Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20167.t1 | XP_003630638.1 | 92.2 | 281 | 14 | 4 | 1 | 274 | 1 | 280 | 2.90E-115 | 424.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20167.t1 | Q9LVS0 | 47.6 | 170 | 74 | 5 | 4 | 169 | 3 | 161 | 1.9e-30 | 134.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20167.t1 | G7LJK1 | 92.2 | 281 | 14 | 4 | 1 | 274 | 1 | 280 | 2.1e-115 | 424.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene20167.t1 | TF | MYB-related |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20167.t1 | MTR_8g101650 | 92.527 | 281 | 13 | 4 | 1 | 274 | 1 | 280 | 2.66e-169 | 469 |
| MS.gene20167.t1 | MTR_6g092540 | 52.145 | 303 | 102 | 13 | 1 | 274 | 1 | 289 | 6.36e-75 | 230 |
| MS.gene20167.t1 | MTR_2g100930 | 53.371 | 178 | 65 | 5 | 4 | 169 | 3 | 174 | 2.08e-46 | 159 |
| MS.gene20167.t1 | MTR_4g100630 | 47.283 | 184 | 67 | 6 | 4 | 176 | 3 | 167 | 1.06e-43 | 151 |
| MS.gene20167.t1 | MTR_5g037080 | 45.143 | 175 | 73 | 5 | 4 | 168 | 5 | 166 | 5.11e-38 | 136 |
| MS.gene20167.t1 | MTR_4g111975 | 67.089 | 79 | 25 | 1 | 99 | 176 | 132 | 210 | 3.81e-33 | 123 |
| MS.gene20167.t1 | MTR_3g104370 | 35.741 | 263 | 128 | 8 | 4 | 260 | 5 | 232 | 8.36e-32 | 117 |
| MS.gene20167.t1 | MTR_7g067080 | 76.056 | 71 | 16 | 1 | 99 | 168 | 134 | 204 | 8.98e-31 | 117 |
| MS.gene20167.t1 | MTR_3g462790 | 71.233 | 73 | 20 | 1 | 97 | 168 | 139 | 211 | 2.63e-30 | 116 |
| MS.gene20167.t1 | MTR_5g069710 | 70.270 | 74 | 21 | 1 | 96 | 168 | 123 | 196 | 3.07e-30 | 115 |
| MS.gene20167.t1 | MTR_1g111830 | 62.791 | 86 | 31 | 1 | 84 | 168 | 103 | 188 | 1.06e-29 | 112 |
| MS.gene20167.t1 | MTR_5g081860 | 64.474 | 76 | 24 | 1 | 96 | 168 | 116 | 191 | 5.46e-27 | 106 |
| MS.gene20167.t1 | MTR_4g107230 | 79.245 | 53 | 11 | 0 | 99 | 151 | 78 | 130 | 9.66e-27 | 105 |
| MS.gene20167.t1 | MTR_0036s0260 | 52.000 | 100 | 34 | 4 | 89 | 181 | 6 | 98 | 3.00e-25 | 99.8 |
| MS.gene20167.t1 | MTR_8g063600 | 60.000 | 80 | 29 | 1 | 99 | 175 | 100 | 179 | 2.09e-24 | 99.8 |
| MS.gene20167.t1 | MTR_2g090305 | 53.000 | 100 | 33 | 4 | 89 | 181 | 6 | 98 | 1.81e-23 | 94.7 |
| MS.gene20167.t1 | MTR_1g048660 | 55.263 | 76 | 33 | 1 | 106 | 180 | 13 | 88 | 7.98e-23 | 90.1 |
| MS.gene20167.t1 | MTR_5g088010 | 49.383 | 81 | 37 | 2 | 97 | 173 | 52 | 132 | 6.89e-19 | 84.0 |
| MS.gene20167.t1 | MTR_5g027570 | 52.632 | 76 | 33 | 2 | 101 | 173 | 88 | 163 | 1.18e-18 | 82.8 |
| MS.gene20167.t1 | MTR_1g033620 | 65.455 | 55 | 18 | 1 | 120 | 173 | 20 | 74 | 1.10e-17 | 80.5 |
