Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20178.t1 | XP_024629584.1 | 98.3 | 1119 | 18 | 1 | 1 | 1119 | 1 | 1118 | 0.00E+00 | 2020.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20178.t1 | F4JRF5 | 46.3 | 1150 | 481 | 20 | 3 | 1111 | 62 | 1116 | 1.6e-251 | 870.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20178.t1 | A0A396GXJ1 | 98.3 | 1119 | 18 | 1 | 1 | 1119 | 1 | 1118 | 0.0e+00 | 2020.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene20178.t1 | TR | DDT |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20178.t1 | MTR_4g078860 | 25.822 | 1034 | 546 | 26 | 299 | 1122 | 459 | 1481 | 3.18e-68 | 253 |
| MS.gene20178.t1 | MTR_4g078860 | 25.822 | 1034 | 546 | 26 | 299 | 1122 | 485 | 1507 | 5.76e-68 | 252 |
| MS.gene20178.t1 | MTR_4g078860 | 25.803 | 1027 | 543 | 25 | 299 | 1117 | 485 | 1500 | 6.32e-68 | 251 |
| MS.gene20178.t1 | MTR_4g078860 | 25.683 | 915 | 479 | 23 | 299 | 1021 | 485 | 1390 | 9.73e-58 | 219 |
| MS.gene20178.t1 | MTR_2g014490 | 26.910 | 576 | 321 | 19 | 636 | 1121 | 955 | 1520 | 1.05e-41 | 168 |
| MS.gene20178.t1 | MTR_2g014490 | 32.370 | 346 | 192 | 6 | 278 | 582 | 487 | 831 | 4.78e-41 | 166 |
| MS.gene20178.t1 | MTR_2g014490 | 27.125 | 553 | 304 | 18 | 636 | 1099 | 967 | 1509 | 5.50e-41 | 166 |
| MS.gene20178.t1 | MTR_2g014490 | 31.564 | 358 | 191 | 7 | 278 | 582 | 487 | 843 | 3.34e-39 | 160 |
| MS.gene20178.t1 | MTR_4g088375 | 33.028 | 327 | 173 | 6 | 299 | 582 | 420 | 743 | 4.83e-39 | 159 |
| MS.gene20178.t1 | MTR_4g088375 | 30.295 | 373 | 218 | 11 | 759 | 1102 | 1043 | 1402 | 6.31e-35 | 145 |
| MS.gene20178.t1 | MTR_4g088375 | 33.028 | 327 | 173 | 6 | 299 | 582 | 420 | 743 | 4.91e-39 | 159 |
| MS.gene20178.t1 | MTR_4g088375 | 30.295 | 373 | 218 | 11 | 759 | 1102 | 1043 | 1402 | 6.59e-35 | 145 |
| MS.gene20178.t1 | MTR_4g088375 | 33.028 | 327 | 173 | 6 | 299 | 582 | 201 | 524 | 5.21e-39 | 159 |
| MS.gene20178.t1 | MTR_4g088375 | 30.295 | 373 | 218 | 11 | 759 | 1102 | 824 | 1183 | 8.20e-35 | 145 |
| MS.gene20178.t1 | MTR_4g088375 | 33.028 | 327 | 173 | 6 | 299 | 582 | 454 | 777 | 5.38e-39 | 159 |
| MS.gene20178.t1 | MTR_4g088375 | 30.295 | 373 | 218 | 11 | 759 | 1102 | 1077 | 1436 | 7.51e-35 | 145 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20178.t1 | AT4G12750 | 53.003 | 949 | 410 | 14 | 179 | 1111 | 174 | 1102 | 0.0 | 883 |
| MS.gene20178.t1 | AT5G44180 | 25.000 | 1028 | 562 | 28 | 254 | 1098 | 403 | 1404 | 1.47e-57 | 219 |
| MS.gene20178.t1 | AT5G44180 | 25.000 | 1028 | 562 | 28 | 254 | 1098 | 403 | 1404 | 1.47e-57 | 219 |
| MS.gene20178.t1 | AT5G44180 | 29.104 | 536 | 273 | 13 | 254 | 682 | 403 | 938 | 5.18e-46 | 182 |
| MS.gene20178.t1 | AT1G28420 | 31.921 | 354 | 192 | 7 | 270 | 582 | 465 | 810 | 1.30e-40 | 164 |
| MS.gene20178.t1 | AT1G28420 | 25.704 | 533 | 295 | 15 | 637 | 1098 | 927 | 1429 | 1.55e-29 | 128 |
Find 282 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATCTCAATGTTGTAAAATA+TGG | 0.202993 | 4.4:-4047316 | MS.gene20178:CDS |
| ACTGGTGAAGAAATTATTTA+AGG | 0.222533 | 4.4:-4052384 | MS.gene20178:intron |
| ATTCTCAAAGTTCCATATTC+AGG | 0.230563 | 4.4:-4048078 | MS.gene20178:CDS |
| AATAATTTCTTCACCAGTTC+CGG | 0.234217 | 4.4:+4052389 | None:intergenic |
| AAGAATATGATTCTTGGATT+TGG | 0.235976 | 4.4:-4047354 | MS.gene20178:CDS |
| TGTAGCAGCGGAGATGATTT+TGG | 0.243573 | 4.4:-4048645 | MS.gene20178:CDS |
| CAATAGATATTGGCTCTTCT+TGG | 0.244534 | 4.4:-4047976 | MS.gene20178:CDS |
