AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene20304


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene20304.t1 MTR_5g015340 98.976 293 3 0 1 293 1 293 0.0 586
MS.gene20304.t1 MTR_5g015340 98.976 293 3 0 1 293 1 293 0.0 586
MS.gene20304.t1 MTR_5g015340 98.976 293 3 0 1 293 1 293 0.0 582
MS.gene20304.t1 MTR_4g097130 65.372 309 90 6 1 293 1 308 6.48e-103 303
MS.gene20304.t1 MTR_4g097130 65.372 309 90 6 1 293 1 308 7.88e-103 303
MS.gene20304.t1 MTR_4g097130 64.013 314 91 6 1 293 1 313 1.24e-101 300
MS.gene20304.t1 MTR_2g031870 48.548 241 117 5 1 236 1 239 3.92e-66 209
MS.gene20304.t1 MTR_8g494240 48.117 239 119 5 1 236 1 237 1.38e-63 202
MS.gene20304.t1 MTR_8g494240 48.117 239 119 5 1 236 1 237 1.72e-63 202
MS.gene20304.t1 MTR_8g494240 48.117 239 119 5 1 236 1 237 2.57e-62 202
MS.gene20304.t1 MTR_8g092810 40.316 253 137 4 1 240 1 252 3.45e-50 172
MS.gene20304.t1 MTR_2g031870 45.205 292 127 6 1 287 1 264 4.27e-44 151
MS.gene20304.t1 MTR_0095s0040 49.686 159 66 5 1 149 1 155 3.68e-38 135
MS.gene20304.t1 MTR_1g041765 66.292 89 28 1 1 89 1 87 6.89e-33 120
MS.gene20304.t1 MTR_8g018410 32.862 283 159 6 1 270 1 265 9.00e-32 119
MS.gene20304.t1 MTR_2g099610 39.048 210 105 3 1 187 1 210 1.34e-31 119
MS.gene20304.t1 MTR_1g088180 38.017 121 71 2 121 241 295 411 6.19e-14 72.0
MS.gene20304.t1 MTR_3g467090 60.377 53 17 2 5 56 569 618 7.10e-12 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene20304.t1 AT5G67580 53.925 293 131 1 1 289 1 293 1.36e-75 233
MS.gene20304.t1 AT5G67580 53.925 293 131 1 1 289 1 293 1.36e-75 233
MS.gene20304.t1 AT1G49950 48.971 243 116 5 1 238 1 240 1.15e-70 221
MS.gene20304.t1 AT1G49950 48.971 243 116 5 1 238 1 240 1.15e-70 221
MS.gene20304.t1 AT1G49950 48.971 243 116 5 1 238 1 240 1.15e-70 221
MS.gene20304.t1 AT3G49850 51.186 295 132 5 1 289 1 289 2.95e-66 209
MS.gene20304.t1 AT3G49850 51.186 295 132 5 1 289 1 289 2.95e-66 209
MS.gene20304.t1 AT1G72740 33.449 287 168 5 1 284 1 267 9.39e-32 119
MS.gene20304.t1 AT1G72740 33.449 287 174 6 1 284 1 273 3.64e-30 115
MS.gene20304.t1 AT1G17520 36.500 200 110 3 1 187 1 196 1.50e-29 114
MS.gene20304.t1 AT1G17520 32.990 291 161 7 1 275 1 273 3.87e-29 113
MS.gene20304.t1 AT1G17520 36.816 201 109 4 1 187 1 197 7.24e-29 112
MS.gene20304.t1 AT1G17520 33.219 292 160 8 1 275 1 274 1.55e-28 111

Find 72 sgRNAs with CRISPR-Local

Find 216 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTAAGCCTCTTTCAGTTTC+TGG 0.037607 5.1:+7897810 MS.gene20304:CDS
GGCTTAGGAGCTGCAACTTC+TGG 0.214227 5.1:-7897795 None:intergenic
AATGCAGAAGACTTAATATT+TGG 0.225595 5.1:+7900309 MS.gene20304:CDS
CGCAAAATGGTGCTGAAATC+TGG 0.244024 5.1:-7897375 None:intergenic
TAACCTTGATATTTGTTCTT+TGG 0.249384 5.1:-7897847 None:intergenic
