AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene20055

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene20055.t1 MTR_2g099990 63.251 283 84 4 33 302 45 320 2.55e-118 352
MS.gene20055.t1 MTR_4g059870 54.227 343 111 8 7 304 6 347 3.49e-114 342
MS.gene20055.t1 MTR_8g017210 57.402 331 102 8 27 329 55 374 4.72e-114 342
MS.gene20055.t1 MTR_1g094115 87.500 168 20 1 34 200 47 214 5.43e-112 338
MS.gene20055.t1 MTR_1g016010 62.191 283 84 9 30 308 38 301 1.30e-108 326
MS.gene20055.t1 MTR_1g112270 86.875 160 21 0 37 196 47 206 8.72e-108 328
MS.gene20055.t1 MTR_2g093960 62.403 258 74 8 34 283 32 274 7.89e-105 315
MS.gene20055.t1 MTR_1g112270 81.287 171 21 1 37 196 47 217 4.05e-104 319
MS.gene20055.t1 MTR_2g090745 50.729 343 105 7 42 324 15 353 1.62e-102 310
MS.gene20055.t1 MTR_2g099990 61.240 258 80 4 58 302 1 251 2.48e-101 306
MS.gene20055.t1 MTR_1g094115 76.786 168 21 2 34 200 47 197 8.45e-94 290
MS.gene20055.t1 MTR_2g017720 77.391 115 21 1 44 158 323 432 3.94e-56 190
MS.gene20055.t1 MTR_3g102000 67.677 99 25 2 61 155 36 131 8.87e-39 139
MS.gene20055.t1 MTR_5g030560 86.667 45 6 0 44 88 16 60 2.07e-22 90.5
MS.gene20055.t1 MTR_1g093095 34.503 171 95 5 28 186 84 249 3.33e-21 93.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene20055.t1 AT5G03150 61.489 309 71 9 3 283 4 292 1.99e-117 350
MS.gene20055.t1 AT3G50700 85.549 173 25 0 24 196 24 196 2.70e-113 338
MS.gene20055.t1 AT5G66730 75.728 206 43 2 11 209 8 213 2.31e-111 335
MS.gene20055.t1 AT1G55110 62.799 293 84 8 30 306 58 341 2.58e-111 333
MS.gene20055.t1 AT1G55110 62.799 293 84 8 30 306 58 341 2.58e-111 333
MS.gene20055.t1 AT1G55110 62.799 293 84 8 30 306 58 341 2.58e-111 333
MS.gene20055.t1 AT5G44160 52.676 355 109 8 28 329 32 380 1.13e-110 332
MS.gene20055.t1 AT3G45260 84.181 177 23 2 33 204 38 214 2.01e-108 325
MS.gene20055.t1 AT3G45260 84.181 177 23 2 33 204 38 214 2.01e-108 325
MS.gene20055.t1 AT1G03840 78.610 187 38 2 28 213 36 221 2.57e-108 327
MS.gene20055.t1 AT3G13810 86.826 167 21 1 31 196 48 214 4.99e-106 321
MS.gene20055.t1 AT3G13810 86.826 167 21 1 31 196 67 233 5.47e-106 322
MS.gene20055.t1 AT3G13810 86.826 167 21 1 31 196 67 233 5.47e-106 322
MS.gene20055.t1 AT1G14580 82.738 168 26 1 29 196 51 215 6.74e-106 320
MS.gene20055.t1 AT1G14580 82.738 168 26 1 29 196 51 215 6.74e-106 320
MS.gene20055.t1 AT3G13810 86.826 167 21 1 31 196 62 228 8.75e-106 321
MS.gene20055.t1 AT2G02070 83.529 170 26 1 34 203 52 219 8.75e-106 324
MS.gene20055.t1 AT2G02070 83.529 170 26 1 34 203 52 219 8.75e-106 324
MS.gene20055.t1 AT1G14580 83.537 164 27 0 34 197 67 230 1.22e-105 320
MS.gene20055.t1 AT4G02670 81.714 175 31 1 34 207 53 227 1.09e-104 315
MS.gene20055.t1 AT1G03840 77.540 187 38 3 28 213 36 219 1.11e-104 318
MS.gene20055.t1 AT4G02670 81.714 175 31 1 34 207 55 229 1.13e-104 315
MS.gene20055.t1 AT2G02080 70.647 201 46 3 7 197 20 217 1.54e-104 318
MS.gene20055.t1 AT2G02080 70.647 201 46 3 7 197 20 217 1.54e-104 318
MS.gene20055.t1 AT2G02080 70.647 201 46 3 7 197 20 217 1.54e-104 318