| MS.gene20167.t1 | MTR_8g063870 | 54.286 | 70 | 29 | 1 | 107 | 173 | 94 | 163 | 1.59e-17 | 80.5 |
| MS.gene20167.t1 | MTR_5g088060 | 54.930 | 71 | 28 | 2 | 107 | 173 | 274 | 344 | 2.79e-17 | 81.6 |
| MS.gene20167.t1 | MTR_5g488160 | 54.930 | 71 | 28 | 2 | 107 | 173 | 274 | 344 | 2.79e-17 | 81.6 |
| MS.gene20167.t1 | MTR_4g015130 | 65.455 | 55 | 18 | 1 | 115 | 168 | 3 | 57 | 5.08e-16 | 71.6 |
| MS.gene20167.t1 | MTR_5g027550 | 57.143 | 56 | 24 | 0 | 101 | 156 | 73 | 128 | 5.41e-16 | 75.5 |
| MS.gene20167.t1 | MTR_1g083180 | 51.562 | 64 | 26 | 3 | 107 | 166 | 63 | 125 | 1.46e-12 | 65.1 |
| MS.gene20167.t1 | MTR_5g075760 | 63.830 | 47 | 16 | 1 | 107 | 153 | 107 | 152 | 1.20e-11 | 63.2 |
| MS.gene20167.t1 | MTR_5g075790 | 61.702 | 47 | 17 | 1 | 107 | 153 | 115 | 160 | 3.96e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20167.t1 | AT5G56840 | 54.891 | 184 | 51 | 5 | 1 | 174 | 1 | 162 | 6.21e-53 | 172 |
| MS.gene20167.t1 | AT5G61620 | 47.904 | 167 | 81 | 3 | 4 | 168 | 10 | 172 | 1.41e-44 | 153 |
| MS.gene20167.t1 | AT5G47390 | 43.062 | 209 | 96 | 5 | 4 | 208 | 3 | 192 | 1.07e-43 | 152 |
| MS.gene20167.t1 | AT1G70000 | 47.514 | 181 | 60 | 6 | 4 | 169 | 3 | 163 | 5.64e-40 | 140 |
| MS.gene20167.t1 | AT1G70000 | 47.514 | 181 | 60 | 6 | 4 | 169 | 3 | 163 | 5.64e-40 | 140 |
| MS.gene20167.t1 | AT3G16350 | 44.286 | 210 | 63 | 7 | 4 | 169 | 3 | 202 | 2.97e-36 | 133 |
| MS.gene20167.t1 | AT1G49010 | 69.737 | 76 | 22 | 1 | 99 | 173 | 128 | 203 | 1.26e-32 | 122 |
| MS.gene20167.t1 | AT5G08520 | 63.855 | 83 | 27 | 2 | 99 | 178 | 112 | 194 | 1.67e-31 | 119 |
| MS.gene20167.t1 | AT5G01200 | 68.293 | 82 | 23 | 2 | 90 | 168 | 129 | 210 | 4.91e-31 | 116 |
| MS.gene20167.t1 | AT2G38090 | 73.239 | 71 | 18 | 1 | 99 | 168 | 135 | 205 | 5.30e-30 | 114 |
| MS.gene20167.t1 | AT5G58900 | 69.863 | 73 | 21 | 1 | 97 | 168 | 133 | 205 | 1.85e-29 | 113 |
| MS.gene20167.t1 | AT3G11280 | 54.128 | 109 | 43 | 3 | 96 | 199 | 118 | 224 | 2.62e-28 | 109 |
| MS.gene20167.t1 | AT3G11280 | 54.128 | 109 | 43 | 3 | 96 | 199 | 118 | 224 | 2.62e-28 | 109 |
| MS.gene20167.t1 | AT5G04760 | 65.714 | 70 | 23 | 1 | 100 | 168 | 94 | 163 | 4.35e-27 | 105 |
| MS.gene20167.t1 | AT5G05790 | 67.568 | 74 | 23 | 1 | 96 | 168 | 122 | 195 | 4.97e-27 | 106 |
| MS.gene20167.t1 | AT5G05790 | 67.568 | 74 | 23 | 1 | 96 | 168 | 122 | 195 | 4.97e-27 | 106 |
| MS.gene20167.t1 | AT1G19000 | 80.392 | 51 | 10 | 0 | 101 | 151 | 98 | 148 | 2.33e-25 | 102 |
| MS.gene20167.t1 | AT1G19000 | 80.392 | 51 | 10 | 0 | 101 | 151 | 98 | 148 | 2.33e-25 | 102 |
