Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20290.t1 | XP_003611597.2 | 97.6 | 368 | 9 | 0 | 3 | 370 | 8 | 375 | 4.80E-214 | 753.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20290.t1 | Q9FJX5 | 65.0 | 360 | 114 | 2 | 11 | 369 | 20 | 368 | 7.5e-139 | 495.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20290.t1 | G7K3T4 | 97.6 | 368 | 9 | 0 | 3 | 370 | 47 | 414 | 3.5e-214 | 753.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene20290.t1 | TR | TAZ |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20290.t1 | MTR_5g015680 | 97.554 | 368 | 9 | 0 | 3 | 370 | 47 | 414 | 0.0 | 754 |
| MS.gene20290.t1 | MTR_5g015680 | 97.554 | 368 | 9 | 0 | 3 | 370 | 8 | 375 | 0.0 | 753 |
| MS.gene20290.t1 | MTR_5g015680 | 98.214 | 280 | 5 | 0 | 91 | 370 | 1 | 280 | 0.0 | 572 |
| MS.gene20290.t1 | MTR_4g104140 | 44.781 | 297 | 159 | 5 | 63 | 355 | 17 | 312 | 7.33e-83 | 256 |
| MS.gene20290.t1 | MTR_4g104140 | 46.218 | 238 | 123 | 5 | 121 | 355 | 7 | 242 | 5.64e-67 | 213 |
| MS.gene20290.t1 | MTR_3g075270 | 36.923 | 260 | 163 | 1 | 103 | 362 | 7 | 265 | 4.08e-64 | 207 |
| MS.gene20290.t1 | MTR_4g005050 | 34.426 | 122 | 66 | 4 | 243 | 364 | 1598 | 1705 | 4.73e-15 | 77.4 |
| MS.gene20290.t1 | MTR_3g088660 | 29.412 | 153 | 101 | 3 | 76 | 226 | 97 | 244 | 7.21e-13 | 68.2 |
| MS.gene20290.t1 | MTR_5g085310 | 38.356 | 73 | 44 | 1 | 273 | 345 | 953 | 1024 | 1.70e-12 | 69.3 |
| MS.gene20290.t1 | MTR_3g107960 | 39.506 | 81 | 47 | 2 | 274 | 353 | 1119 | 1198 | 5.76e-12 | 67.8 |
| MS.gene20290.t1 | MTR_6g017010 | 38.889 | 72 | 43 | 1 | 274 | 345 | 685 | 755 | 9.01e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20290.t1 | AT5G67480 | 65.000 | 360 | 114 | 2 | 11 | 369 | 20 | 368 | 9.31e-178 | 498 |
| MS.gene20290.t1 | AT5G67480 | 65.000 | 360 | 114 | 2 | 11 | 369 | 20 | 368 | 9.31e-178 | 498 |
| MS.gene20290.t1 | AT5G67480 | 65.000 | 360 | 114 | 2 | 11 | 369 | 31 | 379 | 1.52e-177 | 498 |
| MS.gene20290.t1 | AT4G37610 | 60.976 | 328 | 126 | 2 | 41 | 367 | 34 | 360 | 8.44e-150 | 427 |
| MS.gene20290.t1 | AT1G05690 | 49.861 | 361 | 167 | 4 | 4 | 360 | 1 | 351 | 1.56e-110 | 327 |
| MS.gene20290.t1 | AT3G48360 | 43.789 | 322 | 163 | 8 | 56 | 361 | 28 | 347 | 2.20e-79 | 248 |
| MS.gene20290.t1 | AT5G63160 | 43.770 | 313 | 163 | 7 | 61 | 361 | 24 | 335 | 8.65e-76 | 239 |
| MS.gene20290.t1 | AT3G48360 | 45.862 | 290 | 142 | 6 | 56 | 331 | 28 | 316 | 1.55e-73 | 232 |
| MS.gene20290.t1 | AT5G63160 | 46.099 | 282 | 140 | 6 | 61 | 331 | 24 | 304 | 2.64e-71 | 225 |
| MS.gene20290.t1 | AT5G63160 | 45.020 | 251 | 127 | 7 | 120 | 361 | 2 | 250 | 8.38e-60 | 194 |
| MS.gene20290.t1 | AT3G48360 | 44.033 | 243 | 122 | 7 | 131 | 361 | 1 | 241 | 1.30e-58 | 191 |
| MS.gene20290.t1 | AT1G79000 | 29.577 | 142 | 82 | 4 | 223 | 364 | 1546 | 1669 | 6.41e-15 | 77.0 |