MS.gene20055.t1 AT2G02080 70.647 201 46 3 7 197 20 217 1.54e-104 318
MS.gene20055.t1 AT5G60470 78.889 180 30 2 25 196 24 203 6.40e-104 314
MS.gene20055.t1 AT5G60470 77.128 188 34 3 25 203 28 215 6.47e-104 315
MS.gene20055.t1 AT5G44160 51.622 339 106 7 44 329 8 341 1.08e-102 310
MS.gene20055.t1 AT3G13810 88.235 153 17 1 45 196 68 220 1.05e-97 300
MS.gene20055.t1 AT3G13810 88.235 153 17 1 45 196 82 234 1.62e-97 300
MS.gene20055.t1 AT5G60470 83.007 153 25 1 45 196 46 198 8.20e-95 291
MS.gene20055.t1 AT2G02080 81.295 139 26 0 58 196 1 139 3.77e-88 273
MS.gene20055.t1 AT2G02080 81.295 139 26 0 58 196 1 139 3.77e-88 273
MS.gene20055.t1 AT1G68130 56.842 190 74 3 32 219 39 222 1.90e-74 237
MS.gene20055.t1 AT1G25250 64.780 159 53 2 32 187 31 189 1.23e-73 234
MS.gene20055.t1 AT2G01940 63.190 163 58 2 32 192 42 204 1.51e-73 236
MS.gene20055.t1 AT2G01940 62.195 164 59 3 32 192 42 205 6.32e-70 226
MS.gene20055.t1 AT1G25250 65.306 147 48 2 44 187 20 166 7.72e-69 221
MS.gene20055.t1 AT1G68130 52.817 142 59 3 80 219 1 136 1.67e-45 159
MS.gene20055.t1 AT2G01940 60.870 115 43 2 80 192 1 115 4.08e-44 156
MS.gene20055.t1 AT1G25250 62.162 111 39 2 80 187 1 111 4.75e-44 155
MS.gene20055.t1 AT1G34370 29.918 244 124 8 43 244 14 252 1.43e-24 102
MS.gene20055.t1 AT1G34370 29.918 244 124 8 43 244 224 462 4.96e-24 103
MS.gene20055.t1 AT1G34370 29.918 244 124 8 43 244 224 462 4.96e-24 103
MS.gene20055.t1 AT5G22890 32.530 166 96 4 35 186 191 354 1.32e-22 98.6
MS.gene20055.t1 AT1G13290 34.211 152 88 5 55 195 93 243 1.77e-19 88.6
MS.gene20055.t1 AT1G08290 35.849 159 85 7 44 186 155 312 1.29e-18 86.7
MS.gene20055.t1 AT1G34790 33.333 180 104 7 47 218 129 300 1.36e-18 85.9
MS.gene20055.t1 AT3G20880 34.247 146 86 5 50 186 243 387 3.61e-18 85.9
MS.gene20055.t1 AT1G51220 33.562 146 87 5 50 186 165 309 5.75e-18 84.7
MS.gene20055.t1 AT3G57670 34.247 146 86 5 50 186 204 348 7.94e-18 84.7

Find 78 sgRNAs with CRISPR-Local

Find 136 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGCTGGTTTGTGGTGGATT+AGG 0.210609 7.2:+11224982 None:intergenic
CCATGATGCGGCCAGGGCCT+TGG 0.232187 7.2:-11224618 MS.gene20055:CDS
AGATTGAACTGCATATTTCT+TGG 0.249648 7.2:+11224523 None:intergenic
TGCTCACAAATGAATATTCT+TGG 0.256662 7.2:-11225069 None:intergenic
GCTAAAATGTTTCTTTATTC+CGG 0.260327 7.2:+11224586 None:intergenic
TAGATTTCTCTTCTTCTTGC+TGG 0.261742 7.2:+11224966 None:intergenic
CTTCAGAAAGCAGCTCAAAT+TGG 0.266190 7.2:-11223334 MS.gene20055:CDS
TGCTGGTTTGTGGTGGATTA+GGG 0.287287 7.2:+11224983 None:intergenic
TATTAACCTCATCATGGTTT+TGG 0.287752 7.2:+11223224 None:intergenic
TTCGTCGCCATTAGAGTCTT+TGG 0.293737 7.2:+11224797 None:intergenic
GCTGAAGATTCTGATCTCTT+TGG 0.295858 7.2:+11224741 None:intergenic
GTTTGTGGTGGATTAGGGTT+AGG 0.305769 7.2:+11224988 None:intergenic
CAACAAAGAACCAAGGAAAA+AGG 0.327722 7.2:-11224672 MS.gene20055:CDS
CTCTTCTTCTTGCTGGTTTG+TGG 0.328936 7.2:+11224973 None:intergenic
TATTTGACGACTCTTCATTC+TGG 0.329154 7.2:+11223596 None:intergenic
TTAATATTACCTGGTGTTCC+TGG 0.358554 7.2:+11224943 None:intergenic
GAAAACATGGTGAGAAGAAA+TGG 0.363622 7.2:-11224562 MS.gene20055:CDS
