Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20139.t1 | XP_013447302.1 | 98.2 | 332 | 5 | 1 | 1 | 332 | 1 | 331 | 7.40E-170 | 607.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20139.t1 | Q9M0F8 | 84.9 | 225 | 29 | 4 | 3 | 224 | 4 | 226 | 9.0e-108 | 392.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20139.t1 | A0A072TUY2 | 98.2 | 332 | 5 | 1 | 1 | 332 | 1 | 331 | 5.3e-170 | 607.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene20139.t1 | TF | NAC |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20139.t1 | MTR_8g102240 | 97.746 | 488 | 8 | 2 | 1 | 488 | 1 | 485 | 0.0 | 984 |
| MS.gene20139.t1 | MTR_8g102240 | 97.541 | 488 | 8 | 2 | 1 | 488 | 1 | 484 | 0.0 | 981 |
| MS.gene20139.t1 | MTR_4g088245 | 69.484 | 213 | 52 | 5 | 30 | 238 | 47 | 250 | 2.20e-97 | 296 |
| MS.gene20139.t1 | MTR_4g078875 | 73.846 | 195 | 40 | 4 | 30 | 219 | 26 | 214 | 7.18e-95 | 289 |
| MS.gene20139.t1 | MTR_2g014680 | 63.182 | 220 | 67 | 5 | 3 | 218 | 8 | 217 | 9.99e-90 | 276 |
| MS.gene20139.t1 | MTR_2g090735 | 73.737 | 198 | 40 | 4 | 30 | 222 | 27 | 217 | 6.73e-89 | 273 |
| MS.gene20139.t1 | MTR_8g069160 | 71.739 | 184 | 41 | 4 | 30 | 209 | 47 | 223 | 4.42e-87 | 268 |
| MS.gene20139.t1 | MTR_1g093680 | 53.394 | 221 | 92 | 5 | 27 | 245 | 36 | 247 | 7.08e-75 | 244 |
| MS.gene20139.t1 | MTR_5g053430 | 59.162 | 191 | 68 | 3 | 27 | 215 | 36 | 218 | 3.52e-73 | 238 |
| MS.gene20139.t1 | MTR_5g053430 | 55.189 | 212 | 83 | 4 | 27 | 236 | 36 | 237 | 4.81e-73 | 238 |
| MS.gene20139.t1 | MTR_7g033320 | 53.646 | 192 | 80 | 4 | 25 | 213 | 30 | 215 | 4.68e-62 | 211 |
| MS.gene20139.t1 | MTR_1g093670 | 47.059 | 204 | 85 | 5 | 43 | 246 | 19 | 199 | 1.18e-51 | 179 |
| MS.gene20139.t1 | MTR_6g084430 | 29.680 | 219 | 117 | 9 | 47 | 256 | 5 | 195 | 1.83e-13 | 71.6 |
| MS.gene20139.t1 | MTR_8g059170 | 32.895 | 152 | 76 | 5 | 45 | 194 | 12 | 139 | 3.06e-13 | 71.2 |
| MS.gene20139.t1 | MTR_1g008740 | 30.994 | 171 | 90 | 6 | 47 | 211 | 13 | 161 | 3.67e-13 | 71.2 |
| MS.gene20139.t1 | MTR_1g008740 | 30.994 | 171 | 90 | 6 | 47 | 211 | 27 | 175 | 4.12e-13 | 71.2 |
| MS.gene20139.t1 | MTR_2g079990 | 30.994 | 171 | 91 | 6 | 45 | 212 | 14 | 160 | 1.14e-12 | 69.7 |
| MS.gene20139.t1 | MTR_3g070030 | 30.682 | 176 | 89 | 8 | 45 | 211 | 17 | 168 | 1.30e-12 | 69.3 |
| MS.gene20139.t1 | MTR_3g088110 | 34.416 | 154 | 72 | 8 | 45 | 195 | 5 | 132 | 1.64e-12 | 68.6 |
| MS.gene20139.t1 | MTR_7g085260 | 30.851 | 188 | 94 | 8 | 38 | 213 | 8 | 171 | 2.29e-12 | 68.9 |
| MS.gene20139.t1 | MTR_2g079990 | 32.895 | 152 | 76 | 5 | 45 | 194 | 14 | 141 | 2.39e-12 | 68.6 |
| MS.gene20139.t1 | MTR_2g080010 | 32.258 | 155 | 79 | 7 | 47 | 198 | 15 | 146 | 4.62e-12 | 67.8 |
| MS.gene20139.t1 | MTR_4g089135 | 34.437 | 151 | 73 | 8 | 47 | 194 | 15 | 142 | 5.58e-12 | 67.4 |
| MS.gene20139.t1 | MTR_3g109340 | 31.746 | 189 | 94 | 9 | 47 | 225 | 22 | 185 | 1.02e-11 | 66.6 |
| MS.gene20139.t1 | MTR_4g078895 | 68.182 | 44 | 13 | 1 | 46 | 89 | 36 | 78 | 1.07e-11 | 60.8 |
| MS.gene20139.t1 | MTR_4g108760 | 30.286 | 175 | 90 | 7 | 45 | 211 | 15 | 165 | 1.57e-11 | 66.2 |
| MS.gene20139.t1 | MTR_7g100990 | 31.788 | 151 | 77 | 6 | 47 | 194 | 11 | 138 | 1.85e-11 | 65.9 |
| MS.gene20139.t1 | MTR_3g435150 | 31.638 | 177 | 89 | 7 | 43 | 211 | 12 | 164 | 3.09e-11 | 64.7 |
| MS.gene20139.t1 | MTR_2157s0010 | 31.818 | 154 | 78 | 6 | 47 | 196 | 8 | 138 | 3.77e-11 | 63.9 |
| MS.gene20139.t1 | MTR_7g005280 | 28.571 | 203 | 109 | 11 | 47 | 243 | 15 | 187 | 4.66e-11 | 63.5 |
| MS.gene20139.t1 | MTR_2g062730 | 32.000 | 175 | 87 | 9 | 45 | 211 | 8 | 158 | 6.52e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20139.t1 | AT4G29230 | 60.433 | 508 | 162 | 17 | 3 | 486 | 4 | 496 | 2.09e-180 | 515 |
| MS.gene20139.t1 | AT4G29230 | 60.314 | 509 | 162 | 18 | 3 | 486 | 4 | 497 | 1.45e-178 | 510 |
| MS.gene20139.t1 | AT4G29230 | 60.970 | 433 | 140 | 13 | 3 | 421 | 4 | 421 | 3.81e-153 | 443 |
| MS.gene20139.t1 | AT5G56620 | 49.068 | 483 | 145 | 15 | 10 | 475 | 4 | 402 | 1.91e-135 | 397 |
| MS.gene20139.t1 | AT5G56620 | 49.068 | 483 | 145 | 15 | 10 | 475 | 4 | 402 | 2.37e-135 | 397 |
| MS.gene20139.t1 | AT5G56620 | 51.707 | 410 | 117 | 11 | 10 | 400 | 4 | 351 | 3.36e-122 | 362 |
| MS.gene20139.t1 | AT4G28500 | 66.514 | 218 | 63 | 3 | 9 | 222 | 17 | 228 | 4.53e-97 | 295 |
| MS.gene20139.t1 | AT1G28470 | 67.513 | 197 | 50 | 3 | 30 | 219 | 53 | 242 | 2.76e-89 | 276 |
| MS.gene20139.t1 | AT1G25580 | 58.247 | 194 | 65 | 5 | 27 | 218 | 36 | 215 | 1.10e-68 | 226 |