| MS.gene20290.t1 | AT1G79000 | 29.577 | 142 | 82 | 4 | 223 | 364 | 1570 | 1693 | 6.45e-15 | 77.0 |
| MS.gene20290.t1 | AT1G79000 | 29.577 | 142 | 82 | 4 | 223 | 364 | 1570 | 1693 | 6.48e-15 | 77.0 |
| MS.gene20290.t1 | AT1G16710 | 28.873 | 142 | 83 | 4 | 223 | 364 | 1550 | 1673 | 9.78e-13 | 70.5 |
| MS.gene20290.t1 | AT1G16710 | 28.873 | 142 | 83 | 4 | 223 | 364 | 1553 | 1676 | 9.96e-13 | 70.5 |
| MS.gene20290.t1 | AT1G16710 | 28.873 | 142 | 83 | 4 | 223 | 364 | 1553 | 1676 | 9.96e-13 | 70.5 |
| MS.gene20290.t1 | AT1G16710 | 28.873 | 142 | 83 | 4 | 223 | 364 | 1553 | 1676 | 9.96e-13 | 70.5 |
| MS.gene20290.t1 | AT1G16710 | 28.873 | 142 | 83 | 4 | 223 | 364 | 1553 | 1676 | 9.96e-13 | 70.5 |
| MS.gene20290.t1 | AT1G16710 | 28.873 | 142 | 83 | 4 | 223 | 364 | 1514 | 1637 | 1.03e-12 | 70.1 |
| MS.gene20290.t1 | AT1G16710 | 28.873 | 142 | 83 | 4 | 223 | 364 | 1514 | 1637 | 1.03e-12 | 70.1 |
| MS.gene20290.t1 | AT1G16710 | 28.873 | 142 | 83 | 4 | 223 | 364 | 1514 | 1637 | 1.03e-12 | 70.1 |
| MS.gene20290.t1 | AT1G16710 | 28.873 | 142 | 83 | 4 | 223 | 364 | 1579 | 1702 | 1.07e-12 | 70.1 |
| MS.gene20290.t1 | AT3G12980 | 36.471 | 85 | 50 | 2 | 276 | 360 | 1581 | 1661 | 4.79e-11 | 65.1 |
| MS.gene20290.t1 | AT3G12980 | 36.471 | 85 | 50 | 2 | 276 | 360 | 1500 | 1580 | 4.80e-11 | 65.1 |
Find 74 sgRNAs with CRISPR-Local
Find 131 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGAAATTAGATGGACAATTT+TGG | 0.186306 | 5.1:+8104392 | MS.gene20290:CDS |
| GGCGATCGATCTCAATCTTT+GGG | 0.258443 | 5.1:+8103022 | MS.gene20290:CDS |
| TGGCGATCGATCTCAATCTT+TGG | 0.276993 | 5.1:+8103021 | MS.gene20290:CDS |
| TTCGATATTTGTATTCTTCC+TGG | 0.281886 | 5.1:+8103073 | MS.gene20290:CDS |
| ATCTTGAAAACAAGAGGAAT+TGG | 0.329795 | 5.1:+8104423 | MS.gene20290:CDS |
| AAGCAATTCAAGCCCTTTGC+AGG | 0.347578 | 5.1:-8104112 | None:intergenic |
| TTGGGATTGCACCATGCTTT+CGG | 0.361459 | 5.1:+8104442 | MS.gene20290:CDS |
| AAAGAACTTCAAAACTGTTT+CGG | 0.374386 | 5.1:+8103733 | MS.gene20290:CDS |
| AGTTCTAGAAAAGGAAATTC+TGG | 0.390373 | 5.1:+8103793 | MS.gene20290:CDS |
| CGCATACTCGCAAGGATAAC+CGG | 0.402463 | 5.1:-8102410 | None:intergenic |
| GCAAGAAAGACGAAATTAGA+TGG | 0.406485 | 5.1:+8104382 | MS.gene20290:CDS |
| AAAGGAACTCTACAGAAATC+TGG | 0.408140 | 5.1:-8104237 | None:intergenic |
| ATGTGAACAGAAGCTAGAAT+TGG | 0.410891 | 5.1:+8103616 | MS.gene20290:CDS |
| AGAGATGGTTGTCGAACTAT+TGG | 0.415706 | 5.1:+8104042 | MS.gene20290:CDS |
| GGTTGCAAGTTGAGAGTCCC+TGG | 0.418562 | 5.1:+8104150 | MS.gene20290:CDS |
| CTAGTTCACATTTGTAGAGA+TGG | 0.440223 | 5.1:+8104027 | MS.gene20290:CDS |
| CGAGGCGAAGGAGGTGGTAT+CGG | 0.446905 | 5.1:-8102376 | None:intergenic |
| TCTGTAGAGTTCCTTTGTGC+AGG | 0.450851 | 5.1:+8104244 | MS.gene20290:CDS |
| TCTTGAAAACAAGAGGAATT+GGG | 0.451569 | 5.1:+8104424 | MS.gene20290:CDS |
