26870 45.977 174 78 4 9 170 18 187 3.80e-49 170
MS.gene09950.t1 AT5G24590 50.000 158 77 2 3 159 9 165 8.88e-49 170
MS.gene09950.t1 AT4G17980 44.500 200 86 7 5 183 4 199 1.58e-48 164
MS.gene09950.t1 AT5G04410 51.282 156 71 4 5 158 7 159 1.87e-48 171
MS.gene09950.t1 AT5G08790 40.741 216 101 6 6 215 6 200 1.88e-48 165
MS.gene09950.t1 AT4G17980 44.500 200 86 7 5 183 4 199 2.49e-48 164
MS.gene09950.t1 AT4G28530 48.256 172 64 5 5 158 8 172 4.57e-48 166
MS.gene09950.t1 AT3G49530 49.020 153 76 2 7 158 13 164 5.07e-48 167
MS.gene09950.t1 AT3G15500 48.734 158 74 4 7 162 14 166 5.32e-48 164
MS.gene09950.t1 AT3G15510 47.879 165 70 3 11 162 21 182 8.89e-48 165
MS.gene09950.t1 AT3G10500 49.677 155 75 3 5 158 7 159 9.98e-48 169
MS.gene09950.t1 AT2G33480 47.097 155 74 3 6 159 14 161 1.26e-47 162
MS.gene09950.t1 AT3G49530 49.020 153 76 2 7 158 13 164 1.65e-47 167
MS.gene09950.t1 AT1G52890 46.988 166 81 4 7 170 14 174 1.69e-47 163
MS.gene09950.t1 AT5G13180 45.342 161 81 2 2 161 9 163 3.34e-47 160
MS.gene09950.t1 AT4G27410 46.108 167 74 4 7 158 14 179 6.29e-47 162
MS.gene09950.t1 AT3G10480 45.789 190 64 6 5 158 25 211 7.47e-47 166
MS.gene09950.t1 AT1G32510 44.262 183 93 3 5 179 4 185 9.13e-47 160
MS.gene09950.t1 AT2G33480 46.753 154 74 3 6 159 14 159 2.21e-46 159
MS.gene09950.t1 AT2G18060 43.983 241 100 12 88 309 2 226 2.61e-46 159
MS.gene09950.t1 AT2G02450 46.711 152 77 2 7 158 51 198 1.40e-45 160
MS.gene09950.t1 AT2G02450 46.711 152 77 2 7 158 51 198 1.81e-45 160
MS.gene09950.t1 AT1G34190 49.045 157 71 6 9 161 18 169 4.64e-45 162
MS.gene09950.t1 AT1G34180 45.455 154 81 3 9 161 18 169 8.46e-45 159
MS.gene09950.t1 AT1G34180 45.455 154 81 3 9 161 18 169 3.61e-44 160
MS.gene09950.t1 AT1G52880 47.305 167 73 3 11 165 21 184 4.26e-44 154
MS.gene09950.t1 AT2G17040 43.210 162 81 5 9 168 8 160 1.80e-43 151
MS.gene09950.t1 AT3G12910 44.509 173 71 6 9 162 23 189 5.51e-42 148
MS.gene09950.t1 AT1G34180 42.262 168 78 4 9 161 18 181 1.09e-41 151
MS.gene09950.t1 AT1G34180 43.452 168 76 5 9 161 18 181 3.95e-41 152
MS.gene09950.t1 AT5G09330 45.570 158 77 5 5 158 4 156 4.89e-41 150
MS.gene09950.t1 AT5G09330 45.570 158 77 5 5 158 4 156 4.89e-41 150
MS.gene09950.t1 AT5G09330 45.570 158 77 5 5 158 4 156 4.89e-41 150
MS.gene09950.t1 AT5G09330 45.570 158 77 5 5 158 4 156 4.89e-41 150
MS.gene09950.t1 AT5G09330 45.570 158 77 5 5 158 4 156 4.89e-41 150
MS.gene09950.t1 AT5G64060 42.675 157 83 5 5 158 4 156 1.10e-40 146
MS.gene09950.t1 AT5G04395 46.358 151 69 3 5 143 26 176 1.87e-40 141