AAACCATGATGAGGTTAATA+TGG 0.368833 7.2:-11223221 MS.gene20055:CDS
CATGATGCGGCCAGGGCCTT+GGG 0.370145 7.2:-11224617 MS.gene20055:CDS
TTCTGGAAATTTAGAGTTGT+AGG 0.385136 7.2:+11223613 None:intergenic
GTGTCCACCATGATGCGGCC+AGG 0.413040 7.2:-11224625 MS.gene20055:CDS
TCTTTCTCCAAAGACTCTAA+TGG 0.414643 7.2:-11224804 MS.gene20055:CDS
TGCATATTTCGCAGACGAAT+CGG 0.417602 7.2:+11224774 None:intergenic
TCACTTGATCATGTTTCATC+AGG 0.423280 7.2:-11223415 MS.gene20055:CDS
TTTGTGGTGGATTAGGGTTA+GGG 0.429876 7.2:+11224989 None:intergenic
AATATGCAGTTCAATCTGAT+TGG 0.433651 7.2:-11224517 MS.gene20055:CDS
TGGTGGACACAGGTCTTCTC+CGG 0.437364 7.2:+11224638 None:intergenic
TTCAACCACAGTGACAAGTT+TGG 0.441620 7.2:+11223472 None:intergenic
GACCTTTGCTTTAGCTTCCA+TGG 0.442243 7.2:+11224695 None:intergenic
TTGAAGTTTGTCAAAACCTC+CGG 0.458884 7.2:+11225020 None:intergenic
GGTGAGGTCACCCAAGGCCC+TGG 0.470064 7.2:+11224607 None:intergenic
GATAATGTTTGTGATAGTAG+TGG 0.474671 7.2:-11222746 MS.gene20055:CDS
GTGGAAGAGGATAGTGAAAA+GGG 0.477404 7.2:+11225042 None:intergenic
TTCTTCTTGCTGGTTTGTGG+TGG 0.478291 7.2:+11224976 None:intergenic
CTATGGTTGGTAATTCTAGT+GGG 0.487415 7.2:-11223138 MS.gene20055:CDS
TTTGCTTTAGCTTCCATGGT+AGG 0.488944 7.2:+11224699 None:intergenic
GTCAAAACCTCCGGTGGAAG+AGG 0.490780 7.2:+11225029 None:intergenic
AGGGCCTTGGGTGACCTCAC+CGG 0.495108 7.2:-11224605 MS.gene20055:CDS
CCAAGGCCCTGGCCGCATCA+TGG 0.496782 7.2:+11224618 None:intergenic
TGTCCACCATGATGCGGCCA+GGG 0.498285 7.2:-11224624 MS.gene20055:CDS
TAGTAGTACTAGTGCAGCTA+TGG 0.503693 7.2:-11223155 MS.gene20055:CDS
GCTATGGTTGGTAATTCTAG+TGG 0.507355 7.2:-11223139 MS.gene20055:CDS
GGTGGAAGAGGATAGTGAAA+AGG 0.509534 7.2:+11225041 None:intergenic
CATTCATCTCAAACATGCAG+TGG 0.512418 7.2:+11222720 None:intergenic
AGAGCAATGACTTCAGCATC+CGG 0.519151 7.2:+11224824 None:intergenic
TGACCATATTAACCTCATCA+TGG 0.523171 7.2:+11223218 None:intergenic
CAACAATTTAGTCCACATGC+AGG 0.543450 7.2:-11223511 MS.gene20055:CDS
GCTGCACTAGTACTACTACT+TGG 0.544040 7.2:+11223160 None:intergenic
TAAACTCGTTGTTTGTGTAG+AGG 0.545158 7.2:+11223249 None:intergenic
ATAATGTTTGTGATAGTAGT+GGG 0.561142 7.2:-11222745 MS.gene20055:CDS
GGCCGCATCATGGTGGACAC+AGG 0.576015 7.2:+11224628 None:intergenic
AATCTTCAGCTTCATAGAAG+AGG 0.576550 7.2:-11224728 MS.gene20055:CDS
TATTCCGGTGAGGTCACCCA+AGG 0.589649 7.2:+11224601 None:intergenic
AGTACTAGTGCAGCTATGGT+TGG 0.590350 7.2:-11223151 MS.gene20055:CDS
GGTGGACACAGGTCTTCTCC+GGG 0.591060 7.2:+11224639 None:intergenic
AGAAATCTACCAGGAACACC+AGG 0.591098 7.2:-11224952 MS.gene20055:intron
GAAACATGATCAAGTGAATG+TGG 0.592443 7.2:+11223421 None:intergenic
TGCTCATGAAATCCTGCATG+TGG 0.593771 7.2:+11223499 None:intergenic
ACTGTGGTACACTCTTCTCT+AGG 0.600160 7.2:-11224451 MS.gene20055:intron
TCACTATCCTCTTCCACCGG+AGG 0.603318 7.2:-11225036 MS.gene20055:CDS
GAAGAGGTCACAACCTACCA+TGG 0.609397 7.2:-11224712 MS.gene20055:CDS
TTTAAACCAAAACCATGATG+AGG 0.609478 7.2:-11223230 MS.gene20055:CDS
ATTCATCTCAAACATGCAGT+GGG 0.610037 7.2:+11222721 None:intergenic