| MS.gene20139.t1 | AT5G14490 | 53.299 | 197 | 81 | 7 | 25 | 218 | 30 | 218 | 2.73e-58 | 196 |
| MS.gene20139.t1 | AT5G14490 | 53.299 | 197 | 81 | 7 | 25 | 218 | 30 | 218 | 3.05e-58 | 194 |
| MS.gene20139.t1 | AT5G14490 | 53.299 | 197 | 81 | 7 | 25 | 218 | 33 | 221 | 3.62e-58 | 196 |
| MS.gene20139.t1 | AT5G14490 | 53.299 | 197 | 81 | 7 | 25 | 218 | 33 | 221 | 4.61e-58 | 196 |
| MS.gene20139.t1 | AT3G01600 | 50.510 | 196 | 87 | 5 | 23 | 215 | 28 | 216 | 4.47e-55 | 188 |
| MS.gene20139.t1 | AT1G01720 | 35.065 | 154 | 71 | 8 | 45 | 195 | 5 | 132 | 5.34e-14 | 72.8 |
| MS.gene20139.t1 | AT5G09330 | 35.526 | 152 | 70 | 8 | 47 | 194 | 6 | 133 | 1.14e-12 | 70.5 |
| MS.gene20139.t1 | AT5G09330 | 35.526 | 152 | 70 | 8 | 47 | 194 | 6 | 133 | 1.14e-12 | 70.5 |
| MS.gene20139.t1 | AT5G09330 | 35.526 | 152 | 70 | 8 | 47 | 194 | 6 | 133 | 1.14e-12 | 70.5 |
| MS.gene20139.t1 | AT5G09330 | 35.526 | 152 | 70 | 8 | 47 | 194 | 6 | 133 | 1.14e-12 | 70.5 |
| MS.gene20139.t1 | AT5G09330 | 35.526 | 152 | 70 | 8 | 47 | 194 | 6 | 133 | 1.14e-12 | 70.5 |
| MS.gene20139.t1 | AT1G02220 | 30.872 | 149 | 76 | 5 | 48 | 193 | 4 | 128 | 3.72e-12 | 68.6 |
| MS.gene20139.t1 | AT3G15500 | 31.579 | 152 | 78 | 5 | 45 | 194 | 12 | 139 | 3.74e-12 | 67.8 |
| MS.gene20139.t1 | AT1G33060 | 28.814 | 177 | 92 | 7 | 46 | 213 | 23 | 174 | 5.14e-12 | 68.6 |
| MS.gene20139.t1 | AT1G33060 | 28.814 | 177 | 92 | 7 | 46 | 213 | 23 | 174 | 5.54e-12 | 68.6 |
| MS.gene20139.t1 | AT1G52890 | 30.921 | 152 | 79 | 5 | 45 | 194 | 12 | 139 | 1.21e-11 | 66.2 |
| MS.gene20139.t1 | AT3G29035 | 30.682 | 176 | 88 | 7 | 45 | 211 | 22 | 172 | 2.25e-11 | 65.5 |
| MS.gene20139.t1 | AT4G27410 | 27.919 | 197 | 95 | 7 | 45 | 218 | 12 | 184 | 2.44e-11 | 65.1 |
| MS.gene20139.t1 | AT5G39610 | 30.222 | 225 | 117 | 10 | 45 | 260 | 18 | 211 | 2.96e-11 | 64.7 |
Find 102 sgRNAs with CRISPR-Local
Find 227 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCTGAAATGATCAGATTTA+AGG | 0.198556 | 4.4:+3611009 | None:intergenic |
| CTTCCATTGATATTATAATT+AGG | 0.223614 | 4.4:+3611161 | None:intergenic |
| GCATTTGTGAAGCTTGTTAA+AGG | 0.254170 | 4.4:+3611047 | None:intergenic |
| AGCTTCTTGTTGGTTTCTAA+TGG | 0.256606 | 4.4:+3608017 | None:intergenic |
| ACCAGACCTGTTATGGTTAA+TGG | 0.262903 | 4.4:-3611431 | MS.gene20139:CDS |
| CCTGTTGTATATGCCTTTGA+TGG | 0.263920 | 4.4:+3611542 | None:intergenic |
| GGTTGAAATACTCTTCTTAC+TGG | 0.281746 | 4.4:-3607990 | MS.gene20139:CDS |
| TGTTTACCATTAACCATAAC+AGG | 0.301271 | 4.4:+3611425 | None:intergenic |
| GATTGGAAGGCCTACTTATA+TGG | 0.307907 | 4.4:+3610034 | None:intergenic |
| TGGTTTGGAGGAAGTCATTA+TGG | 0.313328 | 4.4:-3608768 | MS.gene20139:CDS |
| CATCACCCAATTTGTCTTCT+CGG | 0.314134 | 4.4:+3611346 | None:intergenic |
| CACAGCCAAGACAGTGTAAT+TGG | 0.340413 | 4.4:-3611250 | MS.gene20139:CDS |
| ATGGTTAATGGTAAACAAAA+AGG | 0.341742 | 4.4:-3611419 | MS.gene20139:CDS |
| TATATGCCTTTGATGGTCTA+TGG | 0.358040 | 4.4:+3611549 | None:intergenic |
| GAAAACCCGAGAAGACAAAT+TGG | 0.361472 | 4.4:-3611352 | MS.gene20139:CDS |
| TCAACCACTCAGCTTCTTGT+TGG | 0.371776 | 4.4:+3608007 | None:intergenic |
| TGGAAGGTCTGCGTCTGGTT+TGG | 0.383750 | 4.4:-3608783 | MS.gene20139:CDS |
| CATGTTCTTTGACTCAACTT+TGG | 0.392039 | 4.4:+3611967 | None:intergenic |
| GGTTTGGAGGAAGTCATTAT+GGG | 0.397618 | 4.4:-3608767 | MS.gene20139:CDS |
| TCCACAGCGAGGGCAGTGTT+TGG | 0.404918 | 4.4:+3612326 | None:intergenic |
| TCAATCAATTCTTGATCTGT+TGG | 0.405063 | 4.4:+3612001 | None:intergenic |
| TGGTAAGACCAGACCTGTTA+TGG | 0.407089 | 4.4:-3611438 | MS.gene20139:CDS |
| GGGAGGTGGAGAGATGATAG+TGG | 0.407529 | 4.4:+3610005 | None:intergenic |
| GTGAAGCTTGTTAAAGGACT+AGG | 0.412943 | 4.4:+3611053 | None:intergenic |
| ATCACCCAATTTGTCTTCTC+GGG | 0.413577 | 4.4:+3611347 | None:intergenic |
| CTTCTTCATGTTGTCCAAGA+TGG | 0.416813 | 4.4:+3611315 | None:intergenic |
| TGGAGAGATGATAGTGGAGA+TGG | 0.419657 | 4.4:+3610011 | None:intergenic |
| GATGTGTGATGGAGGGGAGG+TGG | 0.419705 | 4.4:+3609991 | None:intergenic |
| GGAAGAAGAGATAGTGGAAG+TGG | 0.419947 | 4.4:-3611143 | MS.gene20139:CDS |
| AATCTGAGTAACAATTTCCT+TGG | 0.423878 | 4.4:+3611109 | None:intergenic |
| GAATTCATTCTCACTATTGA+AGG | 0.424881 | 4.4:-3611920 | MS.gene20139:CDS |
| ATCAATGGAAGAAGAGATAG+TGG | 0.430228 | 4.4:-3611149 | MS.gene20139:CDS |
| TCCTTGTAAGTCACACTCTT+CGG | 0.430646 | 4.4:+3611493 | None:intergenic |
| GAAACAAGATGGCACAAAAC+TGG | 0.433929 | 4.4:-3611458 | MS.gene20139:CDS |