MS.gene09950.t1 AT2G27300 42.262 168 86 5 5 170 12 170 2.38e-40 145
MS.gene09950.t1 AT5G22290 42.581 155 81 3 5 159 19 165 1.86e-39 142
MS.gene09950.t1 AT3G44290 46.825 126 64 2 9 134 16 138 1.49e-37 134
MS.gene09950.t1 AT5G61430 38.426 216 109 9 55 256 1 206 2.85e-37 135
MS.gene09950.t1 AT3G44290 46.825 126 64 2 9 134 16 138 1.23e-36 135
MS.gene09950.t1 AT1G56010 40.217 184 85 7 65 234 8 180 2.36e-35 129
MS.gene09950.t1 AT3G12977 54.128 109 44 3 52 158 10 114 4.86e-35 128
MS.gene09950.t1 AT1G32870 43.871 155 80 4 7 158 10 160 6.52e-34 131
MS.gene09950.t1 AT1G32870 43.871 155 80 4 7 158 10 160 7.63e-34 131
MS.gene09950.t1 AT1G32870 43.871 155 80 4 7 158 46 196 1.24e-33 130
MS.gene09950.t1 AT2G33480 47.573 103 52 2 58 159 3 104 3.93e-29 112
MS.gene09950.t1 AT3G44350 34.706 170 99 7 10 172 8 172 8.44e-28 109
MS.gene09950.t1 AT5G22380 36.774 155 88 5 10 156 8 160 2.07e-27 108
MS.gene09950.t1 AT4G01550 39.869 153 82 5 10 158 7 153 5.95e-27 111
MS.gene09950.t1 AT3G44350 37.762 143 80 5 10 146 8 147 8.51e-27 104
MS.gene09950.t1 AT4G01520 37.500 152 86 5 8 155 5 151 1.55e-26 107
MS.gene09950.t1 AT4G28530 45.133 113 41 3 5 100 8 116 1.84e-25 104
MS.gene09950.t1 AT4G01540 37.333 150 85 5 10 155 7 151 2.05e-25 105
MS.gene09950.t1 AT4G01540 37.333 150 85 5 10 155 7 151 2.34e-25 106
MS.gene09950.t1 AT4G01540 37.333 150 85 5 10 155 7 151 3.67e-25 105
MS.gene09950.t1 AT4G01540 37.333 150 85 5 10 155 7 151 4.12e-25 105
MS.gene09950.t1 AT1G02230 42.484 153 75 8 8 155 4 148 1.35e-24 103
MS.gene09950.t1 AT5G64530 33.929 168 80 5 7 158 3 155 2.63e-24 98.6
MS.gene09950.t1 AT5G64530 39.695 131 63 4 7 136 3 118 1.81e-23 95.5
MS.gene09950.t1 AT2G43000 48.315 89 43 2 72 158 2 89 3.96e-23 95.5
MS.gene09950.t1 AT3G04420 37.662 154 86 5 8 158 4 150 1.03e-22 96.7
MS.gene09950.t1 AT1G02250 43.511 131 66 5 8 134 4 130 1.29e-22 97.8
MS.gene09950.t1 AT3G04420 37.662 154 86 5 8 158 4 150 2.62e-22 96.7
MS.gene09950.t1 AT3G10490 54.430 79 31 3 83 158 2 78 1.13e-21 94.7
MS.gene09950.t1 AT3G10490 54.430 79 31 3 83 158 2 78 1.13e-21 94.7
MS.gene09950.t1 AT1G01010 28.627 255 150 11 10 252 6 240 1.48e-19 89.7
MS.gene09950.t1 AT5G50820 36.301 146 66 6 1 136 10 138 7.76e-19 84.0
MS.gene09950.t1 AT1G02220 39.695 131 70 5 7 134 3 127 2.86e-18 85.5
MS.gene09950.t1 AT3G56530 28.947 152 102 4 7 156 52 199 5.79e-16 78.2
MS.gene09950.t1 AT5G14000 28.834 163 102 5 1 159 9 161 3.79e-14 70.9
MS.gene09950.t1 AT5G14000 30.714 140 85 4 1 136 9 140 9.25e-14 68.6