GTCTGCGAAATATGCAACAA+AGG 0.612364 7.2:-11224767 MS.gene20055:CDS
AGAAGTGCAGTAGCTGACAT+TGG 0.615729 7.2:+11223355 None:intergenic
TACCATGGAAGCTAAAGCAA+AGG 0.618651 7.2:-11224697 MS.gene20055:CDS
AATGTTTCTTTATTCCGGTG+AGG 0.626985 7.2:+11224591 None:intergenic
CATGGATTGATATCATCTCA+AGG 0.627308 7.2:-11223547 MS.gene20055:CDS
AAGTTTGTCAAAACCTCCGG+TGG 0.633133 7.2:+11225023 None:intergenic
GACCTGTGTCCACCATGATG+CGG 0.639865 7.2:-11224630 MS.gene20055:CDS
ACACAAACTAGTTTGTCACA+TGG 0.646370 7.2:-11223565 MS.gene20055:CDS
AAAGCTCACACTAAAACTTG+TGG 0.646859 7.2:-11224494 MS.gene20055:CDS
AAAGGTCCAACAAAGAACCA+AGG 0.658252 7.2:-11224679 MS.gene20055:CDS
AAGAAGAAGAGAAATCTACC+AGG 0.661464 7.2:-11224961 MS.gene20055:CDS
AGGCCCTGGCCGCATCATGG+TGG 0.664444 7.2:+11224621 None:intergenic
AGAGAATATAAGTGTGACTG+TGG 0.678389 7.2:-11224467 MS.gene20055:CDS
TGGAAGAGGATAGTGAAAAG+GGG 0.698551 7.2:+11225043 None:intergenic
AAAGACCAAACTTGTCACTG+TGG 0.746204 7.2:-11223477 MS.gene20055:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATTTATTAAATATTAAA+AGG + chr7.2:11222878-11222897 None:intergenic 0.0%
!! ATAATAGCATTAAATTATAA+TGG - chr7.2:11223907-11223926 MS.gene20055:intron 10.0%
!!! TTATTAACAAATTTTTACAT+CGG - chr7.2:11223445-11223464 MS.gene20055:CDS 10.0%
!! AAAGTTTAATTAATATTACC+TGG + chr7.2:11222852-11222871 None:intergenic 15.0%
!! TGTTAAATTATAAAGAAAAG+TGG - chr7.2:11224781-11224800 MS.gene20055:CDS 15.0%
!!! TTTCAAATATGTTTTGAATT+TGG - chr7.2:11222919-11222938 MS.gene20055:intron 15.0%
!!! TTTTCAATATCAAAAGATTT+TGG - chr7.2:11223388-11223407 MS.gene20055:CDS 15.0%
!! AAAATAGTACTACAATTTGA+TGG + chr7.2:11223962-11223981 None:intergenic 20.0%
!! ATATAGTCAACACTTAATTA+AGG + chr7.2:11224990-11225009 None:intergenic 20.0%
!! CAAATTAAGAAAAGTTGTTA+AGG - chr7.2:11223738-11223757 MS.gene20055:intron 20.0%
!! CAAGTTCAAATAAAAAGATA+TGG + chr7.2:11223831-11223850 None:intergenic 20.0%
!! TTGTGAATAATTAAATTCAG+AGG + chr7.2:11223721-11223740 None:intergenic 20.0%
!!! AAACTTGAGAAAATTTTCAA+TGG - chr7.2:11224840-11224859 MS.gene20055:intron 20.0%
!!! AAACTTGAGAAAATTTTCAA+TGG + chr7.2:11224859-11224840 None:intergenic 20.0%
!!! ATAAAAACTTGTTTCGTTAA+AGG - chr7.2:11223852-11223871 MS.gene20055:intron 20.0%
!!! CTATTTTTTTTGCCTATATA+TGG - chr7.2:11223975-11223994 MS.gene20055:intron 20.0%
!!! GTTGACTATATTGATATTTT+TGG - chr7.2:11224999-11225018 MS.gene20055:CDS 20.0%
! AGTTTAAATCAATTCAATGC+TGG - chr7.2:11224940-11224959 MS.gene20055:intron 25.0%
! ATAAAAAGATATGGTAGTCT+AGG + chr7.2:11223822-11223841 None:intergenic 25.0%
! ATAATGTTTGTGATAGTAGT+GGG - chr7.2:11225038-11225057 MS.gene20055:CDS 25.0%
! ATGAATTGCATGGTTAAAAT+TGG + chr7.2:11223527-11223546 None:intergenic 25.0%
! GCTAAAATGTTTCTTTATTC+CGG + chr7.2:11223200-11223219 None:intergenic 25.0%
! GTAAATGATTAGGTTTCTAA+TGG - chr7.2:11224060-11224079 MS.gene20055:intron 25.0%
! GTTTAAATCAATTCAATGCT+GGG - chr7.2:11224941-11224960 MS.gene20055:intron 25.0%
! TATAAAGAAAAGTGGTTAGT+GGG - chr7.2:11224789-11224808 MS.gene20055:CDS 25.0%
! TTATAAAGAAAAGTGGTTAG+TGG - chr7.2:11224788-11224807 MS.gene20055:CDS 25.0%