| AACAAGCTTCACAAATGCCT+TGG | 0.435738 | 4.4:-3611042 | MS.gene20139:CDS |
| GATGATAGTGGAGATGGGAT+TGG | 0.442110 | 4.4:+3610017 | None:intergenic |
| ATCAGGAGGCTCATGTGATC+AGG | 0.445075 | 4.4:-3610187 | MS.gene20139:CDS |
| CCATCAAAGGCATATACAAC+AGG | 0.455100 | 4.4:-3611542 | MS.gene20139:CDS |
| ACCATTAACCATAACAGGTC+TGG | 0.456313 | 4.4:+3611430 | None:intergenic |
| CTATCATTATAGGTTGGAAT+AGG | 0.457175 | 4.4:-3610240 | MS.gene20139:intron |
| GAACCTAATTATAATATCAA+TGG | 0.462340 | 4.4:-3611164 | MS.gene20139:CDS |
| GGATCAAATTTCACTCCTGC+TGG | 0.469166 | 4.4:+3612022 | None:intergenic |
| TCAGACCAATTACACTGTCT+TGG | 0.476749 | 4.4:+3611245 | None:intergenic |
| GATGAAATGTCTGCTGTTGT+TGG | 0.479390 | 4.4:-3611080 | MS.gene20139:CDS |
| CTCACTATTGAAGGAGAAGA+TGG | 0.486078 | 4.4:-3611911 | MS.gene20139:CDS |
| AAGGTCTGCGTCTGGTTTGG+AGG | 0.488566 | 4.4:-3608780 | MS.gene20139:CDS |
| CTGCGTTTGCACTAATCTGC+TGG | 0.490246 | 4.4:+3610061 | None:intergenic |
| ACAAGAGAAATGCAAGCATC+AGG | 0.490268 | 4.4:-3610204 | MS.gene20139:CDS |
| GTGGATGTGTGATGGAGGGG+AGG | 0.491180 | 4.4:+3609988 | None:intergenic |
| TGATGGTGGATGTGTGATGG+AGG | 0.493985 | 4.4:+3609983 | None:intergenic |
| CTTGTTCTCTACACCAACTT+CGG | 0.499621 | 4.4:-3611383 | MS.gene20139:CDS |
| GGAGAGATGATAGTGGAGAT+GGG | 0.502154 | 4.4:+3610012 | None:intergenic |
| AGTGTTTGGATCCACACAAC+TGG | 0.507034 | 4.4:+3612340 | None:intergenic |
| CATTCTAATCATGATGATGA+TGG | 0.514227 | 4.4:+3607944 | None:intergenic |
| TGAAGCTTGTTAAAGGACTA+GGG | 0.515511 | 4.4:+3611054 | None:intergenic |
| GATGGTGGATGTGTGATGGA+GGG | 0.519141 | 4.4:+3609984 | None:intergenic |
| GGTGGTGGAAGGTCTGCGTC+TGG | 0.526615 | 4.4:-3608788 | MS.gene20139:CDS |
| TGTGACTTACAAGGAAGTAC+AGG | 0.531187 | 4.4:-3611485 | MS.gene20139:CDS |
| AGAATGAATTCATCAATCAA+AGG | 0.532417 | 4.4:+3611932 | None:intergenic |
| AAAACCCGAGAAGACAAATT+GGG | 0.533154 | 4.4:-3611351 | MS.gene20139:CDS |
| CATGGTAAGAATTGTCATCA+AGG | 0.534349 | 4.4:+3609959 | None:intergenic |
| ATGGTGGATGTGTGATGGAG+GGG | 0.535220 | 4.4:+3609985 | None:intergenic |
| GTGATGCATCAATACCATCT+TGG | 0.536833 | 4.4:-3611329 | MS.gene20139:CDS |
| TTTAAGGTGTTGAATATCCA+AGG | 0.540367 | 4.4:+3611025 | None:intergenic |
| CAGCAACAACATCATAAACT+AGG | 0.542717 | 4.4:-3608809 | MS.gene20139:CDS |
| AAGTGGAAGTTCTTCTTCCA+AGG | 0.544042 | 4.4:-3611126 | MS.gene20139:CDS |
| ACAACAACTGGTGAAGGAAG+TGG | 0.551888 | 4.4:-3611191 | MS.gene20139:CDS |
| CAACATGAAGAAGAGAAAGA+AGG | 0.555164 | 4.4:-3611305 | MS.gene20139:CDS |
| AGAATTGTCATCAAGGATGA+TGG | 0.555788 | 4.4:+3609966 | None:intergenic |
| GAATGAATTCATCAATCAAA+GGG | 0.558039 | 4.4:+3611933 | None:intergenic |
| GGATGATGGTGGATGTGTGA+TGG | 0.559886 | 4.4:+3609980 | None:intergenic |
| ACGCAGCTTTCCATATAAGT+AGG | 0.560422 | 4.4:-3610044 | MS.gene20139:CDS |
| TGTGGACACAAATTTGATCA+AGG | 0.561466 | 4.4:-3612309 | MS.gene20139:CDS |
| TTATAGGTTGGAATAGGAGA+AGG | 0.569160 | 4.4:-3610234 | MS.gene20139:intron |
| CAACATCATAAACTAGGTGG+TGG | 0.571157 | 4.4:-3608803 | MS.gene20139:CDS |
| ACCGAAGAGTGTGACTTACA+AGG | 0.573730 | 4.4:-3611494 | MS.gene20139:CDS |
| TGATCTCATAGATTCTAAGC+TGG | 0.574339 | 4.4:-3612370 | MS.gene20139:CDS |
| CAAATTTGTGTCCACAGCGA+GGG | 0.577429 | 4.4:+3612316 | None:intergenic |
| CAAATTTGATCAAGGCAAGC+CGG | 0.585518 | 4.4:-3612301 | MS.gene20139:intron |
| ATCATAAACTAGGTGGTGGA+AGG | 0.591383 | 4.4:-3608799 | MS.gene20139:CDS |
| TCCAAACACTGCCCTCGCTG+TGG | 0.598125 | 4.4:-3612327 | MS.gene20139:CDS |
| CTGGAAGAGCACCAGTTGTG+TGG | 0.599801 | 4.4:-3612351 | MS.gene20139:CDS |
| ATACAACAGGAACACGAAAG+AGG | 0.605890 | 4.4:-3611529 | MS.gene20139:CDS |
| GTTTGGAGGAAGTCATTATG+GGG | 0.614581 | 4.4:-3608766 | MS.gene20139:CDS |
| TGGAACTAACAGGATTGGCT+AGG | 0.614683 | 4.4:-3612049 | MS.gene20139:intron |
| ATAGTGGAGATGGGATTGGA+AGG | 0.617201 | 4.4:+3610021 | None:intergenic |
| TTGTTGTCATGAGGGTCGAC+TGG | 0.619843 | 4.4:+3607967 | None:intergenic |
| ACAACAACAACAACTGGTGA+AGG | 0.627737 | 4.4:-3611197 | MS.gene20139:CDS |
| TCAAATTTGTGTCCACAGCG+AGG | 0.631442 | 4.4:+3612315 | None:intergenic |
| GATTGGCTAGGTCTACCAGC+AGG | 0.635385 | 4.4:-3612037 | MS.gene20139:CDS |
| TGATGATGGTTGTTGTCATG+AGG | 0.638720 | 4.4:+3607958 | None:intergenic |
| AGGAGGCTCATGTGATCAGG+AGG | 0.640907 | 4.4:-3610184 | MS.gene20139:CDS |
| GATGATGGTTGTTGTCATGA+GGG | 0.647114 | 4.4:+3607959 | None:intergenic |
| AGAGAAATGCAAGCATCAGG+AGG | 0.653970 | 4.4:-3610201 | MS.gene20139:CDS |