| CCAAGGATGCCTCCTGAATA+TGG | 0.244836 | 4.4:+4048066 | None:intergenic |
| TTGCTCCAGAACCACGTAAT+TGG | 0.252545 | 4.4:+4048195 | None:intergenic |
| CACCCTTGATGAGTTTGTTC+AGG | 0.254312 | 4.4:-4050998 | MS.gene20178:CDS |
| GGCTCTTCTTATTGAATCTT+TGG | 0.257861 | 4.4:-4047623 | MS.gene20178:CDS |
| AGGATTAAGGTTAGCAATAT+TGG | 0.270918 | 4.4:-4047565 | MS.gene20178:CDS |
| GGTGCTTTCATATTACTATT+AGG | 0.271835 | 4.4:+4053316 | None:intergenic |
| CTTCATCTGCCCTTGCTCTA+TGG | 0.275915 | 4.4:-4045986 | MS.gene20178:CDS |
| TGCCATAATTGCTCCTTATC+TGG | 0.277154 | 4.4:-4045949 | MS.gene20178:CDS |
| CAGATCTATGTCCAGGATTA+AGG | 0.279095 | 4.4:-4047578 | MS.gene20178:CDS |
| AAGAGGAACAACTGCGTAAA+TGG | 0.286345 | 4.4:-4047387 | MS.gene20178:CDS |
| GGTGCTTTCATATTACAATT+AGG | 0.290699 | 4.4:+4053379 | None:intergenic |
| GTGTGCTTTGTTGTCAGTTC+TGG | 0.293615 | 4.4:-4047665 | MS.gene20178:CDS |
| TTCTTCATCTTGACAGCACC+TGG | 0.298444 | 4.4:+4052443 | None:intergenic |
| AACATTGAGATCTAAATAAA+AGG | 0.299289 | 4.4:+4047327 | None:intergenic |
| GAATTTGATTCTCTTCCTTC+AGG | 0.300207 | 4.4:-4054994 | MS.gene20178:intron |
| GGTGCTTTGATCTTACAATT+AGG | 0.301301 | 4.4:+4053442 | None:intergenic |
| GAGCAAGGGCAGATGAAGTA+TGG | 0.305207 | 4.4:+4045991 | None:intergenic |
| TGTAATGTAGCTTTCTTATT+CGG | 0.311170 | 4.4:+4052989 | None:intergenic |
| GTGTTCAAGAATATGATTCT+TGG | 0.311627 | 4.4:-4047360 | MS.gene20178:CDS |
| TTGGATATTCTTGTAAACTA+TGG | 0.315501 | 4.4:-4049048 | MS.gene20178:CDS |
| GAAAAGGTCTAATGACAATT+TGG | 0.318367 | 4.4:-4053273 | MS.gene20178:CDS |
| AGTATCCAATTACGTGGTTC+TGG | 0.329237 | 4.4:-4048200 | MS.gene20178:CDS |
| TTCCCTGTGACTTCTGAGTT+TGG | 0.334695 | 4.4:+4045919 | None:intergenic |
| GTCCAGATAAGGAGCAATTA+TGG | 0.335431 | 4.4:+4045947 | None:intergenic |
| AGAGACCTTCCAATCAGTTT+TGG | 0.337761 | 4.4:-4053229 | MS.gene20178:CDS |
| AGTGTGGTTGTTAGGACTTA+TGG | 0.344657 | 4.4:-4048511 | MS.gene20178:CDS |
| AATGCATTGGCAGCGTTAAC+TGG | 0.345838 | 4.4:-4048450 | MS.gene20178:CDS |
| TTAACTGGTCTTCTTTCATC+TGG | 0.353730 | 4.4:-4048435 | MS.gene20178:CDS |
| ATGCATTGCAGTTGTTCAAT+TGG | 0.361721 | 4.4:+4048152 | None:intergenic |
| ATTGAAGTGGAGCTTTCTAA+TGG | 0.363027 | 4.4:-4050797 | MS.gene20178:CDS |
| AACTCGCACTTCAAGGTTCC+AGG | 0.363354 | 4.4:+4049018 | None:intergenic |
| TTTCAGGACTCGATGTTACT+TGG | 0.367636 | 4.4:-4050860 | MS.gene20178:intron |
| TACAATTAGGATTTGTTGCC+AGG | 0.370600 | 4.4:+4053455 | None:intergenic |
| CAGCATATGTATAGATGAAA+TGG | 0.370973 | 4.4:+4051043 | None:intergenic |
| GGAAGTCTGCTCATAATCTA+TGG | 0.379958 | 4.4:-4046267 | MS.gene20178:CDS |
| GCAGGAGAAGTGTGGTTGTT+AGG | 0.381199 | 4.4:-4048519 | MS.gene20178:CDS |
| TTACAATTCTGCTTCTCAAC+AGG | 0.382860 | 4.4:-4053662 | MS.gene20178:CDS |
| TGTGACCTGTTGACCGATAT+CGG | 0.384687 | 4.4:+4053163 | None:intergenic |
| TTTCATCTGGATCCAGCATC+AGG | 0.385104 | 4.4:-4048422 | MS.gene20178:CDS |
| TCGAAAACGTAAAAGTCTTC+AGG | 0.386293 | 4.4:-4055085 | MS.gene20178:CDS |
| ACCTATACATTTGCAACCTT+GGG | 0.391264 | 4.4:-4052420 | MS.gene20178:CDS |
| TGCATTGCAGTTGTTCAATT+GGG | 0.394043 | 4.4:+4048153 | None:intergenic |
| AAACTATACATCGGATCAAC+TGG | 0.395351 | 4.4:+4043801 | None:intergenic |
| AATAGATATTGGCTCTTCTT+GGG | 0.396568 | 4.4:-4047975 | MS.gene20178:CDS |
| GAATGATGATGCTCCTACTC+TGG | 0.397936 | 4.4:-4055022 | MS.gene20178:CDS |
| CTAGCTCATGCTTCAGAATC+CGG | 0.397988 | 4.4:-4043322 | MS.gene20178:intron |
| GATGGCAAGACTTTATGATT+TGG | 0.398381 | 4.4:+4047118 | None:intergenic |
