AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene20247

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene20247.t1 MTR_5g016510 97.500 320 4 1 1 320 1 316 0.0 626
MS.gene20247.t1 MTR_4g094982 52.905 327 89 8 1 319 1 270 1.84e-104 306
MS.gene20247.t1 MTR_6g015455 86.726 113 15 0 1 113 1 113 5.49e-64 219
MS.gene20247.t1 MTR_3g101290 74.766 107 27 0 1 107 33 139 1.64e-56 182
MS.gene20247.t1 MTR_5g082910 38.000 300 148 7 2 297 16 281 1.79e-53 177
MS.gene20247.t1 MTR_4g019370 68.932 103 32 0 3 105 36 138 3.35e-47 162
MS.gene20247.t1 MTR_5g041570 56.436 101 44 0 5 105 134 234 3.78e-38 140
MS.gene20247.t1 MTR_4g082040 55.446 101 45 0 5 105 105 205 1.02e-37 139
MS.gene20247.t1 MTR_1g026870 54.206 107 49 0 4 110 84 190 1.49e-36 139
MS.gene20247.t1 MTR_3g110028 42.424 165 82 3 4 159 84 244 1.53e-36 139
MS.gene20247.t1 MTR_6g027370 39.752 161 90 2 4 161 98 254 3.12e-36 134
MS.gene20247.t1 MTR_7g061330 57.843 102 43 0 4 105 112 213 4.60e-36 137
MS.gene20247.t1 MTR_7g461410 57.843 102 43 0 4 105 112 213 4.60e-36 137
MS.gene20247.t1 MTR_7g061330 52.101 119 56 1 4 122 76 193 5.91e-36 136
MS.gene20247.t1 MTR_7g086960 46.617 133 62 2 5 128 89 221 5.57e-35 130
MS.gene20247.t1 MTR_6g074860 54.000 100 46 0 5 104 4 103 6.10e-35 127
MS.gene20247.t1 MTR_3g089045 56.436 101 44 0 5 105 16 116 1.26e-34 128
MS.gene20247.t1 MTR_3g077650 52.885 104 49 0 4 107 180 283 2.54e-33 127
MS.gene20247.t1 MTR_4g105660 52.885 104 49 0 4 107 179 282 2.79e-33 127
MS.gene20247.t1 MTR_3g461490 50.459 109 53 1 5 112 14 122 4.87e-33 124
MS.gene20247.t1 MTR_5g042030 50.435 115 56 1 5 118 9 123 8.99e-33 123
MS.gene20247.t1 MTR_7g037260 51.961 102 49 0 4 105 144 245 1.69e-31 121
MS.gene20247.t1 MTR_5g070020 48.077 104 54 0 4 107 121 224 2.13e-31 120
MS.gene20247.t1 MTR_3g052450 53.922 102 46 1 5 105 42 143 2.68e-31 123
MS.gene20247.t1 MTR_7g037130 51.456 103 48 1 4 106 144 244 2.85e-31 120
MS.gene20247.t1 MTR_5g049190 47.115 104 55 0 4 107 18 121 3.28e-31 117
MS.gene20247.t1 MTR_4g029540 49.606 127 60 3 5 129 12 136 4.07e-31 119
MS.gene20247.t1 MTR_5g029840 50.459 109 53 1 5 112 14 122 4.79e-31 119
MS.gene20247.t1 MTR_7g451170 50.962 104 51 0 2 105 188 291 7.08e-31 120
MS.gene20247.t1 MTR_3g463400 49.038 104 53 0 4 107 132 235 8.98e-31 120
MS.gene20247.t1 MTR_3g052430 52.941 102 47 1 5 105 43 144 1.56e-30 121
MS.gene20247.t1 MTR_8g095390 50.427 117 57 1 5 120 14 130 2.28e-30 117
MS.gene20247.t1 MTR_4g088015 51.485 101 49 0 4 104 220 320 4.20e-30 119
MS.gene20247.t1 MTR_4g478180 51.818 110 50 2 5 112 15 123 4.66e-30 117
MS.gene20247.t1 MTR_5g010650 53.061 98 46 0 2 99 107 204 5.50e-30 119
MS.gene20247.t1 MTR_1g100653 52.941 102 47 1 5 105 14 115 7.63e-30 115
MS.gene20247.t1 MTR_6g012690 46.789 109 57 1 5 112 14 122 8.91e-30 116
MS.gene20247.t1 MTR_4g091490 46.789 109 57 1 5 112 15 123 9.43e-30 116
MS.gene20247.t1 MTR_8g006470 54.902 102 44 2 5 104 12 113 1.12e-29 114
MS.gene20247.t1 MTR_5g007370 50.909 110 51 2 5 112 14 122 1.42e-29 114
MS.gene20247.t1 MTR_2g011660 47.706 109 56 1 5 112 15 123 1.78e-29 115
MS.gene20247.t1 MTR_1g085040 50.427 117 55 2 5 119 14 129 2.09e-29 115
MS.gene20247.t1 MTR_7g102110 49.533 107 52 2 5 109 14 120 3.46e-29 113
MS.gene20247.t1 MTR_3g097450 41.026 156 77 2 5 159 14 155 4.60e-29 113
MS.gene20247.t1 MTR_1g076150 45.255 137 62 4 5 132 14 146 4.81e-29 112
MS.gene20247.t1 MTR_3g074520 48.182 110 54 2 5 112 14 122 5.39e-29 114
MS.gene20247.t1 MTR_6g009430 42.975 121 68 1 5 124 14 134 7.68e-29 113
MS.gene20247.t1 MTR_0008s0470 38.312 154 90 2 5 157 15 164 7.91e-29 112
MS.gene20247.t1 MTR_7g076740 51.351 111 50 3 5 112 14 123 8.12e-29 112
MS.gene20247.t1 MTR_7g011170 47.706 109 56 1 5 112 14 122 9.70e-29 112
MS.gene20247.t1 MTR_3g103570 50.485 103 49 2 5 105 14 116 1.20e-28 113
MS.gene20247.t1 MTR_8g017500 32.932 249 134 9 5 229 14 253 1.26e-28 113
MS.gene20247.t1 MTR_1g100667 48.598 107 54 1 5 110 15 121 1.62e-28 111
MS.gene20247.t1 MTR_0008s0390 36.364 154 84 2 5 157 15 155 1.72e-28 111
MS.gene20247.t1 MTR_1g043080 50.980 102 49 1 5 105 14 115 2.09e-28 110
MS.gene20247.t1 MTR_4g057635 48.624 109 54 2 5 111 14 122 2.78e-28 112
MS.gene20247.t1 MTR_2g097910 41.791 134 77 1 5 137 22 155 2.79e-28 111
MS.gene20247.t1 MTR_5g014990 50.485 103 49 2 5 105 14 116 2.85e-28 111
MS.gene20247.t1 MTR_1g045610 48.113 106 52 2 5 108 23 127 2.87e-28 110
MS.gene20247.t1 MTR_0063s0090 44.275 131 62 4 5 133 14 135 3.07e-28 109
MS.gene20247.t1 MTR_1g112760 48.718 117 57 2 5 119 15 130 3.46e-28 109
MS.gene20247.t1 MTR_5g079670 47.706 109 56 1 5 112 13 121 4.31e-28 108
MS.gene20247.t1 MTR_7g117730 49.057 106 45 2 5 105 14 115 4.52e-28 109
MS.gene20247.t1 MTR_4g065017 46.847 111 58 1 5 114 19 129 4.56e-28 111
MS.gene20247.t1 MTR_8g031360 36.508 189 92 4 1 162 11 198 4.62e-28 110
MS.gene20247.t1 MTR_1g073170 49.515 103 49 2 5 105 22 123 5.45e-28 109
MS.gene20247.t1 MTR_7g035350 51.485 101 49 0 1 101 221 321 6.31e-28 112
MS.gene20247.t1 MTR_3g077110 46.341 123 63 2 5 125 14 135 6.34e-28 111
MS.gene20247.t1 MTR_4g100720 47.170 106 55 1 5 109 15 120 7.38e-28 107
MS.gene20247.t1 MTR_7g087130 49.057 106 53 1 5 109 14 119 1.12e-27 110