| MS.gene20167.t1 | AT1G74840 | 76.923 | 52 | 12 | 0 | 100 | 151 | 91 | 142 | 1.73e-24 | 98.6 |
| MS.gene20167.t1 | AT1G74840 | 76.923 | 52 | 12 | 0 | 100 | 151 | 91 | 142 | 2.51e-24 | 99.0 |
| MS.gene20167.t1 | AT3G10580 | 61.765 | 68 | 25 | 1 | 101 | 168 | 91 | 157 | 1.95e-21 | 90.9 |
| MS.gene20167.t1 | AT3G10580 | 61.765 | 68 | 25 | 1 | 101 | 168 | 91 | 157 | 2.81e-21 | 91.3 |
| MS.gene20167.t1 | AT5G23650 | 56.579 | 76 | 32 | 1 | 99 | 173 | 114 | 189 | 2.82e-21 | 92.0 |
| MS.gene20167.t1 | AT4G09450 | 67.925 | 53 | 17 | 0 | 101 | 153 | 87 | 139 | 6.55e-18 | 80.1 |
| MS.gene20167.t1 | AT3G10590 | 54.930 | 71 | 28 | 3 | 101 | 168 | 105 | 174 | 1.45e-14 | 71.2 |
Find 63 sgRNAs with CRISPR-Local
Find 100 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTAATTAAGTGACGCTAAT+TGG | 0.117960 | 4.4:-3903128 | None:intergenic |
| CCTGCTGGCTCATTCCTTCT+TGG | 0.142813 | 4.4:+3903104 | MS.gene20167:CDS |
| TGCTAATTCAGTAGTAAATT+TGG | 0.198359 | 4.4:+3902863 | MS.gene20167:CDS |
| TTGGAGGACTTCGTCTCTTC+GGG | 0.227891 | 4.4:+3901608 | MS.gene20167:CDS |
| TTGTGCAGCAGTGCCTAATT+TGG | 0.253498 | 4.4:+3903031 | MS.gene20167:CDS |
| TATACCTTTCTTTCTCTCTT+GGG | 0.282804 | 4.4:-3901827 | None:intergenic |
| ATATACCTTTCTTTCTCTCT+TGG | 0.345963 | 4.4:-3901828 | None:intergenic |
| CTTGGAGGACTTCGTCTCTT+CGG | 0.346467 | 4.4:+3901607 | MS.gene20167:CDS |
| GAAAGTGTGAGGTCCAAATT+AGG | 0.360682 | 4.4:-3903044 | None:intergenic |
| TTAATTAAGTGACGCTAATT+GGG | 0.384534 | 4.4:-3903127 | None:intergenic |
| CTGTGCTCTTCTTCTGTCCA+TGG | 0.393875 | 4.4:-3902343 | None:intergenic |
| GCTAATTCAGTAGTAAATTT+GGG | 0.397356 | 4.4:+3902864 | MS.gene20167:CDS |
| GAGCACAGAACATTCCTTGT+TGG | 0.426067 | 4.4:+3902358 | MS.gene20167:CDS |
| TGTTCGCATTGTGGTAAGAT+AGG | 0.440998 | 4.4:+3901550 | MS.gene20167:CDS |
| AATGAGGAAGATGGAGAGGA+TGG | 0.441387 | 4.4:-3901709 | None:intergenic |
| CATGGCTAGCGACTTGTGTA+GGG | 0.443009 | 4.4:-3902444 | None:intergenic |
| GCATGGCTAGCGACTTGTGT+AGG | 0.465972 | 4.4:-3902445 | None:intergenic |
| ATACCTTTCTTTCTCTCTTG+GGG | 0.468820 | 4.4:-3901826 | None:intergenic |
| CCAAGAAGGAATGAGCCAGC+AGG | 0.469903 | 4.4:-3903104 | None:intergenic |
| ATGAGGAGGAAGATGATAGT+TGG | 0.475244 | 4.4:-3901633 | None:intergenic |
| CAAAATCAACCCTCCCCTGC+TGG | 0.476253 | 4.4:+3903089 | MS.gene20167:CDS |
| GGATTAGAGAAGCTAGGAAA+AGG | 0.476740 | 4.4:+3902379 | MS.gene20167:CDS |
| TGCACATCCTTCACTACCCT+TGG | 0.478767 | 4.4:+3901589 | MS.gene20167:CDS |
| ATAATTACTCTACAGATAGT+TGG | 0.480375 | 4.4:+3902991 | MS.gene20167:CDS |