| GTGCTGGTAGCTGCTGGATT+CGG | 0.400106 | 4.4:-4050552 | MS.gene20178:CDS |
| GAATAAGAAAGCTACATTAC+AGG | 0.400381 | 4.4:-4052987 | MS.gene20178:CDS |
| GATCTCTAAATCCTCTTACT+TGG | 0.400973 | 4.4:-4050593 | MS.gene20178:CDS |
| CTCATAATCTATGGATCAAA+AGG | 0.402900 | 4.4:-4046258 | MS.gene20178:CDS |
| AACCTATACATTTGCAACCT+TGG | 0.406843 | 4.4:-4052421 | MS.gene20178:CDS |
| AAGGTTAGCAATATTGGAAT+GGG | 0.407795 | 4.4:-4047559 | MS.gene20178:CDS |
| CTCTAGTTCCTCCGTTGTGC+TGG | 0.414272 | 4.4:+4048833 | None:intergenic |
| GCACCAACCAGGGCATCTTC+AGG | 0.414358 | 4.4:+4046295 | None:intergenic |
| TAGACGCACCTCAACTTTAG+TGG | 0.415498 | 4.4:-4046233 | MS.gene20178:CDS |
| TTGGGACTCCTCCCCGGAAC+TGG | 0.417027 | 4.4:-4052402 | MS.gene20178:CDS |
| GTTGGTTCTGAGTTGCATAC+TGG | 0.418727 | 4.4:+4052842 | None:intergenic |
| TCTTTGAAAGGCACCTTGCT+TGG | 0.419479 | 4.4:+4050527 | None:intergenic |
| CTTCAGGAATTGTATACAAC+AGG | 0.420066 | 4.4:-4055069 | MS.gene20178:CDS |
| TTTAAACAACTCGCACTTCA+AGG | 0.421705 | 4.4:+4049011 | None:intergenic |
| TAATACTAAAACACCGATAT+CGG | 0.423935 | 4.4:-4053176 | MS.gene20178:CDS |
| CCATATTCAGGAGGCATCCT+TGG | 0.424317 | 4.4:-4048066 | MS.gene20178:CDS |
| AAATAACCAGCTGTCATTGA+TGG | 0.429023 | 4.4:+4046073 | None:intergenic |
| CGTCAAGTGCTGGTAGCTGC+TGG | 0.431345 | 4.4:-4050558 | MS.gene20178:CDS |
| GGAGTTGCCATGATCTATAC+TGG | 0.432492 | 4.4:-4047258 | MS.gene20178:CDS |
| TTCTTTCTTTCAGGTAAGCA+TGG | 0.433358 | 4.4:-4044072 | MS.gene20178:intron |
| TACTTTGAATCCTCTGAAGA+TGG | 0.434264 | 4.4:-4047915 | MS.gene20178:CDS |
| ACATGGTATGGGCAAAGGTC+TGG | 0.446423 | 4.4:-4053410 | MS.gene20178:CDS |
| TTGTCAGTTCTGGATGATAG+AGG | 0.446588 | 4.4:-4047655 | MS.gene20178:CDS |
| ACAGACTATTTGCCGTCACC+TGG | 0.447449 | 4.4:-4047439 | MS.gene20178:CDS |
| TTGAAGTGGAGCTTTCTAAT+GGG | 0.448266 | 4.4:-4050796 | MS.gene20178:CDS |
| GTGAGTTTGAATTGCACTCT+TGG | 0.448587 | 4.4:+4053528 | None:intergenic |
| TCCCAAGGTTGCAAATGTAT+AGG | 0.449723 | 4.4:+4052419 | None:intergenic |
| AAGATGCCCTGGTTGGTGCT+TGG | 0.450458 | 4.4:-4046291 | MS.gene20178:CDS |
| ATCTGCCCTTGCTCTATGGT+TGG | 0.452524 | 4.4:-4045982 | MS.gene20178:CDS |
| ATAATTTCTTCACCAGTTCC+GGG | 0.454168 | 4.4:+4052390 | None:intergenic |
| CCCATACCATGTCTCTTCAC+AGG | 0.454823 | 4.4:+4053295 | None:intergenic |
| AAGCTACATTACAGGGGAAA+AGG | 0.456519 | 4.4:-4052979 | MS.gene20178:CDS |
| CTCTATGCAGATCTATGTCC+AGG | 0.456629 | 4.4:-4047585 | MS.gene20178:CDS |
| AGCTATGAAATGGTAGTTAA+CGG | 0.457614 | 4.4:-4055123 | MS.gene20178:CDS |
| AATCAAGCTCAAATGTCATA+TGG | 0.457725 | 4.4:+4047209 | None:intergenic |
| GTCTTCTTTCTCCCTGCACA+TGG | 0.460298 | 4.4:+4047153 | None:intergenic |
| AGGTTGTCTACATCAGATAC+TGG | 0.461489 | 4.4:+4047478 | None:intergenic |
| ATCGTCGGTACAATAGATAT+TGG | 0.462268 | 4.4:-4047986 | MS.gene20178:CDS |
| ACCTGTGGAGAGACATGGTA+TGG | 0.463117 | 4.4:-4053485 | MS.gene20178:CDS |
| AAACACCGATATCGGTCAAC+AGG | 0.465550 | 4.4:-4053168 | MS.gene20178:CDS |
| CAGACCAGTCTGAGCTGGAT+AGG | 0.466339 | 4.4:-4047522 | MS.gene20178:CDS |
| TTTCAGGTAAGCATGGTTCT+CGG | 0.466728 | 4.4:-4044065 | MS.gene20178:intron |
| TTGCATGACTTATTTAAATG+AGG | 0.468684 | 4.4:+4050767 | None:intergenic |
| TTTGCCGTCACCTGGGGCCG+TGG | 0.469237 | 4.4:-4047431 | MS.gene20178:CDS |
| CTTCATCTTGACAGCACCTG+GGG | 0.473722 | 4.4:+4052445 | None:intergenic |
| CTAAAGCTGATGAGAGGAAA+GGG | 0.475506 | 4.4:-4055222 | None:intergenic |