MS.gene20247.t1 MTR_8g027345 51.961 102 48 1 5 105 14 115 1.14e-27 109
MS.gene20247.t1 MTR_2g099740 36.207 174 89 4 5 174 14 169 1.20e-27 111
MS.gene20247.t1 MTR_1g017140 50.485 103 49 2 5 105 14 116 1.23e-27 110
MS.gene20247.t1 MTR_2g089620 36.538 156 98 1 5 159 14 169 1.33e-27 110
MS.gene20247.t1 MTR_2g064160 49.091 110 53 2 5 112 13 121 1.41e-27 109
MS.gene20247.t1 MTR_6g027340 36.800 125 79 0 5 129 16 140 1.57e-27 107
MS.gene20247.t1 MTR_8g042410 50.000 102 50 1 5 105 39 140 1.58e-27 112
MS.gene20247.t1 MTR_3g028740 51.961 102 48 1 5 105 24 125 1.73e-27 110
MS.gene20247.t1 MTR_4g073420 46.552 116 61 1 5 119 14 129 2.31e-27 108
MS.gene20247.t1 MTR_1g017000 47.573 103 52 2 5 105 14 116 2.54e-27 107
MS.gene20247.t1 MTR_7g115650 47.170 106 55 1 1 105 10 115 2.64e-27 106
MS.gene20247.t1 MTR_4g105130 47.500 120 62 1 5 123 14 133 2.70e-27 110
MS.gene20247.t1 MTR_7g110830 49.138 116 58 1 5 119 14 129 2.95e-27 110
MS.gene20247.t1 MTR_2g095520 53.061 98 44 2 5 100 14 111 3.07e-27 108
MS.gene20247.t1 MTR_6g055910 50.000 102 50 1 5 105 16 117 3.53e-27 108
MS.gene20247.t1 MTR_4g063100 47.059 102 53 1 5 105 9 110 3.57e-27 107
MS.gene20247.t1 MTR_1g085640 46.341 123 65 1 5 126 14 136 3.84e-27 110
MS.gene20247.t1 MTR_2g034790 45.217 115 62 1 5 118 14 128 4.95e-27 108
MS.gene20247.t1 MTR_0251s0050 44.444 117 64 1 5 120 15 131 5.15e-27 107
MS.gene20247.t1 MTR_2g089450 48.039 102 50 2 5 104 14 114 5.28e-27 106
MS.gene20247.t1 MTR_8g017440 35.052 194 101 6 5 175 14 205 5.84e-27 108
MS.gene20247.t1 MTR_8g098860 51.961 102 48 1 5 105 14 115 6.03e-27 108
MS.gene20247.t1 MTR_4g082230 42.308 130 73 2 5 133 14 142 6.67e-27 109
MS.gene20247.t1 MTR_6g027360 36.800 125 79 0 5 129 78 202 7.13e-27 107
MS.gene20247.t1 MTR_1g021230 50.980 102 49 1 5 105 59 160 7.37e-27 110
MS.gene20247.t1 MTR_4g082290 42.308 130 73 2 5 133 14 142 8.83e-27 109
MS.gene20247.t1 MTR_4g121460 42.857 133 73 2 5 134 14 146 9.11e-27 108
MS.gene20247.t1 MTR_7g010210 49.020 102 51 1 5 105 14 115 1.21e-26 106
MS.gene20247.t1 MTR_0140s0030 49.057 106 45 2 5 105 15 116 1.26e-26 107
MS.gene20247.t1 MTR_0489s0020 49.057 106 45 2 5 105 15 116 1.26e-26 107
MS.gene20247.t1 MTR_7g010210 49.020 102 51 1 5 105 14 115 1.28e-26 107
MS.gene20247.t1 MTR_5g088080 48.182 110 54 3 2 109 11 119 1.91e-26 105
MS.gene20247.t1 MTR_5g088150 48.182 110 54 3 2 109 11 119 1.91e-26 105
MS.gene20247.t1 MTR_5g488210 48.182 110 54 3 2 109 11 119 1.91e-26 105
MS.gene20247.t1 MTR_1g110460 41.284 109 63 1 5 112 28 136 2.09e-26 106
MS.gene20247.t1 MTR_3g011610 49.020 102 51 1 5 105 39 140 2.15e-26 109
MS.gene20247.t1 MTR_4g485530 43.363 113 63 1 1 112 10 122 2.28e-26 103
MS.gene20247.t1 MTR_8g017540 35.821 201 103 8 5 182 60 257 2.46e-26 107
MS.gene20247.t1 MTR_5g488170 48.182 110 54 3 2 109 11 119 2.47e-26 104
MS.gene20247.t1 MTR_5g088640 48.182 110 54 3 2 109 11 119 2.48e-26 105
MS.gene20247.t1 MTR_4g097570 50.000 98 46 2 5 99 14 111 2.78e-26 105
MS.gene20247.t1 MTR_3g083540 44.828 116 63 1 5 119 43 158 2.81e-26 105
MS.gene20247.t1 MTR_5g010020 53.608 97 44 1 5 100 14 110 3.08e-26 106
MS.gene20247.t1 MTR_1g062940 48.544 103 50 2 5 105 8 109 3.83e-26 103
MS.gene20247.t1 MTR_7g111290 50.427 117 55 2 5 119 14 129 3.90e-26 107
MS.gene20247.t1 MTR_7g035075 48.077 104 53 1 2 104 13 116 4.40e-26 103
MS.gene20247.t1 MTR_2g088170 52.941 102 47 1 5 105 31 132 4.95e-26 107
MS.gene20247.t1 MTR_1g043050 48.039 102 52 1 5 105 14 115 7.66e-26 103
MS.gene20247.t1 MTR_3g039990 46.364 110 50 2 5 109 15 120 1.12e-25 104
MS.gene20247.t1 MTR_7g096930 49.020 102 51 1 5 105 14 115 1.24e-25 103
MS.gene20247.t1 MTR_7g450950 45.714 105 54 1 4 105 156 260 1.29e-25 105
MS.gene20247.t1 MTR_6g090405 47.573 103 52 2 5 105 14 116 1.67e-25 102
MS.gene20247.t1 MTR_4g102380 43.802 121 65 2 5 123 14 133 1.80e-25 103
MS.gene20247.t1 MTR_2g067420 51.546 97 46 1 5 100 16 112 1.99e-25 104
MS.gene20247.t1 MTR_4g097570 49.485 97 47 2 5 99 14 110 2.07e-25 103
MS.gene20247.t1 MTR_8g020490 47.059 102 53 1 5 105 10 111 2.74e-25 102
MS.gene20247.t1 MTR_0008s0280 45.763 118 58 4 5 117 14 130 3.08e-25 101
MS.gene20247.t1 MTR_5g062790 48.598 107 52 3 1 105 7 112 3.23e-25 103
MS.gene20247.t1 MTR_1g057980 48.958 96 49 0 5 100 80 175 3.24e-25 103
MS.gene20247.t1 MTR_2g096380 44.660 103 56 1 5 106 8 110 4.32e-25 101
MS.gene20247.t1 MTR_6g012180 48.515 101 43 2 5 100 14 110 4.95e-25 102
MS.gene20247.t1 MTR_2g089420 46.602 103 52 2 5 105 13 114 5.48e-25 104
MS.gene20247.t1 MTR_7g017260 41.379 116 65 1 5 117 27 142 7.52e-25 101
MS.gene20247.t1 MTR_4g128670 50.000 98 47 2 5 100 14 111 8.39e-25 102
MS.gene20247.t1 MTR_8g017340 50.000 104 48 3 5 105 14 116 1.28e-24 103
MS.gene20247.t1 MTR_6g006030 44.340 106 58 1 5 109 16 121 1.33e-24 99.4
MS.gene20247.t1 MTR_5g078140 43.333 120 65 2 5 122 14 132 2.06e-24 101
MS.gene20247.t1 MTR_3g065440 44.545 110 58 2 5 112 14 122 2.08e-24 101
MS.gene20247.t1 MTR_5g079120 39.683 126 75 1 5 129 63 188 2.28e-24 100
MS.gene20247.t1 MTR_0247s0040 44.000 100 55 1 5 103 9 108 4.74e-24 97.1
MS.gene20247.t1 MTR_0193s0090 42.574 101 57 1 5 104 9 109 6.51e-24 97.4
MS.gene20247.t1 MTR_5g078910 42.157 102 58 1 5 105 9 110 1.11e-23 99.0