| TTCAGCATGCCTCTCAATAC+AGG | 0.459183 | 5.1:-8102976 | None:intergenic |
| TGAGATCGATCGCCACCGAT+TGG | 0.468351 | 5.1:-8103013 | None:intergenic |
| GGAATTTGTCCTACATTTGT+TGG | 0.476702 | 5.1:+8103553 | MS.gene20290:CDS |
| GAGTCACCCAGTTCTAGAAA+AGG | 0.485308 | 5.1:+8103784 | MS.gene20290:CDS |
| GTTTGCATTAATACTGATAA+CGG | 0.495992 | 5.1:+8102532 | MS.gene20290:CDS |
| TGTGAACAGAAGCTAGAATT+GGG | 0.501782 | 5.1:+8103617 | MS.gene20290:CDS |
| ACACAGCTGCTTCGCCCTCT+CGG | 0.509722 | 5.1:-8102451 | None:intergenic |
| TTACGAGAAAGAAGAAATGA+AGG | 0.513436 | 5.1:+8103532 | MS.gene20290:CDS |
| TTCTGCAACAAGAGATCTGT+GGG | 0.515476 | 5.1:+8102477 | MS.gene20290:CDS |
| TCGCCTCGATCAGCAGCAAC+CGG | 0.515743 | 5.1:+8102391 | MS.gene20290:CDS |
| GTTGCAAGTTGAGAGTCCCT+GGG | 0.520761 | 5.1:+8104151 | MS.gene20290:CDS |
| CACATTCACGCTTCAAGTGA+GGG | 0.529306 | 5.1:-8103598 | None:intergenic |
| GTGCTCATTGCAAGAGGATG+TGG | 0.529329 | 5.1:+8104178 | MS.gene20290:CDS |
| ATAAGCTGATGGCTAACATT+CGG | 0.529455 | 5.1:+8102335 | None:intergenic |
| CAAGAGGATGTGGCAACTGT+TGG | 0.537744 | 5.1:+8104188 | MS.gene20290:CDS |
| ATTGATTGATCAGAGTAAGA+AGG | 0.539090 | 5.1:+8103942 | MS.gene20290:intron |
| CTTTGAAGTCTTTATCATGC+GGG | 0.542449 | 5.1:-8104065 | None:intergenic |
| AAAACTGTTTCGGAGTCAGA+AGG | 0.543714 | 5.1:+8103743 | MS.gene20290:CDS |
| GAGAAAGCACCAACAAATGT+AGG | 0.546221 | 5.1:-8103562 | None:intergenic |
| AGCAAGCAAATCGTTCCAAT+CGG | 0.549306 | 5.1:+8102998 | MS.gene20290:CDS |
| GTTGCTGCTGATCGAGGCGA+AGG | 0.550246 | 5.1:-8102388 | None:intergenic |
| TTTGCAATTATACGATGCAA+TGG | 0.552736 | 5.1:+8103999 | MS.gene20290:CDS |
| GTAGGTATACTTCCTGCAAA+GGG | 0.554458 | 5.1:+8104100 | MS.gene20290:CDS |
| GCTGATCGAGGCGAAGGAGG+TGG | 0.554736 | 5.1:-8102382 | None:intergenic |
| ATCAGTATTAATGCAAACAT+CGG | 0.559796 | 5.1:-8102527 | None:intergenic |
| AGGAAGTATACCTACACGGC+TGG | 0.561333 | 5.1:-8104092 | None:intergenic |
| GAAAAGATCTTGAAAACAAG+AGG | 0.566400 | 5.1:+8104417 | MS.gene20290:CDS |
| GCTTTGAAGTCTTTATCATG+CGG | 0.567781 | 5.1:-8104066 | None:intergenic |
| TTCATCGCCGCATACTCGCA+AGG | 0.575928 | 5.1:-8102418 | None:intergenic |
| ATGAATAATTTATCACCGAG+AGG | 0.575964 | 5.1:+8102436 | MS.gene20290:CDS |
| GCTGCTGATCGAGGCGAAGG+AGG | 0.588376 | 5.1:-8102385 | None:intergenic |
| TGTAGGTATACTTCCTGCAA+AGG | 0.593266 | 5.1:+8104099 | MS.gene20290:CDS |
| TTGATCAGAGTAAGAAGGAG+AGG | 0.595421 | 5.1:+8103947 | MS.gene20290:intron |
| TCACATTCACGCTTCAAGTG+AGG | 0.596344 | 5.1:-8103599 | None:intergenic |
| CGGTTATCCTTGCGAGTATG+CGG | 0.602040 | 5.1:+8102411 | MS.gene20290:CDS |
| CTGTTTCGGAGTCAGAAGGA+TGG | 0.605228 | 5.1:+8103747 | MS.gene20290:CDS |
| AAGCAAATCGTTCCAATCGG+TGG | 0.607764 | 5.1:+8103001 | MS.gene20290:CDS |
| TCAAAGCAAACCAGCCGTGT+AGG | 0.611970 | 5.1:+8104082 | MS.gene20290:CDS |
