Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene20304.t1 | RHN53917.1 | 96.2 | 293 | 11 | 0 | 1 | 293 | 1 | 293 | 7.70E-122 | 446.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene20304.t1 | Q8VWK4 | 49.4 | 247 | 117 | 5 | 1 | 242 | 1 | 244 | 1.2e-54 | 214.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene20304.t1 | G7K2G9 | 96.2 | 293 | 11 | 0 | 1 | 293 | 1 | 293 | 5.6e-122 | 446.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene20304.t1 | TF | MYB-related |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene20304.t1 | MTR_5g015340 | 98.976 | 293 | 3 | 0 | 1 | 293 | 1 | 293 | 0.0 | 586 |
MS.gene20304.t1 | MTR_5g015340 | 98.976 | 293 | 3 | 0 | 1 | 293 | 1 | 293 | 0.0 | 586 |
MS.gene20304.t1 | MTR_5g015340 | 98.976 | 293 | 3 | 0 | 1 | 293 | 1 | 293 | 0.0 | 582 |
MS.gene20304.t1 | MTR_4g097130 | 65.372 | 309 | 90 | 6 | 1 | 293 | 1 | 308 | 6.48e-103 | 303 |
MS.gene20304.t1 | MTR_4g097130 | 65.372 | 309 | 90 | 6 | 1 | 293 | 1 | 308 | 7.88e-103 | 303 |
MS.gene20304.t1 | MTR_4g097130 | 64.013 | 314 | 91 | 6 | 1 | 293 | 1 | 313 | 1.24e-101 | 300 |
MS.gene20304.t1 | MTR_2g031870 | 48.548 | 241 | 117 | 5 | 1 | 236 | 1 | 239 | 3.92e-66 | 209 |
MS.gene20304.t1 | MTR_8g494240 | 48.117 | 239 | 119 | 5 | 1 | 236 | 1 | 237 | 1.38e-63 | 202 |
MS.gene20304.t1 | MTR_8g494240 | 48.117 | 239 | 119 | 5 | 1 | 236 | 1 | 237 | 1.72e-63 | 202 |
MS.gene20304.t1 | MTR_8g494240 | 48.117 | 239 | 119 | 5 | 1 | 236 | 1 | 237 | 2.57e-62 | 202 |
MS.gene20304.t1 | MTR_8g092810 | 40.316 | 253 | 137 | 4 | 1 | 240 | 1 | 252 | 3.45e-50 | 172 |
MS.gene20304.t1 | MTR_2g031870 | 45.205 | 292 | 127 | 6 | 1 | 287 | 1 | 264 | 4.27e-44 | 151 |
MS.gene20304.t1 | MTR_0095s0040 | 49.686 | 159 | 66 | 5 | 1 | 149 | 1 | 155 | 3.68e-38 | 135 |
MS.gene20304.t1 | MTR_1g041765 | 66.292 | 89 | 28 | 1 | 1 | 89 | 1 | 87 | 6.89e-33 | 120 |
MS.gene20304.t1 | MTR_8g018410 | 32.862 | 283 | 159 | 6 | 1 | 270 | 1 | 265 | 9.00e-32 | 119 |
MS.gene20304.t1 | MTR_2g099610 | 39.048 | 210 | 105 | 3 | 1 | 187 | 1 | 210 | 1.34e-31 | 119 |
MS.gene20304.t1 | MTR_1g088180 | 38.017 | 121 | 71 | 2 | 121 | 241 | 295 | 411 | 6.19e-14 | 72.0 |
MS.gene20304.t1 | MTR_3g467090 | 60.377 | 53 | 17 | 2 | 5 | 56 | 569 | 618 | 7.10e-12 | 66.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene20304.t1 | AT5G67580 | 53.925 | 293 | 131 | 1 | 1 | 289 | 1 | 293 | 1.36e-75 | 233 |
MS.gene20304.t1 | AT5G67580 | 53.925 | 293 | 131 | 1 | 1 | 289 | 1 | 293 | 1.36e-75 | 233 |
MS.gene20304.t1 | AT1G49950 | 48.971 | 243 | 116 | 5 | 1 | 238 | 1 | 240 | 1.15e-70 | 221 |
MS.gene20304.t1 | AT1G49950 | 48.971 | 243 | 116 | 5 | 1 | 238 | 1 | 240 | 1.15e-70 | 221 |
MS.gene20304.t1 | AT1G49950 | 48.971 | 243 | 116 | 5 | 1 | 238 | 1 | 240 | 1.15e-70 | 221 |
MS.gene20304.t1 | AT3G49850 | 51.186 | 295 | 132 | 5 | 1 | 289 | 1 | 289 | 2.95e-66 | 209 |
MS.gene20304.t1 | AT3G49850 | 51.186 | 295 | 132 | 5 | 1 | 289 | 1 | 289 | 2.95e-66 | 209 |
MS.gene20304.t1 | AT1G72740 | 33.449 | 287 | 168 | 5 | 1 | 284 | 1 | 267 | 9.39e-32 | 119 |
MS.gene20304.t1 | AT1G72740 | 33.449 | 287 | 174 | 6 | 1 | 284 | 1 | 273 | 3.64e-30 | 115 |
MS.gene20304.t1 | AT1G17520 | 36.500 | 200 | 110 | 3 | 1 | 187 | 1 | 196 | 1.50e-29 | 114 |
MS.gene20304.t1 | AT1G17520 | 32.990 | 291 | 161 | 7 | 1 | 275 | 1 | 273 | 3.87e-29 | 113 |
MS.gene20304.t1 | AT1G17520 | 36.816 | 201 | 109 | 4 | 1 | 187 | 1 | 197 | 7.24e-29 | 112 |
MS.gene20304.t1 | AT1G17520 | 33.219 | 292 | 160 | 8 | 1 | 275 | 1 | 274 | 1.55e-28 | 111 |
Find 72 sgRNAs with CRISPR-Local
Find 216 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCTAAGCCTCTTTCAGTTTC+TGG | 0.037607 | 5.1:+7897810 | MS.gene20304:CDS |