MS.gene09950.t1 AT3G04430 35.075 134 71 5 13 134 6 135 4.65e-12 64.7
MS.gene09950.t1 AT5G22290 40.845 71 36 2 89 159 2 66 4.71e-12 65.5

Find 60 sgRNAs with CRISPR-Local

Find 78 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAAGTATGCAAATGCTTTA+TGG 0.217473 5.2:+4507943 MS.gene09950:CDS
CATGAAGAATTATGCAAAAT+AGG 0.241059 5.2:+4507163 MS.gene09950:intron
TCAAGATCAAGATGCTTCTA+AGG 0.257448 5.2:+4508047 MS.gene09950:CDS
TCATTCCAATGAGACAAATA+TGG 0.283809 5.2:-4507318 None:intergenic
TGTTGGTATGATGCATTATA+AGG 0.290690 5.2:-4507745 None:intergenic
GAGCTACAAAAGCAGGATTC+TGG 0.293307 5.2:+4507260 MS.gene09950:CDS
CGCTTAGAAACAAATGAAAA+TGG 0.311609 5.2:+4507412 MS.gene09950:CDS
AGCTACAACAATGAGGAAAA+TGG 0.315574 5.2:+4507639 MS.gene09950:CDS
TCAAACCATATTTGTCTCAT+TGG 0.325097 5.2:+4507313 MS.gene09950:CDS
AAGACTCTTGTCTTCTATAA+AGG 0.338384 5.2:+4507343 MS.gene09950:CDS
CAATCAGATTTCTGACCATT+AGG 0.344528 5.2:-4507373 None:intergenic
GCATTTGCATACTTTGTTGC+TGG 0.361225 5.2:-4507936 None:intergenic
TAGACAAATTTGTTGCTTCT+CGG 0.362135 5.2:+4508019 MS.gene09950:CDS
TTTCTAGTTGTGGAAGTTGT+AGG 0.384400 5.2:-4507852 None:intergenic
GATGAGAAGAAACTCTGCTT+GGG 0.418707 5.2:-4507720 None:intergenic
AGATTGAAGTCACGTGTTCC+TGG 0.423511 5.2:-4508149 None:intergenic
GGTAGTGTTGTTGTTGATGT+TGG 0.424074 5.2:-4507762 None:intergenic
CCACGTGTCAATCTGACAAT+TGG 0.427216 5.2:-4508178 None:intergenic
ATTGCAAATTTATAGGAAGA+AGG 0.439363 5.2:+4507583 MS.gene09950:intron
AATTTCTCACACGTTCCTCC+TGG 0.441033 5.2:+4506790 MS.gene09950:CDS
CAAATTTATAGGAAGAAGGA+TGG 0.460174 5.2:+4507587 MS.gene09950:intron
TCAATGACTCAAGAACAATA+TGG 0.470954 5.2:+4507913 MS.gene09950:CDS
ACAACACTACCCTTGCAAAC+AGG 0.477080 5.2:+4507774 MS.gene09950:CDS
AAAATCAGAAATTGGTGGCC+AGG 0.482875 5.2:+4508131 MS.gene09950:CDS
TATAAAGGAAGAGCACCTAA+TGG 0.497610 5.2:+4507358 MS.gene09950:CDS
CTAATGGTCAGAAATCTGAT+TGG 0.500760 5.2:+4507374 MS.gene09950:CDS
GCAGGATTCTGGAAAGCTAC+AGG 0.509600 5.2:+4507271 MS.gene09950:CDS
CAAGTTCTTCATCGGTCGGA+TGG 0.514498 5.2:-4506822 None:intergenic
ACAAATAGAGCTACAAAAGC+AGG 0.518256 5.2:+4507253 MS.gene09950:CDS
TGATGAGAAGAAACTCTGCT+TGG 0.519246 5.2:-4507721 None:intergenic
CTACCCTTGCAAACAGGAGT+TGG 0.522959 5.2:+4507780 MS.gene09950:CDS
AGCATTGCAAAGGAGAATTG+AGG 0.523842 5.2:-4507876 None:intergenic
GTTGGTATGATGCATTATAA+GGG 0.529739 5.2:-4507744 None:intergenic
TGATCCAACTCCTGTTTGCA+AGG 0.531456 5.2:-4507784 None:intergenic
GTCGGATGGAAACGAAATCC+AGG 0.536029 5.2:-4506808 None:intergenic