| TGTCATTGTGGCCGAAAGCA+TGG | 0.612906 | 5.1:-8104453 | None:intergenic |
| TAACCGGTTGCTGCTGATCG+AGG | 0.614451 | 5.1:-8102394 | None:intergenic |
| GGGGTTGTGCTCATTGCAAG+AGG | 0.622565 | 5.1:+8104172 | MS.gene20290:CDS |
| AAAACTCGTACTGCATCATG+TGG | 0.623793 | 5.1:-8103048 | None:intergenic |
| GTGGCTTCTCCTGTATTGAG+AGG | 0.626268 | 5.1:+8102967 | MS.gene20290:CDS |
| TACATCAACTAGATTATCCA+CGG | 0.627170 | 5.1:-8103648 | None:intergenic |
| GCGATCGATCTCAATCTTTG+GGG | 0.627705 | 5.1:+8103023 | MS.gene20290:CDS |
| CTTCTGCAACAAGAGATCTG+TGG | 0.636785 | 5.1:+8102476 | MS.gene20290:CDS |
| TGAATAATTTATCACCGAGA+GGG | 0.647099 | 5.1:+8102437 | MS.gene20290:CDS |
| TGCATTAATACTGATAACGG+TGG | 0.661014 | 5.1:+8102535 | MS.gene20290:CDS |
| TTGCAAGTTGAGAGTCCCTG+GGG | 0.661286 | 5.1:+8104152 | MS.gene20290:CDS |
| TAATATTGTTACCTGCACAA+AGG | 0.667930 | 5.1:-8104255 | None:intergenic |
| AGAATTGGGTTTACTCACCG+TGG | 0.691467 | 5.1:+8103631 | MS.gene20290:CDS |
| TTGCAGGAAGTATACCTACA+CGG | 0.699708 | 5.1:-8104096 | None:intergenic |
| TGCAAGTTGAGAGTCCCTGG+GGG | 0.717689 | 5.1:+8104153 | MS.gene20290:CDS |
| CATTACTGTGTGATGCTCCG+CGG | 0.722450 | 5.1:+8103681 | MS.gene20290:CDS |
| TGACAAATGAGACTGAGCCG+CGG | 0.747022 | 5.1:-8103698 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTACACAATAATAGATAATT+AGG | + | chr5.1:8103894-8103913 | MS.gene20290:intron | 15.0% |
| !!! | AAAAAAAATTGAGTTTTGTT+TGG | + | chr5.1:8103357-8103376 | MS.gene20290:intron | 15.0% |
| !!! | AAAAAAATTGAGTTTTGTTT+GGG | + | chr5.1:8103358-8103377 | MS.gene20290:intron | 15.0% |
| !!! | TAACTTTAAGAAATTTCAAT+CGG | + | chr5.1:8103253-8103272 | MS.gene20290:intron | 15.0% |
| !!! | TATGCAATTAATCTATTTTA+AGG | + | chr5.1:8102748-8102767 | MS.gene20290:intron | 15.0% |
| !! | ATTTCTTAAAGTTATCCTAT+CGG | - | chr5.1:8103247-8103266 | None:intergenic | 20.0% |
| !!! | AAAAAATTGAGTTTTGTTTG+GGG | + | chr5.1:8103359-8103378 | MS.gene20290:intron | 20.0% |
| !!! | ATGATTTTGAGGTTTATAAA+GGG | - | chr5.1:8103109-8103128 | None:intergenic | 20.0% |
| !!! | TATGATTTTGAGGTTTATAA+AGG | - | chr5.1:8103110-8103129 | None:intergenic | 20.0% |
| !!! | TGAAGTTCTTTAGTATTTTA+CGG | - | chr5.1:8103724-8103743 | None:intergenic | 20.0% |
| ! | AAAGAACTTCAAAACTGTTT+CGG | + | chr5.1:8103733-8103752 | MS.gene20290:CDS | 25.0% |
| ! | AACTGTGAAATTGAAACAAA+TGG | + | chr5.1:8103329-8103348 | MS.gene20290:intron | 25.0% |
| ! | ATCAGTATTAATGCAAACAT+CGG | - | chr5.1:8102530-8102549 | None:intergenic | 25.0% |
| ! | ATTCAAAAGTAGTTAGACAA+TGG | - | chr5.1:8103920-8103939 | None:intergenic | 25.0% |
| ! | GTTTGCATTAATACTGATAA+CGG | + | chr5.1:8102532-8102551 | MS.gene20290:CDS | 25.0% |
| ! | TCACTTTATACTATATGATC+AGG | + | chr5.1:8102942-8102961 | MS.gene20290:intron | 25.0% |
| ! | TGATTGAAGAAGAAAATGTA+AGG | + | chr5.1:8103822-8103841 | MS.gene20290:intron | 25.0% |