GGCTTAGGAGCTGCAACTTC+TGG | 0.214227 | 5.1:-7897795 | None:intergenic |
AATGCAGAAGACTTAATATT+TGG | 0.225595 | 5.1:+7900309 | MS.gene20304:CDS |
CGCAAAATGGTGCTGAAATC+TGG | 0.244024 | 5.1:-7897375 | None:intergenic |
TAACCTTGATATTTGTTCTT+TGG | 0.249384 | 5.1:-7897847 | None:intergenic |
ACATAAATGTGACTGCAATA+TGG | 0.284211 | 5.1:+7897670 | MS.gene20304:CDS |
TTCTGGATTATATTGAACTA+TGG | 0.296937 | 5.1:-7897778 | None:intergenic |
CTAGGAGAAAGCATTCAAAA+TGG | 0.335895 | 5.1:-7900402 | None:intergenic |
ATTTGAACGCATGCGCAAAA+TGG | 0.355071 | 5.1:-7897388 | None:intergenic |
CATAAATGTGACTGCAATAT+GGG | 0.356271 | 5.1:+7897671 | MS.gene20304:CDS |
TGACAATCGAGTCGAATATA+AGG | 0.364822 | 5.1:-7898389 | None:intergenic |
TCAAATACGGGGCTGGAAAA+TGG | 0.375403 | 5.1:+7897334 | MS.gene20304:CDS |
TCTGCAGTCCATTTCTGCTT+AGG | 0.379164 | 5.1:-7897282 | None:intergenic |
GAACTATGGCGGTCGAGGTT+GGG | 0.406154 | 5.1:-7897764 | None:intergenic |
AGCAGCTGCAAAAGCAGTTG+CGG | 0.409911 | 5.1:+7900175 | MS.gene20304:CDS |
GACAGTAACTTTATGAGGTT+TGG | 0.411444 | 5.1:-7899516 | None:intergenic |
CGCCATTGCTGCTTATATAG+AGG | 0.411827 | 5.1:+7898443 | MS.gene20304:CDS |
ATGCTCTTCCTTGTTACTCC+TGG | 0.423977 | 5.1:+7900034 | MS.gene20304:CDS |
TGGGTGCTCCTAAGCAGAAA+TGG | 0.425779 | 5.1:+7897274 | MS.gene20304:CDS |
GAAGAGGCAGCTCTGAAAGC+TGG | 0.428221 | 5.1:+7897306 | MS.gene20304:CDS |
AGCTGCAAAAGCAGTTGCGG+AGG | 0.430575 | 5.1:+7900178 | MS.gene20304:CDS |
TTGTTGACAGTAACTTTATG+AGG | 0.436494 | 5.1:-7899521 | None:intergenic |
CCAGAAACTGAAAGAGGCTT+AGG | 0.456807 | 5.1:-7897810 | None:intergenic |
CGACTCGATTGTCAAGTTGA+AGG | 0.467379 | 5.1:+7898398 | MS.gene20304:CDS |
TGAACTATGGCGGTCGAGGT+TGG | 0.475508 | 5.1:-7897765 | None:intergenic |
AAAGCTGGAGTAGTCAAATA+CGG | 0.485337 | 5.1:+7897321 | MS.gene20304:CDS |
GTCAACAAAACTGAAGCATA+TGG | 0.488294 | 5.1:+7899536 | MS.gene20304:CDS |
TAAGCTATGAACAGGACAAA+TGG | 0.495183 | 5.1:+7897643 | MS.gene20304:intron |
TGACTGCAATATGGGGATCC+AGG | 0.496295 | 5.1:+7897679 | MS.gene20304:CDS |
AAGCCTCTTTCAGTTTCTGG+TGG | 0.504900 | 5.1:+7897813 | MS.gene20304:CDS |
CTTCCTTGTTACTCCTGGAA+GGG | 0.505904 | 5.1:+7900039 | MS.gene20304:CDS |
GAAATCTGGGTCTGTAAGAA+TGG | 0.507475 | 5.1:-7897361 | None:intergenic |
GCGGCAATGTCAGAACCCTT+TGG | 0.508392 | 5.1:-7898423 | None:intergenic |
TCTTCCTTGTTACTCCTGGA+AGG | 0.509910 | 5.1:+7900038 | MS.gene20304:CDS |
TTATGAGGTTTGGTGGAGAC+CGG | 0.510215 | 5.1:-7899506 | None:intergenic |
GACAGGTAAATCATAAGTAC+AGG | 0.511866 | 5.1:+7899973 | MS.gene20304:intron |
AGTAACTTTATGAGGTTTGG+TGG | 0.512273 | 5.1:-7899513 | None:intergenic |
TAGGAGAAAGCATTCAAAAT+GGG | 0.512658 | 5.1:-7900401 | None:intergenic |
TGCTGTCTCAGCCTCAGCAA+TGG | 0.514472 | 5.1:-7900210 | None:intergenic |
GGCTGAGACAGCAGCAAGGG+AGG | 0.514772 | 5.1:+7900220 | MS.gene20304:CDS |
TGGCGGTCGAGGTTGGGTGG+TGG | 0.532625 | 5.1:-7897758 | None:intergenic |
GGAGTAGTCAAATACGGGGC+TGG | 0.532847 | 5.1:+7897327 | MS.gene20304:CDS |
CTTCCAAAGAACAAATATCA+AGG | 0.532967 | 5.1:+7897844 | MS.gene20304:CDS |
AAGCTGGAGTAGTCAAATAC+GGG | 0.536563 | 5.1:+7897322 | MS.gene20304:CDS |
GCAAAATGGTGCTGAAATCT+GGG | 0.539501 | 5.1:-7897374 | None:intergenic |
ATATTGAACTATGGCGGTCG+AGG | 0.543535 | 5.1:-7897769 | None:intergenic |
CCTTGTTACTCCTGGAAGGG+AGG | 0.547136 | 5.1:+7900042 | MS.gene20304:CDS |
GGCAGAAGCTGCCATTGCTG+AGG | 0.547830 | 5.1:+7900199 | MS.gene20304:CDS |
TACCTCTATATAAGCAGCAA+TGG | 0.560953 | 5.1:-7898445 | None:intergenic |
TGAGGCTGAGACAGCAGCAA+GGG | 0.562956 | 5.1:+7900217 | MS.gene20304:CDS |
CTATGGCGGTCGAGGTTGGG+TGG | 0.567809 | 5.1:-7897761 | None:intergenic |