| GAAATGGTAGTTAACGGAAA+TGG | 0.475537 | 4.4:-4055117 | MS.gene20178:CDS |
| TTCATCTTCGAGCTATGAAA+TGG | 0.475741 | 4.4:-4055133 | MS.gene20178:CDS |
| GCTTACCTTCATCCTGATGC+TGG | 0.477472 | 4.4:+4048410 | None:intergenic |
| AATATTGCTAACCTTAATCC+TGG | 0.477800 | 4.4:+4047567 | None:intergenic |
| ACATGGTATGGGGAAAGGGC+TGG | 0.479635 | 4.4:-4053347 | MS.gene20178:CDS |
| AATCCTCTGAAGATGGTCAC+TGG | 0.480503 | 4.4:-4047908 | MS.gene20178:CDS |
| TAAGGTTAGCAATATTGGAA+TGG | 0.480504 | 4.4:-4047560 | MS.gene20178:CDS |
| GTTGGAGCAGCAAAAGTGAT+AGG | 0.481809 | 4.4:+4043248 | None:intergenic |
| TCTTCATCTTGACAGCACCT+GGG | 0.481996 | 4.4:+4052444 | None:intergenic |
| ACATGGTATGGGCAAAGGCC+TGG | 0.482423 | 4.4:-4053473 | MS.gene20178:CDS |
| TCAACAGAACCAAAACTGAT+TGG | 0.482815 | 4.4:+4053220 | None:intergenic |
| CTTGCTGCCAATGGAATGCT+TGG | 0.484860 | 4.4:-4052676 | MS.gene20178:CDS |
| GAAATTGATGAGAGCCATGC+AGG | 0.484983 | 4.4:-4048537 | MS.gene20178:CDS |
| ACCTGTGAAGAGACATGGTA+TGG | 0.485047 | 4.4:-4053296 | MS.gene20178:CDS |
| ACCTGTGAAGAGACATGGTA+TGG | 0.485047 | 4.4:-4053359 | MS.gene20178:CDS |
| ACCTGTGAAGAGACATGGTA+TGG | 0.485047 | 4.4:-4053422 | MS.gene20178:CDS |
| CAATCCACATAGCCATGTGC+AGG | 0.485329 | 4.4:-4047165 | MS.gene20178:CDS |
| ATCATGGCAACTCCTACATC+TGG | 0.485568 | 4.4:+4047267 | None:intergenic |
| GGGGCCGTGGTAATTGAAGC+TGG | 0.485582 | 4.4:-4047418 | MS.gene20178:CDS |
| ATCTGAACAGATAAGCAGAT+TGG | 0.486807 | 4.4:+4052702 | None:intergenic |
| CCCATACCATGTCTCTTCAC+AGG | 0.488844 | 4.4:+4053421 | None:intergenic |
| CCCATACCATGTCTCTTCAC+AGG | 0.491283 | 4.4:+4053358 | None:intergenic |
| GCTGCCAATGGAATGCTTGG+TGG | 0.493534 | 4.4:-4052673 | MS.gene20178:CDS |
| AGTATCTCAATCCAAGTAAG+AGG | 0.493928 | 4.4:+4050582 | None:intergenic |
| GTTCCTCCGTTGTGCTGGAA+AGG | 0.494796 | 4.4:+4048838 | None:intergenic |
| GTAAACTATGGCCTATGCCC+TGG | 0.495245 | 4.4:-4049036 | MS.gene20178:CDS |
| AAGAGACATGGTATGGGAAA+AGG | 0.496025 | 4.4:-4053289 | MS.gene20178:CDS |
| AATAACAATGAGGAATCTAC+TGG | 0.500216 | 4.4:+4048098 | None:intergenic |
| TTGTTTGAAGTACCTTGCCA+AGG | 0.500660 | 4.4:+4050499 | None:intergenic |
| GTTTCTTCAACTACACCGTC+AGG | 0.502669 | 4.4:+4046038 | None:intergenic |
| GCAACCTTGGGACTCCTCCC+CGG | 0.504024 | 4.4:-4052408 | MS.gene20178:CDS |
| AAGAATACTCTGTTGATGCT+TGG | 0.504490 | 4.4:-4050620 | MS.gene20178:CDS |
| AAGTAAACCCTCCTGTGGCC+AGG | 0.505805 | 4.4:+4047933 | None:intergenic |
| CTTGGTGGCTCACTTTGTCC+AGG | 0.506367 | 4.4:-4052658 | MS.gene20178:intron |
| TTGATTCTCTTGCCAGATGT+AGG | 0.508788 | 4.4:-4047279 | MS.gene20178:CDS |
| AGATAGAAGCAGTGTGAGAA+GGG | 0.510823 | 4.4:+4050823 | None:intergenic |
| CCAGGATCATCTATATTACA+AGG | 0.511974 | 4.4:+4047951 | None:intergenic |
| ACTCAGAAGTCACAGGGAAT+CGG | 0.512375 | 4.4:-4045915 | MS.gene20178:intron |
| TCTCCCTGCACATGGCTATG+TGG | 0.514678 | 4.4:+4047161 | None:intergenic |
| CAGCAGCTACCAGCACTTGA+CGG | 0.519244 | 4.4:+4050559 | None:intergenic |
| AGTAATATCACTTGAAAGTG+TGG | 0.519490 | 4.4:+4048797 | None:intergenic |
| GCCAAGGCCCTCTCTTTGAA+AGG | 0.519811 | 4.4:+4050515 | None:intergenic |
| AAGCCTGAACAAACTCATCA+AGG | 0.520032 | 4.4:+4050995 | None:intergenic |
| AGAGACATGGTATGGGGAAA+GGG | 0.521452 | 4.4:-4053351 | MS.gene20178:CDS |
| ACTTCCTCCAAGCACCAACC+AGG | 0.522313 | 4.4:+4046284 | None:intergenic |
| TCAGATCAACTTGCTGCCAA+TGG | 0.522914 | 4.4:-4052685 | MS.gene20178:CDS |