ACATAAATGTGACTGCAATA+TGG 0.284211 5.1:+7897670 MS.gene20304:CDS
TTCTGGATTATATTGAACTA+TGG 0.296937 5.1:-7897778 None:intergenic
CTAGGAGAAAGCATTCAAAA+TGG 0.335895 5.1:-7900402 None:intergenic
ATTTGAACGCATGCGCAAAA+TGG 0.355071 5.1:-7897388 None:intergenic
CATAAATGTGACTGCAATAT+GGG 0.356271 5.1:+7897671 MS.gene20304:CDS
TGACAATCGAGTCGAATATA+AGG 0.364822 5.1:-7898389 None:intergenic
TCAAATACGGGGCTGGAAAA+TGG 0.375403 5.1:+7897334 MS.gene20304:CDS
TCTGCAGTCCATTTCTGCTT+AGG 0.379164 5.1:-7897282 None:intergenic
GAACTATGGCGGTCGAGGTT+GGG 0.406154 5.1:-7897764 None:intergenic
AGCAGCTGCAAAAGCAGTTG+CGG 0.409911 5.1:+7900175 MS.gene20304:CDS
GACAGTAACTTTATGAGGTT+TGG 0.411444 5.1:-7899516 None:intergenic
CGCCATTGCTGCTTATATAG+AGG 0.411827 5.1:+7898443 MS.gene20304:CDS
ATGCTCTTCCTTGTTACTCC+TGG 0.423977 5.1:+7900034 MS.gene20304:CDS
TGGGTGCTCCTAAGCAGAAA+TGG 0.425779 5.1:+7897274 MS.gene20304:CDS
GAAGAGGCAGCTCTGAAAGC+TGG 0.428221 5.1:+7897306 MS.gene20304:CDS
AGCTGCAAAAGCAGTTGCGG+AGG 0.430575 5.1:+7900178 MS.gene20304:CDS
TTGTTGACAGTAACTTTATG+AGG 0.436494 5.1:-7899521 None:intergenic
CCAGAAACTGAAAGAGGCTT+AGG 0.456807 5.1:-7897810 None:intergenic
CGACTCGATTGTCAAGTTGA+AGG 0.467379 5.1:+7898398 MS.gene20304:CDS
TGAACTATGGCGGTCGAGGT+TGG 0.475508 5.1:-7897765 None:intergenic
AAAGCTGGAGTAGTCAAATA+CGG 0.485337 5.1:+7897321 MS.gene20304:CDS
GTCAACAAAACTGAAGCATA+TGG 0.488294 5.1:+7899536 MS.gene20304:CDS
TAAGCTATGAACAGGACAAA+TGG 0.495183 5.1:+7897643 MS.gene20304:intron
TGACTGCAATATGGGGATCC+AGG 0.496295 5.1:+7897679 MS.gene20304:CDS
AAGCCTCTTTCAGTTTCTGG+TGG 0.504900 5.1:+7897813 MS.gene20304:CDS
CTTCCTTGTTACTCCTGGAA+GGG 0.505904 5.1:+7900039 MS.gene20304:CDS
GAAATCTGGGTCTGTAAGAA+TGG 0.507475 5.1:-7897361 None:intergenic
GCGGCAATGTCAGAACCCTT+TGG 0.508392 5.1:-7898423 None:intergenic
TCTTCCTTGTTACTCCTGGA+AGG 0.509910 5.1:+7900038 MS.gene20304:CDS
TTATGAGGTTTGGTGGAGAC+CGG 0.510215 5.1:-7899506 None:intergenic
GACAGGTAAATCATAAGTAC+AGG 0.511866 5.1:+7899973 MS.gene20304:intron
AGTAACTTTATGAGGTTTGG+TGG 0.512273 5.1:-7899513 None:intergenic
TAGGAGAAAGCATTCAAAAT+GGG 0.512658 5.1:-7900401 None:intergenic
TGCTGTCTCAGCCTCAGCAA+TGG 0.514472 5.1:-7900210 None:intergenic
GGCTGAGACAGCAGCAAGGG+AGG 0.514772 5.1:+7900220 MS.gene20304:CDS
TGGCGGTCGAGGTTGGGTGG+TGG 0.532625 5.1:-7897758 None:intergenic
GGAGTAGTCAAATACGGGGC+TGG 0.532847 5.1:+7897327 MS.gene20304:CDS
CTTCCAAAGAACAAATATCA+AGG 0.532967 5.1:+7897844 MS.gene20304:CDS
AAGCTGGAGTAGTCAAATAC+GGG 0.536563 5.1:+7897322 MS.gene20304:CDS
GCAAAATGGTGCTGAAATCT+GGG 0.539501 5.1:-7897374 None:intergenic
ATATTGAACTATGGCGGTCG+AGG 0.543535 5.1:-7897769 None:intergenic
CCTTGTTACTCCTGGAAGGG+AGG 0.547136 5.1:+7900042 MS.gene20304:CDS
GGCAGAAGCTGCCATTGCTG+AGG 0.547830 5.1:+7900199 MS.gene20304:CDS