TCTCTATAAGATTGAGCCAT+GGG 0.539211 5.2:+4506912 MS.gene09950:CDS
AACTTGTTGATCACTACCTC+AGG 0.545767 5.2:+4506839 MS.gene09950:CDS
GTCAATCTGACAATTGGAGT+TGG 0.548688 5.2:-4508172 None:intergenic
CAATGATTTACAAGCAGTAG+TGG 0.549631 5.2:+4507972 MS.gene09950:CDS
TGAAAATGGAACTACTCCTC+AGG 0.553926 5.2:+4507426 MS.gene09950:CDS
TAAGTACCTTGTAGATCCCA+TGG 0.571291 5.2:-4506928 None:intergenic
CAAGATCAAGATGCTTCTAA+GGG 0.572925 5.2:+4508048 MS.gene09950:CDS
CTATTTGTACGACTGCTCGT+TGG 0.573237 5.2:-4507238 None:intergenic
TAGTGGAGCAATCAAACGAA+TGG 0.580549 5.2:+4507989 MS.gene09950:CDS
ATCTCTATAAGATTGAGCCA+TGG 0.582288 5.2:+4506911 MS.gene09950:CDS
GAAGTGATGAACAAACTGAA+TGG 0.585532 5.2:+4507185 MS.gene09950:CDS
GTGATCAACAAGTTCTTCAT+CGG 0.592849 5.2:-4506830 None:intergenic
AAATTTATAGGAAGAAGGAT+GGG 0.606307 5.2:+4507588 MS.gene09950:intron
GATCCAACTCCTGTTTGCAA+GGG 0.606580 5.2:-4507783 None:intergenic
AACTAGTAGTTATTGTAATG+TGG 0.607704 5.2:+4508071 MS.gene09950:CDS
TCAACAAGTTCTTCATCGGT+CGG 0.617043 5.2:-4506826 None:intergenic
AAATGGACGATTCACCATGT+TGG 0.625967 5.2:+4507656 MS.gene09950:CDS
ATGAGAAGAAACTCTGCTTG+GGG 0.635709 5.2:-4507719 None:intergenic
ATTGAGCCATGGGATCTACA+AGG 0.653934 5.2:+4506922 MS.gene09950:CDS
AACGAATAGCTACAACAATG+AGG 0.658581 5.2:+4507632 MS.gene09950:CDS
AGTATGCAAATGCTTTATGG+TGG 0.663879 5.2:+4507946 MS.gene09950:CDS
GATGATAATGAGCATTGCAA+AGG 0.667877 5.2:-4507886 None:intergenic
CCAATTGTCAGATTGACACG+TGG 0.699000 5.2:+4508178 MS.gene09950:CDS
ACTTGATCATCATACCAACA+TGG 0.713321 5.2:-4507670 None:intergenic
GGATGGAAACGAAATCCAGG+AGG 0.779067 5.2:-4506805 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAAGTTAATTAAAATTCAAT+AGG - chr5.2:4507563-4507582 None:intergenic 15.0%
!! ATTATAAGTATTATTACCTG+AGG - chr5.2:4507445-4507464 None:intergenic 20.0%
!! TAACTTGATTGCAAATTTAT+AGG + chr5.2:4507576-4507595 MS.gene09950:intron 20.0%
!! TCTCTTATATATAAAATCGA+AGG + chr5.2:4507050-4507069 MS.gene09950:intron 20.0%
!!! ACACAACTATTGATTTTATT+AGG + chr5.2:4507527-4507546 MS.gene09950:intron 20.0%
! AAATTTATAGGAAGAAGGAT+GGG + chr5.2:4507588-4507607 MS.gene09950:intron 25.0%
! AACTAGTAGTTATTGTAATG+TGG + chr5.2:4508071-4508090 MS.gene09950:CDS 25.0%
! ATTGCAAATTTATAGGAAGA+AGG + chr5.2:4507583-4507602 MS.gene09950:intron 25.0%
! CATGAAGAATTATGCAAAAT+AGG + chr5.2:4507163-4507182 MS.gene09950:intron 25.0%
! GAATCCAAAAAATCAGAAAT+TGG + chr5.2:4508123-4508142 MS.gene09950:CDS 25.0%
!! CGGTCTTATAAAATAAAGTT+GGG + chr5.2:4506962-4506981 MS.gene09950:intron 25.0%