| GTACAGGAGGAGAAACAAGA+TGG | 0.661050 | 4.4:-3611469 | MS.gene20139:CDS |
| ACAACTGGTGAAGGAAGTGG+TGG | 0.665064 | 4.4:-3611188 | MS.gene20139:CDS |
| GACTTACAAGGAAGTACAGG+AGG | 0.666650 | 4.4:-3611482 | MS.gene20139:CDS |
| ATTGTCATCAAGGATGATGG+TGG | 0.672021 | 4.4:+3609969 | None:intergenic |
| AACGTCGTCTGATATCAAAG+AGG | 0.681906 | 4.4:-3608735 | MS.gene20139:intron |
| GAAACCAACAAGAAGCTGAG+TGG | 0.685593 | 4.4:-3608011 | MS.gene20139:CDS |
| GGAGCATGATTGTTGAAACA+TGG | 0.690838 | 4.4:+3609941 | None:intergenic |
| CAACAACATCATAAACTAGG+TGG | 0.704443 | 4.4:-3608806 | MS.gene20139:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATAAAAAGCAATTAAA+GGG | + | chr4.4:3608270-3608289 | None:intergenic | 10.0% |
| !! | AATTAATTAATTAATTAACC+TGG | + | chr4.4:3608496-3608515 | None:intergenic | 10.0% |
| !! | TAAAAATAAAAAGCAATTAA+AGG | + | chr4.4:3608271-3608290 | None:intergenic | 10.0% |
| !!! | AAAAAAATTATCTCTAATTT+TGG | + | chr4.4:3609642-3609661 | None:intergenic | 10.0% |
| !!! | ATTTTTAATTTGAATTTCAA+TGG | - | chr4.4:3608284-3608303 | MS.gene20139:intron | 10.0% |
| !! | AAAAAAAAATAGTGTTTGTT+CGG | - | chr4.4:3611163-3611182 | MS.gene20139:CDS | 15.0% |
| !! | ACTAGTACATTAAATAAAAT+CGG | + | chr4.4:3610946-3610965 | None:intergenic | 15.0% |
| !! | AGTCTTTAGTTATAAAAAAT+AGG | + | chr4.4:3611767-3611786 | None:intergenic | 15.0% |
| !! | ATAATTTGAAAAAATGAAAG+TGG | + | chr4.4:3609503-3609522 | None:intergenic | 15.0% |
| !! | ATATTTGATACTATCATTAT+AGG | - | chr4.4:3610103-3610122 | MS.gene20139:CDS | 15.0% |
| !! | ATTAATTTAAATTCTCAGTT+AGG | - | chr4.4:3608569-3608588 | MS.gene20139:intron | 15.0% |
| !! | TTACCAATAAAAAATATTAG+AGG | + | chr4.4:3609665-3609684 | None:intergenic | 15.0% |
| !! | TTATATGAAATTTCAACATT+CGG | - | chr4.4:3609803-3609822 | MS.gene20139:intron | 15.0% |
| !!! | TAAATTCATTGATTTATACT+AGG | - | chr4.4:3611359-3611378 | MS.gene20139:CDS | 15.0% |
| !!! | TTTCCTCTAATATTTTTTAT+TGG | - | chr4.4:3609659-3609678 | MS.gene20139:intron | 15.0% |
| !! | AACTTTAATAATTTGACTCA+CGG | + | chr4.4:3610768-3610787 | None:intergenic | 20.0% |
| !! | AATAAAGATGAAGATGAAAA+TGG | + | chr4.4:3611795-3611814 | None:intergenic | 20.0% |
| !! | ACCTATTTATTTATTTATCG+TGG | - | chr4.4:3610866-3610885 | MS.gene20139:intron | 20.0% |
| !! | CATGAAAAGAAGATTAATTA+GGG | + | chr4.4:3612284-3612303 | None:intergenic | 20.0% |
| !! | CTAGTACATTAAATAAAATC+GGG | + | chr4.4:3610945-3610964 | None:intergenic | 20.0% |
| !! | CTTCCATTGATATTATAATT+AGG | + | chr4.4:3609195-3609214 | None:intergenic | 20.0% |
| !! | GAAAAAAAAGAAGATGAATA+TGG | + | chr4.4:3611885-3611904 | None:intergenic | 20.0% |
| !! | GAACCTAATTATAATATCAA+TGG | - | chr4.4:3609189-3609208 | MS.gene20139:intron | 20.0% |
| !! | TAGTTCTCTTAAGTTAATAA+AGG | + | chr4.4:3611054-3611073 | None:intergenic | 20.0% |
| !! | TCATGAAAAGAAGATTAATT+AGG | + | chr4.4:3612285-3612304 | None:intergenic | 20.0% |
| !!! | CAAACACTATTTTTTTTTAC+TGG | + | chr4.4:3611161-3611180 | None:intergenic | 20.0% |
| !!! | TAGATTTTTAAAAGAGAATG+AGG | - | chr4.4:3610839-3610858 | MS.gene20139:intron | 20.0% |
| !!! | TTGTGAATTTTAACAAATCA+TGG | + | chr4.4:3611128-3611147 | None:intergenic | 20.0% |
| ! | AAAGAACATGCATGAAATTA+AGG | - | chr4.4:3609858-3609877 | MS.gene20139:intron | 25.0% |
| ! | AAGAACATGCATGAAATTAA+GGG | - | chr4.4:3609859-3609878 | MS.gene20139:intron | 25.0% |
| ! | AATATAGCATAGCATTTGAT+TGG | - | chr4.4:3609699-3609718 | MS.gene20139:intron | 25.0% |
| ! | ACATGAAATGAGTTTAATGA+AGG | + | chr4.4:3609587-3609606 | None:intergenic | 25.0% |
| ! | ACTATGGTGACATAATTTAA+TGG | - | chr4.4:3608119-3608138 | MS.gene20139:intron | 25.0% |
| ! | AGAATGAATTCATCAATCAA+AGG | + | chr4.4:3608424-3608443 | None:intergenic | 25.0% |
| ! | ATGGTTAATGGTAAACAAAA+AGG | - | chr4.4:3608934-3608953 | MS.gene20139:intron | 25.0% |
| ! | ATGTATAATATGTATCCACA+TGG | - | chr4.4:3611509-3611528 | MS.gene20139:CDS | 25.0% |
| ! | GAATGAATTCATCAATCAAA+GGG | + | chr4.4:3608423-3608442 | None:intergenic | 25.0% |
| ! | GCCACGATAAATAAATAAAT+AGG | + | chr4.4:3610870-3610889 | None:intergenic | 25.0% |
| ! | TAAAAGTTCTATCACGATTT+AGG | + | chr4.4:3611028-3611047 | None:intergenic | 25.0% |
| ! | TCAAACACTTACAAATACTT+TGG | + | chr4.4:3609554-3609573 | None:intergenic | 25.0% |
| ! | TCAATATGTTGAACCAAAAT+GGG | - | chr4.4:3611307-3611326 | MS.gene20139:CDS | 25.0% |
| ! | TTGAATGTAACTATGTATGT+CGG | + | chr4.4:3609480-3609499 | None:intergenic | 25.0% |
| ! | TTGATACTATCATTATAGGT+TGG | - | chr4.4:3610107-3610126 | MS.gene20139:CDS | 25.0% |