| AGAAGCTAGGAAAAGGAGAC+TGG | 0.482282 | 4.4:+3902386 | MS.gene20167:CDS |
| CCTTTCTTTCTCTCTTGGGG+TGG | 0.484527 | 4.4:-3901823 | None:intergenic |
| TGGAGAGGATGGTGAGGGAA+AGG | 0.486578 | 4.4:-3901698 | None:intergenic |
| CAAGAAGGAATGAGCCAGCA+GGG | 0.487978 | 4.4:-3903103 | None:intergenic |
| TGCTTCTTCTTGTTTAAAGT+AGG | 0.502048 | 4.4:-3902946 | None:intergenic |
| GTAAGATAGGACATAATTGT+AGG | 0.502669 | 4.4:+3901563 | MS.gene20167:CDS |
| CCACCCCAAGAGAGAAAGAA+AGG | 0.504684 | 4.4:+3901823 | MS.gene20167:CDS |
| AGAGAATGAGGAAGATGGAG+AGG | 0.510998 | 4.4:-3901713 | None:intergenic |
| AAGGAATGAGCCAGCAGGGG+AGG | 0.519594 | 4.4:-3903099 | None:intergenic |
| GATGAAGAGAATGAGGAAGA+TGG | 0.523435 | 4.4:-3901718 | None:intergenic |
| AAATTTGGGTCATAAATTTG+AGG | 0.527043 | 4.4:+3902878 | MS.gene20167:CDS |
| CTTGTTGGATTAGAGAAGCT+AGG | 0.528666 | 4.4:+3902373 | MS.gene20167:CDS |
| TTGATTGATCAGGAGTTCCA+TGG | 0.532260 | 4.4:+3902326 | MS.gene20167:intron |
| ACATCCTTCACTACCCTTGG+AGG | 0.544075 | 4.4:+3901592 | MS.gene20167:CDS |
| TGACGCTAATTGGGCCAAGA+AGG | 0.545277 | 4.4:-3903118 | None:intergenic |
| AGGAATGAGCCAGCAGGGGA+GGG | 0.549931 | 4.4:-3903098 | None:intergenic |
| GGAAGATGGAGAGGATGGTG+AGG | 0.553718 | 4.4:-3901704 | None:intergenic |
| AGATATGAAATATTAGAAGT+GGG | 0.561423 | 4.4:-3901781 | None:intergenic |
| GATCAAGAAAAGCTTTAGCA+TGG | 0.562627 | 4.4:+3901672 | MS.gene20167:CDS |
| TAGATATGAAATATTAGAAG+TGG | 0.562815 | 4.4:-3901782 | None:intergenic |
| GAAGATGGAGAGGATGGTGA+GGG | 0.564987 | 4.4:-3901703 | None:intergenic |
| ACGTTCAAGTCTCTTTGACT+TGG | 0.572684 | 4.4:+3902510 | MS.gene20167:CDS |
| CGAAGAGACGAAGTCCTCCA+AGG | 0.582973 | 4.4:-3901606 | None:intergenic |
| AACACCAACACAAAAGAACA+AGG | 0.589703 | 4.4:+3902837 | MS.gene20167:CDS |
| TGATGTTGATGAAGAGAATG+AGG | 0.596418 | 4.4:-3901725 | None:intergenic |
| CTAGCTTCTCTAATCCAACA+AGG | 0.600496 | 4.4:-3902372 | None:intergenic |
| AGAAGAAAGTGTTCGCATTG+TGG | 0.603130 | 4.4:+3901541 | MS.gene20167:CDS |
| AAGTCCTCCAAGGGTAGTGA+AGG | 0.604978 | 4.4:-3901596 | None:intergenic |
| TTGTTTAAAGTAGGACAAAG+TGG | 0.607562 | 4.4:-3902937 | None:intergenic |
| TGTGAAGTTGAGATGAATGA+TGG | 0.607811 | 4.4:+3902912 | MS.gene20167:CDS |
| AAGAAGGAATGAGCCAGCAG+GGG | 0.613479 | 4.4:-3903102 | None:intergenic |
| TGGAGGACTTCGTCTCTTCG+GGG | 0.623972 | 4.4:+3901609 | MS.gene20167:CDS |
| GGTACTAGATGATGATGAGG+AGG | 0.625545 | 4.4:-3901647 | None:intergenic |
| CATGGTACTAGATGATGATG+AGG | 0.639951 | 4.4:-3901650 | None:intergenic |