!!! CCAACTTTATTTTATAAGAC+CGG - chr5.2:4506964-4506983 None:intergenic 25.0%
!!! CTTGTTTTTCAGAAAAAGAA+AGG - chr5.2:4507485-4507504 None:intergenic 25.0%
AAGACTCTTGTCTTCTATAA+AGG + chr5.2:4507343-4507362 MS.gene09950:CDS 30.0%
CAAAGTATGCAAATGCTTTA+TGG + chr5.2:4507943-4507962 MS.gene09950:CDS 30.0%
CAAATTTATAGGAAGAAGGA+TGG + chr5.2:4507587-4507606 MS.gene09950:intron 30.0%
CGCTTAGAAACAAATGAAAA+TGG + chr5.2:4507412-4507431 MS.gene09950:CDS 30.0%
GGAAAAAGATAGCTTCTAAA+AGG + chr5.2:4506860-4506879 MS.gene09950:CDS 30.0%
GTTGGTATGATGCATTATAA+GGG - chr5.2:4507747-4507766 None:intergenic 30.0%
TCAAACCATATTTGTCTCAT+TGG + chr5.2:4507313-4507332 MS.gene09950:CDS 30.0%
TCAATGACTCAAGAACAATA+TGG + chr5.2:4507913-4507932 MS.gene09950:CDS 30.0%
TCATTCCAATGAGACAAATA+TGG - chr5.2:4507321-4507340 None:intergenic 30.0%
TCCAAAAAATCAGAAATTGG+TGG + chr5.2:4508126-4508145 MS.gene09950:CDS 30.0%
TGTTGGTATGATGCATTATA+AGG - chr5.2:4507748-4507767 None:intergenic 30.0%
! CCGGTCTTATAAAATAAAGT+TGG + chr5.2:4506961-4506980 MS.gene09950:intron 30.0%
!! TAGACAAATTTGTTGCTTCT+CGG + chr5.2:4508019-4508038 MS.gene09950:CDS 30.0%
!!! CTTTATTTTATAAGACCGGA+AGG - chr5.2:4506960-4506979 None:intergenic 30.0%
AACGAATAGCTACAACAATG+AGG + chr5.2:4507632-4507651 MS.gene09950:CDS 35.0%
ACAAATAGAGCTACAAAAGC+AGG + chr5.2:4507253-4507272 MS.gene09950:CDS 35.0%
ACTTGATCATCATACCAACA+TGG - chr5.2:4507673-4507692 None:intergenic 35.0%
AGCTACAACAATGAGGAAAA+TGG + chr5.2:4507639-4507658 MS.gene09950:CDS 35.0%
AGGTACTTAATTACTCCTTC+CGG + chr5.2:4506942-4506961 MS.gene09950:intron 35.0%
AGTATGCAAATGCTTTATGG+TGG + chr5.2:4507946-4507965 MS.gene09950:CDS 35.0%
ATCTCTATAAGATTGAGCCA+TGG + chr5.2:4506911-4506930 MS.gene09950:CDS 35.0%
CAAGATCAAGATGCTTCTAA+GGG + chr5.2:4508048-4508067 MS.gene09950:CDS 35.0%
CAATCAGATTTCTGACCATT+AGG - chr5.2:4507376-4507395 None:intergenic 35.0%
CAATGATTTACAAGCAGTAG+TGG + chr5.2:4507972-4507991 MS.gene09950:CDS 35.0%
CTAATGGTCAGAAATCTGAT+TGG + chr5.2:4507374-4507393 MS.gene09950:CDS 35.0%
GAAGTGATGAACAAACTGAA+TGG + chr5.2:4507185-4507204 MS.gene09950:CDS 35.0%
GTGATCAACAAGTTCTTCAT+CGG - chr5.2:4506833-4506852 None:intergenic 35.0%
TCAAGATCAAGATGCTTCTA+AGG + chr5.2:4508047-4508066 MS.gene09950:CDS 35.0%
TCTCTATAAGATTGAGCCAT+GGG + chr5.2:4506912-4506931 MS.gene09950:CDS 35.0%
! GATGATAATGAGCATTGCAA+AGG - chr5.2:4507889-4507908 None:intergenic 35.0%
! TAGAAGCTATCTTTTTCCTG+AGG - chr5.2:4506858-4506877 None:intergenic 35.0%
!! TATAAAGGAAGAGCACCTAA+TGG + chr5.2:4507358-4507377 MS.gene09950:CDS 35.0%