TTCTGCTTAGGAGCACCCAT+TGG | 0.569658 | 5.1:-7897270 | None:intergenic |
TACCTCAATAGGATCAATAC+CGG | 0.570066 | 5.1:+7899487 | MS.gene20304:intron |
GAAATGGACTGCAGAAGAAG+AGG | 0.574527 | 5.1:+7897290 | MS.gene20304:CDS |
ATTCCACCAGAAACTGAAAG+AGG | 0.576366 | 5.1:-7897816 | None:intergenic |
TGTCAAGTTGAAGGAGCCAA+AGG | 0.577322 | 5.1:+7898407 | MS.gene20304:CDS |
GCGTTCAAATGTAGATCTCA+AGG | 0.582023 | 5.1:+7897401 | MS.gene20304:CDS |
CTCTATATAAGCAGCAATGG+CGG | 0.582614 | 5.1:-7898442 | None:intergenic |
GTCAAGTTGAAGGAGCCAAA+GGG | 0.586146 | 5.1:+7898408 | MS.gene20304:CDS |
GAGGGGTGTGACAGCTCAAG+AGG | 0.591616 | 5.1:+7900145 | MS.gene20304:CDS |
CCTCCCTTCCAGGAGTAACA+AGG | 0.596501 | 5.1:-7900042 | None:intergenic |
CTGAGGCTGAGACAGCAGCA+AGG | 0.616768 | 5.1:+7900216 | MS.gene20304:CDS |
AACAGCTGAAGCTGAAGCAG+AGG | 0.618779 | 5.1:+7900247 | MS.gene20304:CDS |
GTTTGCAAAAGCAGCAACGA+AGG | 0.621698 | 5.1:+7900280 | MS.gene20304:CDS |
CTGAAGCATATGGTGGCAAG+CGG | 0.627992 | 5.1:+7899546 | MS.gene20304:CDS |
AATATGGGGATCCAGGCAGA+AGG | 0.633799 | 5.1:+7897686 | MS.gene20304:CDS |
TGGATTATATTGAACTATGG+CGG | 0.635820 | 5.1:-7897775 | None:intergenic |
GGCAAGCGGCAAATTAGTGA+AGG | 0.638026 | 5.1:+7899560 | MS.gene20304:CDS |
GCTATGAACAGGACAAATGG+AGG | 0.639785 | 5.1:+7897646 | MS.gene20304:intron |
ATAAATGTGACTGCAATATG+GGG | 0.648699 | 5.1:+7897672 | MS.gene20304:CDS |
AACAAAACTGAAGCATATGG+TGG | 0.677408 | 5.1:+7899539 | MS.gene20304:CDS |
AGCTGGAGTAGTCAAATACG+GGG | 0.718064 | 5.1:+7897323 | MS.gene20304:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAGTAATTTAATATGATACT+TGG | + | chr5.1:7899920-7899939 | MS.gene20304:intron | 15.0% |
!! | AGTAAAATTATTGTTATGTT+AGG | + | chr5.1:7897470-7897489 | MS.gene20304:intron | 15.0% |
!! | AGTAATATAGGTTTATTAAA+AGG | - | chr5.1:7899882-7899901 | None:intergenic | 15.0% |
!! | ATAAACAACATATAAATCAA+TGG | - | chr5.1:7899169-7899188 | None:intergenic | 15.0% |
!! | TATTACTGTAAGATAAATAT+TGG | + | chr5.1:7899895-7899914 | MS.gene20304:intron | 15.0% |
!! | TATTTATCTTACAGTAATAT+AGG | - | chr5.1:7899894-7899913 | None:intergenic | 15.0% |
!!! | AAAAAAATGCTCTAATATTT+TGG | - | chr5.1:7899253-7899272 | None:intergenic | 15.0% |
!!! | CATTAAATCATTTAAAACTT+TGG | - | chr5.1:7898046-7898065 | None:intergenic | 15.0% |
!!! | TAAAAGTATTTTAAACTCTT+TGG | + | chr5.1:7898679-7898698 | MS.gene20304:intron | 15.0% |
!! | ATAGGTCAAATGAAAAATAT+CGG | + | chr5.1:7898626-7898645 | MS.gene20304:intron | 20.0% |
!! | ATATCCAATAAATTATTCAG+TGG | - | chr5.1:7899684-7899703 | None:intergenic | 20.0% |
!! | ATTGGTAAAGAGAAATTAAT+TGG | + | chr5.1:7899750-7899769 | MS.gene20304:intron | 20.0% |
!! | GAAAAACTTAGATATTAATG+AGG | + | chr5.1:7899031-7899050 | MS.gene20304:intron | 20.0% |
!! | GATTATATATACCATTAATG+AGG | - | chr5.1:7898486-7898505 | None:intergenic | 20.0% |
!! | TCATATTAAACTATATACCT+AGG | + | chr5.1:7897593-7897612 | MS.gene20304:intron | 20.0% |
!! | TGAATACAAAAAATCTGTTA+TGG | + | chr5.1:7899788-7899807 | MS.gene20304:intron | 20.0% |
!! | TTACACTTTATAGAACTAAA+TGG | + | chr5.1:7897894-7897913 | MS.gene20304:intron | 20.0% |
!! | TTATTGGATATTGAATGTTA+TGG | + | chr5.1:7899693-7899712 | MS.gene20304:intron | 20.0% |
!!! | AAACATTTTGTAGTTGTAAT+TGG | - | chr5.1:7898231-7898250 | None:intergenic | 20.0% |
!!! | TCTTTTTAATAATGACAGAT+TGG | + | chr5.1:7898362-7898381 | MS.gene20304:intron | 20.0% |
! | AATGCAGAAGACTTAATATT+TGG | + | chr5.1:7900309-7900328 | MS.gene20304:CDS | 25.0% |
! | AGTTATTAGCAGAAAATGAT+TGG | + | chr5.1:7899732-7899751 | MS.gene20304:intron | 25.0% |
! | ATGCATTAAGTAATGTTTCT+TGG | - | chr5.1:7900347-7900366 | None:intergenic | 25.0% |
