AlfalfaGEDB | MS.gene20055

M. sativa cultivar XinJiangDaYe / MS.gene20055

KEGG: -
GO: GO:0003674 GO:0003676 GO:0005488 GO:0097159 GO:1901363
PFAM: PF00096.29

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene20055.t1	XP_024625671.1	92	373	28	2	1	372	1	372	2.10E-191	678.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene20055.t1	Q700D2	53.4	401	127	13	3	363	4	384	8.7e-82	305.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene20055.t1	A0A396H6Q6	92.0	373	28	2	1	372	1	372	1.5e-191	678.3

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene20055.t1	TF	C2H2

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene20055.t1	MTR_2g099990	63.251	283	84	4	33	302	45	320	2.55e-118	352
MS.gene20055.t1	MTR_4g059870	54.227	343	111	8	7	304	6	347	3.49e-114	342
MS.gene20055.t1	MTR_8g017210	57.402	331	102	8	27	329	55	374	4.72e-114	342
MS.gene20055.t1	MTR_1g094115	87.500	168	20	1	34	200	47	214	5.43e-112	338
MS.gene20055.t1	MTR_1g016010	62.191	283	84	9	30	308	38	301	1.30e-108	326
MS.gene20055.t1	MTR_1g112270	86.875	160	21	0	37	196	47	206	8.72e-108	328
MS.gene20055.t1	MTR_2g093960	62.403	258	74	8	34	283	32	274	7.89e-105	315
MS.gene20055.t1	MTR_1g112270	81.287	171	21	1	37	196	47	217	4.05e-104	319
MS.gene20055.t1	MTR_2g090745	50.729	343	105	7	42	324	15	353	1.62e-102	310
MS.gene20055.t1	MTR_2g099990	61.240	258	80	4	58	302	1	251	2.48e-101	306

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene20055.t1	AT5G03150	61.489	309	71	9	3	283	4	292	1.99e-117	350
MS.gene20055.t1	AT3G50700	85.549	173	25	0	24	196	24	196	2.70e-113	338
MS.gene20055.t1	AT5G66730	75.728	206	43	2	11	209	8	213	2.31e-111	335
MS.gene20055.t1	AT1G55110	62.799	293	84	8	30	306	58	341	2.58e-111	333
MS.gene20055.t1	AT1G55110	62.799	293	84	8	30	306	58	341	2.58e-111	333
MS.gene20055.t1	AT1G55110	62.799	293	84	8	30	306	58	341	2.58e-111	333
MS.gene20055.t1	AT5G44160	52.676	355	109	8	28	329	32	380	1.13e-110	332
MS.gene20055.t1	AT3G45260	84.181	177	23	2	33	204	38	214	2.01e-108	325
MS.gene20055.t1	AT3G45260	84.181	177	23	2	33	204	38	214	2.01e-108	325
MS.gene20055.t1	AT1G03840	78.610	187	38	2	28	213	36	221	2.57e-108	327

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Find 78 sgRNAs with CRISPR-Local