!! TTTCTAGTTGTGGAAGTTGT+AGG - chr5.2:4507855-4507874 None:intergenic 35.0%
!!! GAATTGAGGTTTTCTAGTTG+TGG - chr5.2:4507865-4507884 None:intergenic 35.0%
!!! GCCACCAATTTCTGATTTTT+TGG - chr5.2:4508130-4508149 None:intergenic 35.0%
AAATGGACGATTCACCATGT+TGG + chr5.2:4507656-4507675 MS.gene09950:CDS 40.0%
AGCATTGCAAAGGAGAATTG+AGG - chr5.2:4507879-4507898 None:intergenic 40.0%
ATGAGAAGAAACTCTGCTTG+GGG - chr5.2:4507722-4507741 None:intergenic 40.0%
GATGAGAAGAAACTCTGCTT+GGG - chr5.2:4507723-4507742 None:intergenic 40.0%
GCATTTGCATACTTTGTTGC+TGG - chr5.2:4507939-4507958 None:intergenic 40.0%
GTCAATCTGACAATTGGAGT+TGG - chr5.2:4508175-4508194 None:intergenic 40.0%
TAAGTACCTTGTAGATCCCA+TGG - chr5.2:4506931-4506950 None:intergenic 40.0%
TAGTGGAGCAATCAAACGAA+TGG + chr5.2:4507989-4508008 MS.gene09950:CDS 40.0%
TCAACAAGTTCTTCATCGGT+CGG - chr5.2:4506829-4506848 None:intergenic 40.0%
TGAAAATGGAACTACTCCTC+AGG + chr5.2:4507426-4507445 MS.gene09950:CDS 40.0%
TGATGAGAAGAAACTCTGCT+TGG - chr5.2:4507724-4507743 None:intergenic 40.0%
! AAAATCAGAAATTGGTGGCC+AGG + chr5.2:4508131-4508150 MS.gene09950:CDS 40.0%
! GGTAGTGTTGTTGTTGATGT+TGG - chr5.2:4507765-4507784 None:intergenic 40.0%
!! AACTTGTTGATCACTACCTC+AGG + chr5.2:4506839-4506858 MS.gene09950:CDS 40.0%
AATTTCTCACACGTTCCTCC+TGG + chr5.2:4506790-4506809 MS.gene09950:CDS 45.0%
ACAACACTACCCTTGCAAAC+AGG + chr5.2:4507774-4507793 MS.gene09950:CDS 45.0%
AGATTGAAGTCACGTGTTCC+TGG - chr5.2:4508152-4508171 None:intergenic 45.0%
ATTGAGCCATGGGATCTACA+AGG + chr5.2:4506922-4506941 MS.gene09950:CDS 45.0%
CCAATTGTCAGATTGACACG+TGG + chr5.2:4508178-4508197 MS.gene09950:CDS 45.0%
CCACGTGTCAATCTGACAAT+TGG - chr5.2:4508181-4508200 None:intergenic 45.0%
CTATTTGTACGACTGCTCGT+TGG - chr5.2:4507241-4507260 None:intergenic 45.0%
GAGCTACAAAAGCAGGATTC+TGG + chr5.2:4507260-4507279 MS.gene09950:CDS 45.0%
GATCCAACTCCTGTTTGCAA+GGG - chr5.2:4507786-4507805 None:intergenic 45.0%
TGATCCAACTCCTGTTTGCA+AGG - chr5.2:4507787-4507806 None:intergenic 45.0%
!! AATAAATTAATATATAATCT+TGG - chr5.2:4507095-4507114 None:intergenic 5.0%
CAAGTTCTTCATCGGTCGGA+TGG - chr5.2:4506825-4506844 None:intergenic 50.0%
CTACCCTTGCAAACAGGAGT+TGG + chr5.2:4507780-4507799 MS.gene09950:CDS 50.0%
GGATGGAAACGAAATCCAGG+AGG - chr5.2:4506808-4506827 None:intergenic 50.0%
GTCGGATGGAAACGAAATCC+AGG - chr5.2:4506811-4506830 None:intergenic 50.0%
! GCAGGATTCTGGAAAGCTAC+AGG + chr5.2:4507271-4507290 MS.gene09950:CDS 50.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 4506784 4508206 4506784 ID=MS.gene09950