| ! | TGATTGTATTTATTTCAGCT+CGG | + | chr5.1:8104293-8104312 | MS.gene20290:intron | 25.0% |
| !! | CAAACATTCTTATGATTTTG+AGG | - | chr5.1:8103120-8103139 | None:intergenic | 25.0% |
| !! | GTAACAAATCTTTTCATTTC+AGG | + | chr5.1:8104331-8104350 | MS.gene20290:intron | 25.0% |
| !!! | AAAAATTGAGTTTTGTTTGG+GGG | + | chr5.1:8103360-8103379 | MS.gene20290:intron | 25.0% |
| ATCTTGAAAACAAGAGGAAT+TGG | + | chr5.1:8104423-8104442 | MS.gene20290:CDS | 30.0% | |
| ATGAATAATTTATCACCGAG+AGG | + | chr5.1:8102436-8102455 | MS.gene20290:CDS | 30.0% | |
| ATTGATTGATCAGAGTAAGA+AGG | + | chr5.1:8103942-8103961 | MS.gene20290:intron | 30.0% | |
| CAGAAAAATGAATGAAAGAG+AGG | + | chr5.1:8103972-8103991 | MS.gene20290:CDS | 30.0% | |
| CTTTATACTATATGATCAGG+CGG | + | chr5.1:8102945-8102964 | MS.gene20290:intron | 30.0% | |
| GAAAAGATCTTGAAAACAAG+AGG | + | chr5.1:8104417-8104436 | MS.gene20290:CDS | 30.0% | |
| TAAGAAATTTCAATCGGTAG+TGG | + | chr5.1:8103259-8103278 | MS.gene20290:intron | 30.0% | |
| TAATATTGTTACCTGCACAA+AGG | - | chr5.1:8104258-8104277 | None:intergenic | 30.0% | |
| TACATCAACTAGATTATCCA+CGG | - | chr5.1:8103651-8103670 | None:intergenic | 30.0% | |
| TACTTCGAAATTGATCTACT+CGG | - | chr5.1:8103305-8103324 | None:intergenic | 30.0% | |
| TCTTGAAAACAAGAGGAATT+GGG | + | chr5.1:8104424-8104443 | MS.gene20290:CDS | 30.0% | |
| TCTTTGAACGAATTAGTAGT+AGG | + | chr5.1:8102693-8102712 | MS.gene20290:intron | 30.0% | |
| TGAATAATTTATCACCGAGA+GGG | + | chr5.1:8102437-8102456 | MS.gene20290:CDS | 30.0% | |
| TTACGAGAAAGAAGAAATGA+AGG | + | chr5.1:8103532-8103551 | MS.gene20290:CDS | 30.0% | |
| TTCGATATTTGTATTCTTCC+TGG | + | chr5.1:8103073-8103092 | MS.gene20290:CDS | 30.0% | |
| TTTGCAATTATACGATGCAA+TGG | + | chr5.1:8103999-8104018 | MS.gene20290:CDS | 30.0% | |
| ! | AGTAGGCTCAAAATTTTCAT+AGG | + | chr5.1:8102710-8102729 | MS.gene20290:intron | 30.0% |
| ! | CGAAATTAGATGGACAATTT+TGG | + | chr5.1:8104392-8104411 | MS.gene20290:CDS | 30.0% |
| !! | AGTTCTAGAAAAGGAAATTC+TGG | + | chr5.1:8103793-8103812 | MS.gene20290:CDS | 30.0% |
| !!! | AAAATTGAGTTTTGTTTGGG+GGG | + | chr5.1:8103361-8103380 | MS.gene20290:intron | 30.0% |
| !!! | AGAATTTCCTTTTCTAGAAC+TGG | - | chr5.1:8103794-8103813 | None:intergenic | 30.0% |
| !!! | GAATTTCCTTTTCTAGAACT+GGG | - | chr5.1:8103793-8103812 | None:intergenic | 30.0% |
| AAAGGAACTCTACAGAAATC+TGG | - | chr5.1:8104240-8104259 | None:intergenic | 35.0% | |
| ATAAAGGGAACAAACATACC+AGG | - | chr5.1:8103094-8103113 | None:intergenic | 35.0% | |
| ATGTGAACAGAAGCTAGAAT+TGG | + | chr5.1:8103616-8103635 | MS.gene20290:CDS | 35.0% | |
| CTAGTTCACATTTGTAGAGA+TGG | + | chr5.1:8104027-8104046 | MS.gene20290:CDS | 35.0% | |
| GCAAGAAAGACGAAATTAGA+TGG | + | chr5.1:8104382-8104401 | MS.gene20290:CDS | 35.0% | |
| GGAATTTGTCCTACATTTGT+TGG | + | chr5.1:8103553-8103572 | MS.gene20290:CDS | 35.0% | |