TACCTCTATATAAGCAGCAA+TGG 0.560953 5.1:-7898445 None:intergenic
TGAGGCTGAGACAGCAGCAA+GGG 0.562956 5.1:+7900217 MS.gene20304:CDS
CTATGGCGGTCGAGGTTGGG+TGG 0.567809 5.1:-7897761 None:intergenic
TTCTGCTTAGGAGCACCCAT+TGG 0.569658 5.1:-7897270 None:intergenic
TACCTCAATAGGATCAATAC+CGG 0.570066 5.1:+7899487 MS.gene20304:intron
GAAATGGACTGCAGAAGAAG+AGG 0.574527 5.1:+7897290 MS.gene20304:CDS
ATTCCACCAGAAACTGAAAG+AGG 0.576366 5.1:-7897816 None:intergenic
TGTCAAGTTGAAGGAGCCAA+AGG 0.577322 5.1:+7898407 MS.gene20304:CDS
GCGTTCAAATGTAGATCTCA+AGG 0.582023 5.1:+7897401 MS.gene20304:CDS
CTCTATATAAGCAGCAATGG+CGG 0.582614 5.1:-7898442 None:intergenic
GTCAAGTTGAAGGAGCCAAA+GGG 0.586146 5.1:+7898408 MS.gene20304:CDS
GAGGGGTGTGACAGCTCAAG+AGG 0.591616 5.1:+7900145 MS.gene20304:CDS
CCTCCCTTCCAGGAGTAACA+AGG 0.596501 5.1:-7900042 None:intergenic
CTGAGGCTGAGACAGCAGCA+AGG 0.616768 5.1:+7900216 MS.gene20304:CDS
AACAGCTGAAGCTGAAGCAG+AGG 0.618779 5.1:+7900247 MS.gene20304:CDS
GTTTGCAAAAGCAGCAACGA+AGG 0.621698 5.1:+7900280 MS.gene20304:CDS
CTGAAGCATATGGTGGCAAG+CGG 0.627992 5.1:+7899546 MS.gene20304:CDS
AATATGGGGATCCAGGCAGA+AGG 0.633799 5.1:+7897686 MS.gene20304:CDS
TGGATTATATTGAACTATGG+CGG 0.635820 5.1:-7897775 None:intergenic
GGCAAGCGGCAAATTAGTGA+AGG 0.638026 5.1:+7899560 MS.gene20304:CDS
GCTATGAACAGGACAAATGG+AGG 0.639785 5.1:+7897646 MS.gene20304:intron
ATAAATGTGACTGCAATATG+GGG 0.648699 5.1:+7897672 MS.gene20304:CDS
AACAAAACTGAAGCATATGG+TGG 0.677408 5.1:+7899539 MS.gene20304:CDS
AGCTGGAGTAGTCAAATACG+GGG 0.718064 5.1:+7897323 MS.gene20304:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGTAATTTAATATGATACT+TGG + chr5.1:7899920-7899939 MS.gene20304:intron 15.0%
!! AGTAAAATTATTGTTATGTT+AGG + chr5.1:7897470-7897489 MS.gene20304:intron 15.0%
!! AGTAATATAGGTTTATTAAA+AGG - chr5.1:7899882-7899901 None:intergenic 15.0%
!! ATAAACAACATATAAATCAA+TGG - chr5.1:7899169-7899188 None:intergenic 15.0%
!! TATTACTGTAAGATAAATAT+TGG + chr5.1:7899895-7899914 MS.gene20304:intron 15.0%
!! TATTTATCTTACAGTAATAT+AGG - chr5.1:7899894-7899913 None:intergenic 15.0%
!!! AAAAAAATGCTCTAATATTT+TGG - chr5.1:7899253-7899272 None:intergenic 15.0%
!!! CATTAAATCATTTAAAACTT+TGG - chr5.1:7898046-7898065 None:intergenic 15.0%
!!! TAAAAGTATTTTAAACTCTT+TGG + chr5.1:7898679-7898698 MS.gene20304:intron 15.0%
!! ATAGGTCAAATGAAAAATAT+CGG + chr5.1:7898626-7898645 MS.gene20304:intron 20.0%
!! ATATCCAATAAATTATTCAG+TGG - chr5.1:7899684-7899703 None:intergenic 20.0%
!! ATTGGTAAAGAGAAATTAAT+TGG + chr5.1:7899750-7899769 MS.gene20304:intron 20.0%
!! GAAAAACTTAGATATTAATG+AGG + chr5.1:7899031-7899050 MS.gene20304:intron 20.0%
!! GATTATATATACCATTAATG+AGG - chr5.1:7898486-7898505 None:intergenic 20.0%
!! TCATATTAAACTATATACCT+AGG + chr5.1:7897593-7897612 MS.gene20304:intron 20.0%