| GAAGAGACGAAGTCCTCCAA+GGG | 0.651358 | 4.4:-3901605 | None:intergenic |
| ATGGCTAGCGACTTGTGTAG+GGG | 0.659705 | 4.4:-3902443 | None:intergenic |
| CTAGGAAAAGGAGACTGGAG+AGG | 0.661686 | 4.4:+3902391 | MS.gene20167:CDS |
| GGGATGCAACTGAAAGTGTG+AGG | 0.693635 | 4.4:-3903055 | None:intergenic |
| ACACCAACACAAAAGAACAA+GGG | 0.712802 | 4.4:+3902838 | MS.gene20167:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAATAAAATATTTATTT+AGG | - | chr4.4:3902751-3902770 | None:intergenic | 0.0% |
| !!! | TTTTATTATTTTTATTTTTA+TGG | + | chr4.4:3902760-3902779 | MS.gene20167:intron | 0.0% |
| !! | AAATAAAAAAAAGTTAAAAG+AGG | - | chr4.4:3902706-3902725 | None:intergenic | 10.0% |
| !! | ATAAATAAAAAAACAAATGA+AGG | - | chr4.4:3902068-3902087 | None:intergenic | 10.0% |
| !!! | ATAATAATTTTCATCAATAT+TGG | - | chr4.4:3901755-3901774 | None:intergenic | 10.0% |
| !! | ATATTATTAATTCAATGACA+AGG | - | chr4.4:3902788-3902807 | None:intergenic | 15.0% |
| !! | TATATTTATACATATGTTAG+CGG | + | chr4.4:3901846-3901865 | MS.gene20167:intron | 15.0% |
| !! | TCTTATATTCCTTTATATAT+TGG | + | chr4.4:3902155-3902174 | MS.gene20167:intron | 15.0% |
| !!! | ATAATTTTTATTTGTGGTTA+TGG | - | chr4.4:3902656-3902675 | None:intergenic | 15.0% |
| !!! | TAATTTTTATTTGTGGTTAT+GGG | - | chr4.4:3902655-3902674 | None:intergenic | 15.0% |
| !!! | TATAAAGGAATATAAGATTT+TGG | - | chr4.4:3902152-3902171 | None:intergenic | 15.0% |
| !! | AATATAAAGTAAGTCTTACA+TGG | + | chr4.4:3902622-3902641 | MS.gene20167:intron | 20.0% |
| !! | AGATATGAAATATTAGAAGT+GGG | - | chr4.4:3901784-3901803 | None:intergenic | 20.0% |
| !! | TAGATATGAAATATTAGAAG+TGG | - | chr4.4:3901785-3901804 | None:intergenic | 20.0% |
| !! | TATTCCTTTATATATTGGTA+TGG | + | chr4.4:3902160-3902179 | MS.gene20167:intron | 20.0% |
| !! | TCAAAAATACTTTCTTAGAT+TGG | + | chr4.4:3902468-3902487 | MS.gene20167:CDS | 20.0% |
| !! | TCTTTCAATTCTATTCTTAT+TGG | - | chr4.4:3902118-3902137 | None:intergenic | 20.0% |
| !!! | TATCTATCAGATTGTTTTAT+AGG | + | chr4.4:3901799-3901818 | MS.gene20167:CDS | 20.0% |
| ! | AAATTTGGGTCATAAATTTG+AGG | + | chr4.4:3902878-3902897 | MS.gene20167:CDS | 25.0% |
| ! | AAGACTTACTTTATATTCAG+TGG | - | chr4.4:3902619-3902638 | None:intergenic | 25.0% |
| ! | ACATCCATACCAATATATAA+AGG | - | chr4.4:3902167-3902186 | None:intergenic | 25.0% |
| ! | ATAATTACTCTACAGATAGT+TGG | + | chr4.4:3902991-3903010 | MS.gene20167:CDS | 25.0% |
| ! | ATACTTCTAATTTGAGCTAA+GGG | + | chr4.4:3902225-3902244 | MS.gene20167:intron | 25.0% |