!! ATGGTTAAAATTGGTTTAAC+TGG + chr7.2:11223518-11223537 None:intergenic 25.0%
!! TTAATGGTAGAGATTTTCAA+TGG - chr7.2:11224814-11224833 MS.gene20055:CDS 25.0%
!! TTTTTGCCTATATATGGTTA+TGG - chr7.2:11223981-11224000 MS.gene20055:intron 25.0%
!!! AAACATTTTAGCAGAAAACA+TGG - chr7.2:11223208-11223227 MS.gene20055:CDS 25.0%
!!! GATTAATCTGTTGATTTTCT+TGG + chr7.2:11224337-11224356 None:intergenic 25.0%
!!! TAAATCTTTTGTTTTCGATG+TGG - chr7.2:11223580-11223599 MS.gene20055:CDS 25.0%
AAACCATGATGAGGTTAATA+TGG - chr7.2:11224562-11224581 MS.gene20055:CDS 30.0%
AAACTTCCACTAAAAATGGA+AGG + chr7.2:11224497-11224516 None:intergenic 30.0%
AATATGCAGTTCAATCTGAT+TGG - chr7.2:11223266-11223285 MS.gene20055:CDS 30.0%
ACCAAAACTTCCACTAAAAA+TGG + chr7.2:11224501-11224520 None:intergenic 30.0%
ACTGCATAGTGTAAATGATT+AGG - chr7.2:11224050-11224069 MS.gene20055:intron 30.0%
ACTTTCTCTCTCATATTTGA+TGG + chr7.2:11224758-11224777 None:intergenic 30.0%
AGATTGAACTGCATATTTCT+TGG + chr7.2:11223263-11223282 None:intergenic 30.0%
ATCAGTATGAATGAATTGCA+TGG + chr7.2:11223537-11223556 None:intergenic 30.0%
CCATAACCATAACCATATAT+AGG + chr7.2:11223990-11224009 None:intergenic 30.0%
CCTATATATGGTTATGGTTA+TGG - chr7.2:11223987-11224006 MS.gene20055:intron 30.0%
GATAATGTTTGTGATAGTAG+TGG - chr7.2:11225037-11225056 MS.gene20055:CDS 30.0%
TAGTTTCAAAGACAAAAGTC+AGG - chr7.2:11223416-11223435 MS.gene20055:CDS 30.0%
TTTAAACCAAAACCATGATG+AGG - chr7.2:11224553-11224572 MS.gene20055:CDS 30.0%
! AATGGTACATTTTATTGCAC+AGG - chr7.2:11224078-11224097 MS.gene20055:intron 30.0%
! TATTAACCTCATCATGGTTT+TGG + chr7.2:11224562-11224581 None:intergenic 30.0%
! TGAGAAAATTTTCAATGGAG+AGG - chr7.2:11224845-11224864 MS.gene20055:intron 30.0%
! TTCTGGAAATTTAGAGTTGT+AGG + chr7.2:11224173-11224192 None:intergenic 30.0%
! TTTGATGGTTGAGATTTCAA+TGG + chr7.2:11224743-11224762 None:intergenic 30.0%
! TTTTTCTGATGTTGTGCAAA+TGG - chr7.2:11224391-11224410 MS.gene20055:intron 30.0%
!! ACTAATCCTTCCATTTTTAG+TGG - chr7.2:11224488-11224507 MS.gene20055:CDS 30.0%
!!! TCCATTTTTAGTGGAAGTTT+TGG - chr7.2:11224497-11224516 MS.gene20055:CDS 30.0%
AAAGCTCACACTAAAACTTG+TGG - chr7.2:11223289-11223308 MS.gene20055:CDS 35.0%
AAGAAGAAGAGAAATCTACC+AGG - chr7.2:11222822-11222841 MS.gene20055:intron 35.0%
AATCTTCAGCTTCATAGAAG+AGG - chr7.2:11223055-11223074 MS.gene20055:intron 35.0%
AATGTTTCTTTATTCCGGTG+AGG + chr7.2:11223195-11223214 None:intergenic 35.0%
ACTCATCATCGATGAACTTA+TGG + chr7.2:11224923-11224942 None:intergenic 35.0%
AGAGAATATAAGTGTGACTG+TGG - chr7.2:11223316-11223335 MS.gene20055:CDS 35.0%
CAACAAAGAACCAAGGAAAA+AGG - chr7.2:11223111-11223130 MS.gene20055:intron 35.0%
GAAAACATGGTGAGAAGAAA+TGG - chr7.2:11223221-11223240 MS.gene20055:CDS 35.0%
GAAACATGATCAAGTGAATG+TGG + chr7.2:11224365-11224384 None:intergenic 35.0%
GGATTGAAATACTACAGATC+CGG - chr7.2:11222940-11222959 MS.gene20055:intron 35.0%
TAAACTCGTTGTTTGTGTAG+AGG + chr7.2:11224537-11224556 None:intergenic 35.0%
TAGATTTCTCTTCTTCTTGC+TGG + chr7.2:11222820-11222839 None:intergenic 35.0%