| AAGAGACATGGTATGGGGAA+AGG | 0.524365 | 4.4:-4053352 | MS.gene20178:CDS |
| CAGATAGAAGCAGTGTGAGA+AGG | 0.525187 | 4.4:+4050822 | None:intergenic |
| GTTTAGATAACTTACATTCG+TGG | 0.525191 | 4.4:+4053129 | None:intergenic |
| CCCATACCATGTCTCTCCAC+AGG | 0.526352 | 4.4:+4053484 | None:intergenic |
| AACTCTCATTACGATGCTGT+TGG | 0.526454 | 4.4:-4043276 | MS.gene20178:CDS |
| TGAGATACTCCGTCAAGTGC+TGG | 0.529972 | 4.4:-4050568 | MS.gene20178:CDS |
| CATCTCTCCAGTATAGATCA+TGG | 0.530113 | 4.4:+4047251 | None:intergenic |
| ACATTCAGACCAGTCTGAGC+TGG | 0.531147 | 4.4:-4047527 | MS.gene20178:CDS |
| AGCAAGGGCAGATGAAGTAT+GGG | 0.532881 | 4.4:+4045992 | None:intergenic |
| TGTTATGCCTGAAGATGCCC+TGG | 0.533990 | 4.4:-4046302 | MS.gene20178:CDS |
| TTGGTGCCATCAATGACAGC+TGG | 0.537896 | 4.4:-4046079 | MS.gene20178:CDS |
| ATGCCCTGGTTGGTGCTTGG+AGG | 0.538599 | 4.4:-4046288 | MS.gene20178:CDS |
| TAACCCTATCCAGCTCAGAC+TGG | 0.539594 | 4.4:+4047518 | None:intergenic |
| GCCTTTCAAAGAGAGGGCCT+TGG | 0.540433 | 4.4:-4050516 | MS.gene20178:CDS |
| CAGAACCAAAACTGATTGGA+AGG | 0.541573 | 4.4:+4053224 | None:intergenic |
| GCTTCAATTACCACGGCCCC+AGG | 0.541939 | 4.4:+4047421 | None:intergenic |
| AGACCAGTCTGAGCTGGATA+GGG | 0.543935 | 4.4:-4047521 | MS.gene20178:CDS |
| AGGACCAAGAGCCTGTCAAA+AGG | 0.545350 | 4.4:-4053642 | MS.gene20178:CDS |
| CCTTGTAATATAGATGATCC+TGG | 0.547464 | 4.4:-4047951 | MS.gene20178:CDS |
| CAATGAGGAATCTACTGGAC+AGG | 0.547527 | 4.4:+4048103 | None:intergenic |
| GGTAATTGAAGCTGGGAAGA+AGG | 0.549955 | 4.4:-4047410 | MS.gene20178:CDS |
| TGGATCCAGCATCAGGATGA+AGG | 0.551852 | 4.4:-4048415 | MS.gene20178:intron |
| GTTTGGACTCTGTCCAGATA+AGG | 0.551930 | 4.4:+4045936 | None:intergenic |
| CTGTAATCTCAGTCAGATTG+AGG | 0.552109 | 4.4:+4047458 | None:intergenic |
| CGGTCAAAGCAATGGCTGGT+TGG | 0.560240 | 4.4:+4043230 | None:intergenic |
| TTGTCAGAACGAGGCAACAA+TGG | 0.560653 | 4.4:-4048985 | MS.gene20178:CDS |
| TAGGGTGTATGAGTTTCCTC+CGG | 0.563217 | 4.4:+4043303 | None:intergenic |
| CAGACTATTTGCCGTCACCT+GGG | 0.563653 | 4.4:-4047438 | MS.gene20178:CDS |
| ATATAGATGATCCTGGCCAC+AGG | 0.564017 | 4.4:-4047944 | MS.gene20178:CDS |
| GGTGCTTTCATGTTACAACT+AGG | 0.564917 | 4.4:+4053505 | None:intergenic |
| GCAACGGTCAAAGCAATGGC+TGG | 0.565470 | 4.4:+4043226 | None:intergenic |
| AACAAACTCATCAAGGGTGA+AGG | 0.565704 | 4.4:+4051002 | None:intergenic |
| AATAAGAAAGCTACATTACA+GGG | 0.566537 | 4.4:-4052986 | MS.gene20178:CDS |
| ATCCTCTGAAGATGGTCACT+GGG | 0.566566 | 4.4:-4047907 | MS.gene20178:CDS |
| GCTGGATTCGGTTCCAAGCA+AGG | 0.566700 | 4.4:-4050540 | MS.gene20178:CDS |
| CATTGATGCAAAAGATGCAA+TGG | 0.566879 | 4.4:+4046016 | None:intergenic |
| ATCGTAATGAGAGTTGTCAT+AGG | 0.567151 | 4.4:+4043284 | None:intergenic |
| ATTACCACGGCCCCAGGTGA+CGG | 0.567845 | 4.4:+4047427 | None:intergenic |
| AGTCCAAACTCAGAAGTCAC+AGG | 0.571605 | 4.4:-4045922 | MS.gene20178:CDS |
| ACAACTGCAATGCATTAAAG+AGG | 0.571936 | 4.4:-4048144 | MS.gene20178:CDS |
| ATCGGCAACGGTCAAAGCAA+TGG | 0.573324 | 4.4:+4043222 | None:intergenic |
| GCTTCTATCTGACATTGAAG+TGG | 0.574080 | 4.4:-4050810 | MS.gene20178:CDS |
| TGAGCCACCAAGCATTCCAT+TGG | 0.574961 | 4.4:+4052669 | None:intergenic |
| GTGCTTTCATGTTACAACTA+GGG | 0.576896 | 4.4:+4053506 | None:intergenic |
| TCAAATTCATTTCCCAGAGT+AGG | 0.578521 | 4.4:+4055009 | None:intergenic |
| GAGAGACATGGTATGGGCAA+AGG | 0.578738 | 4.4:-4053478 | MS.gene20178:CDS |
| AAGGTCTAATGACAATTTGG+AGG | 0.579831 | 4.4:-4053270 | MS.gene20178:CDS |