| !! | AACATTTTCTTTTCTTAGCT+AGG | + | chr4.4:3610018-3610037 | None:intergenic | 25.0% |
| !! | CCAACAAAATGAAAATTTTC+AGG | - | chr4.4:3610433-3610452 | MS.gene20139:intron | 25.0% |
| !! | CCTGAAAATTTTCATTTTGT+TGG | + | chr4.4:3610436-3610455 | None:intergenic | 25.0% |
| !! | GTCCATACAAATTAATTTTG+CGG | + | chr4.4:3609940-3609959 | None:intergenic | 25.0% |
| !! | TATAATCCCTTTTCTCATTT+AGG | - | chr4.4:3608146-3608165 | MS.gene20139:intron | 25.0% |
| !!! | ATTTTTTACAAACAAGACCA+AGG | + | chr4.4:3612124-3612143 | None:intergenic | 25.0% |
| !!! | CATTTTAAAGATCTAAAGAG+AGG | + | chr4.4:3611907-3611926 | None:intergenic | 25.0% |
| !!! | TAGGAAAGGTTTTATATATG+TGG | - | chr4.4:3611378-3611397 | MS.gene20139:CDS | 25.0% |
| !!! | TCATTGATTTATACTAGGAA+AGG | - | chr4.4:3611364-3611383 | MS.gene20139:CDS | 25.0% |
| !!! | TTAACTTGGTGCAAATTAAT+GGG | - | chr4.4:3611280-3611299 | MS.gene20139:CDS | 25.0% |
| !!! | TTATGTCACCATAGTTTTAA+AGG | + | chr4.4:3608114-3608133 | None:intergenic | 25.0% |
| !!! | TTTTTTTTACTGGAAAGAAC+AGG | + | chr4.4:3611151-3611170 | None:intergenic | 25.0% |
| AAGAAATAAACTTGAGCAAG+AGG | - | chr4.4:3608677-3608696 | MS.gene20139:intron | 30.0% | |
| AATCTGAGTAACAATTTCCT+TGG | + | chr4.4:3609247-3609266 | None:intergenic | 30.0% | |
| AGAAATAAACTTGAGCAAGA+GGG | - | chr4.4:3608678-3608697 | MS.gene20139:intron | 30.0% | |
| AGCTGAAATGATCAGATTTA+AGG | + | chr4.4:3609347-3609366 | None:intergenic | 30.0% | |
| ATAGCTACCTAAATGAGAAA+AGG | + | chr4.4:3608156-3608175 | None:intergenic | 30.0% | |
| ATGAAATTTCAACATTCGGT+TGG | - | chr4.4:3609807-3609826 | MS.gene20139:intron | 30.0% | |
| ATGCATGAAATTAAGGGTTA+AGG | - | chr4.4:3609865-3609884 | MS.gene20139:intron | 30.0% | |
| ATTTCGAAAAAGCTATGATG+AGG | - | chr4.4:3609374-3609393 | MS.gene20139:intron | 30.0% | |
| CAAAGTTAGGTGACTTAATT+AGG | + | chr4.4:3608729-3608748 | None:intergenic | 30.0% | |
| CAATATGTTGAACCAAAATG+GGG | - | chr4.4:3611308-3611327 | MS.gene20139:CDS | 30.0% | |
| CTCAATATGTTGAACCAAAA+TGG | - | chr4.4:3611306-3611325 | MS.gene20139:CDS | 30.0% | |
| GAATTCATTCTCACTATTGA+AGG | - | chr4.4:3608433-3608452 | MS.gene20139:intron | 30.0% | |
| GATATTCATTTCAAACTCTG+AGG | + | chr4.4:3612229-3612248 | None:intergenic | 30.0% | |
| TAAAGGGAGAGAAATCAATA+AGG | + | chr4.4:3608254-3608273 | None:intergenic | 30.0% | |
| TAGCTACCTAAATGAGAAAA+GGG | + | chr4.4:3608155-3608174 | None:intergenic | 30.0% | |
| TCAATCAATTCTTGATCTGT+TGG | + | chr4.4:3608355-3608374 | None:intergenic | 30.0% | |
| TCATTGCCAAAATCAAAGTT+AGG | + | chr4.4:3608742-3608761 | None:intergenic | 30.0% | |
| TGAATTTCAATGGAACTAAC+AGG | - | chr4.4:3608294-3608313 | MS.gene20139:intron | 30.0% | |
| TGTTTACCATTAACCATAAC+AGG | + | chr4.4:3608931-3608950 | None:intergenic | 30.0% | |
| TTTACTCAACCAAATACATG+TGG | - | chr4.4:3611237-3611256 | MS.gene20139:CDS | 30.0% | |
| ! | AATTAACCTGGAAGTTTTTC+TGG | + | chr4.4:3608484-3608503 | None:intergenic | 30.0% |
| ! | ACTCATCGTTAAACTTTTTG+AGG | - | chr4.4:3610657-3610676 | MS.gene20139:intron | 30.0% |
| ! | ATTTTCTTTTCTTAGCTAGG+TGG | + | chr4.4:3610015-3610034 | None:intergenic | 30.0% |
| ! | CTATCATTATAGGTTGGAAT+AGG | - | chr4.4:3610113-3610132 | MS.gene20139:CDS | 30.0% |
| ! | TTAGCTATTTCACACAAGAA+AGG | - | chr4.4:3612041-3612060 | MS.gene20139:intron | 30.0% |
| ! | TTTTCTTTTCTTAGCTAGGT+GGG | + | chr4.4:3610014-3610033 | None:intergenic | 30.0% |
| !! | AAGTCACCTAACTTTGATTT+TGG | - | chr4.4:3608733-3608752 | MS.gene20139:intron | 30.0% |
| !! | ACAGTTTCATGCTTGTTATT+TGG | + | chr4.4:3611407-3611426 | None:intergenic | 30.0% |
| !! | CACCGCAAAATTAATTTGTA+TGG | - | chr4.4:3609935-3609954 | MS.gene20139:CDS | 30.0% |
| !! | CTTAACTTGGTGCAAATTAA+TGG | - | chr4.4:3611279-3611298 | MS.gene20139:CDS | 30.0% |
| !! | GATTTTGGCAATGAATTTTC+AGG | - | chr4.4:3608748-3608767 | MS.gene20139:CDS | 30.0% |
| !! | TCATGTATTTTTGCATTCCT+TGG | - | chr4.4:3612104-3612123 | MS.gene20139:intron | 30.0% |
| !! | TTTAAGGTGTTGAATATCCA+AGG | + | chr4.4:3609331-3609350 | None:intergenic | 30.0% |
| !!! | CATCATAGCTTTTTCGAAAT+GGG | + | chr4.4:3609374-3609393 | None:intergenic | 30.0% |
| !!! | TCATCATAGCTTTTTCGAAA+TGG | + | chr4.4:3609375-3609394 | None:intergenic | 30.0% |
| !!! | TTTTGGTTCAACATATTGAG+TGG | + | chr4.4:3611306-3611325 | None:intergenic | 30.0% |
| AAAACCCGAGAAGACAAATT+GGG | - | chr4.4:3609002-3609021 | MS.gene20139:intron | 35.0% | |
