Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20284.t1 | KEH27507.1 | 97.2 | 286 | 8 | 0 | 1 | 286 | 47 | 332 | 1.20E-164 | 589 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20284.t1 | O64815 | 70.7 | 287 | 81 | 1 | 2 | 285 | 126 | 412 | 2.7e-120 | 433.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20284.t1 | G7K3U7 | 97.2 | 286 | 8 | 0 | 1 | 286 | 118 | 403 | 8.8e-165 | 589.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene20284.t1 | TR | GNAT |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20284.t1 | MTR_5g015810 | 97.203 | 286 | 8 | 0 | 1 | 286 | 118 | 403 | 0.0 | 580 |
| MS.gene20284.t1 | MTR_5g015810 | 97.203 | 286 | 8 | 0 | 1 | 286 | 47 | 332 | 0.0 | 577 |
| MS.gene20284.t1 | MTR_5g015810 | 97.203 | 286 | 8 | 0 | 1 | 286 | 1 | 286 | 0.0 | 574 |
| MS.gene20284.t1 | MTR_4g095700 | 71.972 | 289 | 77 | 3 | 1 | 285 | 122 | 410 | 2.21e-156 | 442 |
| MS.gene20284.t1 | MTR_4g007130 | 48.288 | 292 | 138 | 5 | 2 | 285 | 122 | 408 | 3.32e-88 | 269 |
| MS.gene20284.t1 | MTR_3g465010 | 47.059 | 289 | 142 | 4 | 2 | 286 | 107 | 388 | 1.04e-80 | 249 |
| MS.gene20284.t1 | MTR_4g122030 | 31.034 | 290 | 139 | 8 | 2 | 285 | 115 | 349 | 2.40e-29 | 114 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20284.t1 | AT2G23060 | 70.486 | 288 | 82 | 1 | 1 | 285 | 125 | 412 | 7.02e-150 | 426 |
| MS.gene20284.t1 | AT2G23060 | 70.251 | 279 | 80 | 1 | 11 | 286 | 1 | 279 | 8.47e-146 | 410 |
| MS.gene20284.t1 | AT4G37580 | 68.056 | 288 | 89 | 1 | 1 | 285 | 58 | 345 | 4.00e-142 | 404 |
| MS.gene20284.t1 | AT4G37580 | 68.056 | 288 | 89 | 1 | 1 | 285 | 115 | 402 | 2.66e-141 | 404 |
| MS.gene20284.t1 | AT5G67430 | 62.937 | 286 | 96 | 4 | 1 | 286 | 46 | 321 | 2.57e-129 | 370 |
| MS.gene20284.t1 | AT5G67430 | 62.937 | 286 | 96 | 4 | 1 | 286 | 111 | 386 | 1.45e-128 | 371 |
| MS.gene20284.t1 | AT2G30090 | 42.857 | 294 | 143 | 6 | 2 | 286 | 109 | 386 | 7.21e-67 | 213 |
Find 72 sgRNAs with CRISPR-Local
Find 101 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTAAAATGACACGTATTT+TGG | 0.110291 | 5.1:-8199405 | MS.gene20284:CDS |
| TTAACCATCTTCACCTTCTT+TGG | 0.150962 | 5.1:+8199290 | None:intergenic |
| TATCTTGTGCTAATGATTTA+TGG | 0.159818 | 5.1:-8199154 | MS.gene20284:CDS |
| CCGGATTTGTTTAGGCCTTT+TGG | 0.177590 | 5.1:-8199347 | MS.gene20284:CDS |
| TGGCCCAGATAGGTTTCTTT+TGG | 0.229875 | 5.1:-8199522 | MS.gene20284:CDS |