MS.gene20247.t1 MTR_1g086530 43.119 109 61 1 5 112 35 143 1.15e-23 98.6
MS.gene20247.t1 MTR_0001s0360 41.905 105 60 1 5 108 9 113 1.35e-23 97.8
MS.gene20247.t1 MTR_8g017390 48.077 104 50 3 5 105 14 116 1.78e-23 100
MS.gene20247.t1 MTR_8g017350 49.038 104 49 3 5 105 14 116 1.83e-23 101
MS.gene20247.t1 MTR_5g079290 40.000 105 62 1 5 108 19 123 1.92e-23 97.4
MS.gene20247.t1 MTR_5g079220 41.176 102 59 1 5 105 23 124 1.95e-23 97.8
MS.gene20247.t1 MTR_4g125520 42.453 106 60 1 5 109 14 119 2.39e-23 98.2
MS.gene20247.t1 MTR_5g078800 42.157 102 58 1 5 105 9 110 3.39e-23 97.1
MS.gene20247.t1 MTR_5g078860 43.137 102 57 1 5 105 9 110 3.85e-23 97.4
MS.gene20247.t1 MTR_5g078930 39.683 126 75 1 5 129 11 136 4.11e-23 95.5
MS.gene20247.t1 MTR_3g045430 41.880 117 67 1 8 123 18 134 5.78e-23 97.1
MS.gene20247.t1 MTR_1g086510 42.202 109 62 1 5 112 23 131 6.18e-23 96.3
MS.gene20247.t1 MTR_2g033170 41.593 113 65 1 1 112 22 134 9.39e-23 97.1
MS.gene20247.t1 MTR_8g060940 42.424 99 56 1 5 102 9 107 5.37e-22 93.2
MS.gene20247.t1 MTR_1g083630 44.118 102 56 1 5 105 14 115 9.13e-22 96.3
MS.gene20247.t1 MTR_5g078950 40.000 100 59 1 5 103 9 108 1.36e-21 92.4
MS.gene20247.t1 MTR_0197s0010 37.391 115 71 1 7 120 5 119 6.81e-21 89.7
MS.gene20247.t1 MTR_4g123040 40.708 113 66 1 1 112 22 134 1.40e-20 90.5
MS.gene20247.t1 MTR_8g468380 39.048 105 63 1 8 112 25 128 2.64e-20 91.3
MS.gene20247.t1 MTR_7g109320 48.113 106 54 1 5 109 14 119 2.68e-20 90.5
MS.gene20247.t1 MTR_5g038910 37.755 98 61 0 8 105 29 126 2.73e-20 91.3
MS.gene20247.t1 MTR_5g038910 37.755 98 61 0 8 105 29 126 4.52e-20 90.1
MS.gene20247.t1 MTR_6g055910 52.941 68 32 0 38 105 21 88 3.50e-19 85.5
MS.gene20247.t1 MTR_4g063100 50.000 68 34 0 38 105 14 81 3.50e-19 85.1
MS.gene20247.t1 MTR_4g128190 44.860 107 45 4 5 110 13 106 3.79e-18 82.4
MS.gene20247.t1 MTR_2g096380 46.377 69 37 0 38 106 23 91 9.91e-18 80.9
MS.gene20247.t1 MTR_7g111290 49.412 85 43 0 38 122 6 90 2.37e-17 81.6
MS.gene20247.t1 MTR_5g007300 48.000 75 38 1 5 78 66 140 2.97e-17 77.4
MS.gene20247.t1 MTR_1g008970 40.426 94 37 1 2 95 107 181 1.59e-16 78.2
MS.gene20247.t1 MTR_1g085880 46.000 100 51 3 8 105 17 115 4.88e-16 75.5
MS.gene20247.t1 MTR_1g085770 46.000 100 51 3 8 105 17 115 9.33e-16 77.0
MS.gene20247.t1 MTR_7g061550 37.234 94 56 1 8 98 10 103 9.01e-14 71.6
MS.gene20247.t1 MTR_0023s0210 36.709 79 41 2 5 78 9 83 1.35e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene20247.t1 AT4G37260 50.578 346 110 11 1 319 9 320 8.47e-99 294
MS.gene20247.t1 AT5G67300 52.266 331 117 14 2 319 3 305 8.34e-90 271
MS.gene20247.t1 AT3G50060 51.140 307 102 9 2 295 3 274 9.68e-83 253
MS.gene20247.t1 AT2G23290 43.305 351 117 8 1 319 9 309 1.98e-81 249
MS.gene20247.t1 AT3G55730 68.224 107 34 0 3 109 54 160 3.63e-48 166
MS.gene20247.t1 AT3G09230 60.484 124 38 1 2 114 52 175 8.11e-47 162
MS.gene20247.t1 AT2G39880 65.049 103 36 0 3 105 48 150 3.51e-44 155
MS.gene20247.t1 AT3G09370 55.556 117 52 0 2 118 127 243 6.80e-39 144
MS.gene20247.t1 AT3G09370 55.556 117 52 0 2 118 132 248 6.89e-39 144
MS.gene20247.t1 AT3G09370 55.556 117 52 0 2 118 140 256 6.96e-39 144
MS.gene20247.t1 AT1G69560 55.446 101 45 0 5 105 107 207 2.49e-38 139
MS.gene20247.t1 AT4G32730 42.857 168 91 2 4 167 86 252 2.56e-38 144
MS.gene20247.t1 AT4G32730 42.857 168 91 2 4 167 86 252 2.69e-38 144
MS.gene20247.t1 AT4G32730 42.857 168 91 2 4 167 86 252 2.69e-38 144
MS.gene20247.t1 AT4G32730 42.857 168 91 2 4 167 86 252 2.69e-38 144
MS.gene20247.t1 AT4G32730 42.857 168 91 2 4 167 86 252 2.69e-38 144
MS.gene20247.t1 AT1G69560 55.446 101 45 0 5 105 123 223 2.73e-38 139
MS.gene20247.t1 AT1G26780 55.446 101 45 0 5 105 98 198 8.00e-38 136
MS.gene20247.t1 AT5G17800 47.015 134 68 1 5 138 93 223 9.69e-38 137
MS.gene20247.t1 AT1G26780 55.446 101 45 0 5 105 98 198 2.45e-37 137
MS.gene20247.t1 AT5G02320 50.000 120 60 0 4 123 66 185 3.39e-37 139
MS.gene20247.t1 AT3G29020 54.455 101 46 0 5 105 65 165 4.19e-37 133
MS.gene20247.t1 AT5G02320 50.000 120 60 0 4 123 126 245 4.99e-37 139
MS.gene20247.t1 AT5G02320 50.000 120 60 0 4 123 126 245 4.99e-37 139
MS.gene20247.t1 AT3G29020 54.455 101 46 0 5 105 67 167 1.86e-36 133
MS.gene20247.t1 AT5G11510 48.333 120 58 1 4 119 80 199 5.20e-36 138
MS.gene20247.t1 AT5G11510 48.333 120 58 1 4 119 80 199 5.20e-36 138
MS.gene20247.t1 AT5G11510 48.333 120 58 1 4 119 80 199 5.20e-36 138
MS.gene20247.t1 AT5G11510 48.333 120 58 1 4 119 80 199 5.62e-36 137
MS.gene20247.t1 AT5G11510 48.333 120 58 1 4 119 80 199 5.80e-36 137
MS.gene20247.t1 AT4G33450 52.475 101 48 0 5 105 19 119 2.31e-35 129
MS.gene20247.t1 AT1G17950 51.485 101 49 0 5 105 5 105 9.54e-35 127
MS.gene20247.t1 AT5G11050 50.962 104 51 0 4 107 104 207 1.53e-34 130
MS.gene20247.t1 AT1G73410 54.455 101 46 0 5 105 6 106 3.02e-34 124
MS.gene20247.t1 AT1G73410 54.455 101 46 0 5 105 6 106 3.71e-34 125
MS.gene20247.t1 AT5G60890 47.967 123 63 1 5 126 14 136 1.37e-33 125
MS.gene20247.t1 AT5G58850 38.509 161 95 2 4 160 104 264 1.56e-33 128
MS.gene20247.t1 AT3G27785 53.846 104 48 0 4 107 188 291 1.75e-33 128
MS.gene20247.t1 AT4G18770 51.818 110 48 1 4 108 216 325 2.01e-32 125
MS.gene20247.t1 AT5G10280 50.909 110 51 2 5 112 14 122 1.06e-31 121