| ACAATGCAATGGAAATTGAC+TGG | + | chr4.4:3612189-3612208 | None:intergenic | 35.0% | |
| AGAAAAGAGGTCTCTTAACT+TGG | - | chr4.4:3611266-3611285 | MS.gene20139:CDS | 35.0% | |
| AGAATTGTCATCAAGGATGA+TGG | + | chr4.4:3610390-3610409 | None:intergenic | 35.0% | |
| ATCAATGGAAGAAGAGATAG+TGG | - | chr4.4:3609204-3609223 | MS.gene20139:intron | 35.0% | |
| ATCTTCATTACACTTCTCAC+AGG | - | chr4.4:3612307-3612326 | MS.gene20139:CDS | 35.0% | |
| CAACAACATCATAAACTAGG+TGG | - | chr4.4:3611547-3611566 | MS.gene20139:CDS | 35.0% | |
| CAACATGAAGAAGAGAAAGA+AGG | - | chr4.4:3609048-3609067 | MS.gene20139:intron | 35.0% | |
| CAGCAACAACATCATAAACT+AGG | - | chr4.4:3611544-3611563 | MS.gene20139:CDS | 35.0% | |
| CATAGCATTTGATTGGAACA+TGG | - | chr4.4:3609706-3609725 | MS.gene20139:intron | 35.0% | |
| CATGGTAAGAATTGTCATCA+AGG | + | chr4.4:3610397-3610416 | None:intergenic | 35.0% | |
| CATGTTCTTTGACTCAACTT+TGG | + | chr4.4:3608389-3608408 | None:intergenic | 35.0% | |
| GGTTGAAATACTCTTCTTAC+TGG | - | chr4.4:3612363-3612382 | MS.gene20139:CDS | 35.0% | |
| GTACACAGAAAACAATGCAA+TGG | + | chr4.4:3612200-3612219 | None:intergenic | 35.0% | |
| GTCTCACATCAAGTATATTG+AGG | + | chr4.4:3611006-3611025 | None:intergenic | 35.0% | |
| TATCGTCATCGTTGATATTG+TGG | - | chr4.4:3610971-3610990 | MS.gene20139:intron | 35.0% | |
| TCGCTAGGAAAAAACTATAG+CGG | - | chr4.4:3610589-3610608 | MS.gene20139:intron | 35.0% | |
| TCTCACTTTCCACATGTATT+TGG | + | chr4.4:3611249-3611268 | None:intergenic | 35.0% | |
| TCTCATAATAATGCCCACTA+GGG | - | chr4.4:3611692-3611711 | MS.gene20139:intron | 35.0% | |
| TGATCTCATAGATTCTAAGC+TGG | - | chr4.4:3607983-3608002 | MS.gene20139:CDS | 35.0% | |
| TGATTGTCAATTGTCATCGA+TGG | - | chr4.4:3611439-3611458 | MS.gene20139:CDS | 35.0% | |
| TGTGGACACAAATTTGATCA+AGG | - | chr4.4:3608044-3608063 | MS.gene20139:intron | 35.0% | |
| TTCAATGGAACTAACAGGAT+TGG | - | chr4.4:3608299-3608318 | MS.gene20139:intron | 35.0% | |
| TTCTCATAATAATGCCCACT+AGG | - | chr4.4:3611691-3611710 | MS.gene20139:intron | 35.0% | |
| ! | ACTATGATGACGTGGAAAAA+AGG | - | chr4.4:3612162-3612181 | MS.gene20139:intron | 35.0% |
| ! | ACTCACGGTTAAACATTTTG+AGG | + | chr4.4:3610753-3610772 | None:intergenic | 35.0% |
| ! | CTTTTTCCATAGACCATCAA+AGG | - | chr4.4:3608798-3608817 | MS.gene20139:CDS | 35.0% |
| ! | TATATGCCTTTGATGGTCTA+TGG | + | chr4.4:3608807-3608826 | None:intergenic | 35.0% |
| ! | TTATAGGTTGGAATAGGAGA+AGG | - | chr4.4:3610119-3610138 | MS.gene20139:CDS | 35.0% |
| !! | ACTGACACTGATTTATCATC+TGG | + | chr4.4:3609967-3609986 | None:intergenic | 35.0% |
| !! | AGCTTCTTGTTGGTTTCTAA+TGG | + | chr4.4:3612339-3612358 | None:intergenic | 35.0% |
| !! | GCATTTGTGAAGCTTGTTAA+AGG | + | chr4.4:3609309-3609328 | None:intergenic | 35.0% |
| !! | TGAAGCTTGTTAAAGGACTA+GGG | + | chr4.4:3609302-3609321 | None:intergenic | 35.0% |
| AACAAGCTTCACAAATGCCT+TGG | - | chr4.4:3609311-3609330 | MS.gene20139:intron | 40.0% | |
| AACGTCGTCTGATATCAAAG+AGG | - | chr4.4:3611618-3611637 | MS.gene20139:intron | 40.0% | |
| AAGTGGAAGTTCTTCTTCCA+AGG | - | chr4.4:3609227-3609246 | MS.gene20139:intron | 40.0% | |
| ACAACAACAACAACTGGTGA+AGG | - | chr4.4:3609156-3609175 | MS.gene20139:intron | 40.0% | |
| ACAAGAGAAATGCAAGCATC+AGG | - | chr4.4:3610149-3610168 | MS.gene20139:CDS | 40.0% | |
| ACCAGACCTGTTATGGTTAA+TGG | - | chr4.4:3608922-3608941 | MS.gene20139:intron | 40.0% | |
| ACCATTAACCATAACAGGTC+TGG | + | chr4.4:3608926-3608945 | None:intergenic | 40.0% | |
| ACGCAGCTTTCCATATAAGT+AGG | - | chr4.4:3610309-3610328 | MS.gene20139:intron | 40.0% | |
| AGTGCAACAACAACAACAAC+TGG | - | chr4.4:3609150-3609169 | MS.gene20139:intron | 40.0% | |
| ATACAACAGGAACACGAAAG+AGG | - | chr4.4:3608824-3608843 | MS.gene20139:intron | 40.0% | |
| ATCACCCAATTTGTCTTCTC+GGG | + | chr4.4:3609009-3609028 | None:intergenic | 40.0% | |
| CAAATTTGATCAAGGCAAGC+CGG | - | chr4.4:3608052-3608071 | MS.gene20139:intron | 40.0% | |
| CAACATCATAAACTAGGTGG+TGG | - | chr4.4:3611550-3611569 | MS.gene20139:CDS | 40.0% | |
| CACTAGGGAAAGAGAAAAGA+GGG | - | chr4.4:3611707-3611726 | MS.gene20139:intron | 40.0% | |
| CATCACCCAATTTGTCTTCT+CGG | + | chr4.4:3609010-3609029 | None:intergenic | 40.0% | |
| CATGTGGAAAGTGAGAAAAG+AGG | - | chr4.4:3611253-3611272 | MS.gene20139:CDS | 40.0% | |
| CCTGTTGTATATGCCTTTGA+TGG | + | chr4.4:3608814-3608833 | None:intergenic | 40.0% | |
| CGCTAGGAAAAAACTATAGC+GGG | - | chr4.4:3610590-3610609 | MS.gene20139:intron | 40.0% | |
| CTCACTATTGAAGGAGAAGA+TGG | - | chr4.4:3608442-3608461 | MS.gene20139:intron | 40.0% | |