chr5.2 mRNA 4506784 4508206 4506784 ID=MS.gene09950.t1;Parent=MS.gene09950
chr5.2 exon 4506784 4506943 4506784 ID=MS.gene09950.t1.exon1;Parent=MS.gene09950.t1
chr5.2 CDS 4506784 4506943 4506784 ID=cds.MS.gene09950.t1;Parent=MS.gene09950.t1
chr5.2 exon 4507170 4507447 4507170 ID=MS.gene09950.t1.exon2;Parent=MS.gene09950.t1
chr5.2 CDS 4507170 4507447 4507170 ID=cds.MS.gene09950.t1;Parent=MS.gene09950.t1
chr5.2 exon 4507598 4508206 4507598 ID=MS.gene09950.t1.exon3;Parent=MS.gene09950.t1
chr5.2 CDS 4507598 4508206 4507598 ID=cds.MS.gene09950.t1;Parent=MS.gene09950.t1
Gene Sequence

>MS.gene09950

ATGAACAATTTCTCACACGTTCCTCCTGGATTTCGTTTCCATCCGACCGATGAAGAACTTGTTGATCACTACCTCAGGAAAAAGATAGCTTCTAAAAGGATTGATCTTGATATCATTAAAGATGTCGATCTCTATAAGATTGAGCCATGGGATCTACAAGGTACTTAATTACTCCTTCCGGTCTTATAAAATAAAGTTGGGTCAACAAAAGTTGACATGTCTGATTCAAATAAAACTAGATACATTAACTTTTATTGACATAACAGTCTCTTATATATAAAATCGAAGGAGTATTTACAATTCTAACTCCAAGATTATATATTAATTTATTAATAAATAAAAATAGATACTCACATTTGTTGCTTGTTTTGTGTTGAAACATGAAGAATTATGCAAAATAGGAAGTGATGAACAAACTGAATGGTACTTCTTCAGTCATAAAGATAAGAAGTATCCAACGAGCAGTCGTACAAATAGAGCTACAAAAGCAGGATTCTGGAAAGCTACAGGAAGAGACAAAGCAATTTACTCAAACCATATTTGTCTCATTGGAATGAGAAAGACTCTTGTCTTCTATAAAGGAAGAGCACCTAATGGTCAGAAATCTGATTGGATCATGCATGAGTATCGCTTAGAAACAAATGAAAATGGAACTACTCCTCAGGTAATAATACTTATAATAAGCACATTTAATATTTCCTTTCTTTTTCTGAAAAACAAGAATATATTATCTCTATCTATCTACACAACTATTGATTTTATTAGGTACAAACACACCTATTGAATTTTAATTAACTTGATTGCAAATTTATAGGAAGAAGGATGGGTTGTGTGTAAAGTGTTCAAGAAACGAATAGCTACAACAATGAGGAAAATGGACGATTCACCATGTTGGTATGATGATCAAGTATCATACATGCAATCAGATCTTGAATCCCCAAGCAGAGTTTCTTCTCATCACCCTTATAATGCATCATACCAACATCAACAACAACACTACCCTTGCAAACAGGAGTTGGATCAATTGCAATACAATATACACATTAATAATAATGATGCTAATAATTTCCTACAACTTCCACAACTAGAAAACCTCAATTCTCCTTTGCAATGCTCATTATCATCACATTCAATGACTCAAGAACAATATGGCCAGCAACAAAGTATGCAAATGCTTTATGGTGGTAGCAATGATTTACAAGCAGTAGTGGAGCAATCAAACGAATGGAAAGCACTAGACAAATTTGTTGCTTCTCGGCTAAGTCAAGATCAAGATGCTTCTAAGGGAACTAGTAGTTATTGTAATGTGGCTCAACAAATTGCTTTGCTATCAAATGATGAATCCAAAAAATCAGAAATTGGTGGCCAGGAACACGTGACTTCAATCTCCAACTCCAATTGTCAGATTGACACGTGGAAATGA
Protein sequence

>MS.gene09950.t1

MNNFSHVPPGFRFHPTDEELVDHYLRKKIASKRIDLDIIKDVDLYKIEPWDLQELCKIGSDEQTEWYFFSHKDKKYPTSSRTNRATKAGFWKATGRDKAIYSNHICLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLETNENGTTPQEEGWVVCKVFKKRIATTMRKMDDSPCWYDDQVSYMQSDLESPSRVSSHHPYNASYQHQQQHYPCKQELDQLQYNIHINNNDANNFLQLPQLENLNSPLQCSLSSHSMTQEQYGQQQSMQMLYGGSNDLQAVVEQSNEWKALDKFVASRLSQDQDASKGTSSYCNVAQQIALLSNDESKKSEIGGQEHVTSISNSNCQIDTWK