TATTTGACGACTCTTCATTC+TGG + chr7.2:11224190-11224209 None:intergenic 35.0%
TCACTTGATCATGTTTCATC+AGG - chr7.2:11224368-11224387 MS.gene20055:intron 35.0%
TCTTTCTCCAAAGACTCTAA+TGG - chr7.2:11222979-11222998 MS.gene20055:intron 35.0%
TGACCATATTAACCTCATCA+TGG + chr7.2:11224568-11224587 None:intergenic 35.0%
TTAATATTACCTGGTGTTCC+TGG + chr7.2:11222843-11222862 None:intergenic 35.0%
TTGAAGTTTGTCAAAACCTC+CGG + chr7.2:11222766-11222785 None:intergenic 35.0%
! ACACAAACTAGTTTGTCACA+TGG - chr7.2:11224218-11224237 MS.gene20055:intron 35.0%
! AGGTAGAAATTGATGGTTAC+GGG + chr7.2:11224878-11224897 None:intergenic 35.0%
! CAGATGTATACCTTTTTCCT+TGG + chr7.2:11223124-11223143 None:intergenic 35.0%
! CATGGATTGATATCATCTCA+AGG - chr7.2:11224236-11224255 MS.gene20055:intron 35.0%
! GAGGTAGAAATTGATGGTTA+CGG + chr7.2:11224879-11224898 None:intergenic 35.0%
! GTACATTTTATTGCACAGGA+AGG - chr7.2:11224082-11224101 MS.gene20055:intron 35.0%
!! AGTGGGTTTAGAGATTTTCT+TGG - chr7.2:11224662-11224681 MS.gene20055:CDS 35.0%
!! CTATGGTTGGTAATTCTAGT+GGG - chr7.2:11224645-11224664 MS.gene20055:CDS 35.0%
!! CTTTTTCCTTGGTTCTTTGT+TGG + chr7.2:11223113-11223132 None:intergenic 35.0%
!!! AAGTGGTTAGTGGGTTTTAA+TGG - chr7.2:11224798-11224817 MS.gene20055:CDS 35.0%
AAAGACCAAACTTGTCACTG+TGG - chr7.2:11224306-11224325 MS.gene20055:intron 40.0%
AAAGGTCCAACAAAGAACCA+AGG - chr7.2:11223104-11223123 MS.gene20055:intron 40.0%
CAACAATTTAGTCCACATGC+AGG - chr7.2:11224272-11224291 MS.gene20055:intron 40.0%
CTTCAGAAAGCAGCTCAAAT+TGG - chr7.2:11224449-11224468 MS.gene20055:intron 40.0%
GCTCTTGAGGTAGAAATTGA+TGG + chr7.2:11224885-11224904 None:intergenic 40.0%
GCTGAAGATTCTGATCTCTT+TGG + chr7.2:11223045-11223064 None:intergenic 40.0%
GTCTGCGAAATATGCAACAA+AGG - chr7.2:11223016-11223035 MS.gene20055:intron 40.0%
GTGGAAGAGGATAGTGAAAA+GGG + chr7.2:11222744-11222763 None:intergenic 40.0%
TACCATGGAAGCTAAAGCAA+AGG - chr7.2:11223086-11223105 MS.gene20055:intron 40.0%
TAGTAGTACTAGTGCAGCTA+TGG - chr7.2:11224628-11224647 MS.gene20055:CDS 40.0%
TGCATATTTCGCAGACGAAT+CGG + chr7.2:11223012-11223031 None:intergenic 40.0%
TGGAAGAGGATAGTGAAAAG+GGG + chr7.2:11222743-11222762 None:intergenic 40.0%
TTCAACCACAGTGACAAGTT+TGG + chr7.2:11224314-11224333 None:intergenic 40.0%
TTCTTGGAGTGAGTAACCAT+CGG - chr7.2:11224678-11224697 MS.gene20055:CDS 40.0%
! GAAAAAGGTATACATCTGCC+CGG - chr7.2:11223126-11223145 MS.gene20055:CDS 40.0%
! GAAATTGATGGTTACGGGTT+TGG + chr7.2:11224873-11224892 None:intergenic 40.0%
! TTTGCTTTAGCTTCCATGGT+AGG + chr7.2:11223087-11223106 None:intergenic 40.0%
! TTTTCACTATCCTCTTCCAC+CGG - chr7.2:11222744-11222763 MS.gene20055:CDS 40.0%
!! GCTATGGTTGGTAATTCTAG+TGG - chr7.2:11224644-11224663 MS.gene20055:CDS 40.0%
!! TTTGTGGTGGATTAGGGTTA+GGG + chr7.2:11222797-11222816 None:intergenic 40.0%
AAGTTTGTCAAAACCTCCGG+TGG + chr7.2:11222763-11222782 None:intergenic 45.0%
ACTGTGGTACACTCTTCTCT+AGG - chr7.2:11223332-11223351 MS.gene20055:CDS 45.0%
AGAAATCTACCAGGAACACC+AGG - chr7.2:11222831-11222850 MS.gene20055:intron 45.0%
AGAGCAATGACTTCAGCATC+CGG + chr7.2:11222962-11222981 None:intergenic 45.0%