! | ATTTATTCCAATTCCTTCAT+AGG | + | chr5.1:7898608-7898627 | MS.gene20304:intron | 25.0% |
! | GTTCTATCATAAACCTTATT+TGG | - | chr5.1:7899059-7899078 | None:intergenic | 25.0% |
! | TAACCTTGATATTTGTTCTT+TGG | - | chr5.1:7897850-7897869 | None:intergenic | 25.0% |
! | TAACTGTTTACTTTATCACA+AGG | + | chr5.1:7897529-7897548 | MS.gene20304:intron | 25.0% |
! | TATAATAGTTATCAGCTCTA+AGG | + | chr5.1:7897995-7898014 | MS.gene20304:intron | 25.0% |
! | TATGAAGGAATTGGAATAAA+TGG | - | chr5.1:7898609-7898628 | None:intergenic | 25.0% |
! | TATTAATGAGGATCCAAATA+AGG | + | chr5.1:7899043-7899062 | MS.gene20304:intron | 25.0% |
! | TTAAGTAATGTTTCTTGGTA+AGG | - | chr5.1:7900342-7900361 | None:intergenic | 25.0% |
! | TTCTGGATTATATTGAACTA+TGG | - | chr5.1:7897781-7897800 | None:intergenic | 25.0% |
!! | AAACAAGTTGCAAACAATTT+TGG | + | chr5.1:7898070-7898089 | MS.gene20304:intron | 25.0% |
!! | ATTTTTCATTTGACCTATGA+AGG | - | chr5.1:7898624-7898643 | None:intergenic | 25.0% |
!! | GTTTCTCATATAGTTTTTCT+AGG | - | chr5.1:7899005-7899024 | None:intergenic | 25.0% |
!!! | AGAGCATTTTTTTCATTTGA+TGG | + | chr5.1:7899260-7899279 | MS.gene20304:intron | 25.0% |
!!! | ATGTTGAGCTTTTAAAAATG+AGG | + | chr5.1:7900126-7900145 | MS.gene20304:CDS | 25.0% |
!!! | CATCAATTTGAGATTTTGAA+AGG | - | chr5.1:7900109-7900128 | None:intergenic | 25.0% |
!!! | TGGTGGTTATTTTCATTTTT+CGG | - | chr5.1:7897744-7897763 | None:intergenic | 25.0% |
!!! | TGTTGAGCTTTTAAAAATGA+GGG | + | chr5.1:7900127-7900146 | MS.gene20304:CDS | 25.0% |
!!! | TTTGTTTTAAATGTTCTAGC+AGG | + | chr5.1:7897429-7897448 | MS.gene20304:intron | 25.0% |
AAAACAAGCATAGCAAAGAT+GGG | + | chr5.1:7898773-7898792 | MS.gene20304:intron | 30.0% | |
AAATTCACCACAATCTTAAG+GGG | - | chr5.1:7898295-7898314 | None:intergenic | 30.0% | |
ACATAAATGTGACTGCAATA+TGG | + | chr5.1:7897670-7897689 | MS.gene20304:CDS | 30.0% | |
ACATATAAATCAATGGACCT+AGG | - | chr5.1:7899162-7899181 | None:intergenic | 30.0% | |
ACTGAGTGAGGAAAAAAATT+TGG | - | chr5.1:7898532-7898551 | None:intergenic | 30.0% | |
AGTTATATAGTAACACACCT+AGG | - | chr5.1:7897613-7897632 | None:intergenic | 30.0% | |
ATAAATGTGACTGCAATATG+GGG | + | chr5.1:7897672-7897691 | MS.gene20304:CDS | 30.0% | |
CAAATTCACCACAATCTTAA+GGG | - | chr5.1:7898296-7898315 | None:intergenic | 30.0% | |
CATAAATGTGACTGCAATAT+GGG | + | chr5.1:7897671-7897690 | MS.gene20304:CDS | 30.0% | |
CTGAAATTGTTTACCTCAAT+AGG | + | chr5.1:7899476-7899495 | MS.gene20304:intron | 30.0% | |
CTGTCCACTGAATAATTTAT+TGG | + | chr5.1:7899677-7899696 | MS.gene20304:intron | 30.0% | |
CTTATGATTTACCTGTCATT+AGG | - | chr5.1:7899970-7899989 | None:intergenic | 30.0% | |
CTTCCAAAGAACAAATATCA+AGG | + | chr5.1:7897844-7897863 | MS.gene20304:CDS | 30.0% | |
GTTAGAACTAGTTGAAATTG+TGG | - | chr5.1:7899199-7899218 | None:intergenic | 30.0% | |
TAAAACAAGCATAGCAAAGA+TGG | + | chr5.1:7898772-7898791 | MS.gene20304:intron | 30.0% | |
TAAATGTTCTAGCAGGTTAT+AGG | + | chr5.1:7897436-7897455 | MS.gene20304:intron | 30.0% | |
TCAGAAAACAATATACCTTG+TGG | - | chr5.1:7898110-7898129 | None:intergenic | 30.0% | |
TGGATTATATTGAACTATGG+CGG | - | chr5.1:7897778-7897797 | None:intergenic | 30.0% | |
TTGTTGACAGTAACTTTATG+AGG | - | chr5.1:7899524-7899543 | None:intergenic | 30.0% | |
! | CATTTAAAACTTTGGTATGC+TGG | - | chr5.1:7898038-7898057 | None:intergenic | 30.0% |
! | TGATGATTCTTTTCTAAGCA+TGG | + | chr5.1:7898154-7898173 | MS.gene20304:intron | 30.0% |
!! | ACTAGTTCTAACATGTAACT+CGG | + | chr5.1:7899207-7899226 | MS.gene20304:intron | 30.0% |
!! | GGTGGTTATTTTCATTTTTC+GGG | - | chr5.1:7897743-7897762 | None:intergenic | 30.0% |
!! | GTGGTTATTTTCATTTTTCG+GGG | - | chr5.1:7897742-7897761 | None:intergenic | 30.0% |