| ! | ATGATGAATGAGAAAATACT+TGG | + | chr4.4:3902272-3902291 | MS.gene20167:intron | 25.0% |
| ! | GCTAATTCAGTAGTAAATTT+GGG | + | chr4.4:3902864-3902883 | MS.gene20167:CDS | 25.0% |
| ! | TATACTTCTAATTTGAGCTA+AGG | + | chr4.4:3902224-3902243 | MS.gene20167:intron | 25.0% |
| ! | TGATGAATGAGAAAATACTT+GGG | + | chr4.4:3902273-3902292 | MS.gene20167:intron | 25.0% |
| ! | TGCTAATTCAGTAGTAAATT+TGG | + | chr4.4:3902863-3902882 | MS.gene20167:CDS | 25.0% |
| !! | TATATACTGATTGATTGATC+AGG | + | chr4.4:3902316-3902335 | MS.gene20167:intron | 25.0% |
| !!! | ATTTTCTTGCTTTTCTGATT+TGG | - | chr4.4:3902973-3902992 | None:intergenic | 25.0% |
| !!! | TAAGAAAGTATTTTTGAGCA+TGG | - | chr4.4:3902465-3902484 | None:intergenic | 25.0% |
| AATATGATATATTTGGCTGC+AGG | + | chr4.4:3902803-3902822 | MS.gene20167:intron | 30.0% | |
| ATATACCTTTCTTTCTCTCT+TGG | - | chr4.4:3901831-3901850 | None:intergenic | 30.0% | |
| GTAAGATAGGACATAATTGT+AGG | + | chr4.4:3901563-3901582 | MS.gene20167:CDS | 30.0% | |
| TATACCTTTCTTTCTCTCTT+GGG | - | chr4.4:3901830-3901849 | None:intergenic | 30.0% | |
| ! | TGCTTCTTCTTGTTTAAAGT+AGG | - | chr4.4:3902949-3902968 | None:intergenic | 30.0% |
| ! | TTGATTTTGTTCAAGCTTAG+GGG | - | chr4.4:3903078-3903097 | None:intergenic | 30.0% |
| ! | TTGTTTAAAGTAGGACAAAG+TGG | - | chr4.4:3902940-3902959 | None:intergenic | 30.0% |
| !! | GTTGATTTTGTTCAAGCTTA+GGG | - | chr4.4:3903079-3903098 | None:intergenic | 30.0% |
| AAACAAATGAAGGAAGCTGT+TGG | - | chr4.4:3902058-3902077 | None:intergenic | 35.0% | |
| AACACCAACACAAAAGAACA+AGG | + | chr4.4:3902837-3902856 | MS.gene20167:CDS | 35.0% | |
| ACACCAACACAAAAGAACAA+GGG | + | chr4.4:3902838-3902857 | MS.gene20167:CDS | 35.0% | |
| ATACCTTTCTTTCTCTCTTG+GGG | - | chr4.4:3901829-3901848 | None:intergenic | 35.0% | |
| ATTTGAGCTAAGGGAGTTAA+TGG | + | chr4.4:3902234-3902253 | MS.gene20167:intron | 35.0% | |
| TACATATGTTAGCGGAAAGA+TGG | + | chr4.4:3901854-3901873 | MS.gene20167:intron | 35.0% | |
| TGTGAAGTTGAGATGAATGA+TGG | + | chr4.4:3902912-3902931 | MS.gene20167:CDS | 35.0% | |
| ! | ATACCCTTGTTCTTTTGTGT+TGG | - | chr4.4:3902844-3902863 | None:intergenic | 35.0% |
| ! | GATCAAGAAAAGCTTTAGCA+TGG | + | chr4.4:3901672-3901691 | MS.gene20167:CDS | 35.0% |
| ! | GCTAAAGCTTTTCTTGATCA+TGG | - | chr4.4:3901671-3901690 | None:intergenic | 35.0% |
| ! | TGATGTTGATGAAGAGAATG+AGG | - | chr4.4:3901728-3901747 | None:intergenic | 35.0% |
| !! | GGTTGATTTTGTTCAAGCTT+AGG | - | chr4.4:3903080-3903099 | None:intergenic | 35.0% |