| TTGTGGGTTTGCGCATAATT+TGG | 0.260941 | 5.1:-8199261 | MS.gene20284:CDS |
| TAACCATCTTCACCTTCTTT+GGG | 0.322009 | 5.1:+8199291 | None:intergenic |
| AGAACAGCGTCAATGTCATT+AGG | 0.331188 | 5.1:+8199614 | None:intergenic |
| CTTAATAACAAACTTAATCT+AGG | 0.336122 | 5.1:-8199593 | MS.gene20284:CDS |
| GGAATGTGGGTGTGGGGTTG+TGG | 0.340015 | 5.1:-8199234 | MS.gene20284:CDS |
| TTTGGACCCACCTTGTTCTT+GGG | 0.345593 | 5.1:-8199504 | MS.gene20284:CDS |
| TGGCTATGGAATGTGGGTGT+GGG | 0.346396 | 5.1:-8199241 | MS.gene20284:CDS |
| TTGGCTATGGAATGTGGGTG+TGG | 0.357803 | 5.1:-8199242 | MS.gene20284:CDS |
| CGTCGGTTCCGGATTTGTTT+AGG | 0.361537 | 5.1:-8199355 | MS.gene20284:CDS |
| CGGCGCTGAATATTCATATA+TGG | 0.362736 | 5.1:-8199837 | MS.gene20284:CDS |
| GGGTCCAAAAGAAACCTATC+TGG | 0.369698 | 5.1:+8199518 | None:intergenic |
| GTTGAAGGTACCGTCGGTTC+CGG | 0.377354 | 5.1:-8199366 | MS.gene20284:CDS |
| TTTGTTCTGTGAGCATAAAC+GGG | 0.400112 | 5.1:+8199725 | None:intergenic |
| CCGGGCTTTGCCGTGGTTGA+AGG | 0.401375 | 5.1:-8199381 | MS.gene20284:CDS |
| TGAGGTTTGGTATACCTCAT+TGG | 0.402328 | 5.1:-8199184 | MS.gene20284:CDS |
| TGGTGCAGGAGAATGGGAAT+AGG | 0.414994 | 5.1:-8199902 | None:intergenic |
| GAACAGCGTCAATGTCATTA+GGG | 0.415763 | 5.1:+8199615 | None:intergenic |
| GGCGCGTCGCGTGTCAAGCG+CGG | 0.428563 | 5.1:-8199431 | MS.gene20284:CDS |
| AAGATGGTTAAGGCCCTTTG+TGG | 0.430907 | 5.1:-8199278 | MS.gene20284:CDS |
| GCGCGTCGCGTGTCAAGCGC+GGG | 0.431919 | 5.1:-8199430 | MS.gene20284:CDS |
| GGCTATGGAATGTGGGTGTG+GGG | 0.449265 | 5.1:-8199240 | MS.gene20284:CDS |
| GGTGCAGGAGAATGGGAATA+GGG | 0.455976 | 5.1:-8199901 | None:intergenic |
| TGACGAGAATTGACGGTGTA+CGG | 0.468550 | 5.1:+8199750 | None:intergenic |
| TCATGTGAACCATTGAGGTT+TGG | 0.476876 | 5.1:-8199197 | MS.gene20284:CDS |
| TACAGTGTCAAAACATGGCC+TGG | 0.491753 | 5.1:-8199542 | MS.gene20284:CDS |
| AGATGGTTAAGGCCCTTTGT+GGG | 0.493646 | 5.1:-8199277 | MS.gene20284:CDS |
| CATAATTTGGCTATGGAATG+TGG | 0.501628 | 5.1:-8199248 | MS.gene20284:CDS |
| AAGTGTTTGGAATTCTAAAG+AGG | 0.505817 | 5.1:-8199474 | MS.gene20284:CDS |
| CCAAAAGGCCTAAACAAATC+CGG | 0.512387 | 5.1:+8199347 | None:intergenic |
| GATTGGACTAAGTCTATGCC+AGG | 0.513880 | 5.1:-8199086 | MS.gene20284:CDS |
| AAAGAAGGTGAAGATGGTTA+AGG | 0.518056 | 5.1:-8199288 | MS.gene20284:CDS |
| GTGATGGTTCTATCGGTGAT+TGG | 0.518824 | 5.1:-8199103 | MS.gene20284:CDS |