!! | GTTGAGCTTTTAAAAATGAG+GGG | + | chr5.1:7900128-7900147 | MS.gene20304:CDS | 30.0% |
!! | TGGTTATTTTCATTTTTCGG+GGG | - | chr5.1:7897741-7897760 | None:intergenic | 30.0% |
!! | TTGAGATTTTGAAAGGATGT+TGG | - | chr5.1:7900102-7900121 | None:intergenic | 30.0% |
!!! | ATATTTTGGTACCAGAAGAA+TGG | - | chr5.1:7899239-7899258 | None:intergenic | 30.0% |
!!! | TGGCAATGTTTTTTCAATGA+TGG | + | chr5.1:7898330-7898349 | MS.gene20304:intron | 30.0% |
AAACAAGCATAGCAAAGATG+GGG | + | chr5.1:7898774-7898793 | MS.gene20304:intron | 35.0% | |
AAACTTGGTTTCTTGGAACT+TGG | + | chr5.1:7899604-7899623 | MS.gene20304:intron | 35.0% | |
AAAGCTGGAGTAGTCAAATA+CGG | + | chr5.1:7897321-7897340 | MS.gene20304:CDS | 35.0% | |
AACAAAACTGAAGCATATGG+TGG | + | chr5.1:7899539-7899558 | MS.gene20304:CDS | 35.0% | |
AATTTGCAACGTCAATCATG+TGG | + | chr5.1:7898310-7898329 | MS.gene20304:intron | 35.0% | |
ACAACATTAGAGAGAGAGTT+GGG | + | chr5.1:7898846-7898865 | MS.gene20304:intron | 35.0% | |
ACAATATCCCCTTAAGATTG+TGG | + | chr5.1:7898285-7898304 | MS.gene20304:intron | 35.0% | |
ACACGAGAATAACTGAATGT+TGG | + | chr5.1:7898726-7898745 | MS.gene20304:intron | 35.0% | |
ACATTCAGTTATTCTCGTGT+TGG | - | chr5.1:7898726-7898745 | None:intergenic | 35.0% | |
ACCTACAGTAGAAATGATAG+TGG | + | chr5.1:7898874-7898893 | MS.gene20304:intron | 35.0% | |
ACTAAATGGTCTGTGATTCT+TGG | + | chr5.1:7897908-7897927 | MS.gene20304:intron | 35.0% | |
AGTAACTTTATGAGGTTTGG+TGG | - | chr5.1:7899516-7899535 | None:intergenic | 35.0% | |
CACGAGAATAACTGAATGTT+GGG | + | chr5.1:7898727-7898746 | MS.gene20304:intron | 35.0% | |
CATTTGACCTATGAAGGAAT+TGG | - | chr5.1:7898618-7898637 | None:intergenic | 35.0% | |
CTCTCCTTATACAGAATCTA+CGG | - | chr5.1:7898938-7898957 | None:intergenic | 35.0% | |
GACAGGTAAATCATAAGTAC+AGG | + | chr5.1:7899973-7899992 | MS.gene20304:intron | 35.0% | |
GACAGTAACTTTATGAGGTT+TGG | - | chr5.1:7899519-7899538 | None:intergenic | 35.0% | |
GCAAATTCACCACAATCTTA+AGG | - | chr5.1:7898297-7898316 | None:intergenic | 35.0% | |
GTCAACAAAACTGAAGCATA+TGG | + | chr5.1:7899536-7899555 | MS.gene20304:CDS | 35.0% | |
GTTACTGAAACTTGGTTTCT+TGG | + | chr5.1:7899597-7899616 | MS.gene20304:intron | 35.0% | |
TAAGCTATGAACAGGACAAA+TGG | + | chr5.1:7897643-7897662 | MS.gene20304:intron | 35.0% | |
TACCATTAATGAGGCAATCA+AGG | - | chr5.1:7898477-7898496 | None:intergenic | 35.0% | |
TACCTCAATAGGATCAATAC+CGG | + | chr5.1:7899487-7899506 | MS.gene20304:intron | 35.0% | |
TACCTCTATATAAGCAGCAA+TGG | - | chr5.1:7898448-7898467 | None:intergenic | 35.0% | |
TACCTTGATTGCCTCATTAA+TGG | + | chr5.1:7898472-7898491 | MS.gene20304:intron | 35.0% | |
TACTCTTCGTTACTGAAACT+TGG | + | chr5.1:7899589-7899608 | MS.gene20304:intron | 35.0% | |
TAGTGGGAGTGAAATTCTAT+TGG | + | chr5.1:7899843-7899862 | MS.gene20304:intron | 35.0% | |
TATAAGGAGAGTAGATCAGA+TGG | + | chr5.1:7898947-7898966 | MS.gene20304:intron | 35.0% | |
TCCACTATCATTTCTACTGT+AGG | - | chr5.1:7898878-7898897 | None:intergenic | 35.0% | |
TCTCCTTATACAGAATCTAC+GGG | - | chr5.1:7898937-7898956 | None:intergenic | 35.0% | |
TGACAATCGAGTCGAATATA+AGG | - | chr5.1:7898392-7898411 | None:intergenic | 35.0% | |
TGTTATGGTTACACTGTTAC+TGG | + | chr5.1:7899708-7899727 | MS.gene20304:intron | 35.0% | |
! | AATGGTCTGTCATTTGAGAT+AGG | - | chr5.1:7898591-7898610 | None:intergenic | 35.0% |
! | ATGTGCTTTAAGCTATGAAC+AGG | + | chr5.1:7897635-7897654 | MS.gene20304:intron | 35.0% |
! | GCTATAATTTGTGTACCACA+AGG | + | chr5.1:7898092-7898111 | MS.gene20304:intron | 35.0% |
! | TCATTTGAGATAGGATAGTG+TGG | - | chr5.1:7898582-7898601 | None:intergenic | 35.0% |