| CTTCTTCATGTTGTCCAAGA+TGG | + | chr4.4:3609041-3609060 | None:intergenic | 40.0% | |
| CTTGTTCTCTACACCAACTT+CGG | - | chr4.4:3608970-3608989 | MS.gene20139:intron | 40.0% | |
| GAAAACCCGAGAAGACAAAT+TGG | - | chr4.4:3609001-3609020 | MS.gene20139:intron | 40.0% | |
| GAAACAAGATGGCACAAAAC+TGG | - | chr4.4:3608895-3608914 | MS.gene20139:intron | 40.0% | |
| GATGAAATGTCTGCTGTTGT+TGG | - | chr4.4:3609273-3609292 | MS.gene20139:intron | 40.0% | |
| GATTGGAAGGCCTACTTATA+TGG | + | chr4.4:3610322-3610341 | None:intergenic | 40.0% | |
| GGAGCATGATTGTTGAAACA+TGG | + | chr4.4:3610415-3610434 | None:intergenic | 40.0% | |
| GGTTTGGAGGAAGTCATTAT+GGG | - | chr4.4:3611586-3611605 | MS.gene20139:CDS | 40.0% | |
| GTAACTATGTATGTCGGTGT+CGG | + | chr4.4:3609474-3609493 | None:intergenic | 40.0% | |
| GTGATGCATCAATACCATCT+TGG | - | chr4.4:3609024-3609043 | MS.gene20139:intron | 40.0% | |
| GTTTGGAGGAAGTCATTATG+GGG | - | chr4.4:3611587-3611606 | MS.gene20139:intron | 40.0% | |
| TCAGACCAATTACACTGTCT+TGG | + | chr4.4:3609111-3609130 | None:intergenic | 40.0% | |
| TCCTTGTAAGTCACACTCTT+CGG | + | chr4.4:3608863-3608882 | None:intergenic | 40.0% | |
| ! | AAAATGGGGTTGATTGTGCA+TGG | - | chr4.4:3611322-3611341 | MS.gene20139:CDS | 40.0% |
| ! | AACCTGGAAGTTTTTCTGGA+TGG | + | chr4.4:3608480-3608499 | None:intergenic | 40.0% |
| ! | ACCTGGAAGTTTTTCTGGAT+GGG | + | chr4.4:3608479-3608498 | None:intergenic | 40.0% |
| ! | ATGCACAATCAACCCCATTT+TGG | + | chr4.4:3611323-3611342 | None:intergenic | 40.0% |
| ! | ATTGTCATCAAGGATGATGG+TGG | + | chr4.4:3610387-3610406 | None:intergenic | 40.0% |
| ! | CCATCAAAGGCATATACAAC+AGG | - | chr4.4:3608811-3608830 | MS.gene20139:CDS | 40.0% |
| ! | CTCTTTTCTCTTTCCCTAGT+GGG | + | chr4.4:3611708-3611727 | None:intergenic | 40.0% |
| ! | GATGATGGTTGTTGTCATGA+GGG | + | chr4.4:3612397-3612416 | None:intergenic | 40.0% |
| ! | TGGTTTGGAGGAAGTCATTA+TGG | - | chr4.4:3611585-3611604 | MS.gene20139:CDS | 40.0% |
| ! | TGTGACTTACAAGGAAGTAC+AGG | - | chr4.4:3608868-3608887 | MS.gene20139:intron | 40.0% |
| ! | TTTTCGATTCTTGCCGAAGT+TGG | + | chr4.4:3608986-3609005 | None:intergenic | 40.0% |
| !! | AGCTTTTGACTATGATGACG+TGG | - | chr4.4:3612154-3612173 | MS.gene20139:intron | 40.0% |
| !! | ATCATAAACTAGGTGGTGGA+AGG | - | chr4.4:3611554-3611573 | MS.gene20139:CDS | 40.0% |
| !! | CACTGATTTATCATCTGGTC+AGG | + | chr4.4:3609962-3609981 | None:intergenic | 40.0% |
| !! | GCTGCGAACCTTTAAAACTA+TGG | - | chr4.4:3608103-3608122 | MS.gene20139:intron | 40.0% |
| !! | GTGAAGCTTGTTAAAGGACT+AGG | + | chr4.4:3609303-3609322 | None:intergenic | 40.0% |
| !! | TGATGATGGTTGTTGTCATG+AGG | + | chr4.4:3612398-3612417 | None:intergenic | 40.0% |
| !! | TTTTCAGGAGTGACAAGAGA+TGG | - | chr4.4:3608763-3608782 | MS.gene20139:CDS | 40.0% |
| ACAACAACTGGTGAAGGAAG+TGG | - | chr4.4:3609162-3609181 | MS.gene20139:intron | 45.0% | |
| ACAATTGCGATTGCATCGCT+AGG | - | chr4.4:3610574-3610593 | MS.gene20139:intron | 45.0% | |
| ACCCATCCAGAAAAACTTCC+AGG | - | chr4.4:3608475-3608494 | MS.gene20139:intron | 45.0% | |
| ACCGCGACTATTATACGTAC+CGG | + | chr4.4:3608074-3608093 | None:intergenic | 45.0% | |
| AGAGAAATGCAAGCATCAGG+AGG | - | chr4.4:3610152-3610171 | MS.gene20139:CDS | 45.0% | |
| AGTAGCTAGCTAACCAACGT+TGG | - | chr4.4:3609984-3610003 | MS.gene20139:CDS | 45.0% | |
| AGTGTTTGGATCCACACAAC+TGG | + | chr4.4:3608016-3608035 | None:intergenic | 45.0% | |
| CAAATTTGTGTCCACAGCGA+GGG | + | chr4.4:3608040-3608059 | None:intergenic | 45.0% | |
| CACAGCCAAGACAGTGTAAT+TGG | - | chr4.4:3609103-3609122 | MS.gene20139:intron | 45.0% | |
| CCACTAGGGAAAGAGAAAAG+AGG | - | chr4.4:3611706-3611725 | MS.gene20139:intron | 45.0% | |
| GAAACCAACAAGAAGCTGAG+TGG | - | chr4.4:3612342-3612361 | MS.gene20139:CDS | 45.0% | |
| GGATCAAATTTCACTCCTGC+TGG | + | chr4.4:3608334-3608353 | None:intergenic | 45.0% | |
| GTACAGGAGGAGAAACAAGA+TGG | - | chr4.4:3608884-3608903 | MS.gene20139:intron | 45.0% | |
| TCAAATTTGTGTCCACAGCG+AGG | + | chr4.4:3608041-3608060 | None:intergenic | 45.0% | |
| TCAACCACTCAGCTTCTTGT+TGG | + | chr4.4:3612349-3612368 | None:intergenic | 45.0% | |
| TGGTAAGACCAGACCTGTTA+TGG | - | chr4.4:3608915-3608934 | MS.gene20139:intron | 45.0% | |
| ! | ACCGAAGAGTGTGACTTACA+AGG | - | chr4.4:3608859-3608878 | MS.gene20139:intron | 45.0% |
| ! | ATAGTGGAGATGGGATTGGA+AGG | + | chr4.4:3610335-3610354 | None:intergenic | 45.0% |
| ! | CCTCTTTTCTCTTTCCCTAG+TGG | + | chr4.4:3611709-3611728 | None:intergenic | 45.0% |