MS.gene20247.t1 AT5G54230 49.541 109 54 1 5 112 14 122 9.09e-31 118
MS.gene20247.t1 AT5G16770 45.669 127 68 1 5 130 14 140 1.29e-30 118
MS.gene20247.t1 AT5G16770 45.669 127 68 1 5 130 14 140 1.29e-30 118
MS.gene20247.t1 AT5G65230 50.909 110 51 2 5 112 14 122 1.62e-30 117
MS.gene20247.t1 AT5G16770 45.669 127 68 1 5 130 14 140 2.04e-30 117
MS.gene20247.t1 AT5G16770 45.669 127 68 1 5 130 14 140 2.04e-30 117
MS.gene20247.t1 AT4G26930 53.465 101 46 1 5 104 21 121 2.97e-30 118
MS.gene20247.t1 AT4G28110 48.624 109 55 1 5 112 14 122 3.57e-30 116
MS.gene20247.t1 AT5G56110 47.706 109 56 1 5 112 14 122 3.69e-30 117
MS.gene20247.t1 AT1G34670 49.541 109 54 1 5 112 14 122 4.99e-30 117
MS.gene20247.t1 AT2G32460 52.941 102 47 1 5 105 20 121 5.16e-30 119
MS.gene20247.t1 AT2G32460 52.941 102 47 1 5 105 8 109 5.21e-30 119
MS.gene20247.t1 AT3G02940 49.541 109 54 1 5 112 14 122 5.44e-30 116
MS.gene20247.t1 AT4G21440 48.624 109 55 1 5 112 14 122 6.30e-30 117
MS.gene20247.t1 AT5G39700 47.475 99 52 0 6 104 57 155 6.31e-30 112
MS.gene20247.t1 AT5G15310 42.958 142 74 2 5 139 14 155 6.41e-30 114
MS.gene20247.t1 AT5G15310 42.958 142 74 2 5 139 14 155 9.42e-30 115
MS.gene20247.t1 AT5G15310 42.958 142 74 2 5 139 14 155 9.50e-30 115
MS.gene20247.t1 AT3G02940 49.541 109 54 1 5 112 14 122 1.05e-29 115
MS.gene20247.t1 AT3G02940 49.541 109 54 1 5 112 14 122 1.05e-29 115
MS.gene20247.t1 AT3G11440 50.980 102 49 1 5 105 43 144 1.40e-29 117
MS.gene20247.t1 AT4G05100 47.706 109 56 1 5 112 15 123 2.51e-29 114
MS.gene20247.t1 AT1G18710 47.706 109 56 1 5 112 14 122 2.91e-29 113
MS.gene20247.t1 AT3G11440 50.980 102 49 1 5 105 43 144 2.99e-29 117
MS.gene20247.t1 AT3G11440 50.980 102 49 1 5 105 43 144 2.99e-29 117
MS.gene20247.t1 AT3G11440 50.980 102 49 1 5 105 43 144 2.99e-29 117
MS.gene20247.t1 AT3G01140 49.541 109 54 1 5 112 14 122 3.44e-29 114
MS.gene20247.t1 AT5G06100 50.980 102 49 1 5 105 34 135 4.42e-29 116
MS.gene20247.t1 AT5G12870 50.000 106 52 1 5 109 20 125 4.61e-29 113
MS.gene20247.t1 AT3G60460 52.941 102 46 2 5 104 13 114 4.85e-29 113
MS.gene20247.t1 AT3G01140 49.541 109 54 1 5 112 57 165 4.96e-29 115
MS.gene20247.t1 AT5G14750 50.000 102 50 1 5 105 18 119 5.03e-29 110
MS.gene20247.t1 AT5G26660 50.427 117 55 2 5 119 14 129 5.19e-29 114
MS.gene20247.t1 AT1G74430 47.706 109 56 1 5 112 14 122 6.02e-29 112
MS.gene20247.t1 AT1G79180 49.600 125 60 2 5 126 16 140 6.32e-29 113
MS.gene20247.t1 AT1G09540 49.573 117 56 2 5 119 14 129 7.09e-29 114
MS.gene20247.t1 AT5G06100 50.980 102 49 1 5 105 34 135 7.59e-29 116
MS.gene20247.t1 AT5G06100 50.980 102 49 1 5 105 34 135 7.59e-29 116
MS.gene20247.t1 AT5G06100 50.980 102 49 1 5 105 34 135 7.59e-29 116
MS.gene20247.t1 AT5G06100 50.980 102 49 1 5 105 34 135 7.59e-29 116
MS.gene20247.t1 AT1G57560 50.427 117 55 2 5 119 14 129 7.81e-29 112
MS.gene20247.t1 AT3G27920 44.853 136 64 4 5 132 16 148 7.88e-29 111
MS.gene20247.t1 AT3G61250 47.863 117 58 2 5 119 14 129 7.97e-29 112
MS.gene20247.t1 AT5G40330 50.000 102 50 1 5 105 14 115 8.32e-29 110
MS.gene20247.t1 AT5G52600 50.980 102 49 1 5 105 14 115 8.69e-29 110
MS.gene20247.t1 AT3G30210 46.281 121 60 2 5 124 29 145 9.92e-29 112
MS.gene20247.t1 AT1G56160 42.953 149 75 3 5 144 16 163 1.08e-28 112
MS.gene20247.t1 AT1G57560 50.427 117 55 2 5 119 14 129 1.22e-28 112
MS.gene20247.t1 AT5G55020 51.485 101 48 1 5 104 28 128 1.30e-28 115
MS.gene20247.t1 AT1G22640 34.951 206 109 4 5 188 14 216 1.53e-28 111
MS.gene20247.t1 AT1G18570 43.902 123 64 2 5 126 15 133 1.78e-28 113
MS.gene20247.t1 AT4G38620 39.490 157 87 2 5 160 14 163 2.00e-28 111
MS.gene20247.t1 AT5G40360 35.632 174 106 4 5 173 158 330 2.20e-28 112
MS.gene20247.t1 AT4G01680 51.376 109 52 1 5 112 14 122 2.45e-28 110
MS.gene20247.t1 AT2G36890 50.000 108 52 2 5 110 14 121 3.20e-28 111
MS.gene20247.t1 AT4G17785 48.182 110 54 2 5 112 15 123 4.07e-28 112
MS.gene20247.t1 AT1G08810 43.791 153 69 5 5 151 14 155 4.53e-28 110
MS.gene20247.t1 AT4G17785 48.182 110 54 2 5 112 15 123 4.74e-28 112
MS.gene20247.t1 AT1G16490 50.459 109 45 2 5 108 16 120 5.24e-28 110
MS.gene20247.t1 AT2G36890 50.000 108 52 2 5 110 55 162 6.32e-28 111
MS.gene20247.t1 AT5G62470 48.571 105 54 0 5 109 14 118 6.58e-28 111
MS.gene20247.t1 AT4G01680 51.376 109 52 1 5 112 14 122 6.59e-28 111
MS.gene20247.t1 AT4G13480 49.524 105 50 2 5 107 8 111 7.57e-28 109
MS.gene20247.t1 AT3G12720 50.000 110 52 2 5 112 24 132 8.03e-28 110
MS.gene20247.t1 AT4G09460 43.846 130 70 2 5 131 14 143 9.00e-28 108
MS.gene20247.t1 AT5G14340 43.590 117 63 2 5 119 26 141 1.00e-27 109
MS.gene20247.t1 AT1G35515 47.706 109 56 1 5 112 14 122 1.14e-27 107
MS.gene20247.t1 AT2G26960 52.475 101 47 1 5 104 22 122 1.18e-27 112
MS.gene20247.t1 AT3G24310 48.113 106 52 2 5 108 20 124 1.23e-27 108
MS.gene20247.t1 AT3G23250 40.523 153 83 3 5 156 14 159 1.29e-27 109
MS.gene20247.t1 AT1G74080 44.000 125 65 3 5 128 14 134 1.54e-27 110
MS.gene20247.t1 AT4G37780 50.943 106 50 2 5 108 14 119 1.69e-27 109
MS.gene20247.t1 AT4G34990 47.414 116 60 1 5 119 14 129 1.83e-27 108
MS.gene20247.t1 AT5G62470 48.182 110 48 2 5 109 14 119 1.86e-27 110
MS.gene20247.t1 AT2G16720 48.673 113 49 2 5 112 14 122 2.65e-27 108