| CCTTCAACCACGGCAAAGCC+CGG | 0.518891 | 5.1:+8199381 | None:intergenic |
| TTGCTTCATGTGAACCATTG+AGG | 0.519399 | 5.1:-8199202 | MS.gene20284:CDS |
| ACGGCGTCAGAAGGAGTTAA+CGG | 0.524819 | 5.1:+8199677 | None:intergenic |
| CTTGTTGATGATTATAGTGA+TGG | 0.527363 | 5.1:-8199119 | MS.gene20284:CDS |
| ACCGACGGTACCTTCAACCA+CGG | 0.534359 | 5.1:+8199371 | None:intergenic |
| AAACATGGCCTGGCCCAGAT+AGG | 0.535009 | 5.1:-8199532 | MS.gene20284:CDS |
| TAGAATATAACGGCGTCAGA+AGG | 0.539306 | 5.1:+8199668 | None:intergenic |
| AAAAGAAACCTATCTGGGCC+AGG | 0.540432 | 5.1:+8199524 | None:intergenic |
| GTTTGCGCATAATTTGGCTA+TGG | 0.547310 | 5.1:-8199255 | MS.gene20284:CDS |
| ACGACTTCTTAAATCTCTCT+AGG | 0.550839 | 5.1:+8199044 | None:intergenic |
| AATTATGCGCAAACCCACAA+AGG | 0.552012 | 5.1:+8199264 | None:intergenic |
| AGAAGGAGTTAACGGAATGA+TGG | 0.559153 | 5.1:+8199685 | None:intergenic |
| TGAGGTATACCAAACCTCAA+TGG | 0.563011 | 5.1:+8199188 | None:intergenic |
| ACGGGGTTGACGAGAATTGA+CGG | 0.566648 | 5.1:+8199743 | None:intergenic |
| AAAACTCTACGGTAGAGAAA+CGG | 0.566914 | 5.1:+8199639 | None:intergenic |
| GTGTGGGGTTGTGGCTACTG+AGG | 0.570076 | 5.1:-8199225 | MS.gene20284:CDS |
| GCCGTGGTTGAAGGTACCGT+CGG | 0.570164 | 5.1:-8199372 | MS.gene20284:CDS |
| ATTATGCGCAAACCCACAAA+GGG | 0.571069 | 5.1:+8199265 | None:intergenic |
| ACTGTAGGACCCACTTGGTA+CGG | 0.571473 | 5.1:+8199559 | None:intergenic |
| TTGACACTGTAGGACCCACT+TGG | 0.573131 | 5.1:+8199554 | None:intergenic |
| TGAATATTCATATATGGCAA+CGG | 0.574189 | 5.1:-8199831 | MS.gene20284:CDS |
| GAGGCATGGTTTAAAGATAA+CGG | 0.582283 | 5.1:-8199857 | MS.gene20284:CDS |
| CTACGGTAGAGAAACGGTTA+CGG | 0.585607 | 5.1:+8199645 | None:intergenic |
| GATTATAGTGATGGTTCTAT+CGG | 0.586828 | 5.1:-8199110 | MS.gene20284:CDS |
| AGGCCCAAAGAAGGTGAAGA+TGG | 0.590583 | 5.1:-8199294 | MS.gene20284:CDS |
| GGTCCAAAAGAAACCTATCT+GGG | 0.592928 | 5.1:+8199519 | None:intergenic |
| ACGGTTACGGTAGAATATAA+CGG | 0.610597 | 5.1:+8199658 | None:intergenic |
| CTTAAAATAGCCCAAGAACA+AGG | 0.618666 | 5.1:+8199494 | None:intergenic |
| ATAATTTGGCTATGGAATGT+GGG | 0.630129 | 5.1:-8199247 | MS.gene20284:CDS |
| AAATAGCCCAAGAACAAGGT+GGG | 0.635584 | 5.1:+8199498 | None:intergenic |
| CTAAACAAATCCGGAACCGA+CGG | 0.646252 | 5.1:+8199356 | None:intergenic |
| GGTCCTACAGTGTCAAAACA+TGG | 0.647080 | 5.1:-8199547 | MS.gene20284:CDS |
| AAAATAGCCCAAGAACAAGG+TGG | 0.667856 | 5.1:+8199497 | None:intergenic |