!! TGAATACAAAAAATCTGTTA+TGG + chr5.1:7899788-7899807 MS.gene20304:intron 20.0%
!! TTACACTTTATAGAACTAAA+TGG + chr5.1:7897894-7897913 MS.gene20304:intron 20.0%
!! TTATTGGATATTGAATGTTA+TGG + chr5.1:7899693-7899712 MS.gene20304:intron 20.0%
!!! AAACATTTTGTAGTTGTAAT+TGG - chr5.1:7898231-7898250 None:intergenic 20.0%
!!! TCTTTTTAATAATGACAGAT+TGG + chr5.1:7898362-7898381 MS.gene20304:intron 20.0%
! AATGCAGAAGACTTAATATT+TGG + chr5.1:7900309-7900328 MS.gene20304:CDS 25.0%
! AGTTATTAGCAGAAAATGAT+TGG + chr5.1:7899732-7899751 MS.gene20304:intron 25.0%
! ATGCATTAAGTAATGTTTCT+TGG - chr5.1:7900347-7900366 None:intergenic 25.0%
! ATTTATTCCAATTCCTTCAT+AGG + chr5.1:7898608-7898627 MS.gene20304:intron 25.0%
! GTTCTATCATAAACCTTATT+TGG - chr5.1:7899059-7899078 None:intergenic 25.0%
! TAACCTTGATATTTGTTCTT+TGG - chr5.1:7897850-7897869 None:intergenic 25.0%
! TAACTGTTTACTTTATCACA+AGG + chr5.1:7897529-7897548 MS.gene20304:intron 25.0%
! TATAATAGTTATCAGCTCTA+AGG + chr5.1:7897995-7898014 MS.gene20304:intron 25.0%
! TATGAAGGAATTGGAATAAA+TGG - chr5.1:7898609-7898628 None:intergenic 25.0%
! TATTAATGAGGATCCAAATA+AGG + chr5.1:7899043-7899062 MS.gene20304:intron 25.0%
! TTAAGTAATGTTTCTTGGTA+AGG - chr5.1:7900342-7900361 None:intergenic 25.0%
! TTCTGGATTATATTGAACTA+TGG - chr5.1:7897781-7897800 None:intergenic 25.0%
!! AAACAAGTTGCAAACAATTT+TGG + chr5.1:7898070-7898089 MS.gene20304:intron 25.0%
!! ATTTTTCATTTGACCTATGA+AGG - chr5.1:7898624-7898643 None:intergenic 25.0%
!! GTTTCTCATATAGTTTTTCT+AGG - chr5.1:7899005-7899024 None:intergenic 25.0%
!!! AGAGCATTTTTTTCATTTGA+TGG + chr5.1:7899260-7899279 MS.gene20304:intron 25.0%
!!! ATGTTGAGCTTTTAAAAATG+AGG + chr5.1:7900126-7900145 MS.gene20304:CDS 25.0%
!!! CATCAATTTGAGATTTTGAA+AGG - chr5.1:7900109-7900128 None:intergenic 25.0%
!!! TGGTGGTTATTTTCATTTTT+CGG - chr5.1:7897744-7897763 None:intergenic 25.0%
!!! TGTTGAGCTTTTAAAAATGA+GGG + chr5.1:7900127-7900146 MS.gene20304:CDS 25.0%
!!! TTTGTTTTAAATGTTCTAGC+AGG + chr5.1:7897429-7897448 MS.gene20304:intron 25.0%
AAAACAAGCATAGCAAAGAT+GGG + chr5.1:7898773-7898792 MS.gene20304:intron 30.0%
AAATTCACCACAATCTTAAG+GGG - chr5.1:7898295-7898314 None:intergenic 30.0%
ACATAAATGTGACTGCAATA+TGG + chr5.1:7897670-7897689 MS.gene20304:CDS 30.0%
ACATATAAATCAATGGACCT+AGG - chr5.1:7899162-7899181 None:intergenic 30.0%
ACTGAGTGAGGAAAAAAATT+TGG - chr5.1:7898532-7898551 None:intergenic 30.0%
AGTTATATAGTAACACACCT+AGG - chr5.1:7897613-7897632 None:intergenic 30.0%
ATAAATGTGACTGCAATATG+GGG + chr5.1:7897672-7897691 MS.gene20304:CDS 30.0%
CAAATTCACCACAATCTTAA+GGG - chr5.1:7898296-7898315 None:intergenic 30.0%
CATAAATGTGACTGCAATAT+GGG + chr5.1:7897671-7897690 MS.gene20304:CDS 30.0%
CTGAAATTGTTTACCTCAAT+AGG + chr5.1:7899476-7899495 MS.gene20304:intron 30.0%