MS.gene20247.t1 AT3G12820 51.456 103 47 2 5 105 16 117 2.99e-27 107
MS.gene20247.t1 AT3G13890 41.667 132 76 1 5 135 14 145 3.09e-27 109
MS.gene20247.t1 AT4G25560 49.020 102 51 1 5 105 12 113 3.30e-27 108
MS.gene20247.t1 AT3G48920 49.505 101 50 1 5 104 20 120 4.87e-27 107
MS.gene20247.t1 AT3G08500 50.000 102 50 1 5 105 32 133 5.10e-27 108
MS.gene20247.t1 AT3G13540 40.714 140 74 2 1 131 21 160 5.19e-27 107
MS.gene20247.t1 AT1G63910 51.961 102 48 1 5 105 14 115 6.59e-27 108
MS.gene20247.t1 AT5G59780 46.078 102 54 1 5 105 10 111 8.44e-27 105
MS.gene20247.t1 AT5G57620 49.515 103 50 2 5 105 14 116 8.67e-27 108
MS.gene20247.t1 AT3G28470 49.485 97 48 1 5 100 14 110 8.75e-27 107
MS.gene20247.t1 AT1G06180 51.456 103 47 2 5 105 14 115 1.31e-26 105
MS.gene20247.t1 AT5G07700 42.969 128 68 2 5 131 14 137 1.33e-26 107
MS.gene20247.t1 AT5G07700 42.969 128 68 2 5 131 14 137 1.33e-26 107
MS.gene20247.t1 AT3G46130 47.059 102 53 1 5 105 11 112 1.41e-26 105
MS.gene20247.t1 AT5G61420 46.218 119 63 1 5 122 14 132 1.41e-26 108
MS.gene20247.t1 AT2G31180 48.077 104 53 1 5 107 14 117 1.87e-26 105
MS.gene20247.t1 AT5G65790 49.515 103 50 2 5 105 14 116 1.88e-26 107
MS.gene20247.t1 AT5G23000 50.485 103 49 2 5 105 14 116 2.07e-26 107
MS.gene20247.t1 AT3G13890 40.426 141 74 2 5 135 14 154 2.32e-26 107
MS.gene20247.t1 AT5G40350 48.515 101 51 1 5 104 19 119 2.44e-26 103
MS.gene20247.t1 AT3G47600 46.364 110 50 2 5 109 14 119 2.52e-26 107
MS.gene20247.t1 AT1G74650 49.057 106 45 2 5 105 14 115 2.85e-26 106
MS.gene20247.t1 AT4G01680 47.107 121 51 2 5 112 14 134 3.20e-26 106
MS.gene20247.t1 AT5G07690 47.706 109 52 2 5 112 14 118 3.54e-26 106
MS.gene20247.t1 AT3G28910 45.133 113 53 2 5 112 14 122 7.32e-26 105
MS.gene20247.t1 AT1G25340 41.284 109 63 1 5 112 20 128 1.03e-25 104
MS.gene20247.t1 AT1G25340 41.667 108 59 1 5 112 20 123 1.32e-25 103
MS.gene20247.t1 AT3G49690 48.544 103 51 2 5 105 14 116 1.88e-25 103
MS.gene20247.t1 AT1G25340 41.667 108 59 1 5 112 20 123 2.03e-25 103
MS.gene20247.t1 AT4G00540 49.038 104 50 1 5 105 103 206 2.20e-25 105
MS.gene20247.t1 AT3G01530 42.336 137 76 2 5 138 27 163 2.36e-25 101
MS.gene20247.t1 AT3G27810 47.525 101 52 1 5 104 22 122 2.69e-25 101
MS.gene20247.t1 AT4G00540 49.038 104 50 1 5 105 101 204 3.70e-25 105
MS.gene20247.t1 AT2G47190 43.750 112 62 1 2 112 19 130 3.70e-25 102
MS.gene20247.t1 AT4G12350 43.697 119 64 2 5 121 14 131 8.03e-25 101
MS.gene20247.t1 AT4G22680 43.697 119 64 2 5 121 14 131 1.13e-24 100
MS.gene20247.t1 AT3G62610 47.059 102 53 1 5 105 14 115 1.83e-24 102
MS.gene20247.t1 AT1G79180 39.873 158 59 3 5 126 16 173 2.50e-24 101
MS.gene20247.t1 AT3G53200 49.020 102 51 1 5 105 11 112 3.40e-24 99.0
MS.gene20247.t1 AT5G35550 44.118 102 56 1 5 105 16 117 3.84e-24 99.4
MS.gene20247.t1 AT1G66230 42.735 117 64 2 5 119 14 129 5.96e-24 99.4
MS.gene20247.t1 AT5G52260 47.573 103 51 2 5 105 14 115 6.93e-24 99.0
MS.gene20247.t1 AT5G16600 41.270 126 71 2 5 128 14 138 7.27e-24 100
MS.gene20247.t1 AT1G68320 39.450 109 65 1 5 112 21 129 9.13e-24 99.0
MS.gene20247.t1 AT2G25230 44.898 98 52 2 8 104 29 125 1.17e-23 97.4
MS.gene20247.t1 AT2G47460 40.164 122 68 2 5 125 14 131 2.15e-23 99.4
MS.gene20247.t1 AT2G26950 35.714 140 78 3 5 136 18 153 3.27e-23 99.0
MS.gene20247.t1 AT1G48000 39.167 120 71 2 5 123 34 152 5.86e-23 95.9
MS.gene20247.t1 AT5G62320 45.299 117 54 3 5 112 15 130 6.17e-23 95.9
MS.gene20247.t1 AT5G49330 46.078 102 54 1 5 105 14 115 6.37e-23 97.8
MS.gene20247.t1 AT2G02820 40.404 99 59 0 8 106 33 131 3.80e-22 97.1
MS.gene20247.t1 AT2G02820 40.404 99 59 0 8 106 33 131 4.40e-22 96.7
MS.gene20247.t1 AT2G02820 40.816 98 58 0 8 105 33 130 5.01e-22 95.1
MS.gene20247.t1 AT3G06490 41.593 113 65 1 1 112 17 129 5.14e-22 94.7
MS.gene20247.t1 AT5G49620 41.593 113 65 1 1 112 24 136 8.40e-22 94.0
MS.gene20247.t1 AT5G14750 55.882 68 30 0 38 105 18 85 1.31e-21 90.1
MS.gene20247.t1 AT1G14350 36.290 124 78 1 8 130 28 151 2.82e-21 94.0
MS.gene20247.t1 AT1G14350 36.290 124 78 1 8 130 28 151 2.82e-21 94.0
MS.gene20247.t1 AT1G66370 38.983 118 58 3 5 112 10 123 4.40e-21 90.9
MS.gene20247.t1 AT5G26660 52.439 82 39 0 38 119 17 98 1.50e-20 90.9
MS.gene20247.t1 AT3G12820 57.353 68 29 0 38 105 2 69 4.07e-20 86.7
MS.gene20247.t1 AT5G40350 53.731 67 31 0 38 104 8 74 2.54e-19 84.0
MS.gene20247.t1 AT5G59780 50.000 68 34 0 38 105 23 90 3.76e-19 84.7
MS.gene20247.t1 AT3G46130 50.000 68 34 0 38 105 23 90 7.89e-19 84.3
MS.gene20247.t1 AT3G46130 50.000 68 34 0 38 105 13 80 8.10e-19 84.0
MS.gene20247.t1 AT5G40430 38.835 103 62 1 2 104 51 152 9.78e-19 84.3
MS.gene20247.t1 AT1G66380 41.509 106 53 2 5 105 10 111 1.28e-18 81.3
MS.gene20247.t1 AT5G35550 50.000 78 37 1 30 105 43 120 2.07e-18 83.6
MS.gene20247.t1 AT3G27810 52.239 67 32 0 38 104 7 73 2.69e-18 81.6
MS.gene20247.t1 AT5G49620 37.008 127 65 2 1 112 24 150 3.24e-18 84.0
MS.gene20247.t1 AT3G53200 52.941 68 32 0 38 105 12 79 6.40e-18 81.3
MS.gene20247.t1 AT1G56650 37.398 123 65 3 5 119 10 128 6.55e-18 82.0
MS.gene20247.t1 AT1G71030 48.611 72 37 0 41 112 19 90 1.84e-17 79.7
MS.gene20247.t1 AT1G71030 48.611 72 37 0 41 112 5 76 2.05e-17 79.3
MS.gene20247.t1 AT1G66390 40.566 106 54 2 5 105 10 111 4.80e-17 79.7