| ! | GACTTACAAGGAAGTACAGG+AGG | - | chr4.4:3608871-3608890 | MS.gene20139:intron | 45.0% |
| !! | GATGATAGTGGAGATGGGAT+TGG | + | chr4.4:3610339-3610358 | None:intergenic | 45.0% |
| !! | GGAAGAAGAGATAGTGGAAG+TGG | - | chr4.4:3609210-3609229 | MS.gene20139:intron | 45.0% |
| !! | GGAGAGATGATAGTGGAGAT+GGG | + | chr4.4:3610344-3610363 | None:intergenic | 45.0% |
| !! | TGGAACTAACAGGATTGGCT+AGG | - | chr4.4:3608304-3608323 | MS.gene20139:intron | 45.0% |
| !! | TGGAGAGATGATAGTGGAGA+TGG | + | chr4.4:3610345-3610364 | None:intergenic | 45.0% |
| !!! | AATTATTAAAGTTTTATTAA+TGG | - | chr4.4:3610775-3610794 | MS.gene20139:intron | 5.0% |
| !!! | CTTTTTTATAAATAAAAATT+GGG | - | chr4.4:3610912-3610931 | MS.gene20139:intron | 5.0% |
| !!! | TCTTTTTTATAAATAAAAAT+TGG | - | chr4.4:3610911-3610930 | MS.gene20139:intron | 5.0% |
| !!! | TTTTTTATAAATAAAAATTG+GGG | - | chr4.4:3610913-3610932 | MS.gene20139:intron | 5.0% |
| ACAACTGGTGAAGGAAGTGG+TGG | - | chr4.4:3609165-3609184 | MS.gene20139:intron | 50.0% | |
| ACGTATAATAGTCGCGGTCG+CGG | - | chr4.4:3608076-3608095 | MS.gene20139:intron | 50.0% | |
| ATCAGGAGGCTCATGTGATC+AGG | - | chr4.4:3610166-3610185 | MS.gene20139:CDS | 50.0% | |
| CTAGGTGGGTAAACCAACGT+TGG | + | chr4.4:3610000-3610019 | None:intergenic | 50.0% | |
| CTGCGTTTGCACTAATCTGC+TGG | + | chr4.4:3610295-3610314 | None:intergenic | 50.0% | |
| GCCGGTACGTATAATAGTCG+CGG | - | chr4.4:3608070-3608089 | MS.gene20139:intron | 50.0% | |
| TTGTTGTCATGAGGGTCGAC+TGG | + | chr4.4:3612389-3612408 | None:intergenic | 50.0% | |
| !! | ATGGTGGATGTGTGATGGAG+GGG | + | chr4.4:3610371-3610390 | None:intergenic | 50.0% |
| !! | ATGTATGTCGGTGTCGGACA+TGG | + | chr4.4:3609468-3609487 | None:intergenic | 50.0% |
| !! | GATGGTGGATGTGTGATGGA+GGG | + | chr4.4:3610372-3610391 | None:intergenic | 50.0% |
| !! | GGATGATGGTGGATGTGTGA+TGG | + | chr4.4:3610376-3610395 | None:intergenic | 50.0% |
| !! | TGATGGTGGATGTGTGATGG+AGG | + | chr4.4:3610373-3610392 | None:intergenic | 50.0% |
| AGGAGGCTCATGTGATCAGG+AGG | - | chr4.4:3610169-3610188 | MS.gene20139:CDS | 55.0% | |
| GGGAGGTGGAGAGATGATAG+TGG | + | chr4.4:3610351-3610370 | None:intergenic | 55.0% | |
| TGGAAGGTCTGCGTCTGGTT+TGG | - | chr4.4:3611570-3611589 | MS.gene20139:CDS | 55.0% | |
| ! | GATTGGCTAGGTCTACCAGC+AGG | - | chr4.4:3608316-3608335 | MS.gene20139:intron | 55.0% |
| !! | AAGGTCTGCGTCTGGTTTGG+AGG | - | chr4.4:3611573-3611592 | MS.gene20139:CDS | 55.0% |
| !! | CTGGAAGAGCACCAGTTGTG+TGG | - | chr4.4:3608002-3608021 | MS.gene20139:CDS | 55.0% |
| CTGCTGCTGTTGCTGCCATG+TGG | + | chr4.4:3611527-3611546 | None:intergenic | 60.0% | |
| TCCAAACACTGCCCTCGCTG+TGG | - | chr4.4:3608026-3608045 | MS.gene20139:CDS | 60.0% | |
| TCCACAGCGAGGGCAGTGTT+TGG | + | chr4.4:3608030-3608049 | None:intergenic | 60.0% | |
| ! | GATGTGTGATGGAGGGGAGG+TGG | + | chr4.4:3610365-3610384 | None:intergenic | 60.0% |
| ! | GTGGATGTGTGATGGAGGGG+AGG | + | chr4.4:3610368-3610387 | None:intergenic | 60.0% |
| !! | GGTGGTGGAAGGTCTGCGTC+TGG | - | chr4.4:3611565-3611584 | MS.gene20139:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 3607948 | 3612427 | 3607948 | ID=MS.gene20139 |
| chr4.4 | mRNA | 3607948 | 3612427 | 3607948 | ID=MS.gene20139.t1;Parent=MS.gene20139 |
| chr4.4 | exon | 3612302 | 3612427 | 3612302 | ID=MS.gene20139.t1.exon1;Parent=MS.gene20139.t1 |
| chr4.4 | CDS | 3612302 | 3612427 | 3612302 | ID=cds.MS.gene20139.t1;Parent=MS.gene20139.t1 |
| chr4.4 | exon | 3611879 | 3612059 | 3611879 | ID=MS.gene20139.t1.exon2;Parent=MS.gene20139.t1 |
| chr4.4 | CDS | 3611879 | 3612059 | 3611879 | ID=cds.MS.gene20139.t1;Parent=MS.gene20139.t1 |
| chr4.4 | exon | 3610980 | 3611605 | 3610980 | ID=MS.gene20139.t1.exon3;Parent=MS.gene20139.t1 |
| chr4.4 | CDS | 3610980 | 3611605 | 3610980 | ID=cds.MS.gene20139.t1;Parent=MS.gene20139.t1 |
| chr4.4 | exon | 3609921 | 3610250 | 3609921 | ID=MS.gene20139.t1.exon4;Parent=MS.gene20139.t1 |
| chr4.4 | CDS | 3609921 | 3610250 | 3609921 | ID=cds.MS.gene20139.t1;Parent=MS.gene20139.t1 |
| chr4.4 | exon | 3608736 | 3608840 | 3608736 | ID=MS.gene20139.t1.exon5;Parent=MS.gene20139.t1 |
| chr4.4 | CDS | 3608736 | 3608840 | 3608736 | ID=cds.MS.gene20139.t1;Parent=MS.gene20139.t1 |
| chr4.4 | exon | 3607948 | 3608046 | 3607948 | ID=MS.gene20139.t1.exon6;Parent=MS.gene20139.t1 |
| chr4.4 | CDS | 3607948 | 3608046 | 3607948 | ID=cds.MS.gene20139.t1;Parent=MS.gene20139.t1 |
| Gene Sequence |
| Protein sequence |