| GATAGCTCAATATCTGAGGC+GGG | 0.580724 | 4.4:-4052790 | MS.gene20178:CDS |
| AGAGCCTGTCAAAAGGAGAA+AGG | 0.581783 | 4.4:-4053635 | MS.gene20178:intron |
| AAGAGACATGGTATGGGCAA+AGG | 0.584036 | 4.4:-4053415 | MS.gene20178:CDS |
| TCAAAGAGAGGGCCTTGGCA+AGG | 0.585213 | 4.4:-4050511 | MS.gene20178:intron |
| TTCAATGATTGAATCTGTGA+TGG | 0.585951 | 4.4:+4047100 | None:intergenic |
| TGAAGCTGGGAAGAAGGAAG+AGG | 0.586208 | 4.4:-4047404 | MS.gene20178:CDS |
| TTTAAAATCTTGTCAGAACG+AGG | 0.587182 | 4.4:-4048994 | MS.gene20178:CDS |
| TGAGATGGCAAAGTCAATGC+AGG | 0.587326 | 4.4:-4048950 | MS.gene20178:intron |
| AATGATGATGCTCCTACTCT+GGG | 0.588700 | 4.4:-4055021 | MS.gene20178:CDS |
| GCGTATGAGCACTGTTGCAA+AGG | 0.588763 | 4.4:-4048739 | MS.gene20178:CDS |
| ACTAAAGCTGATGAGAGGAA+AGG | 0.589673 | 4.4:-4055223 | None:intergenic |
| CAAAAGCTCCACTAAAGTTG+AGG | 0.593595 | 4.4:+4046225 | None:intergenic |
| TCGTAATGAGAGTTGTCATA+GGG | 0.594388 | 4.4:+4043285 | None:intergenic |
| TAGATGATCCTGGCCACAGG+AGG | 0.595474 | 4.4:-4047941 | MS.gene20178:CDS |
| TGTCAGTTCTGGATGATAGA+GGG | 0.595858 | 4.4:-4047654 | MS.gene20178:CDS |
| AGCCTGAACAAACTCATCAA+GGG | 0.599006 | 4.4:+4050996 | None:intergenic |
| GAGCTGAGAGAGATACAAGA+AGG | 0.599309 | 4.4:-4052727 | MS.gene20178:CDS |
| GGGCCGTGGTAATTGAAGCT+GGG | 0.599356 | 4.4:-4047417 | MS.gene20178:CDS |
| AGACTATTTGCCGTCACCTG+GGG | 0.600734 | 4.4:-4047437 | MS.gene20178:CDS |
| GTGCCACCGTGTTATTCTCG+TGG | 0.601615 | 4.4:-4055192 | MS.gene20178:CDS |
| ACTTCAAGGTTCCAGGGCAT+AGG | 0.601780 | 4.4:+4049025 | None:intergenic |
| AGATAGCTCAATATCTGAGG+CGG | 0.604337 | 4.4:-4052791 | MS.gene20178:CDS |
| TTTAGATAGCTCAATATCTG+AGG | 0.608942 | 4.4:-4052794 | MS.gene20178:CDS |
| CAAGGTGCCTTTCAAAGAGA+GGG | 0.609129 | 4.4:-4050522 | MS.gene20178:CDS |
| CTCAAAGTTCCATATTCAGG+AGG | 0.611836 | 4.4:-4048075 | MS.gene20178:CDS |
| CCTGTGAAGAGACATGGTAT+GGG | 0.611916 | 4.4:-4053358 | MS.gene20178:CDS |
| AGGTTAGCAATATTGGAATG+GGG | 0.612766 | 4.4:-4047558 | MS.gene20178:CDS |
| AAGCTCGTCATCAACACTAC+CGG | 0.614151 | 4.4:+4048683 | None:intergenic |
| ACTTCACCAACCATAGAGCA+AGG | 0.614951 | 4.4:+4045976 | None:intergenic |
| TGGATGCAAAGTTTCTGAGA+TGG | 0.615952 | 4.4:-4048965 | MS.gene20178:CDS |
| AGGTCTAATGACAATTTGGA+GGG | 0.616828 | 4.4:-4053269 | MS.gene20178:CDS |
| ATGCCTGAAGATGCCCTGGT+TGG | 0.618515 | 4.4:-4046298 | MS.gene20178:CDS |
| TTTCAGTGCAAATTTCCTGA+CGG | 0.619499 | 4.4:-4046053 | MS.gene20178:CDS |
| AGCTGCAATTTATGCAATCG+AGG | 0.620896 | 4.4:-4047077 | MS.gene20178:intron |
| ACAAACTCATCAAGGGTGAA+GGG | 0.620929 | 4.4:+4051003 | None:intergenic |
| GCAAGGTGCCTTTCAAAGAG+AGG | 0.621733 | 4.4:-4050523 | MS.gene20178:CDS |
| ATGTTGTAAAATATGGCAGA+AGG | 0.622775 | 4.4:-4047309 | MS.gene20178:CDS |
| TAATTTCTTCACCAGTTCCG+GGG | 0.623751 | 4.4:+4052391 | None:intergenic |
| AAAAGTGCTTCAGAGAGAGA+AGG | 0.626049 | 4.4:-4055166 | MS.gene20178:CDS |
| AGCATCATCATTCAGCAACA+CGG | 0.629233 | 4.4:+4055032 | None:intergenic |
| CTTCCCAGCTTCAATTACCA+CGG | 0.632661 | 4.4:+4047414 | None:intergenic |
| TTCATCTTGACAGCACCTGG+GGG | 0.632862 | 4.4:+4052446 | None:intergenic |
| ACAACCACACTTCTCCTGCA+TGG | 0.633047 | 4.4:+4048523 | None:intergenic |
| TTGTAACATGAAAGCACCTG+TGG | 0.633155 | 4.4:-4053500 | MS.gene20178:CDS |
| CTCCCAGTGACCATCTTCAG+AGG | 0.634449 | 4.4:+4047905 | None:intergenic |
| GACTCTGATACATGTAGCAG+CGG | 0.637550 | 4.4:-4048657 | MS.gene20178:CDS |