CTGTCCACTGAATAATTTAT+TGG + chr5.1:7899677-7899696 MS.gene20304:intron 30.0%
CTTATGATTTACCTGTCATT+AGG - chr5.1:7899970-7899989 None:intergenic 30.0%
CTTCCAAAGAACAAATATCA+AGG + chr5.1:7897844-7897863 MS.gene20304:CDS 30.0%
GTTAGAACTAGTTGAAATTG+TGG - chr5.1:7899199-7899218 None:intergenic 30.0%
TAAAACAAGCATAGCAAAGA+TGG + chr5.1:7898772-7898791 MS.gene20304:intron 30.0%
TAAATGTTCTAGCAGGTTAT+AGG + chr5.1:7897436-7897455 MS.gene20304:intron 30.0%
TCAGAAAACAATATACCTTG+TGG - chr5.1:7898110-7898129 None:intergenic 30.0%
TGGATTATATTGAACTATGG+CGG - chr5.1:7897778-7897797 None:intergenic 30.0%
TTGTTGACAGTAACTTTATG+AGG - chr5.1:7899524-7899543 None:intergenic 30.0%
! CATTTAAAACTTTGGTATGC+TGG - chr5.1:7898038-7898057 None:intergenic 30.0%
! TGATGATTCTTTTCTAAGCA+TGG + chr5.1:7898154-7898173 MS.gene20304:intron 30.0%
!! ACTAGTTCTAACATGTAACT+CGG + chr5.1:7899207-7899226 MS.gene20304:intron 30.0%
!! GGTGGTTATTTTCATTTTTC+GGG - chr5.1:7897743-7897762 None:intergenic 30.0%
!! GTGGTTATTTTCATTTTTCG+GGG - chr5.1:7897742-7897761 None:intergenic 30.0%
!! GTTGAGCTTTTAAAAATGAG+GGG + chr5.1:7900128-7900147 MS.gene20304:CDS 30.0%
!! TGGTTATTTTCATTTTTCGG+GGG - chr5.1:7897741-7897760 None:intergenic 30.0%
!! TTGAGATTTTGAAAGGATGT+TGG - chr5.1:7900102-7900121 None:intergenic 30.0%
!!! ATATTTTGGTACCAGAAGAA+TGG - chr5.1:7899239-7899258 None:intergenic 30.0%
!!! TGGCAATGTTTTTTCAATGA+TGG + chr5.1:7898330-7898349 MS.gene20304:intron 30.0%
AAACAAGCATAGCAAAGATG+GGG + chr5.1:7898774-7898793 MS.gene20304:intron 35.0%
AAACTTGGTTTCTTGGAACT+TGG + chr5.1:7899604-7899623 MS.gene20304:intron 35.0%
AAAGCTGGAGTAGTCAAATA+CGG + chr5.1:7897321-7897340 MS.gene20304:CDS 35.0%
AACAAAACTGAAGCATATGG+TGG + chr5.1:7899539-7899558 MS.gene20304:CDS 35.0%
AATTTGCAACGTCAATCATG+TGG + chr5.1:7898310-7898329 MS.gene20304:intron 35.0%
ACAACATTAGAGAGAGAGTT+GGG + chr5.1:7898846-7898865 MS.gene20304:intron 35.0%
ACAATATCCCCTTAAGATTG+TGG + chr5.1:7898285-7898304 MS.gene20304:intron 35.0%
ACACGAGAATAACTGAATGT+TGG + chr5.1:7898726-7898745 MS.gene20304:intron 35.0%
ACATTCAGTTATTCTCGTGT+TGG - chr5.1:7898726-7898745 None:intergenic 35.0%
ACCTACAGTAGAAATGATAG+TGG + chr5.1:7898874-7898893 MS.gene20304:intron 35.0%
ACTAAATGGTCTGTGATTCT+TGG + chr5.1:7897908-7897927 MS.gene20304:intron 35.0%
AGTAACTTTATGAGGTTTGG+TGG - chr5.1:7899516-7899535 None:intergenic 35.0%
CACGAGAATAACTGAATGTT+GGG + chr5.1:7898727-7898746 MS.gene20304:intron 35.0%
CATTTGACCTATGAAGGAAT+TGG - chr5.1:7898618-7898637 None:intergenic 35.0%
CTCTCCTTATACAGAATCTA+CGG - chr5.1:7898938-7898957 None:intergenic 35.0%
GACAGGTAAATCATAAGTAC+AGG + chr5.1:7899973-7899992 MS.gene20304:intron 35.0%
GACAGTAACTTTATGAGGTT+TGG - chr5.1:7899519-7899538 None:intergenic 35.0%