| GTGCCTATTCAAAATCAAGT+GGG | - | chr5.1:8102603-8102622 | None:intergenic | 35.0% | |
| GTTTGTCTCCTTGTACTATA+GGG | + | chr5.1:8103135-8103154 | MS.gene20290:intron | 35.0% | |
| TGTGAACAGAAGCTAGAATT+GGG | + | chr5.1:8103617-8103636 | MS.gene20290:CDS | 35.0% | |
| TGTTTGTCTCCTTGTACTAT+AGG | + | chr5.1:8103134-8103153 | MS.gene20290:intron | 35.0% | |
| TTTGTCTCCTTGTACTATAG+GGG | + | chr5.1:8103136-8103155 | MS.gene20290:intron | 35.0% | |
| ! | CACTTGATTTTGAATAGGCA+CGG | + | chr5.1:8102602-8102621 | MS.gene20290:intron | 35.0% |
| ! | CATCCCACTTGATTTTGAAT+AGG | + | chr5.1:8102597-8102616 | MS.gene20290:intron | 35.0% |
| ! | GTAGGCTTGATAATATTCTC+TGG | + | chr5.1:8103158-8103177 | MS.gene20290:intron | 35.0% |
| !! | CTTTGAAGTCTTTATCATGC+GGG | - | chr5.1:8104068-8104087 | None:intergenic | 35.0% |
| !! | GAAATTTTGATGTACCTAGC+CGG | - | chr5.1:8102634-8102653 | None:intergenic | 35.0% |
| !! | GCTTTGAAGTCTTTATCATG+CGG | - | chr5.1:8104069-8104088 | None:intergenic | 35.0% |
| !! | TGCATTAATACTGATAACGG+TGG | + | chr5.1:8102535-8102554 | MS.gene20290:CDS | 35.0% |
| AAAACTCGTACTGCATCATG+TGG | - | chr5.1:8103051-8103070 | None:intergenic | 40.0% | |
| AAAACTGTTTCGGAGTCAGA+AGG | + | chr5.1:8103743-8103762 | MS.gene20290:CDS | 40.0% | |
| AGAGATGGTTGTCGAACTAT+TGG | + | chr5.1:8104042-8104061 | MS.gene20290:CDS | 40.0% | |
| AGCAAGCAAATCGTTCCAAT+CGG | + | chr5.1:8102998-8103017 | MS.gene20290:CDS | 40.0% | |
| ATTGATCTACTCGGTTTAGC+TGG | - | chr5.1:8103296-8103315 | None:intergenic | 40.0% | |
| CGTGCCTATTCAAAATCAAG+TGG | - | chr5.1:8102604-8102623 | None:intergenic | 40.0% | |
| GAGATCAACATAGCTGATCA+AGG | + | chr5.1:8103392-8103411 | MS.gene20290:intron | 40.0% | |
| GTAGGTATACTTCCTGCAAA+GGG | + | chr5.1:8104100-8104119 | MS.gene20290:CDS | 40.0% | |
| GTTATCCTATCGGCAATGAA+TGG | - | chr5.1:8103237-8103256 | None:intergenic | 40.0% | |
| TACATCCATTCATTGCCGAT+AGG | + | chr5.1:8103229-8103248 | MS.gene20290:intron | 40.0% | |
| TATACTATATGATCAGGCGG+TGG | + | chr5.1:8102948-8102967 | MS.gene20290:intron | 40.0% | |
| TGTAGGTATACTTCCTGCAA+AGG | + | chr5.1:8104099-8104118 | MS.gene20290:CDS | 40.0% | |
| TTCTGCAACAAGAGATCTGT+GGG | + | chr5.1:8102477-8102496 | MS.gene20290:CDS | 40.0% | |
| TTGATCAGAGTAAGAAGGAG+AGG | + | chr5.1:8103947-8103966 | MS.gene20290:intron | 40.0% | |
| ! | TTGCAGGAAGTATACCTACA+CGG | - | chr5.1:8104099-8104118 | None:intergenic | 40.0% |
| !! | GAGAAAGCACCAACAAATGT+AGG | - | chr5.1:8103565-8103584 | None:intergenic | 40.0% |
| !! | TTGCTTGTTCGTCATTTTGC+TGG | + | chr5.1:8104129-8104148 | MS.gene20290:CDS | 40.0% |
| AAGCAAATCGTTCCAATCGG+TGG | + | chr5.1:8103001-8103020 | MS.gene20290:CDS | 45.0% | |
| AAGCAATTCAAGCCCTTTGC+AGG | - | chr5.1:8104115-8104134 | None:intergenic | 45.0% | |
| AAGCCTACCCCTATAGTACA+AGG | - | chr5.1:8103146-8103165 | None:intergenic | 45.0% | |