| ACGTTCAAGTCTCTTTGACT+TGG | + | chr4.4:3902510-3902529 | MS.gene20167:CDS | 40.0% | |
| ATGAGGAGGAAGATGATAGT+TGG | - | chr4.4:3901636-3901655 | None:intergenic | 40.0% | |
| CTAGCTTCTCTAATCCAACA+AGG | - | chr4.4:3902375-3902394 | None:intergenic | 40.0% | |
| GATATATTTGGCTGCAGGTT+GGG | + | chr4.4:3902808-3902827 | MS.gene20167:intron | 40.0% | |
| GATGAAGAGAATGAGGAAGA+TGG | - | chr4.4:3901721-3901740 | None:intergenic | 40.0% | |
| GGATTAGAGAAGCTAGGAAA+AGG | + | chr4.4:3902379-3902398 | MS.gene20167:CDS | 40.0% | |
| TATTTGTGGTTATGGGCTTG+TGG | - | chr4.4:3902648-3902667 | None:intergenic | 40.0% | |
| TGATATATTTGGCTGCAGGT+TGG | + | chr4.4:3902807-3902826 | MS.gene20167:intron | 40.0% | |
| TGTTCGCATTGTGGTAAGAT+AGG | + | chr4.4:3901550-3901569 | MS.gene20167:CDS | 40.0% | |
| TTGATTGATCAGGAGTTCCA+TGG | + | chr4.4:3902326-3902345 | MS.gene20167:intron | 40.0% | |
| ! | CATGGTACTAGATGATGATG+AGG | - | chr4.4:3901653-3901672 | None:intergenic | 40.0% |
| ! | CTTGTTGGATTAGAGAAGCT+AGG | + | chr4.4:3902373-3902392 | MS.gene20167:CDS | 40.0% |
| ! | GAAAGTGTGAGGTCCAAATT+AGG | - | chr4.4:3903047-3903066 | None:intergenic | 40.0% |
| !! | AGAAGAAAGTGTTCGCATTG+TGG | + | chr4.4:3901541-3901560 | MS.gene20167:CDS | 40.0% |
| AATGAGGAAGATGGAGAGGA+TGG | - | chr4.4:3901712-3901731 | None:intergenic | 45.0% | |
| AGAAGCTAGGAAAAGGAGAC+TGG | + | chr4.4:3902386-3902405 | MS.gene20167:CDS | 45.0% | |
| AGAGAATGAGGAAGATGGAG+AGG | - | chr4.4:3901716-3901735 | None:intergenic | 45.0% | |
| GAGCACAGAACATTCCTTGT+TGG | + | chr4.4:3902358-3902377 | MS.gene20167:CDS | 45.0% | |
| TTGTGCAGCAGTGCCTAATT+TGG | + | chr4.4:3903031-3903050 | MS.gene20167:CDS | 45.0% | |
| ! | GGTACTAGATGATGATGAGG+AGG | - | chr4.4:3901650-3901669 | None:intergenic | 45.0% |
| !! | AATTAATAATATGATATATT+TGG | + | chr4.4:3902796-3902815 | MS.gene20167:intron | 5.0% |
| !!! | AATTAAATAATTTTTATTTG+TGG | - | chr4.4:3902662-3902681 | None:intergenic | 5.0% |
| AAGAAGGAATGAGCCAGCAG+GGG | - | chr4.4:3903105-3903124 | None:intergenic | 50.0% | |
| AAGTCCTCCAAGGGTAGTGA+AGG | - | chr4.4:3901599-3901618 | None:intergenic | 50.0% | |
| ACATCCTTCACTACCCTTGG+AGG | + | chr4.4:3901592-3901611 | MS.gene20167:CDS | 50.0% | |
| ATGGCTAGCGACTTGTGTAG+GGG | - | chr4.4:3902446-3902465 | None:intergenic | 50.0% | |
| CAAGAAGGAATGAGCCAGCA+GGG | - | chr4.4:3903106-3903125 | None:intergenic | 50.0% | |
| CATGGCTAGCGACTTGTGTA+GGG | - | chr4.4:3902447-3902466 | None:intergenic | 50.0% | |
| CCACCCCAAGAGAGAAAGAA+AGG | + | chr4.4:3901823-3901842 | MS.gene20167:CDS | 50.0% | |