GCAAATTCACCACAATCTTA+AGG - chr5.1:7898297-7898316 None:intergenic 35.0%
GTCAACAAAACTGAAGCATA+TGG + chr5.1:7899536-7899555 MS.gene20304:CDS 35.0%
GTTACTGAAACTTGGTTTCT+TGG + chr5.1:7899597-7899616 MS.gene20304:intron 35.0%
TAAGCTATGAACAGGACAAA+TGG + chr5.1:7897643-7897662 MS.gene20304:intron 35.0%
TACCATTAATGAGGCAATCA+AGG - chr5.1:7898477-7898496 None:intergenic 35.0%
TACCTCAATAGGATCAATAC+CGG + chr5.1:7899487-7899506 MS.gene20304:intron 35.0%
TACCTCTATATAAGCAGCAA+TGG - chr5.1:7898448-7898467 None:intergenic 35.0%
TACCTTGATTGCCTCATTAA+TGG + chr5.1:7898472-7898491 MS.gene20304:intron 35.0%
TACTCTTCGTTACTGAAACT+TGG + chr5.1:7899589-7899608 MS.gene20304:intron 35.0%
TAGTGGGAGTGAAATTCTAT+TGG + chr5.1:7899843-7899862 MS.gene20304:intron 35.0%
TATAAGGAGAGTAGATCAGA+TGG + chr5.1:7898947-7898966 MS.gene20304:intron 35.0%
TCCACTATCATTTCTACTGT+AGG - chr5.1:7898878-7898897 None:intergenic 35.0%
TCTCCTTATACAGAATCTAC+GGG - chr5.1:7898937-7898956 None:intergenic 35.0%
TGACAATCGAGTCGAATATA+AGG - chr5.1:7898392-7898411 None:intergenic 35.0%
TGTTATGGTTACACTGTTAC+TGG + chr5.1:7899708-7899727 MS.gene20304:intron 35.0%
! AATGGTCTGTCATTTGAGAT+AGG - chr5.1:7898591-7898610 None:intergenic 35.0%
! ATGTGCTTTAAGCTATGAAC+AGG + chr5.1:7897635-7897654 MS.gene20304:intron 35.0%
! GCTATAATTTGTGTACCACA+AGG + chr5.1:7898092-7898111 MS.gene20304:intron 35.0%
! TCATTTGAGATAGGATAGTG+TGG - chr5.1:7898582-7898601 None:intergenic 35.0%
! TCTTTTCCTGCAAACTTTTC+TGG + chr5.1:7899643-7899662 MS.gene20304:intron 35.0%
!! CAGGAAAAGATACTGCTTTT+TGG - chr5.1:7899633-7899652 None:intergenic 35.0%
!! CTAGTTCTAACATGTAACTC+GGG + chr5.1:7899208-7899227 MS.gene20304:intron 35.0%
!! GTAGAAATGATAGTGGAAAC+AGG + chr5.1:7898881-7898900 MS.gene20304:intron 35.0%
!! TAGTTCTAACATGTAACTCG+GGG + chr5.1:7899209-7899228 MS.gene20304:intron 35.0%
!! TCTGCTTTTGGAGAATCTTT+TGG - chr5.1:7900068-7900087 None:intergenic 35.0%
!!! TTATTTTCATTTTTCGGGGG+TGG - chr5.1:7897738-7897757 None:intergenic 35.0%
AAGCTGGAGTAGTCAAATAC+GGG + chr5.1:7897322-7897341 MS.gene20304:CDS 40.0%
AATGGTCTGTGATTCTTGGT+TGG + chr5.1:7897912-7897931 MS.gene20304:intron 40.0%
ACACGCACAAACTCACATAT+AGG + chr5.1:7898203-7898222 MS.gene20304:intron 40.0%
AGACCCGTAGATTCTGTATA+AGG + chr5.1:7898931-7898950 MS.gene20304:intron 40.0%
AGCCTTTCTTAAACACAGGA+AGG - chr5.1:7899353-7899372 None:intergenic 40.0%
AGTCTGACATACCTAATGAC+AGG + chr5.1:7899956-7899975 MS.gene20304:intron 40.0%
ATATGGGCATTCTCTGTAGT+GGG + chr5.1:7899827-7899846 MS.gene20304:intron 40.0%
ATTCCACCAGAAACTGAAAG+AGG - chr5.1:7897819-7897838 None:intergenic 40.0%
ATTTGAACGCATGCGCAAAA+TGG - chr5.1:7897391-7897410 None:intergenic 40.0%
CAACATTAGAGAGAGAGTTG+GGG + chr5.1:7898847-7898866 MS.gene20304:intron 40.0%
CTCTATATAAGCAGCAATGG+CGG - chr5.1:7898445-7898464 None:intergenic 40.0%