MS.gene20247.t1 AT1G18960 38.793 116 67 3 5 119 10 122 5.26e-17 80.5
MS.gene20247.t1 AT3G18100 42.553 94 54 0 5 98 546 639 5.63e-17 82.0
MS.gene20247.t1 AT3G18100 42.553 94 54 0 5 98 498 591 6.16e-17 82.0
MS.gene20247.t1 AT3G18100 42.553 94 54 0 5 98 385 478 8.91e-17 81.6
MS.gene20247.t1 AT3G18100 42.553 94 54 0 5 98 333 426 9.31e-17 81.3
MS.gene20247.t1 AT3G47600 51.471 68 33 0 38 105 42 109 2.54e-16 79.0
MS.gene20247.t1 AT1G22640 53.125 64 30 0 49 112 2 65 8.14e-15 72.4
MS.gene20247.t1 AT5G14750 50.000 58 29 0 49 106 2 59 6.07e-14 68.6
MS.gene20247.t1 AT5G14750 50.000 58 29 0 49 106 2 59 6.07e-14 68.6
MS.gene20247.t1 AT2G37630 38.298 94 55 1 8 98 7 100 1.70e-13 70.9
MS.gene20247.t1 AT1G66380 47.059 68 36 0 38 105 11 78 6.99e-13 64.7
MS.gene20247.t1 AT3G23250 37.037 108 61 2 49 156 2 102 1.50e-11 63.5
MS.gene20247.t1 AT4G25560 55.556 45 20 0 61 105 3 47 2.58e-11 62.8

Find 87 sgRNAs with CRISPR-Local

Find 97 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAAGTGCTTCATCTTCTTC+TGG 0.229752 5.1:+8700428 None:intergenic
AATTCTCCCGGTTCTCCTTC+TGG 0.286949 5.1:-8700038 MS.gene20247:CDS
AACTCCGCACTAAAACTAAA+TGG 0.322665 5.1:+8699666 None:intergenic
GGCGGTGGTGGCGGAGGAGG+TGG 0.328429 5.1:+8699774 None:intergenic
ATCAGAGCCCATGCTCGATT+TGG 0.330164 5.1:-8700251 MS.gene20247:CDS
TCGTTATCACTTTCACTTCC+TGG 0.331571 5.1:-8699861 MS.gene20247:CDS
AAATCGATACCGGGCCGGTC+AGG 0.346100 5.1:-8700359 MS.gene20247:CDS
CTTATAATCGACCAGTTTCT+CGG 0.347069 5.1:+8700383 None:intergenic
GGTGGTGGCGGAGGAGGTGG+TGG 0.378626 5.1:+8699777 None:intergenic
GGGATTGCACTTGGCGGTGG+TGG 0.382209 5.1:+8699762 None:intergenic
CTTGGCGGTGGTGGCGGAGG+AGG 0.384829 5.1:+8699771 None:intergenic
AGAAGCACGGGCCGAGAAAC+TGG 0.390908 5.1:-8700394 MS.gene20247:CDS
AATGCTTTGGTGAAGCGAAT+TGG 0.396166 5.1:-8699537 MS.gene20247:CDS
AGAAGGAGAACCGGGAGAAT+TGG 0.404688 5.1:+8700040 None:intergenic
ATTATAGTATCATCCTCTTC+AGG 0.406195 5.1:+8700272 None:intergenic
ATCGGATCCAGAAGGAGAAC+CGG 0.406231 5.1:+8700031 None:intergenic
GCTGCTATTCCTGTTTCTAC+TGG 0.408564 5.1:-8700077 MS.gene20247:CDS
ATTGCACTTGGCGGTGGTGG+CGG 0.409102 5.1:+8699765 None:intergenic
GATTATAAGCAAATCGATAC+CGG 0.413047 5.1:-8700369 MS.gene20247:CDS
TCTTAATAGCGTTATCAGTT+CGG 0.416198 5.1:+8700192 None:intergenic
GCACTTGGCGGTGGTGGCGG+AGG 0.418008 5.1:+8699768 None:intergenic
ATCGGAACCGCCATCGGAAC+AGG 0.421410 5.1:+8699711 None:intergenic
GAGGAGTTACATGGCGGGAT+TGG 0.427475 5.1:-8699607 MS.gene20247:CDS
TCACTTTCACTTCCTGGTGT+TGG 0.437127 5.1:-8699855 MS.gene20247:CDS
TTCACCACAAGTTGAGCATC+GGG 0.439155 5.1:-8700303 MS.gene20247:CDS
ATGCTCGATTTGGAAACAAA+TGG 0.440299 5.1:-8700241 MS.gene20247:CDS
GGTGGTGGTACAGTGTTAAC+AGG 0.444783 5.1:+8699792 None:intergenic
AGTGAAAGTGATAACGAAGT+TGG 0.453529 5.1:+8699867 None:intergenic
TCATCTTCTTCTGGACTCCA+TGG 0.458499 5.1:+8700437 None:intergenic
ATATAAAGACCAGTAGAAAC+AGG 0.460718 5.1:+8700068 None:intergenic
AAGTGCAATCCCTTTGATTC+CGG 0.462668 5.1:-8699751 MS.gene20247:CDS
GGAACAGCCGTAGTCATTAC+CGG 0.463029 5.1:+8699732 None:intergenic
ATAACGCTATTAAGAATCAT+TGG 0.466304 5.1:-8700184 MS.gene20247:CDS
ACTAAATGGCATCACTGATC+CGG 0.467916 5.1:+8699680 None:intergenic
GGATGGAATTAGGAATGCTT+TGG 0.501843 5.1:-8699550 MS.gene20247:CDS
GTCGTTTCTACGAGTGGTAG+AGG 0.505072 5.1:+8699915 None:intergenic
TGCTCGATTTGGAAACAAAT+GGG 0.505863 5.1:-8700240 MS.gene20247:CDS
TTTGATTCCGGTAATGACTA+CGG 0.511896 5.1:-8699739 MS.gene20247:CDS
ATTTGTTTCCAAATCGAGCA+TGG 0.512519 5.1:+8700243 None:intergenic
CATGATTTCCCTGACCGGCC+CGG 0.514477 5.1:+8700350 None:intergenic
CGGGATTGGAGCAACAGAAT+GGG 0.516969 5.1:-8699593 MS.gene20247:CDS
TATATTAACGCCAATTCTCC+CGG 0.517220 5.1:-8700050 MS.gene20247:CDS
ATCTGCATGATTTCCCTGAC+CGG 0.517690 5.1:+8700345 None:intergenic
GCGGTTCCGATGCAACAATC+CGG 0.520179 5.1:-8699699 MS.gene20247:CDS
TACGGCTGTTCCTGTTCCGA+TGG 0.523658 5.1:-8699721 MS.gene20247:CDS
GCGGGATTGGAGCAACAGAA+TGG 0.529381 5.1:-8699594 MS.gene20247:CDS
TGTTGCATCGGAACCGCCAT+CGG 0.532631 5.1:+8699705 None:intergenic
TTTCACCACAAGTTGAGCAT+CGG 0.539872 5.1:-8700304 MS.gene20247:CDS
AAAGGGATTGCACTTGGCGG+TGG 0.540288 5.1:+8699759 None:intergenic
GTAGTCATTACCGGAATCAA+AGG 0.543559 5.1:+8699741 None:intergenic
GCGACGGTTCTCGTTGGCAC+AGG 0.545873 5.1:+8699939 None:intergenic
ATCAAAGGGATTGCACTTGG+CGG 0.547462 5.1:+8699756 None:intergenic
GCCCGATAAAAGCCTGGCTA+TGG 0.547611 5.1:+8700214 None:intergenic
ACAAATGGGCTACCATAGCC+AGG 0.551027 5.1:-8700226 MS.gene20247:CDS
GGAGTTGTTGAGTGTGATGC+AGG 0.552988 5.1:-8699649 MS.gene20247:CDS
TTTGTTTCCAAATCGAGCAT+GGG 0.553033 5.1:+8700244 None:intergenic
AATCGATACCGGGCCGGTCA+GGG 0.554290 5.1:-8700358 MS.gene20247:CDS
GGCTGTTCCTGTTCCGATGG+CGG 0.555350 5.1:-8699718 MS.gene20247:CDS
ACTGATCCGGATTGTTGCAT+CGG 0.562028 5.1:+8699693 None:intergenic
AAAGAAATGGATCGGATCAA+AGG 0.563795 5.1:-8700461 None:intergenic
GGAATCAAAGGGATTGCACT+TGG 0.564789 5.1:+8699753 None:intergenic
GAAAGTGATAACGAAGTTGG+AGG 0.565252 5.1:+8699870 None:intergenic
GAAGAATCGACACCAACACC+AGG 0.574919 5.1:+8699843 None:intergenic
TCGGATCCAGAAGGAGAACC+GGG 0.576563 5.1:+8700032 None:intergenic
AGTTCGGCCCGATAAAAGCC+TGG 0.578285 5.1:+8700208 None:intergenic
TTAACAGAAAAGAAATGGAT+CGG 0.584436 5.1:-8700469 None:intergenic