| AGAATTGGGTTTACTCACCG+TGG | + | chr5.1:8103631-8103650 | MS.gene20290:CDS | 45.0% | |
| CACATTCACGCTTCAAGTGA+GGG | - | chr5.1:8103601-8103620 | None:intergenic | 45.0% | |
| CTCTTAAGCAGTGACATCTG+TGG | - | chr5.1:8102774-8102793 | None:intergenic | 45.0% | |
| CTTCTGCAACAAGAGATCTG+TGG | + | chr5.1:8102476-8102495 | MS.gene20290:CDS | 45.0% | |
| GCGATCGATCTCAATCTTTG+GGG | + | chr5.1:8103023-8103042 | MS.gene20290:CDS | 45.0% | |
| GGCGATCGATCTCAATCTTT+GGG | + | chr5.1:8103022-8103041 | MS.gene20290:CDS | 45.0% | |
| TCACATTCACGCTTCAAGTG+AGG | - | chr5.1:8103602-8103621 | None:intergenic | 45.0% | |
| TCTCCTTGTACTATAGGGGT+AGG | + | chr5.1:8103140-8103159 | MS.gene20290:intron | 45.0% | |
| TCTGTAGAGTTCCTTTGTGC+AGG | + | chr5.1:8104244-8104263 | MS.gene20290:CDS | 45.0% | |
| TGGCGATCGATCTCAATCTT+TGG | + | chr5.1:8103021-8103040 | MS.gene20290:CDS | 45.0% | |
| TTCAGCATGCCTCTCAATAC+AGG | - | chr5.1:8102979-8102998 | None:intergenic | 45.0% | |
| TTGGGATTGCACCATGCTTT+CGG | + | chr5.1:8104442-8104461 | MS.gene20290:CDS | 45.0% | |
| !! | GAGTCACCCAGTTCTAGAAA+AGG | + | chr5.1:8103784-8103803 | MS.gene20290:CDS | 45.0% |
| !!! | ATTGAGTTTTGTTTGGGGGG+TGG | + | chr5.1:8103364-8103383 | MS.gene20290:intron | 45.0% |
| !!! | GGGAGCGTCTTTTCAATGAA+GGG | + | chr5.1:8102497-8102516 | MS.gene20290:CDS | 45.0% |
| !!! | TGGGAGCGTCTTTTCAATGA+AGG | + | chr5.1:8102496-8102515 | MS.gene20290:CDS | 45.0% |
| !!! | TTGAGTTTTGTTTGGGGGGT+GGG | + | chr5.1:8103365-8103384 | MS.gene20290:intron | 45.0% |
| !! | AACAAAAAAATTAATAATTA+AGG | - | chr5.1:8103861-8103880 | None:intergenic | 5.0% |
| CAAGAGGATGTGGCAACTGT+TGG | + | chr5.1:8104188-8104207 | MS.gene20290:CDS | 50.0% | |
| CATTACTGTGTGATGCTCCG+CGG | + | chr5.1:8103681-8103700 | MS.gene20290:CDS | 50.0% | |
| CGCATACTCGCAAGGATAAC+CGG | - | chr5.1:8102413-8102432 | None:intergenic | 50.0% | |
| CGGTTATCCTTGCGAGTATG+CGG | + | chr5.1:8102411-8102430 | MS.gene20290:CDS | 50.0% | |
| CTGTTTCGGAGTCAGAAGGA+TGG | + | chr5.1:8103747-8103766 | MS.gene20290:CDS | 50.0% | |
| GTGCTCATTGCAAGAGGATG+TGG | + | chr5.1:8104178-8104197 | MS.gene20290:CDS | 50.0% | |
| GTGGCTTCTCCTGTATTGAG+AGG | + | chr5.1:8102967-8102986 | MS.gene20290:CDS | 50.0% | |
| TCAAAGCAAACCAGCCGTGT+AGG | + | chr5.1:8104082-8104101 | MS.gene20290:CDS | 50.0% | |
| TCTACTCGGTTTAGCTGGTG+AGG | - | chr5.1:8103291-8103310 | None:intergenic | 50.0% | |
| TGACAAATGAGACTGAGCCG+CGG | - | chr5.1:8103701-8103720 | None:intergenic | 50.0% | |
| ! | AGGAAGTATACCTACACGGC+TGG | - | chr5.1:8104095-8104114 | None:intergenic | 50.0% |
| ! | GTTGCAAGTTGAGAGTCCCT+GGG | + | chr5.1:8104151-8104170 | MS.gene20290:CDS | 50.0% |
| ! | TTGCAAGTTGAGAGTCCCTG+GGG | + | chr5.1:8104152-8104171 | MS.gene20290:CDS | 50.0% |