| TTGTTCTGTGAGCATAAACG+GGG | 0.686756 | 5.1:+8199726 | None:intergenic |
| ATTGGACTAAGTCTATGCCA+GGG | 0.702872 | 5.1:-8199085 | MS.gene20284:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTTAATAACAAACTTAATCT+AGG | - | chr5.1:8199349-8199368 | MS.gene20284:CDS | 20.0% |
| ! | TACAAAAAATGAAACCCAAA+AGG | + | chr5.1:8199613-8199632 | None:intergenic | 25.0% |
| ! | TATCTTGTGCTAATGATTTA+TGG | - | chr5.1:8199788-8199807 | MS.gene20284:CDS | 25.0% |
| ! | TGAATATTCATATATGGCAA+CGG | - | chr5.1:8199111-8199130 | MS.gene20284:CDS | 25.0% |
| !!! | TTGGGTTTCATTTTTTGTAT+GGG | - | chr5.1:8199614-8199633 | MS.gene20284:CDS | 25.0% |
| !!! | TTTAACGGATGCTAAATTTT+CGG | + | chr5.1:8199140-8199159 | None:intergenic | 25.0% |
| !!! | TTTGGGTTTCATTTTTTGTA+TGG | - | chr5.1:8199613-8199632 | MS.gene20284:CDS | 25.0% |
| !!! | TTTTTCAGTGAAGAGTTTAA+CGG | + | chr5.1:8199155-8199174 | None:intergenic | 25.0% |
| AAACTCTTCACTGAAAAATG+CGG | - | chr5.1:8199157-8199176 | MS.gene20284:CDS | 30.0% | |
| ATAATTTGGCTATGGAATGT+GGG | - | chr5.1:8199695-8199714 | MS.gene20284:CDS | 30.0% | |
| GTTGAAGCTAGTGAAAAAAA+TGG | - | chr5.1:8199063-8199082 | MS.gene20284:CDS | 30.0% | |
| ! | AAGTGTTTGGAATTCTAAAG+AGG | - | chr5.1:8199468-8199487 | MS.gene20284:CDS | 30.0% |
| ! | GATTATAGTGATGGTTCTAT+CGG | - | chr5.1:8199832-8199851 | MS.gene20284:CDS | 30.0% |
| ! | TGCTAAAATGACACGTATTT+TGG | - | chr5.1:8199537-8199556 | MS.gene20284:CDS | 30.0% |
| ! | TTTTGTTCTGTGAGCATAAA+CGG | + | chr5.1:8199221-8199240 | None:intergenic | 30.0% |
| !! | CTTGTTGATGATTATAGTGA+TGG | - | chr5.1:8199823-8199842 | MS.gene20284:CDS | 30.0% |
| !!! | TTCATTTTTTGTATGGGCTT+GGG | - | chr5.1:8199620-8199639 | MS.gene20284:CDS | 30.0% |
| !!! | TTTCATTTTTTGTATGGGCT+TGG | - | chr5.1:8199619-8199638 | MS.gene20284:CDS | 30.0% |
| AAAACTCTACGGTAGAGAAA+CGG | + | chr5.1:8199306-8199325 | None:intergenic | 35.0% | |
| AAAGAAGGTGAAGATGGTTA+AGG | - | chr5.1:8199654-8199673 | MS.gene20284:CDS | 35.0% | |
| ACGGTTACGGTAGAATATAA+CGG | + | chr5.1:8199287-8199306 | None:intergenic | 35.0% | |
| CATAATTTGGCTATGGAATG+TGG | - | chr5.1:8199694-8199713 | MS.gene20284:CDS | 35.0% | |
| CTTAAAATAGCCCAAGAACA+AGG | + | chr5.1:8199451-8199470 | None:intergenic | 35.0% | |
| GAAGCTAGTGAAAAAAATGG+AGG | - | chr5.1:8199066-8199085 | MS.gene20284:CDS | 35.0% | |