| AAAGCACCTGTGGAGAGACA+TGG | 0.639506 | 4.4:-4053490 | MS.gene20178:CDS |
| GGAGGTGATTGATACAGAAG+AGG | 0.643789 | 4.4:-4047886 | MS.gene20178:intron |
| GGAGCAGCAAAAGTGATAGG+AGG | 0.645999 | 4.4:+4043251 | None:intergenic |
| CAGTCAGATACAGAGGACTC+CGG | 0.646933 | 4.4:-4048702 | MS.gene20178:CDS |
| CTCTGAAGATGGTCACTGGG+AGG | 0.648609 | 4.4:-4047904 | MS.gene20178:CDS |
| CTGTGAAGAGACATGGTATG+GGG | 0.650147 | 4.4:-4053357 | MS.gene20178:CDS |
| TTTCTTCACCAGTTCCGGGG+AGG | 0.651652 | 4.4:+4052394 | None:intergenic |
| ACTCGCACTTCAAGGTTCCA+GGG | 0.651902 | 4.4:+4049019 | None:intergenic |
| ACTCTAATATAAGAAAATTG+CGG | 0.652919 | 4.4:-4048608 | MS.gene20178:CDS |
| AGATGATCCTGGCCACAGGA+GGG | 0.655779 | 4.4:-4047940 | MS.gene20178:CDS |
| GTCCAAACTCAGAAGTCACA+GGG | 0.655949 | 4.4:-4045921 | MS.gene20178:CDS |
| AGTTCCGGGGAGGAGTCCCA+AGG | 0.656721 | 4.4:+4052404 | None:intergenic |
| AAACCTTTCCAGCACAACGG+AGG | 0.657818 | 4.4:-4048841 | MS.gene20178:CDS |
| ATTAAACCTTTCCAGCACAA+CGG | 0.658154 | 4.4:-4048844 | MS.gene20178:CDS |
| CCTGTGAAGAGACATGGTAT+GGG | 0.659004 | 4.4:-4053295 | MS.gene20178:CDS |
| CCTGTGAAGAGACATGGTAT+GGG | 0.659004 | 4.4:-4053421 | MS.gene20178:CDS |
| CCTGTGGAGAGACATGGTAT+GGG | 0.659004 | 4.4:-4053484 | MS.gene20178:CDS |
| ACGCAGTCGATATGCAGAGG+AGG | 0.660034 | 4.4:+4048758 | None:intergenic |
| CCACCGTGTTATTCTCGTGG+CGG | 0.661862 | 4.4:-4055189 | MS.gene20178:CDS |
| CTTCCTCCAAGCACCAACCA+GGG | 0.667120 | 4.4:+4046285 | None:intergenic |
| GAACTTTGAGAATAACAATG+AGG | 0.667240 | 4.4:+4048088 | None:intergenic |
| AGCTCTAGTATCCAATTACG+TGG | 0.667354 | 4.4:-4048206 | MS.gene20178:CDS |
| ATAACACTAAAGCTGATGAG+AGG | 0.669095 | 4.4:-4055228 | None:intergenic |
| TCTAACCTAAAACTATACAT+CGG | 0.669727 | 4.4:+4043792 | None:intergenic |
| CAGGATCATCTATATTACAA+GGG | 0.675095 | 4.4:+4047952 | None:intergenic |
| TGATTCTCAGTCAGATACAG+AGG | 0.675639 | 4.4:-4048709 | MS.gene20178:CDS |
| AATCCACATAGCCATGTGCA+GGG | 0.676608 | 4.4:-4047164 | MS.gene20178:CDS |
| CTTCACCAACCATAGAGCAA+GGG | 0.676806 | 4.4:+4045977 | None:intergenic |
| AAAGCACCTGTGAAGAGACA+TGG | 0.677781 | 4.4:-4053301 | MS.gene20178:CDS |
| AAAGCACCTGTGAAGAGACA+TGG | 0.677781 | 4.4:-4053364 | MS.gene20178:CDS |
| TCATCTTGACAGCACCTGGG+GGG | 0.684014 | 4.4:+4052447 | None:intergenic |
| GCAAGGGCAGATGAAGTATG+GGG | 0.684017 | 4.4:+4045993 | None:intergenic |
| CATACGCAGTCGATATGCAG+AGG | 0.685025 | 4.4:+4048755 | None:intergenic |
| AAAGCACCTGTGAAGAGACA+TGG | 0.686117 | 4.4:-4053427 | MS.gene20178:CDS |
| AAGAATCATATTCTTGAACA+CGG | 0.690524 | 4.4:+4047362 | None:intergenic |
| ATTCAAAGTAAACCCTCCTG+TGG | 0.694820 | 4.4:+4047928 | None:intergenic |
| GGATGATAGAGGGAAGCGCG+AGG | 0.701469 | 4.4:-4047644 | MS.gene20178:CDS |
| GCTCATGCTTCAGAATCCGG+AGG | 0.701987 | 4.4:-4043319 | MS.gene20178:CDS |
| AGAGCCATGCAGGAGAAGTG+TGG | 0.713605 | 4.4:-4048527 | MS.gene20178:CDS |
| ATAAGAAAGCTACATTACAG+GGG | 0.716412 | 4.4:-4052985 | MS.gene20178:CDS |
| TTTCCGCCACGAGAATAACA+CGG | 0.723933 | 4.4:+4055186 | None:intergenic |
| GTTACTTGGACAAATTCACG+TGG | 0.729846 | 4.4:-4050846 | MS.gene20178:CDS |
| CCGCCACGAGAATAACACGG+TGG | 0.798596 | 4.4:+4055189 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 4043233 | 4055235 | 4043233 | ID=MS.gene20178 |
| chr4.4 | mRNA | 4043233 | 4055235 | 4043233 | ID=MS.gene20178.t1;Parent=MS.gene20178 |
| chr4.4 | exon | 4054995 | 4055235 | 4054995 | ID=MS.gene20178.t1.exon1;Parent=MS.gene20178.t1 |