! | TCTTTTCCTGCAAACTTTTC+TGG | + | chr5.1:7899643-7899662 | MS.gene20304:intron | 35.0% |
!! | CAGGAAAAGATACTGCTTTT+TGG | - | chr5.1:7899633-7899652 | None:intergenic | 35.0% |
!! | CTAGTTCTAACATGTAACTC+GGG | + | chr5.1:7899208-7899227 | MS.gene20304:intron | 35.0% |
!! | GTAGAAATGATAGTGGAAAC+AGG | + | chr5.1:7898881-7898900 | MS.gene20304:intron | 35.0% |
!! | TAGTTCTAACATGTAACTCG+GGG | + | chr5.1:7899209-7899228 | MS.gene20304:intron | 35.0% |
!! | TCTGCTTTTGGAGAATCTTT+TGG | - | chr5.1:7900068-7900087 | None:intergenic | 35.0% |
!!! | TTATTTTCATTTTTCGGGGG+TGG | - | chr5.1:7897738-7897757 | None:intergenic | 35.0% |
AAGCTGGAGTAGTCAAATAC+GGG | + | chr5.1:7897322-7897341 | MS.gene20304:CDS | 40.0% | |
AATGGTCTGTGATTCTTGGT+TGG | + | chr5.1:7897912-7897931 | MS.gene20304:intron | 40.0% | |
ACACGCACAAACTCACATAT+AGG | + | chr5.1:7898203-7898222 | MS.gene20304:intron | 40.0% | |
AGACCCGTAGATTCTGTATA+AGG | + | chr5.1:7898931-7898950 | MS.gene20304:intron | 40.0% | |
AGCCTTTCTTAAACACAGGA+AGG | - | chr5.1:7899353-7899372 | None:intergenic | 40.0% | |
AGTCTGACATACCTAATGAC+AGG | + | chr5.1:7899956-7899975 | MS.gene20304:intron | 40.0% | |
ATATGGGCATTCTCTGTAGT+GGG | + | chr5.1:7899827-7899846 | MS.gene20304:intron | 40.0% | |
ATTCCACCAGAAACTGAAAG+AGG | - | chr5.1:7897819-7897838 | None:intergenic | 40.0% | |
ATTTGAACGCATGCGCAAAA+TGG | - | chr5.1:7897391-7897410 | None:intergenic | 40.0% | |
CAACATTAGAGAGAGAGTTG+GGG | + | chr5.1:7898847-7898866 | MS.gene20304:intron | 40.0% | |
CTCTATATAAGCAGCAATGG+CGG | - | chr5.1:7898445-7898464 | None:intergenic | 40.0% | |
GAAATCTGGGTCTGTAAGAA+TGG | - | chr5.1:7897364-7897383 | None:intergenic | 40.0% | |
GACAACATTAGAGAGAGAGT+TGG | + | chr5.1:7898845-7898864 | MS.gene20304:intron | 40.0% | |
GAGAATAACTGAATGTTGGG+CGG | + | chr5.1:7898730-7898749 | MS.gene20304:intron | 40.0% | |
GCGTTCAAATGTAGATCTCA+AGG | + | chr5.1:7897401-7897420 | MS.gene20304:CDS | 40.0% | |
GCTAAGCCTTTCTTAAACAC+AGG | - | chr5.1:7899357-7899376 | None:intergenic | 40.0% | |
GTCATTAGGTATGTCAGACT+AGG | - | chr5.1:7899956-7899975 | None:intergenic | 40.0% | |
GTGGTAAGACTAGACAAGAT+AGG | + | chr5.1:7898813-7898832 | MS.gene20304:intron | 40.0% | |
GTTGGAAATGTTTCTCTCCT+AGG | + | chr5.1:7899142-7899161 | MS.gene20304:intron | 40.0% | |
TAGTCGAACTACGCACATAT+GGG | + | chr5.1:7899811-7899830 | MS.gene20304:intron | 40.0% | |
TGCCTTCCTGTGTTTAAGAA+AGG | + | chr5.1:7899348-7899367 | MS.gene20304:intron | 40.0% | |
TTGTAAACTTGATCGCAAGC+AGG | - | chr5.1:7898656-7898675 | None:intergenic | 40.0% | |
! | GCAAAATGGTGCTGAAATCT+GGG | - | chr5.1:7897377-7897396 | None:intergenic | 40.0% |
! | GCATCAGTTTTCTCTGCTTT+TGG | - | chr5.1:7900080-7900099 | None:intergenic | 40.0% |
! | TAAGGCTTGATGGTTGTTGT+TGG | + | chr5.1:7899124-7899143 | MS.gene20304:intron | 40.0% |
!! | TCGTGTTGGTTCTTATACAG+AGG | - | chr5.1:7898712-7898731 | None:intergenic | 40.0% |
!!! | GGAAGAGCATCTTCTTTTCT+CGG | - | chr5.1:7900024-7900043 | None:intergenic | 40.0% |
AAGGAGAGTAGATCAGATGG+AGG | + | chr5.1:7898950-7898969 | MS.gene20304:intron | 45.0% | |
AGCTGGAGTAGTCAAATACG+GGG | + | chr5.1:7897323-7897342 | MS.gene20304:CDS | 45.0% | |
ATATTGAACTATGGCGGTCG+AGG | - | chr5.1:7897772-7897791 | None:intergenic | 45.0% | |
ATGCTCTTCCTTGTTACTCC+TGG | + | chr5.1:7900034-7900053 | MS.gene20304:CDS | 45.0% | |
CATATGGGCATTCTCTGTAG+TGG | + | chr5.1:7899826-7899845 | MS.gene20304:intron | 45.0% | |
CCAGAAACTGAAAGAGGCTT+AGG | - | chr5.1:7897813-7897832 | None:intergenic | 45.0% | |
CCTAAGCCTCTTTCAGTTTC+TGG | + | chr5.1:7897810-7897829 | MS.gene20304:CDS | 45.0% | |
CTTAGTGGGATAAGGCTTGA+TGG | + | chr5.1:7899114-7899133 | MS.gene20304:intron | 45.0% | |