| GAGGCATGGTTTAAAGATAA+CGG | - | chr5.1:8199085-8199104 | MS.gene20284:CDS | 35.0% | |
| GTCATTAGGGAAAAACTCTA+CGG | + | chr5.1:8199317-8199336 | None:intergenic | 35.0% | |
| TAACCATCTTCACCTTCTTT+GGG | + | chr5.1:8199654-8199673 | None:intergenic | 35.0% | |
| TAGTGAAAAAAATGGAGGCA+TGG | - | chr5.1:8199071-8199090 | MS.gene20284:CDS | 35.0% | |
| TTAACCATCTTCACCTTCTT+TGG | + | chr5.1:8199655-8199674 | None:intergenic | 35.0% | |
| TTTGTTCTGTGAGCATAAAC+GGG | + | chr5.1:8199220-8199239 | None:intergenic | 35.0% | |
| ! | CAAGATAGCATTTTCCAATG+AGG | + | chr5.1:8199775-8199794 | None:intergenic | 35.0% |
| !! | AAATGACACGTATTTTGGAC+CGG | - | chr5.1:8199542-8199561 | MS.gene20284:CDS | 35.0% |
| !! | CTTGGGCTATTTTAAGTGTT+TGG | - | chr5.1:8199455-8199474 | MS.gene20284:CDS | 35.0% |
| !! | TAAAGAGGTTTTTAAGCTCG+AGG | - | chr5.1:8199483-8199502 | MS.gene20284:CDS | 35.0% |
| !!! | TCATTTTTTGTATGGGCTTG+GGG | - | chr5.1:8199621-8199640 | MS.gene20284:CDS | 35.0% |
| AAAATAGCCCAAGAACAAGG+TGG | + | chr5.1:8199448-8199467 | None:intergenic | 40.0% | |
| AAATAGCCCAAGAACAAGGT+GGG | + | chr5.1:8199447-8199466 | None:intergenic | 40.0% | |
| AATTATGCGCAAACCCACAA+AGG | + | chr5.1:8199681-8199700 | None:intergenic | 40.0% | |
| AGAACAGCGTCAATGTCATT+AGG | + | chr5.1:8199331-8199350 | None:intergenic | 40.0% | |
| AGAAGGAGTTAACGGAATGA+TGG | + | chr5.1:8199260-8199279 | None:intergenic | 40.0% | |
| ATTATGCGCAAACCCACAAA+GGG | + | chr5.1:8199680-8199699 | None:intergenic | 40.0% | |
| ATTGGACTAAGTCTATGCCA+GGG | - | chr5.1:8199857-8199876 | MS.gene20284:CDS | 40.0% | |
| CCAAAAGGCCTAAACAAATC+CGG | + | chr5.1:8199598-8199617 | None:intergenic | 40.0% | |
| GAACAGCGTCAATGTCATTA+GGG | + | chr5.1:8199330-8199349 | None:intergenic | 40.0% | |
| GGTCCAAAAGAAACCTATCT+GGG | + | chr5.1:8199426-8199445 | None:intergenic | 40.0% | |
| GTTTGCGCATAATTTGGCTA+TGG | - | chr5.1:8199687-8199706 | MS.gene20284:CDS | 40.0% | |
| TAGAATATAACGGCGTCAGA+AGG | + | chr5.1:8199277-8199296 | None:intergenic | 40.0% | |
| TCATGTGAACCATTGAGGTT+TGG | - | chr5.1:8199745-8199764 | MS.gene20284:CDS | 40.0% | |
| TGAGGTATACCAAACCTCAA+TGG | + | chr5.1:8199757-8199776 | None:intergenic | 40.0% | |
| TTGCTTCATGTGAACCATTG+AGG | - | chr5.1:8199740-8199759 | MS.gene20284:CDS | 40.0% | |
| TTGTGGGTTTGCGCATAATT+TGG | - | chr5.1:8199681-8199700 | MS.gene20284:CDS | 40.0% | |
| TTGTTCTGTGAGCATAAACG+GGG | + | chr5.1:8199219-8199238 | None:intergenic | 40.0% | |