TAGTCATTACCGGAATCAAA+GGG 0.591280 5.1:+8699742 None:intergenic
TGTTAACAGGCTCAGTTACA+CGG 0.599320 5.1:+8699805 None:intergenic
TTAATATGAGTGTTCACGAT+AGG 0.603916 5.1:+8699990 None:intergenic
TTGAAAAGATCTGTTAGTGC+TGG 0.605131 5.1:-8700101 MS.gene20247:CDS
TGGATCGGATCAAAGGTCCA+TGG 0.609523 5.1:-8700454 MS.gene20247:CDS
TACGAGTGGTAGAGGCGCGA+CGG 0.610707 5.1:+8699923 None:intergenic
CGGTTCTCGTTGGCACAGGT+CGG 0.612535 5.1:+8699943 None:intergenic
GACGACGTCGTTTCTACGAG+TGG 0.617236 5.1:+8699909 None:intergenic
AAAGCCCGATGCTCAACTTG+TGG 0.622271 5.1:+8700299 None:intergenic
AACAGAGGTGAGGAGTTACA+TGG 0.624499 5.1:-8699616 MS.gene20247:CDS
AGAGGCGCGACGGTTCTCGT+TGG 0.636991 5.1:+8699933 None:intergenic
TAAGCAAATCGATACCGGGC+CGG 0.639738 5.1:-8700364 MS.gene20247:CDS
ATTATAAGCAAATCGATACC+GGG 0.640424 5.1:-8700368 MS.gene20247:CDS
GGAAATCATGCAGATTACGT+TGG 0.658062 5.1:-8700337 MS.gene20247:CDS
TCACTCACATCGGATCCAGA+AGG 0.658892 5.1:+8700023 None:intergenic
AGTGTTCACGATAGGTACGC+TGG 0.659015 5.1:+8699998 None:intergenic
GCAGGAGATGATTAGAACAG+AGG 0.661967 5.1:-8699631 MS.gene20247:CDS
GAGGTGAGGAGTTACATGGC+GGG 0.665524 5.1:-8699612 MS.gene20247:CDS
TACGCTGGACTCACTCACAT+CGG 0.668641 5.1:+8700013 None:intergenic
AGATGATTAGAACAGAGGTG+AGG 0.690040 5.1:-8699626 MS.gene20247:CDS
AGAGGTGAGGAGTTACATGG+CGG 0.733534 5.1:-8699613 MS.gene20247:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! ATAACGCTATTAAGAATCAT+TGG - chr5.1:8699786-8699805 MS.gene20247:CDS 25.0%
ATATAAAGACCAGTAGAAAC+AGG + chr5.1:8699905-8699924 None:intergenic 30.0%
ATTATAAGCAAATCGATACC+GGG - chr5.1:8699602-8699621 MS.gene20247:CDS 30.0%
ATTATAGTATCATCCTCTTC+AGG + chr5.1:8699701-8699720 None:intergenic 30.0%
GATTATAAGCAAATCGATAC+CGG - chr5.1:8699601-8699620 MS.gene20247:CDS 30.0%
TCTTAATAGCGTTATCAGTT+CGG + chr5.1:8699781-8699800 None:intergenic 30.0%
TTAATATGAGTGTTCACGAT+AGG + chr5.1:8699983-8700002 None:intergenic 30.0%
AAAAAGCTGAGGATGGAATT+AGG - chr5.1:8700410-8700429 MS.gene20247:CDS 35.0%
AACTCCGCACTAAAACTAAA+TGG + chr5.1:8700307-8700326 None:intergenic 35.0%
ATTTGTTTCCAAATCGAGCA+TGG + chr5.1:8699730-8699749 None:intergenic 35.0%
CTTATAATCGACCAGTTTCT+CGG + chr5.1:8699590-8699609 None:intergenic 35.0%
TAGTCATTACCGGAATCAAA+GGG + chr5.1:8700231-8700250 None:intergenic 35.0%
TATATTAACGCCAATTCTCC+CGG - chr5.1:8699920-8699939 MS.gene20247:CDS 35.0%
TTGAAAAGATCTGTTAGTGC+TGG - chr5.1:8699869-8699888 MS.gene20247:CDS 35.0%
TTTGATTCCGGTAATGACTA+CGG - chr5.1:8700231-8700250 MS.gene20247:CDS 35.0%
TTTGTTTCCAAATCGAGCAT+GGG + chr5.1:8699729-8699748 None:intergenic 35.0%
! AGTGAAAGTGATAACGAAGT+TGG + chr5.1:8700106-8700125 None:intergenic 35.0%
! GATGTGTTTTCAAAAAGCTG+AGG - chr5.1:8700399-8700418 MS.gene20247:CDS 35.0%
! GCACTAACAGATCTTTTCAA+CGG + chr5.1:8699869-8699888 None:intergenic 35.0%
! TGTTTTCAAAAAGCTGAGGA+TGG - chr5.1:8700403-8700422 MS.gene20247:CDS 35.0%
!! ATGCTCGATTTGGAAACAAA+TGG - chr5.1:8699729-8699748 MS.gene20247:CDS 35.0%
!! TGCTCGATTTGGAAACAAAT+GGG - chr5.1:8699730-8699749 MS.gene20247:CDS 35.0%
!!! GATGCCATTTAGTTTTAGTG+CGG - chr5.1:8700300-8700319 MS.gene20247:CDS 35.0%
AAGTGCAATCCCTTTGATTC+CGG - chr5.1:8700219-8700238 MS.gene20247:CDS 40.0%
AATGCTTTGGTGAAGCGAAT+TGG - chr5.1:8700433-8700452 MS.gene20247:CDS 40.0%
ACTAAATGGCATCACTGATC+CGG + chr5.1:8700293-8700312 None:intergenic 40.0%
AGATGATTAGAACAGAGGTG+AGG - chr5.1:8700344-8700363 MS.gene20247:CDS 40.0%
GGAAATCATGCAGATTACGT+TGG - chr5.1:8699633-8699652 MS.gene20247:CDS 40.0%
GGATGGAATTAGGAATGCTT+TGG - chr5.1:8700420-8700439 MS.gene20247:CDS 40.0%
GTAGTCATTACCGGAATCAA+AGG + chr5.1:8700232-8700251 None:intergenic 40.0%
TCGTTATCACTTTCACTTCC+TGG - chr5.1:8700109-8700128 MS.gene20247:CDS 40.0%
TGTTAACAGGCTCAGTTACA+CGG + chr5.1:8700168-8700187 None:intergenic 40.0%
! CTAACAGATCTTTTCAACGG+TGG + chr5.1:8699866-8699885 None:intergenic 40.0%
! GAAAGTGATAACGAAGTTGG+AGG + chr5.1:8700103-8700122 None:intergenic 40.0%
! TACCATAGCCAGGCTTTTAT+CGG - chr5.1:8699754-8699773 MS.gene20247:CDS 40.0%
! TGAAGCACTTCAAAAACTCG+TGG - chr5.1:8699553-8699572 MS.gene20247:CDS 40.0%
! TGAAGTGCTTCATCTTCTTC+TGG + chr5.1:8699545-8699564 None:intergenic 40.0%
! TTTCACCACAAGTTGAGCAT+CGG - chr5.1:8699666-8699685 MS.gene20247:CDS 40.0%
AACAGAGGTGAGGAGTTACA+TGG - chr5.1:8700354-8700373 MS.gene20247:CDS 45.0%
ACTGATCCGGATTGTTGCAT+CGG + chr5.1:8700280-8700299 None:intergenic 45.0%
ATCAAAGGGATTGCACTTGG+CGG + chr5.1:8700217-8700236 None:intergenic 45.0%
ATCTGCATGATTTCCCTGAC+CGG + chr5.1:8699628-8699647 None:intergenic 45.0%
CAAAAACTCGTGGAGAAGCA+CGG - chr5.1:8699563-8699582 MS.gene20247:CDS 45.0%
GCAGGAGATGATTAGAACAG+AGG - chr5.1:8700339-8700358 MS.gene20247:CDS 45.0%
GGAATCAAAGGGATTGCACT+TGG + chr5.1:8700220-8700239 None:intergenic 45.0%
TCACTTTCACTTCCTGGTGT+TGG - chr5.1:8700115-8700134 MS.gene20247:CDS 45.0%
TCATCTTCTTCTGGACTCCA+TGG + chr5.1:8699536-8699555 None:intergenic 45.0%
! AAAAACTCGTGGAGAAGCAC+GGG - chr5.1:8699564-8699583 MS.gene20247:CDS 45.0%
! ACCATAGCCAGGCTTTTATC+GGG - chr5.1:8699755-8699774 MS.gene20247:CDS 45.0%
! TTCACCACAAGTTGAGCATC+GGG - chr5.1:8699667-8699686 MS.gene20247:CDS 45.0%
!! GCTGCTATTCCTGTTTCTAC+TGG - chr5.1:8699893-8699912 MS.gene20247:CDS 45.0%