CTTCCTTGTTACTCCTGGAA+GGG | + | chr5.1:7900039-7900058 | MS.gene20304:CDS | 45.0% | |
GAGGATAGTCAGATCACTAG+AGG | + | chr5.1:7898969-7898988 | MS.gene20304:intron | 45.0% | |
GCTATGAACAGGACAAATGG+AGG | + | chr5.1:7897646-7897665 | MS.gene20304:intron | 45.0% | |
GTAACTGATCTCACTGAGTG+AGG | - | chr5.1:7898544-7898563 | None:intergenic | 45.0% | |
GTAGTCGAACTACGCACATA+TGG | + | chr5.1:7899810-7899829 | MS.gene20304:intron | 45.0% | |
GTTTGCAAAAGCAGCAACGA+AGG | + | chr5.1:7900280-7900299 | MS.gene20304:CDS | 45.0% | |
TCAAATACGGGGCTGGAAAA+TGG | + | chr5.1:7897334-7897353 | MS.gene20304:CDS | 45.0% | |
TCTGCAGTCCATTTCTGCTT+AGG | - | chr5.1:7897285-7897304 | None:intergenic | 45.0% | |
TCTTCCTTGTTACTCCTGGA+AGG | + | chr5.1:7900038-7900057 | MS.gene20304:CDS | 45.0% | |
! | AAGCCTCTTTCAGTTTCTGG+TGG | + | chr5.1:7897813-7897832 | MS.gene20304:CDS | 45.0% |
! | AAGCCTTATCCCACTAAGTG+GGG | - | chr5.1:7899112-7899131 | None:intergenic | 45.0% |
! | CAAGCCTTATCCCACTAAGT+GGG | - | chr5.1:7899113-7899132 | None:intergenic | 45.0% |
! | CGCAAAATGGTGCTGAAATC+TGG | - | chr5.1:7897378-7897397 | None:intergenic | 45.0% |
! | CGCCATTGCTGCTTATATAG+AGG | + | chr5.1:7898443-7898462 | MS.gene20304:CDS | 45.0% |
! | GAGCTTAGGGGAACTTGTTT+AGG | - | chr5.1:7899298-7899317 | None:intergenic | 45.0% |
! | GGTTTGAGATGCTACTGCTA+CGG | + | chr5.1:7897491-7897510 | MS.gene20304:intron | 45.0% |
! | GTTAAGAGCTTGTTCTTGCC+AGG | - | chr5.1:7899324-7899343 | None:intergenic | 45.0% |
! | TCAAGCCTTATCCCACTAAG+TGG | - | chr5.1:7899114-7899133 | None:intergenic | 45.0% |
!! | CGACTCGATTGTCAAGTTGA+AGG | + | chr5.1:7898398-7898417 | MS.gene20304:CDS | 45.0% |
!! | CTGCAAACTTTTCTGGCGAA+GGG | + | chr5.1:7899650-7899669 | MS.gene20304:intron | 45.0% |
!! | GAAATGGACTGCAGAAGAAG+AGG | + | chr5.1:7897290-7897309 | MS.gene20304:CDS | 45.0% |
!! | GACCGGTATTGATCCTATTG+AGG | - | chr5.1:7899492-7899511 | None:intergenic | 45.0% |
!! | GTCAAGTTGAAGGAGCCAAA+GGG | + | chr5.1:7898408-7898427 | MS.gene20304:CDS | 45.0% |
!! | TGTCAAGTTGAAGGAGCCAA+AGG | + | chr5.1:7898407-7898426 | MS.gene20304:CDS | 45.0% |
!! | TTATGAGGTTTGGTGGAGAC+CGG | - | chr5.1:7899509-7899528 | None:intergenic | 45.0% |
!!! | TTTCATTTTTCGGGGGTGGT+AGG | - | chr5.1:7897734-7897753 | None:intergenic | 45.0% |
AACAGCTGAAGCTGAAGCAG+AGG | + | chr5.1:7900247-7900266 | MS.gene20304:CDS | 50.0% | |
AATATGGGGATCCAGGCAGA+AGG | + | chr5.1:7897686-7897705 | MS.gene20304:CDS | 50.0% | |
ACTAAGTGGGGTCTGCTACA+TGG | - | chr5.1:7899100-7899119 | None:intergenic | 50.0% | |
AGACCCCACTTAGTGGGATA+AGG | + | chr5.1:7899106-7899125 | MS.gene20304:intron | 50.0% | |
AGCAGCTGCAAAAGCAGTTG+CGG | + | chr5.1:7900175-7900194 | MS.gene20304:CDS | 50.0% | |
AGTCAGATCACTAGAGGCAG+AGG | + | chr5.1:7898975-7898994 | MS.gene20304:intron | 50.0% | |
ATGTAGCAGACCCCACTTAG+TGG | + | chr5.1:7899099-7899118 | MS.gene20304:intron | 50.0% | |
CAAAGATGGGGATGTTGCGT+TGG | + | chr5.1:7898786-7898805 | MS.gene20304:intron | 50.0% | |
CCTTCGCCAGAAAAGTTTGC+AGG | - | chr5.1:7899652-7899671 | None:intergenic | 50.0% | |
CTGAAGCATATGGTGGCAAG+CGG | + | chr5.1:7899546-7899565 | MS.gene20304:CDS | 50.0% | |
GGCAAGCGGCAAATTAGTGA+AGG | + | chr5.1:7899560-7899579 | MS.gene20304:CDS | 50.0% | |
TCTTGCCAGGTGAGAGCTTA+GGG | - | chr5.1:7899311-7899330 | None:intergenic | 50.0% | |
TGACTGCAATATGGGGATCC+AGG | + | chr5.1:7897679-7897698 | MS.gene20304:CDS | 50.0% | |
TGGGTGCTCCTAAGCAGAAA+TGG | + | chr5.1:7897274-7897293 | MS.gene20304:CDS | 50.0% | |
TGTAGCAGACCCCACTTAGT+GGG | + | chr5.1:7899100-7899119 | MS.gene20304:intron | 50.0% | |
TTCTTGCCAGGTGAGAGCTT+AGG | - | chr5.1:7899312-7899331 | None:intergenic | 50.0% | |