| ! | CGGCGCTGAATATTCATATA+TGG | - | chr5.1:8199105-8199124 | MS.gene20284:CDS | 40.0% |
| ! | TGAGGTTTGGTATACCTCAT+TGG | - | chr5.1:8199758-8199777 | MS.gene20284:CDS | 40.0% |
| !! | AATGACACGTATTTTGGACC+GGG | - | chr5.1:8199543-8199562 | MS.gene20284:CDS | 40.0% |
| !! | CGGATTTGTTTAGGCCTTTT+GGG | - | chr5.1:8199596-8199615 | MS.gene20284:CDS | 40.0% |
| !! | CTCTCTAGGATCCACAAAAA+TGG | + | chr5.1:8199887-8199906 | None:intergenic | 40.0% |
| !!! | CATTTTTTGTATGGGCTTGG+GGG | - | chr5.1:8199622-8199641 | MS.gene20284:CDS | 40.0% |
| AAAAGAAACCTATCTGGGCC+AGG | + | chr5.1:8199421-8199440 | None:intergenic | 45.0% | |
| AAGATGGTTAAGGCCCTTTG+TGG | - | chr5.1:8199664-8199683 | MS.gene20284:CDS | 45.0% | |
| AGATGGTTAAGGCCCTTTGT+GGG | - | chr5.1:8199665-8199684 | MS.gene20284:CDS | 45.0% | |
| CTAAACAAATCCGGAACCGA+CGG | + | chr5.1:8199589-8199608 | None:intergenic | 45.0% | |
| CTACGGTAGAGAAACGGTTA+CGG | + | chr5.1:8199300-8199319 | None:intergenic | 45.0% | |
| GATTGGACTAAGTCTATGCC+AGG | - | chr5.1:8199856-8199875 | MS.gene20284:CDS | 45.0% | |
| GGGTCCAAAAGAAACCTATC+TGG | + | chr5.1:8199427-8199446 | None:intergenic | 45.0% | |
| GGTCCTACAGTGTCAAAACA+TGG | - | chr5.1:8199395-8199414 | MS.gene20284:CDS | 45.0% | |
| TACAGTGTCAAAACATGGCC+TGG | - | chr5.1:8199400-8199419 | MS.gene20284:CDS | 45.0% | |
| TCCACAAAAATGGAGATCCC+TGG | + | chr5.1:8199877-8199896 | None:intergenic | 45.0% | |
| TGACGAGAATTGACGGTGTA+CGG | + | chr5.1:8199195-8199214 | None:intergenic | 45.0% | |
| TTTGGACCCACCTTGTTCTT+GGG | - | chr5.1:8199438-8199457 | MS.gene20284:CDS | 45.0% | |
| ! | ACTTTTCTTGCCGTACCAAG+TGG | - | chr5.1:8199373-8199392 | MS.gene20284:CDS | 45.0% |
| ! | CTTTTCTTGCCGTACCAAGT+GGG | - | chr5.1:8199374-8199393 | MS.gene20284:CDS | 45.0% |
| ! | GTGATGGTTCTATCGGTGAT+TGG | - | chr5.1:8199839-8199858 | MS.gene20284:CDS | 45.0% |
| ! | TGGCCCAGATAGGTTTCTTT+TGG | - | chr5.1:8199420-8199439 | MS.gene20284:CDS | 45.0% |
| ! | TTTTGGACCCACCTTGTTCT+TGG | - | chr5.1:8199437-8199456 | MS.gene20284:CDS | 45.0% |
| !! | CCGGATTTGTTTAGGCCTTT+TGG | - | chr5.1:8199595-8199614 | MS.gene20284:CDS | 45.0% |
| !! | GTTTTTAAGCTCGAGGTACG+TGG | - | chr5.1:8199490-8199509 | MS.gene20284:CDS | 45.0% |
| !!! | AGGCCATGTTTTGACACTGT+AGG | + | chr5.1:8199401-8199420 | None:intergenic | 45.0% |
| ACGGCGTCAGAAGGAGTTAA+CGG | + | chr5.1:8199268-8199287 | None:intergenic | 50.0% | |