Find 136 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCATGATGAGGTTAATA+TGG	0.368833	7.2:-11223221	MS.gene20055:CDS
AAAGACCAAACTTGTCACTG+TGG	0.746204	7.2:-11223477	MS.gene20055:CDS
AAAGCTCACACTAAAACTTG+TGG	0.646859	7.2:-11224494	MS.gene20055:CDS
AAAGGTCCAACAAAGAACCA+AGG	0.658252	7.2:-11224679	MS.gene20055:CDS
AAGAAGAAGAGAAATCTACC+AGG	0.661464	7.2:-11224961	MS.gene20055:CDS
AAGTTTGTCAAAACCTCCGG+TGG	0.633133	7.2:+11225023	None:intergenic
AATATGCAGTTCAATCTGAT+TGG	0.433651	7.2:-11224517	MS.gene20055:CDS
AATCTTCAGCTTCATAGAAG+AGG	0.576550	7.2:-11224728	MS.gene20055:CDS
AATGTTTCTTTATTCCGGTG+AGG	0.626985	7.2:+11224591	None:intergenic
ACACAAACTAGTTTGTCACA+TGG	0.646370	7.2:-11223565	MS.gene20055:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACCATGATGAGGTTAATA+TGG	-	chr7.2:11224562-11224581	MS.gene20055:CDS	30.0%
AAACTTCCACTAAAAATGGA+AGG	+	chr7.2:11224497-11224516	None:intergenic	30.0%
AATATGCAGTTCAATCTGAT+TGG	-	chr7.2:11223266-11223285	MS.gene20055:CDS	30.0%
ACCAAAACTTCCACTAAAAA+TGG	+	chr7.2:11224501-11224520	None:intergenic	30.0%
ACTGCATAGTGTAAATGATT+AGG	-	chr7.2:11224050-11224069	MS.gene20055:intron	30.0%
ACTTTCTCTCTCATATTTGA+TGG	+	chr7.2:11224758-11224777	None:intergenic	30.0%
AGATTGAACTGCATATTTCT+TGG	+	chr7.2:11223263-11223282	None:intergenic	30.0%
ATCAGTATGAATGAATTGCA+TGG	+	chr7.2:11223537-11223556	None:intergenic	30.0%
CCATAACCATAACCATATAT+AGG	+	chr7.2:11223990-11224009	None:intergenic	30.0%
CCTATATATGGTTATGGTTA+TGG	-	chr7.2:11223987-11224006	MS.gene20055:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.2	gene	11222723	11225082	11222723	ID=MS.gene20055
chr7.2	mRNA	11222723	11225082	11222723	ID=MS.gene20055.t1;Parent=MS.gene20055
chr7.2	exon	11224953	11225082	11224953	ID=MS.gene20055.t1.exon1;Parent=MS.gene20055.t1
chr7.2	CDS	11224953	11225082	11224953	ID=cds.MS.gene20055.t1;Parent=MS.gene20055.t1
chr7.2	exon	11224452	11224848	11224452	ID=MS.gene20055.t1.exon2;Parent=MS.gene20055.t1
chr7.2	CDS	11224452	11224848	11224452	ID=cds.MS.gene20055.t1;Parent=MS.gene20055.t1
chr7.2	exon	11223120	11223705	11223120	ID=MS.gene20055.t1.exon3;Parent=MS.gene20055.t1
chr7.2	CDS	11223120	11223705	11223120	ID=cds.MS.gene20055.t1;Parent=MS.gene20055.t1
chr7.2	exon	11222723	11222767	11222723	ID=MS.gene20055.t1.exon4;Parent=MS.gene20055.t1
chr7.2	CDS	11222723	11222767	11222723	ID=cds.MS.gene20055.t1;Parent=MS.gene20055.t1