! | AATCTTTTGGCCTCCCTTCC+AGG | - | chr5.1:7900055-7900074 | None:intergenic | 50.0% |
! | TGCAAGTTTTGCCTTCTGCC+TGG | - | chr5.1:7897700-7897719 | None:intergenic | 50.0% |
!! | ATGATAGTGGAAACAGGCGC+AGG | + | chr5.1:7898887-7898906 | MS.gene20304:intron | 50.0% |
!! | CCTGCAAACTTTTCTGGCGA+AGG | + | chr5.1:7899649-7899668 | MS.gene20304:intron | 50.0% |
AGCTGCAAAAGCAGTTGCGG+AGG | + | chr5.1:7900178-7900197 | MS.gene20304:CDS | 55.0% | |
AGTTCCCCTAAGCTCTCACC+TGG | + | chr5.1:7899303-7899322 | MS.gene20304:intron | 55.0% | |
CCTCCCTTCCAGGAGTAACA+AGG | - | chr5.1:7900045-7900064 | None:intergenic | 55.0% | |
CCTTGTTACTCCTGGAAGGG+AGG | + | chr5.1:7900042-7900061 | MS.gene20304:CDS | 55.0% | |
CTCGGGGACTTCCATTCTTC+TGG | + | chr5.1:7899225-7899244 | MS.gene20304:intron | 55.0% | |
CTTGCCAGGTGAGAGCTTAG+GGG | - | chr5.1:7899310-7899329 | None:intergenic | 55.0% | |
GAACTATGGCGGTCGAGGTT+GGG | - | chr5.1:7897767-7897786 | None:intergenic | 55.0% | |
GCGGCAATGTCAGAACCCTT+TGG | - | chr5.1:7898426-7898445 | None:intergenic | 55.0% | |
GGAGTAGTCAAATACGGGGC+TGG | + | chr5.1:7897327-7897346 | MS.gene20304:CDS | 55.0% | |
GGCTTAGGAGCTGCAACTTC+TGG | - | chr5.1:7897798-7897817 | None:intergenic | 55.0% | |
GGGATGTTGCGTTGGATGTG+TGG | + | chr5.1:7898794-7898813 | MS.gene20304:intron | 55.0% | |
TGAACTATGGCGGTCGAGGT+TGG | - | chr5.1:7897768-7897787 | None:intergenic | 55.0% | |
TGAGGCTGAGACAGCAGCAA+GGG | + | chr5.1:7900217-7900236 | MS.gene20304:CDS | 55.0% | |
TGCTGTCTCAGCCTCAGCAA+TGG | - | chr5.1:7900213-7900232 | None:intergenic | 55.0% | |
! | ATAGTGGAAACAGGCGCAGG+TGG | + | chr5.1:7898890-7898909 | MS.gene20304:intron | 55.0% |
!! | GAAGAGGCAGCTCTGAAAGC+TGG | + | chr5.1:7897306-7897325 | MS.gene20304:CDS | 55.0% |
CTGAGGCTGAGACAGCAGCA+AGG | + | chr5.1:7900216-7900235 | MS.gene20304:CDS | 60.0% | |
GGCAGAAGCTGCCATTGCTG+AGG | + | chr5.1:7900199-7900218 | MS.gene20304:CDS | 60.0% | |
! | GAGGGGTGTGACAGCTCAAG+AGG | + | chr5.1:7900145-7900164 | MS.gene20304:CDS | 60.0% |
CTATGGCGGTCGAGGTTGGG+TGG | - | chr5.1:7897764-7897783 | None:intergenic | 65.0% | |
GGCTGAGACAGCAGCAAGGG+AGG | + | chr5.1:7900220-7900239 | MS.gene20304:CDS | 65.0% | |
TGGCGGTCGAGGTTGGGTGG+TGG | - | chr5.1:7897761-7897780 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.1 | gene | 7897273 | 7900410 | 7897273 | ID=MS.gene20304 |
chr5.1 | mRNA | 7897273 | 7900410 | 7897273 | ID=MS.gene20304.t1;Parent=MS.gene20304 |
chr5.1 | exon | 7897273 | 7897422 | 7897273 | ID=MS.gene20304.t1.exon1;Parent=MS.gene20304.t1 |
chr5.1 | CDS | 7897273 | 7897422 | 7897273 | ID=cds.MS.gene20304.t1;Parent=MS.gene20304.t1 |
chr5.1 | exon | 7897657 | 7897865 | 7897657 | ID=MS.gene20304.t1.exon2;Parent=MS.gene20304.t1 |
chr5.1 | CDS | 7897657 | 7897865 | 7897657 | ID=cds.MS.gene20304.t1;Parent=MS.gene20304.t1 |
chr5.1 | exon | 7898380 | 7898464 | 7898380 | ID=MS.gene20304.t1.exon3;Parent=MS.gene20304.t1 |
chr5.1 | CDS | 7898380 | 7898464 | 7898380 | ID=cds.MS.gene20304.t1;Parent=MS.gene20304.t1 |
chr5.1 | exon | 7899498 | 7899581 | 7899498 | ID=MS.gene20304.t1.exon4;Parent=MS.gene20304.t1 |
chr5.1 | CDS | 7899498 | 7899581 | 7899498 | ID=cds.MS.gene20304.t1;Parent=MS.gene20304.t1 |
chr5.1 | exon | 7899978 | 7900330 | 7899978 | ID=MS.gene20304.t1.exon5;Parent=MS.gene20304.t1 |
chr5.1 | CDS | 7899978 | 7900330 | 7899978 | ID=cds.MS.gene20304.t1;Parent=MS.gene20304.t1 |
chr5.1 | exon | 7900401 | 7900410 | 7900401 | ID=MS.gene20304.t1.exon6;Parent=MS.gene20304.t1 |
chr5.1 | CDS | 7900401 | 7900410 | 7900401 | ID=cds.MS.gene20304.t1;Parent=MS.gene20304.t1 |
Gene Sequence |
Protein sequence |