| !!! | TGAGTTTTGTTTGGGGGGTG+GGG | + | chr5.1:8103366-8103385 | MS.gene20290:intron | 50.0% |
| GGGGTTGTGCTCATTGCAAG+AGG | + | chr5.1:8104172-8104191 | MS.gene20290:CDS | 55.0% | |
| TAACCGGTTGCTGCTGATCG+AGG | - | chr5.1:8102397-8102416 | None:intergenic | 55.0% | |
| TGAATAGGCACGGATGCTGC+CGG | + | chr5.1:8102612-8102631 | MS.gene20290:intron | 55.0% | |
| TGAGATCGATCGCCACCGAT+TGG | - | chr5.1:8103016-8103035 | None:intergenic | 55.0% | |
| TGCAATGAGCACAACCCCCA+GGG | - | chr5.1:8104170-8104189 | None:intergenic | 55.0% | |
| TTCATCGCCGCATACTCGCA+AGG | - | chr5.1:8102421-8102440 | None:intergenic | 55.0% | |
| TTGCAATGAGCACAACCCCC+AGG | - | chr5.1:8104171-8104190 | None:intergenic | 55.0% | |
| ! | GGTTGCAAGTTGAGAGTCCC+TGG | + | chr5.1:8104150-8104169 | MS.gene20290:CDS | 55.0% |
| ! | TGCAAGTTGAGAGTCCCTGG+GGG | + | chr5.1:8104153-8104172 | MS.gene20290:CDS | 55.0% |
| !!! | GAGTTTTGTTTGGGGGGTGG+GGG | + | chr5.1:8103367-8103386 | MS.gene20290:intron | 55.0% |
| ACACAGCTGCTTCGCCCTCT+CGG | - | chr5.1:8102454-8102473 | None:intergenic | 60.0% | |
| CGAGGCGAAGGAGGTGGTAT+CGG | - | chr5.1:8102379-8102398 | None:intergenic | 60.0% | |
| GTTGCTGCTGATCGAGGCGA+AGG | - | chr5.1:8102391-8102410 | None:intergenic | 60.0% | |
| TCGCCTCGATCAGCAGCAAC+CGG | + | chr5.1:8102391-8102410 | MS.gene20290:CDS | 60.0% | |
| !! | TTTTGTTTGGGGGGTGGGGG+AGG | + | chr5.1:8103370-8103389 | MS.gene20290:intron | 60.0% |
| GCTGATCGAGGCGAAGGAGG+TGG | - | chr5.1:8102385-8102404 | None:intergenic | 65.0% | |
| GCTGCTGATCGAGGCGAAGG+AGG | - | chr5.1:8102388-8102407 | None:intergenic | 65.0% | |
| ! | AGGCACGGATGCTGCCGGCT+AGG | + | chr5.1:8102617-8102636 | MS.gene20290:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 8102343 | 8104473 | 8102343 | ID=MS.gene20290 |
| chr5.1 | mRNA | 8102343 | 8104473 | 8102343 | ID=MS.gene20290.t1;Parent=MS.gene20290 |
| chr5.1 | exon | 8102343 | 8102585 | 8102343 | ID=MS.gene20290.t1.exon1;Parent=MS.gene20290.t1 |
| chr5.1 | CDS | 8102343 | 8102585 | 8102343 | ID=cds.MS.gene20290.t1;Parent=MS.gene20290.t1 |
| chr5.1 | exon | 8102964 | 8103094 | 8102964 | ID=MS.gene20290.t1.exon2;Parent=MS.gene20290.t1 |
| chr5.1 | CDS | 8102964 | 8103094 | 8102964 | ID=cds.MS.gene20290.t1;Parent=MS.gene20290.t1 |
| chr5.1 | exon | 8103532 | 8103838 | 8103532 | ID=MS.gene20290.t1.exon3;Parent=MS.gene20290.t1 |
| chr5.1 | CDS | 8103532 | 8103838 | 8103532 | ID=cds.MS.gene20290.t1;Parent=MS.gene20290.t1 |
| chr5.1 | exon | 8103955 | 8104265 | 8103955 | ID=MS.gene20290.t1.exon4;Parent=MS.gene20290.t1 |
| chr5.1 | CDS | 8103955 | 8104265 | 8103955 | ID=cds.MS.gene20290.t1;Parent=MS.gene20290.t1 |
| chr5.1 | exon | 8104353 | 8104473 | 8104353 | ID=MS.gene20290.t1.exon5;Parent=MS.gene20290.t1 |
| chr5.1 | CDS | 8104353 | 8104473 | 8104353 | ID=cds.MS.gene20290.t1;Parent=MS.gene20290.t1 |
| Gene Sequence |
| Protein sequence |