| ACGGGGTTGACGAGAATTGA+CGG | + | chr5.1:8199202-8199221 | None:intergenic | 50.0% | |
| ACTGTAGGACCCACTTGGTA+CGG | + | chr5.1:8199386-8199405 | None:intergenic | 50.0% | |
| AGGCCCAAAGAAGGTGAAGA+TGG | - | chr5.1:8199648-8199667 | MS.gene20284:CDS | 50.0% | |
| TGGCTATGGAATGTGGGTGT+GGG | - | chr5.1:8199701-8199720 | MS.gene20284:CDS | 50.0% | |
| TTGACACTGTAGGACCCACT+TGG | + | chr5.1:8199391-8199410 | None:intergenic | 50.0% | |
| TTGGCTATGGAATGTGGGTG+TGG | - | chr5.1:8199700-8199719 | MS.gene20284:CDS | 50.0% | |
| !! | CGTCGGTTCCGGATTTGTTT+AGG | - | chr5.1:8199587-8199606 | MS.gene20284:CDS | 50.0% |
| !! | GCCAGGGATCTCCATTTTTG+TGG | - | chr5.1:8199873-8199892 | MS.gene20284:CDS | 50.0% |
| AAACATGGCCTGGCCCAGAT+AGG | - | chr5.1:8199410-8199429 | MS.gene20284:CDS | 55.0% | |
| ACCGACGGTACCTTCAACCA+CGG | + | chr5.1:8199574-8199593 | None:intergenic | 55.0% | |
| GGCTATGGAATGTGGGTGTG+GGG | - | chr5.1:8199702-8199721 | MS.gene20284:CDS | 55.0% | |
| TTGTATGGGCTTGGGGGTGA+AGG | - | chr5.1:8199628-8199647 | MS.gene20284:CDS | 55.0% | |
| !! | GTTGAAGGTACCGTCGGTTC+CGG | - | chr5.1:8199576-8199595 | MS.gene20284:CDS | 55.0% |
| CCTTCAACCACGGCAAAGCC+CGG | + | chr5.1:8199564-8199583 | None:intergenic | 60.0% | |
| GGAATGTGGGTGTGGGGTTG+TGG | - | chr5.1:8199708-8199727 | MS.gene20284:CDS | 60.0% | |
| GTGTGGGGTTGTGGCTACTG+AGG | - | chr5.1:8199717-8199736 | MS.gene20284:CDS | 60.0% | |
| TGGGGGTGAAGGCCCAAAGA+AGG | - | chr5.1:8199639-8199658 | MS.gene20284:CDS | 60.0% | |
| ! | TTTTGGACCGGGCTTTGCCG+TGG | - | chr5.1:8199554-8199573 | MS.gene20284:CDS | 60.0% |
| !! | GCCGTGGTTGAAGGTACCGT+CGG | - | chr5.1:8199570-8199589 | MS.gene20284:CDS | 60.0% |
| CCGGGCTTTGCCGTGGTTGA+AGG | - | chr5.1:8199561-8199580 | MS.gene20284:CDS | 65.0% | |
| GCGCGTCGCGTGTCAAGCGC+GGG | - | chr5.1:8199512-8199531 | MS.gene20284:CDS | 75.0% | |
| GGCGCGTCGCGTGTCAAGCG+CGG | - | chr5.1:8199511-8199530 | MS.gene20284:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 8199052 | 8199912 | 8199052 | ID=MS.gene20284 |
| chr5.1 | mRNA | 8199052 | 8199912 | 8199052 | ID=MS.gene20284.t1;Parent=MS.gene20284 |
| chr5.1 | exon | 8199052 | 8199912 | 8199052 | ID=MS.gene20284.t1.exon1;Parent=MS.gene20284.t1 |
| chr5.1 | CDS | 8199052 | 8199912 | 8199052 | ID=cds.MS.gene20284.t1;Parent=MS.gene20284.t1 |
| Gene Sequence |
| Protein sequence |