GAAATCTGGGTCTGTAAGAA+TGG - chr5.1:7897364-7897383 None:intergenic 40.0%
GACAACATTAGAGAGAGAGT+TGG + chr5.1:7898845-7898864 MS.gene20304:intron 40.0%
GAGAATAACTGAATGTTGGG+CGG + chr5.1:7898730-7898749 MS.gene20304:intron 40.0%
GCGTTCAAATGTAGATCTCA+AGG + chr5.1:7897401-7897420 MS.gene20304:CDS 40.0%
GCTAAGCCTTTCTTAAACAC+AGG - chr5.1:7899357-7899376 None:intergenic 40.0%
GTCATTAGGTATGTCAGACT+AGG - chr5.1:7899956-7899975 None:intergenic 40.0%
GTGGTAAGACTAGACAAGAT+AGG + chr5.1:7898813-7898832 MS.gene20304:intron 40.0%
GTTGGAAATGTTTCTCTCCT+AGG + chr5.1:7899142-7899161 MS.gene20304:intron 40.0%
TAGTCGAACTACGCACATAT+GGG + chr5.1:7899811-7899830 MS.gene20304:intron 40.0%
TGCCTTCCTGTGTTTAAGAA+AGG + chr5.1:7899348-7899367 MS.gene20304:intron 40.0%
TTGTAAACTTGATCGCAAGC+AGG - chr5.1:7898656-7898675 None:intergenic 40.0%
! GCAAAATGGTGCTGAAATCT+GGG - chr5.1:7897377-7897396 None:intergenic 40.0%
! GCATCAGTTTTCTCTGCTTT+TGG - chr5.1:7900080-7900099 None:intergenic 40.0%
! TAAGGCTTGATGGTTGTTGT+TGG + chr5.1:7899124-7899143 MS.gene20304:intron 40.0%
!! TCGTGTTGGTTCTTATACAG+AGG - chr5.1:7898712-7898731 None:intergenic 40.0%
!!! GGAAGAGCATCTTCTTTTCT+CGG - chr5.1:7900024-7900043 None:intergenic 40.0%
AAGGAGAGTAGATCAGATGG+AGG + chr5.1:7898950-7898969 MS.gene20304:intron 45.0%
AGCTGGAGTAGTCAAATACG+GGG + chr5.1:7897323-7897342 MS.gene20304:CDS 45.0%
ATATTGAACTATGGCGGTCG+AGG - chr5.1:7897772-7897791 None:intergenic 45.0%
ATGCTCTTCCTTGTTACTCC+TGG + chr5.1:7900034-7900053 MS.gene20304:CDS 45.0%
CATATGGGCATTCTCTGTAG+TGG + chr5.1:7899826-7899845 MS.gene20304:intron 45.0%
CCAGAAACTGAAAGAGGCTT+AGG - chr5.1:7897813-7897832 None:intergenic 45.0%
CCTAAGCCTCTTTCAGTTTC+TGG + chr5.1:7897810-7897829 MS.gene20304:CDS 45.0%
CTTAGTGGGATAAGGCTTGA+TGG + chr5.1:7899114-7899133 MS.gene20304:intron 45.0%
CTTCCTTGTTACTCCTGGAA+GGG + chr5.1:7900039-7900058 MS.gene20304:CDS 45.0%
GAGGATAGTCAGATCACTAG+AGG + chr5.1:7898969-7898988 MS.gene20304:intron 45.0%
GCTATGAACAGGACAAATGG+AGG + chr5.1:7897646-7897665 MS.gene20304:intron 45.0%
GTAACTGATCTCACTGAGTG+AGG - chr5.1:7898544-7898563 None:intergenic 45.0%
GTAGTCGAACTACGCACATA+TGG + chr5.1:7899810-7899829 MS.gene20304:intron 45.0%
GTTTGCAAAAGCAGCAACGA+AGG + chr5.1:7900280-7900299 MS.gene20304:CDS 45.0%
TCAAATACGGGGCTGGAAAA+TGG + chr5.1:7897334-7897353 MS.gene20304:CDS 45.0%
TCTGCAGTCCATTTCTGCTT+AGG - chr5.1:7897285-7897304 None:intergenic 45.0%
TCTTCCTTGTTACTCCTGGA+AGG + chr5.1:7900038-7900057 MS.gene20304:CDS 45.0%
! AAGCCTCTTTCAGTTTCTGG+TGG + chr5.1:7897813-7897832 MS.gene20304:CDS 45.0%
! AAGCCTTATCCCACTAAGTG+GGG - chr5.1:7899112-7899131 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG - chr5.1:7899113-7899132 None:intergenic 45.0%