Gene Sequence

>MS.gene20055

ATGAATATTCTTGGTGACCCCTTTTCACTATCCTCTTCCACCGGAGGTTTTGACAAACTTCAAAACACAAACCCTAACCCTAATCCACCACAAACCAGCAAGAAGAAGAGAAATCTACCAGGAACACCAGGTAATATTAATTAAACTTTTTTCCTTTTAATATTTAATAAATAAAGTATTTTTGCTATATATATTTTTTCAAATATGTTTTGAATTTGGATTGAAATACTACAGATCCGGATGCTGAAGTCATTGCTCTTTCTCCAAAGACTCTAATGGCGACGAACCGATTCGTCTGCGAAATATGCAACAAAGGATTCCAAAGAGATCAGAATCTTCAGCTTCATAGAAGAGGTCACAACCTACCATGGAAGCTAAAGCAAAGGTCCAACAAAGAACCAAGGAAAAAGGTATACATCTGCCCGGAGAAGACCTGTGTCCACCATGATGCGGCCAGGGCCTTGGGTGACCTCACCGGAATAAAGAAACATTTTAGCAGAAAACATGGTGAGAAGAAATGGAAGTGTGATAAGTGTTCCAAGAAATATGCAGTTCAATCTGATTGGAAAGCTCACACTAAAACTTGTGGTACTAGAGAATATAAGTGTGACTGTGGTACACTCTTCTCTAGGTAATTTAATTCATTAATTTTTTTTCATTTTTAATTTTCAATATCAAAAGATTTTGGTGACTTAGTTTCAAAGACAAAAGTCAGGACAAATTTATTAACAAATTTTTACATCGGCAGTCAAATTTAAACTTACGTTCTTGCAAGATATGAGTGTATTATTACCAGTTAAACCAATTTTAACCATGCAATTCATTCATACTGATTTTTTATGAACAAAAAGTTTCTGTAAATCTTTTGTTTTCGATGTGGATGAAAAAACTGTTTTTTTTTTTTTTTTACAAGTAAAAATAAAAAGCTATTTTTCTTTTCATTTAGTTATACTTCTATCATGCATTTGCATTATGTTTGAATTTAATGCATACTTCCTCTGAATTTAATTATTCACAAATTAAGAAAAGTTGTTAAGGTATAATCTCAAACTATAATGTTTTGTTGACTTAATAAAAAAATGTTACTATTGCATTTCCTAGACTACCATATCTTTTTATTTGAACTTGTATAAAAACTTGTTTCGTTAAAGGATATTTTGATAATAATAATAATAATAATAATAATAATAGCATTAAATTATAATGGTGAAAGTAGTTCGATTTTACTTATATTGTCCATCAAATTGTAGTACTATTTTTTTTGCCTATATATGGTTATGGTTATGGAGTATTTAAATTCAGAGTAGTGCTTGTTTATTCTAGTACTACTGCATAGTGTAAATGATTAGGTTTCTAATGGTACATTTTATTGCACAGGAAGGATAGCTTTATTACACATAGAGCTTTCTGTGACGCATTAGCTGTAGAAAGTGCAAGACACTCATCTCCTACAACTCTAAATTTCCAGAATGAAGAGTCGTCAAATATGATGAACACACAAACTAGTTTGTCACATGGATTGATATCATCTCAAGGACTTCAAAGTCTTCAACAATTTAGTCCACATGCAGGATTTCATGAGCAAAGACCAAACTTGTCACTGTGGTTGAACCAAGAAAATCAACAGATTAATCATCATCCACATTCACTTGATCATGTTTCATCAGGTTTTTCTGATGTTGTGCAAATGGCTCAAACTAACACTCCAATGTCAGCTACTGCACTTCTTCAGAAAGCAGCTCAAATTGGTTCAACAAGAAGCACTACTAATCCTTCCATTTTTAGTGGAAGTTTTGGTGTAATGAGTTCATCCTCTACACAAACAACGAGTTTAAACCAAAACCATGATGAGGTTAATATGGTCATTAATCAGAAAATGAAGCAGCATGAGAATTTTGATCCAAGTAGTAGTACTAGTGCAGCTATGGTTGGTAATTCTAGTGGGTTTAGAGATTTTCTTGGAGTGAGTAACCATCGGATTTGGATTCTCTCCATTGAAAATTTTCTCAAGTTTTCTCCATTGAAATCTCAACCATCAAATATGAGAGAGAAAGTGAGTGTTAAATTATAAAGAAAAGTGGTTAGTGGGTTTTAATGGTAGAGATTTTCAATGGAGAAAACTTGAGAAAATTTTCAATGGAGAGGATCCAAACCCGTAACCATCAATTTCTACCTCAAGAGCTAGCAAAGTTTGCTTCCATAAGTTCATCGATGATGAGTTTAAATCAATTCAATGCTGGGTGCATCAATGAAAATTAATTAGTCCTTAATTAAGTGTTGACTATATTGATATTTTTGGAACTGCATGTGAATAGATAATGTTTGTGATAGTAGTGGGACCCACTGCATGTTTGAGATGA

Protein sequence

>MS.gene20055.t1

MNILGDPFSLSSSTGGFDKLQNTNPNPNPPQTSKKKRNLPGTPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRSNKEPRKKVYICPEKTCVHHDAARALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHTKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAVESARHSSPTTLNFQNEESSNMMNTQTSLSHGLISSQGLQSLQQFSPHAGFHEQRPNLSLWLNQENQQINHHPHSLDHVSSGFSDVVQMAQTNTPMSATALLQKAAQIGSTRSTTNPSIFSGSFGVMSSSSTQTTSLNQNHDEVNMVINQKMKQHENFDPSSSTSAAMVGNSSGFRDFLGIMFVIVVGPTACLR