| CCTTTCTTTCTCTCTTGGGG+TGG | - | chr4.4:3901826-3901845 | None:intergenic | 50.0% | |
| CTAGGAAAAGGAGACTGGAG+AGG | + | chr4.4:3902391-3902410 | MS.gene20167:CDS | 50.0% | |
| CTGTGCTCTTCTTCTGTCCA+TGG | - | chr4.4:3902346-3902365 | None:intergenic | 50.0% | |
| CTTGGAGGACTTCGTCTCTT+CGG | + | chr4.4:3901607-3901626 | MS.gene20167:CDS | 50.0% | |
| GAAGAGACGAAGTCCTCCAA+GGG | - | chr4.4:3901608-3901627 | None:intergenic | 50.0% | |
| GAAGATGGAGAGGATGGTGA+GGG | - | chr4.4:3901706-3901725 | None:intergenic | 50.0% | |
| TGACGCTAATTGGGCCAAGA+AGG | - | chr4.4:3903121-3903140 | None:intergenic | 50.0% | |
| TGCACATCCTTCACTACCCT+TGG | + | chr4.4:3901589-3901608 | MS.gene20167:CDS | 50.0% | |
| TTGGAGGACTTCGTCTCTTC+GGG | + | chr4.4:3901608-3901627 | MS.gene20167:CDS | 50.0% | |
| ! | GGGATGCAACTGAAAGTGTG+AGG | - | chr4.4:3903058-3903077 | None:intergenic | 50.0% |
| CAAAATCAACCCTCCCCTGC+TGG | + | chr4.4:3903089-3903108 | MS.gene20167:CDS | 55.0% | |
| CCAAGAAGGAATGAGCCAGC+AGG | - | chr4.4:3903107-3903126 | None:intergenic | 55.0% | |
| CGAAGAGACGAAGTCCTCCA+AGG | - | chr4.4:3901609-3901628 | None:intergenic | 55.0% | |
| GCATGGCTAGCGACTTGTGT+AGG | - | chr4.4:3902448-3902467 | None:intergenic | 55.0% | |
| GGAAGATGGAGAGGATGGTG+AGG | - | chr4.4:3901707-3901726 | None:intergenic | 55.0% | |
| TGGAGAGGATGGTGAGGGAA+AGG | - | chr4.4:3901701-3901720 | None:intergenic | 55.0% | |
| TGGAGGACTTCGTCTCTTCG+GGG | + | chr4.4:3901609-3901628 | MS.gene20167:CDS | 55.0% | |
| !! | CCTGCTGGCTCATTCCTTCT+TGG | + | chr4.4:3903104-3903123 | MS.gene20167:CDS | 55.0% |
| AAGGAATGAGCCAGCAGGGG+AGG | - | chr4.4:3903102-3903121 | None:intergenic | 60.0% | |
| AGGAATGAGCCAGCAGGGGA+GGG | - | chr4.4:3903101-3903120 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 3901535 | 3903145 | 3901535 | ID=MS.gene20167 |
| chr4.4 | mRNA | 3901535 | 3903145 | 3901535 | ID=MS.gene20167.t1;Parent=MS.gene20167 |
| chr4.4 | exon | 3901535 | 3901844 | 3901535 | ID=MS.gene20167.t1.exon1;Parent=MS.gene20167.t1 |
| chr4.4 | CDS | 3901535 | 3901844 | 3901535 | ID=cds.MS.gene20167.t1;Parent=MS.gene20167.t1 |
| chr4.4 | exon | 3902338 | 3902531 | 3902338 | ID=MS.gene20167.t1.exon2;Parent=MS.gene20167.t1 |
| chr4.4 | CDS | 3902338 | 3902531 | 3902338 | ID=cds.MS.gene20167.t1;Parent=MS.gene20167.t1 |
| chr4.4 | exon | 3902825 | 3903145 | 3902825 | ID=MS.gene20167.t1.exon3;Parent=MS.gene20167.t1 |
| chr4.4 | CDS | 3902825 | 3903145 | 3902825 | ID=cds.MS.gene20167.t1;Parent=MS.gene20167.t1 |
| Gene Sequence |
| Protein sequence |