AGTACTAGTGCAGCTATGGT+TGG - chr7.2:11224632-11224651 MS.gene20055:CDS 45.0%
GAGTGAGTAACCATCGGATT+TGG - chr7.2:11224684-11224703 MS.gene20055:CDS 45.0%
GCTGCACTAGTACTACTACT+TGG + chr7.2:11224626-11224645 None:intergenic 45.0%
GGTGGAAGAGGATAGTGAAA+AGG + chr7.2:11222745-11222764 None:intergenic 45.0%
TGCTCATGAAATCCTGCATG+TGG + chr7.2:11224287-11224306 None:intergenic 45.0%
TGGAGAGAATCCAAATCCGA+TGG + chr7.2:11224697-11224716 None:intergenic 45.0%
TTCGTCGCCATTAGAGTCTT+TGG + chr7.2:11222989-11223008 None:intergenic 45.0%
! AGAAGTGCAGTAGCTGACAT+TGG + chr7.2:11224431-11224450 None:intergenic 45.0%
! GACCTTTGCTTTAGCTTCCA+TGG + chr7.2:11223091-11223110 None:intergenic 45.0%
! GCAAACTTTGCTAGCTCTTG+AGG + chr7.2:11224898-11224917 None:intergenic 45.0%
!! CTCTTCTTCTTGCTGGTTTG+TGG + chr7.2:11222813-11222832 None:intergenic 45.0%
!! GTTTGTGGTGGATTAGGGTT+AGG + chr7.2:11222798-11222817 None:intergenic 45.0%
!! TGCTGGTTTGTGGTGGATTA+GGG + chr7.2:11222803-11222822 None:intergenic 45.0%
!! TTCTTCTTGCTGGTTTGTGG+TGG + chr7.2:11222810-11222829 None:intergenic 45.0%
!! TTGCTGGTTTGTGGTGGATT+AGG + chr7.2:11222804-11222823 None:intergenic 45.0%
GAAGAGGTCACAACCTACCA+TGG - chr7.2:11223071-11223090 MS.gene20055:intron 50.0%
GACCTGTGTCCACCATGATG+CGG - chr7.2:11223153-11223172 MS.gene20055:CDS 55.0%
GTCAAAACCTCCGGTGGAAG+AGG + chr7.2:11222757-11222776 None:intergenic 55.0%
TATTCCGGTGAGGTCACCCA+AGG + chr7.2:11223185-11223204 None:intergenic 55.0%
TCACTATCCTCTTCCACCGG+AGG - chr7.2:11222747-11222766 MS.gene20055:CDS 55.0%
! TGGTGGACACAGGTCTTCTC+CGG + chr7.2:11223148-11223167 None:intergenic 55.0%
GGTGGACACAGGTCTTCTCC+GGG + chr7.2:11223147-11223166 None:intergenic 60.0%
TGTCCACCATGATGCGGCCA+GGG - chr7.2:11223159-11223178 MS.gene20055:CDS 60.0%
AGGGCCTTGGGTGACCTCAC+CGG - chr7.2:11223178-11223197 MS.gene20055:CDS 65.0%
CATGATGCGGCCAGGGCCTT+GGG - chr7.2:11223166-11223185 MS.gene20055:CDS 65.0%
GTGTCCACCATGATGCGGCC+AGG - chr7.2:11223158-11223177 MS.gene20055:CDS 65.0%
!! GGCCGCATCATGGTGGACAC+AGG + chr7.2:11223158-11223177 None:intergenic 65.0%
AGGCCCTGGCCGCATCATGG+TGG + chr7.2:11223165-11223184 None:intergenic 70.0%
CCAAGGCCCTGGCCGCATCA+TGG + chr7.2:11223168-11223187 None:intergenic 70.0%
CCATGATGCGGCCAGGGCCT+TGG - chr7.2:11223165-11223184 MS.gene20055:CDS 70.0%
GGTGAGGTCACCCAAGGCCC+TGG + chr7.2:11223179-11223198 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 11222723 11225082 11222723 ID=MS.gene20055
chr7.2 mRNA 11222723 11225082 11222723 ID=MS.gene20055.t1;Parent=MS.gene20055
chr7.2 exon 11224953 11225082 11224953 ID=MS.gene20055.t1.exon1;Parent=MS.gene20055.t1
chr7.2 CDS 11224953 11225082 11224953 ID=cds.MS.gene20055.t1;Parent=MS.gene20055.t1
chr7.2 exon 11224452 11224848 11224452 ID=MS.gene20055.t1.exon2;Parent=MS.gene20055.t1
chr7.2 CDS 11224452 11224848 11224452 ID=cds.MS.gene20055.t1;Parent=MS.gene20055.t1
chr7.2 exon 11223120 11223705 11223120 ID=MS.gene20055.t1.exon3;Parent=MS.gene20055.t1
chr7.2 CDS 11223120 11223705 11223120 ID=cds.MS.gene20055.t1;Parent=MS.gene20055.t1