| chr4.4 | CDS | 4054995 | 4055235 | 4054995 | ID=cds.MS.gene20178.t1;Parent=MS.gene20178.t1 |
| chr4.4 | exon | 4053636 | 4053694 | 4053636 | ID=MS.gene20178.t1.exon2;Parent=MS.gene20178.t1 |
| chr4.4 | CDS | 4053636 | 4053694 | 4053636 | ID=cds.MS.gene20178.t1;Parent=MS.gene20178.t1 |
| chr4.4 | exon | 4053144 | 4053554 | 4053144 | ID=MS.gene20178.t1.exon3;Parent=MS.gene20178.t1 |
| chr4.4 | CDS | 4053144 | 4053554 | 4053144 | ID=cds.MS.gene20178.t1;Parent=MS.gene20178.t1 |
| chr4.4 | exon | 4052955 | 4053032 | 4052955 | ID=MS.gene20178.t1.exon4;Parent=MS.gene20178.t1 |
| chr4.4 | CDS | 4052955 | 4053032 | 4052955 | ID=cds.MS.gene20178.t1;Parent=MS.gene20178.t1 |
| chr4.4 | exon | 4052659 | 4052875 | 4052659 | ID=MS.gene20178.t1.exon5;Parent=MS.gene20178.t1 |
| chr4.4 | CDS | 4052659 | 4052875 | 4052659 | ID=cds.MS.gene20178.t1;Parent=MS.gene20178.t1 |
| chr4.4 | exon | 4052385 | 4052485 | 4052385 | ID=MS.gene20178.t1.exon6;Parent=MS.gene20178.t1 |
| chr4.4 | CDS | 4052385 | 4052485 | 4052385 | ID=cds.MS.gene20178.t1;Parent=MS.gene20178.t1 |
| chr4.4 | exon | 4050984 | 4051070 | 4050984 | ID=MS.gene20178.t1.exon7;Parent=MS.gene20178.t1 |
| chr4.4 | CDS | 4050984 | 4051070 | 4050984 | ID=cds.MS.gene20178.t1;Parent=MS.gene20178.t1 |
| chr4.4 | exon | 4050745 | 4050876 | 4050745 | ID=MS.gene20178.t1.exon8;Parent=MS.gene20178.t1 |
| chr4.4 | CDS | 4050745 | 4050876 | 4050745 | ID=cds.MS.gene20178.t1;Parent=MS.gene20178.t1 |
| chr4.4 | exon | 4050512 | 4050652 | 4050512 | ID=MS.gene20178.t1.exon9;Parent=MS.gene20178.t1 |
| chr4.4 | CDS | 4050512 | 4050652 | 4050512 | ID=cds.MS.gene20178.t1;Parent=MS.gene20178.t1 |
| chr4.4 | exon | 4048951 | 4049073 | 4048951 | ID=MS.gene20178.t1.exon10;Parent=MS.gene20178.t1 |
| chr4.4 | CDS | 4048951 | 4049073 | 4048951 | ID=cds.MS.gene20178.t1;Parent=MS.gene20178.t1 |
| chr4.4 | exon | 4048416 | 4048874 | 4048416 | ID=MS.gene20178.t1.exon11;Parent=MS.gene20178.t1 |
| chr4.4 | CDS | 4048416 | 4048874 | 4048416 | ID=cds.MS.gene20178.t1;Parent=MS.gene20178.t1 |
| chr4.4 | exon | 4047887 | 4048255 | 4047887 | ID=MS.gene20178.t1.exon12;Parent=MS.gene20178.t1 |
| chr4.4 | CDS | 4047887 | 4048255 | 4047887 | ID=cds.MS.gene20178.t1;Parent=MS.gene20178.t1 |
| chr4.4 | exon | 4047078 | 4047692 | 4047078 | ID=MS.gene20178.t1.exon13;Parent=MS.gene20178.t1 |
| chr4.4 | CDS | 4047078 | 4047692 | 4047078 | ID=cds.MS.gene20178.t1;Parent=MS.gene20178.t1 |
| chr4.4 | exon | 4046222 | 4046326 | 4046222 | ID=MS.gene20178.t1.exon14;Parent=MS.gene20178.t1 |
| chr4.4 | CDS | 4046222 | 4046326 | 4046222 | ID=cds.MS.gene20178.t1;Parent=MS.gene20178.t1 |
| chr4.4 | exon | 4045916 | 4046117 | 4045916 | ID=MS.gene20178.t1.exon15;Parent=MS.gene20178.t1 |
| chr4.4 | CDS | 4045916 | 4046117 | 4045916 | ID=cds.MS.gene20178.t1;Parent=MS.gene20178.t1 |
| chr4.4 | exon | 4044066 | 4044081 | 4044066 | ID=MS.gene20178.t1.exon16;Parent=MS.gene20178.t1 |
| chr4.4 | CDS | 4044066 | 4044081 | 4044066 | ID=cds.MS.gene20178.t1;Parent=MS.gene20178.t1 |
| chr4.4 | exon | 4043782 | 4043827 | 4043782 | ID=MS.gene20178.t1.exon17;Parent=MS.gene20178.t1 |
| chr4.4 | CDS | 4043782 | 4043827 | 4043782 | ID=cds.MS.gene20178.t1;Parent=MS.gene20178.t1 |
| chr4.4 | exon | 4043233 | 4043340 | 4043233 | ID=MS.gene20178.t1.exon18;Parent=MS.gene20178.t1 |
| chr4.4 | CDS | 4043233 | 4043340 | 4043233 | ID=cds.MS.gene20178.t1;Parent=MS.gene20178.t1 |
| Gene Sequence |
| Protein sequence |