AAAGCCCGATGCTCAACTTG+TGG + chr5.1:8699674-8699693 None:intergenic 50.0%
AATTCTCCCGGTTCTCCTTC+TGG - chr5.1:8699932-8699951 MS.gene20247:CDS 50.0%
AGAAGGAGAACCGGGAGAAT+TGG + chr5.1:8699933-8699952 None:intergenic 50.0%
AGAGGTGAGGAGTTACATGG+CGG - chr5.1:8700357-8700376 MS.gene20247:CDS 50.0%
AGTGTTCACGATAGGTACGC+TGG + chr5.1:8699975-8699994 None:intergenic 50.0%
ATCAGAGCCCATGCTCGATT+TGG - chr5.1:8699719-8699738 MS.gene20247:CDS 50.0%
ATCGGATCCAGAAGGAGAAC+CGG + chr5.1:8699942-8699961 None:intergenic 50.0%
CGGGATTGGAGCAACAGAAT+GGG - chr5.1:8700377-8700396 MS.gene20247:CDS 50.0%
GAAGAATCGACACCAACACC+AGG + chr5.1:8700130-8700149 None:intergenic 50.0%
GGAACAGCCGTAGTCATTAC+CGG + chr5.1:8700241-8700260 None:intergenic 50.0%
GGAGTTGTTGAGTGTGATGC+AGG - chr5.1:8700321-8700340 MS.gene20247:CDS 50.0%
GTCGTTTCTACGAGTGGTAG+AGG + chr5.1:8700058-8700077 None:intergenic 50.0%
TAAGCAAATCGATACCGGGC+CGG - chr5.1:8699606-8699625 MS.gene20247:CDS 50.0%
TACGCTGGACTCACTCACAT+CGG + chr5.1:8699960-8699979 None:intergenic 50.0%
TCACTCACATCGGATCCAGA+AGG + chr5.1:8699950-8699969 None:intergenic 50.0%
TGGATCGGATCAAAGGTCCA+TGG - chr5.1:8699516-8699535 MS.gene20247:CDS 50.0%
! GGTGGTGGTACAGTGTTAAC+AGG + chr5.1:8700181-8700200 None:intergenic 50.0%
!! ACAAATGGGCTACCATAGCC+AGG - chr5.1:8699744-8699763 MS.gene20247:CDS 50.0%
AAAGGGATTGCACTTGGCGG+TGG + chr5.1:8700214-8700233 None:intergenic 55.0%
AGTTCGGCCCGATAAAAGCC+TGG + chr5.1:8699765-8699784 None:intergenic 55.0%
GACGACGTCGTTTCTACGAG+TGG + chr5.1:8700064-8700083 None:intergenic 55.0%
GAGGTGAGGAGTTACATGGC+GGG - chr5.1:8700358-8700377 MS.gene20247:CDS 55.0%
GCCCGATAAAAGCCTGGCTA+TGG + chr5.1:8699759-8699778 None:intergenic 55.0%
GCGGGATTGGAGCAACAGAA+TGG - chr5.1:8700376-8700395 MS.gene20247:CDS 55.0%
GCGGTTCCGATGCAACAATC+CGG - chr5.1:8700271-8700290 MS.gene20247:CDS 55.0%
TACGGCTGTTCCTGTTCCGA+TGG - chr5.1:8700249-8700268 MS.gene20247:CDS 55.0%
TCGGATCCAGAAGGAGAACC+GGG + chr5.1:8699941-8699960 None:intergenic 55.0%
TGTTGCATCGGAACCGCCAT+CGG + chr5.1:8700268-8700287 None:intergenic 55.0%
! GAGGAGTTACATGGCGGGAT+TGG - chr5.1:8700363-8700382 MS.gene20247:CDS 55.0%
! TCGGGCTTTTACGCCTGAAG+AGG - chr5.1:8699685-8699704 MS.gene20247:CDS 55.0%
AAATCGATACCGGGCCGGTC+AGG - chr5.1:8699611-8699630 MS.gene20247:CDS 60.0%
AATCGATACCGGGCCGGTCA+GGG - chr5.1:8699612-8699631 MS.gene20247:CDS 60.0%
ATCGGAACCGCCATCGGAAC+AGG + chr5.1:8700262-8700281 None:intergenic 60.0%
CATGATTTCCCTGACCGGCC+CGG + chr5.1:8699623-8699642 None:intergenic 60.0%
CGGTTCTCGTTGGCACAGGT+CGG + chr5.1:8700030-8700049 None:intergenic 60.0%
GGCTGTTCCTGTTCCGATGG+CGG - chr5.1:8700252-8700271 MS.gene20247:CDS 60.0%
! AGAAGCACGGGCCGAGAAAC+TGG - chr5.1:8699576-8699595 MS.gene20247:CDS 60.0%
! ATTGCACTTGGCGGTGGTGG+CGG + chr5.1:8700208-8700227 None:intergenic 60.0%
! TACGAGTGGTAGAGGCGCGA+CGG + chr5.1:8700050-8700069 None:intergenic 60.0%
GCGACGGTTCTCGTTGGCAC+AGG + chr5.1:8700034-8700053 None:intergenic 65.0%
GGGATTGCACTTGGCGGTGG+TGG + chr5.1:8700211-8700230 None:intergenic 65.0%
! AGAGGCGCGACGGTTCTCGT+TGG + chr5.1:8700040-8700059 None:intergenic 65.0%
!! CTTGGCGGTGGTGGCGGAGG+AGG + chr5.1:8700202-8700221 None:intergenic 75.0%
!! GCACTTGGCGGTGGTGGCGG+AGG + chr5.1:8700205-8700224 None:intergenic 75.0%
!! GGTGGTGGCGGAGGAGGTGG+TGG + chr5.1:8700196-8700215 None:intergenic 75.0%
!!! GGCGGTGGTGGCGGAGGAGG+TGG + chr5.1:8700199-8700218 None:intergenic 80.0%


Chromosome Type Strat End Strand Name
chr5.1 gene 8699515 8700477 8699515 ID=MS.gene20247
chr5.1 mRNA 8699515 8700477 8699515 ID=MS.gene20247.t1;Parent=MS.gene20247
chr5.1 exon 8699515 8700477 8699515 ID=MS.gene20247.t1.exon1;Parent=MS.gene20247.t1
chr5.1 CDS 8699515 8700477 8699515 ID=cds.MS.gene20247.t1;Parent=MS.gene20247.t1
Gene Sequence

>MS.gene20247

ATGGATCGGATCAAAGGTCCATGGAGTCCAGAAGAAGATGAAGCACTTCAAAAACTCGTGGAGAAGCACGGGCCGAGAAACTGGTCGATTATAAGCAAATCGATACCGGGCCGGTCAGGGAAATCATGCAGATTACGTTGGTGTAATCAGCTTTCACCACAAGTTGAGCATCGGGCTTTTACGCCTGAAGAGGATGATACTATAATCAGAGCCCATGCTCGATTTGGAAACAAATGGGCTACCATAGCCAGGCTTTTATCGGGCCGAACTGATAACGCTATTAAGAATCATTGGAACTCTACTTTGAAACGTAAGTGTTCTTCTATTATGATTGATGATTCTGAATCTCCACCGTTGAAAAGATCTGTTAGTGCTGGTGCTGCTATTCCTGTTTCTACTGGTCTTTATATTAACGCCAATTCTCCCGGTTCTCCTTCTGGATCCGATGTGAGTGAGTCCAGCGTACCTATCGTGAACACTCATATTAACTCTCATGTAAACTCTCATGTTTACCGACCTGTGCCAACGAGAACCGTCGCGCCTCTACCACTCGTAGAAACGACGTCGTCTTCGAAATCAAACGATCCTCCAACTTCGTTATCACTTTCACTTCCTGGTGTTGGTGTCGATTCTTCTTCTGAAGATTCAAACCGTGTAACTGAGCCTGTTAACACTGTACCACCACCTCCTCCGCCACCACCGCCAAGTGCAATCCCTTTGATTCCGGTAATGACTACGGCTGTTCCTGTTCCGATGGCGGTTCCGATGCAACAATCCGGATCAGTGATGCCATTTAGTTTTAGTGCGGAGTTGTTGAGTGTGATGCAGGAGATGATTAGAACAGAGGTGAGGAGTTACATGGCGGGATTGGAGCAACAGAATGGGATGTGTTTTCAAAAAGCTGAGGATGGAATTAGGAATGCTTTGGTGAAGCGAATTGGAATTAGCAGAATCGATTCGTAA
Protein sequence

>MS.gene20247.t1

MDRIKGPWSPEEDEALQKLVEKHGPRNWSIISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDDTIIRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSSIMIDDSESPPLKRSVSAGAAIPVSTGLYINANSPGSPSGSDVSESSVPIVNTHINSHVNSHVYRPVPTRTVAPLPLVETTSSSKSNDPPTSLSLSLPGVGVDSSSEDSNRVTEPVNTVPPPPPPPPPSAIPLIPVMTTAVPVPMAVPMQQSGSVMPFSFSAELLSVMQEMIRTEVRSYMAGLEQQNGMCFQKAEDGIRNALVKRIGISRIDS