chr7.2 exon 11222723 11222767 11222723 ID=MS.gene20055.t1.exon4;Parent=MS.gene20055.t1
chr7.2 CDS 11222723 11222767 11222723 ID=cds.MS.gene20055.t1;Parent=MS.gene20055.t1
Gene Sequence

>MS.gene20055

ATGAATATTCTTGGTGACCCCTTTTCACTATCCTCTTCCACCGGAGGTTTTGACAAACTTCAAAACACAAACCCTAACCCTAATCCACCACAAACCAGCAAGAAGAAGAGAAATCTACCAGGAACACCAGGTAATATTAATTAAACTTTTTTCCTTTTAATATTTAATAAATAAAGTATTTTTGCTATATATATTTTTTCAAATATGTTTTGAATTTGGATTGAAATACTACAGATCCGGATGCTGAAGTCATTGCTCTTTCTCCAAAGACTCTAATGGCGACGAACCGATTCGTCTGCGAAATATGCAACAAAGGATTCCAAAGAGATCAGAATCTTCAGCTTCATAGAAGAGGTCACAACCTACCATGGAAGCTAAAGCAAAGGTCCAACAAAGAACCAAGGAAAAAGGTATACATCTGCCCGGAGAAGACCTGTGTCCACCATGATGCGGCCAGGGCCTTGGGTGACCTCACCGGAATAAAGAAACATTTTAGCAGAAAACATGGTGAGAAGAAATGGAAGTGTGATAAGTGTTCCAAGAAATATGCAGTTCAATCTGATTGGAAAGCTCACACTAAAACTTGTGGTACTAGAGAATATAAGTGTGACTGTGGTACACTCTTCTCTAGGTAATTTAATTCATTAATTTTTTTTCATTTTTAATTTTCAATATCAAAAGATTTTGGTGACTTAGTTTCAAAGACAAAAGTCAGGACAAATTTATTAACAAATTTTTACATCGGCAGTCAAATTTAAACTTACGTTCTTGCAAGATATGAGTGTATTATTACCAGTTAAACCAATTTTAACCATGCAATTCATTCATACTGATTTTTTATGAACAAAAAGTTTCTGTAAATCTTTTGTTTTCGATGTGGATGAAAAAACTGTTTTTTTTTTTTTTTTACAAGTAAAAATAAAAAGCTATTTTTCTTTTCATTTAGTTATACTTCTATCATGCATTTGCATTATGTTTGAATTTAATGCATACTTCCTCTGAATTTAATTATTCACAAATTAAGAAAAGTTGTTAAGGTATAATCTCAAACTATAATGTTTTGTTGACTTAATAAAAAAATGTTACTATTGCATTTCCTAGACTACCATATCTTTTTATTTGAACTTGTATAAAAACTTGTTTCGTTAAAGGATATTTTGATAATAATAATAATAATAATAATAATAATAGCATTAAATTATAATGGTGAAAGTAGTTCGATTTTACTTATATTGTCCATCAAATTGTAGTACTATTTTTTTTGCCTATATATGGTTATGGTTATGGAGTATTTAAATTCAGAGTAGTGCTTGTTTATTCTAGTACTACTGCATAGTGTAAATGATTAGGTTTCTAATGGTACATTTTATTGCACAGGAAGGATAGCTTTATTACACATAGAGCTTTCTGTGACGCATTAGCTGTAGAAAGTGCAAGACACTCATCTCCTACAACTCTAAATTTCCAGAATGAAGAGTCGTCAAATATGATGAACACACAAACTAGTTTGTCACATGGATTGATATCATCTCAAGGACTTCAAAGTCTTCAACAATTTAGTCCACATGCAGGATTTCATGAGCAAAGACCAAACTTGTCACTGTGGTTGAACCAAGAAAATCAACAGATTAATCATCATCCACATTCACTTGATCATGTTTCATCAGGTTTTTCTGATGTTGTGCAAATGGCTCAAACTAACACTCCAATGTCAGCTACTGCACTTCTTCAGAAAGCAGCTCAAATTGGTTCAACAAGAAGCACTACTAATCCTTCCATTTTTAGTGGAAGTTTTGGTGTAATGAGTTCATCCTCTACACAAACAACGAGTTTAAACCAAAACCATGATGAGGTTAATATGGTCATTAATCAGAAAATGAAGCAGCATGAGAATTTTGATCCAAGTAGTAGTACTAGTGCAGCTATGGTTGGTAATTCTAGTGGGTTTAGAGATTTTCTTGGAGTGAGTAACCATCGGATTTGGATTCTCTCCATTGAAAATTTTCTCAAGTTTTCTCCATTGAAATCTCAACCATCAAATATGAGAGAGAAAGTGAGTGTTAAATTATAAAGAAAAGTGGTTAGTGGGTTTTAATGGTAGAGATTTTCAATGGAGAAAACTTGAGAAAATTTTCAATGGAGAGGATCCAAACCCGTAACCATCAATTTCTACCTCAAGAGCTAGCAAAGTTTGCTTCCATAAGTTCATCGATGATGAGTTTAAATCAATTCAATGCTGGGTGCATCAATGAAAATTAATTAGTCCTTAATTAAGTGTTGACTATATTGATATTTTTGGAACTGCATGTGAATAGATAATGTTTGTGATAGTAGTGGGACCCACTGCATGTTTGAGATGA
Protein sequence

>MS.gene20055.t1

MNILGDPFSLSSSTGGFDKLQNTNPNPNPPQTSKKKRNLPGTPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRSNKEPRKKVYICPEKTCVHHDAARALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHTKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAVESARHSSPTTLNFQNEESSNMMNTQTSLSHGLISSQGLQSLQQFSPHAGFHEQRPNLSLWLNQENQQINHHPHSLDHVSSGFSDVVQMAQTNTPMSATALLQKAAQIGSTRSTTNPSIFSGSFGVMSSSSTQTTSLNQNHDEVNMVINQKMKQHENFDPSSSTSAAMVGNSSGFRDFLGIMFVIVVGPTACLR