! CGCAAAATGGTGCTGAAATC+TGG - chr5.1:7897378-7897397 None:intergenic 45.0%
! CGCCATTGCTGCTTATATAG+AGG + chr5.1:7898443-7898462 MS.gene20304:CDS 45.0%
! GAGCTTAGGGGAACTTGTTT+AGG - chr5.1:7899298-7899317 None:intergenic 45.0%
! GGTTTGAGATGCTACTGCTA+CGG + chr5.1:7897491-7897510 MS.gene20304:intron 45.0%
! GTTAAGAGCTTGTTCTTGCC+AGG - chr5.1:7899324-7899343 None:intergenic 45.0%
! TCAAGCCTTATCCCACTAAG+TGG - chr5.1:7899114-7899133 None:intergenic 45.0%
!! CGACTCGATTGTCAAGTTGA+AGG + chr5.1:7898398-7898417 MS.gene20304:CDS 45.0%
!! CTGCAAACTTTTCTGGCGAA+GGG + chr5.1:7899650-7899669 MS.gene20304:intron 45.0%
!! GAAATGGACTGCAGAAGAAG+AGG + chr5.1:7897290-7897309 MS.gene20304:CDS 45.0%
!! GACCGGTATTGATCCTATTG+AGG - chr5.1:7899492-7899511 None:intergenic 45.0%
!! GTCAAGTTGAAGGAGCCAAA+GGG + chr5.1:7898408-7898427 MS.gene20304:CDS 45.0%
!! TGTCAAGTTGAAGGAGCCAA+AGG + chr5.1:7898407-7898426 MS.gene20304:CDS 45.0%
!! TTATGAGGTTTGGTGGAGAC+CGG - chr5.1:7899509-7899528 None:intergenic 45.0%
!!! TTTCATTTTTCGGGGGTGGT+AGG - chr5.1:7897734-7897753 None:intergenic 45.0%
AACAGCTGAAGCTGAAGCAG+AGG + chr5.1:7900247-7900266 MS.gene20304:CDS 50.0%
AATATGGGGATCCAGGCAGA+AGG + chr5.1:7897686-7897705 MS.gene20304:CDS 50.0%
ACTAAGTGGGGTCTGCTACA+TGG - chr5.1:7899100-7899119 None:intergenic 50.0%
AGACCCCACTTAGTGGGATA+AGG + chr5.1:7899106-7899125 MS.gene20304:intron 50.0%
AGCAGCTGCAAAAGCAGTTG+CGG + chr5.1:7900175-7900194 MS.gene20304:CDS 50.0%
AGTCAGATCACTAGAGGCAG+AGG + chr5.1:7898975-7898994 MS.gene20304:intron 50.0%
ATGTAGCAGACCCCACTTAG+TGG + chr5.1:7899099-7899118 MS.gene20304:intron 50.0%
CAAAGATGGGGATGTTGCGT+TGG + chr5.1:7898786-7898805 MS.gene20304:intron 50.0%
CCTTCGCCAGAAAAGTTTGC+AGG - chr5.1:7899652-7899671 None:intergenic 50.0%
CTGAAGCATATGGTGGCAAG+CGG + chr5.1:7899546-7899565 MS.gene20304:CDS 50.0%
GGCAAGCGGCAAATTAGTGA+AGG + chr5.1:7899560-7899579 MS.gene20304:CDS 50.0%
TCTTGCCAGGTGAGAGCTTA+GGG - chr5.1:7899311-7899330 None:intergenic 50.0%
TGACTGCAATATGGGGATCC+AGG + chr5.1:7897679-7897698 MS.gene20304:CDS 50.0%
TGGGTGCTCCTAAGCAGAAA+TGG + chr5.1:7897274-7897293 MS.gene20304:CDS 50.0%
TGTAGCAGACCCCACTTAGT+GGG + chr5.1:7899100-7899119 MS.gene20304:intron 50.0%
TTCTTGCCAGGTGAGAGCTT+AGG - chr5.1:7899312-7899331 None:intergenic 50.0%
! AATCTTTTGGCCTCCCTTCC+AGG - chr5.1:7900055-7900074 None:intergenic 50.0%
! TGCAAGTTTTGCCTTCTGCC+TGG - chr5.1:7897700-7897719 None:intergenic 50.0%
!! ATGATAGTGGAAACAGGCGC+AGG + chr5.1:7898887-7898906 MS.gene20304:intron 50.0%
!! CCTGCAAACTTTTCTGGCGA+AGG + chr5.1:7899649-7899668 MS.gene20304:intron 50.0%
AGCTGCAAAAGCAGTTGCGG+AGG + chr5.1:7900178-7900197 MS.gene20304:CDS 55.0%
AGTTCCCCTAAGCTCTCACC+TGG + chr5.1:7899303-7899322 MS.gene20304:intron 55.0%
CCTCCCTTCCAGGAGTAACA+AGG - chr5.1:7900045-7900064 None:intergenic 55.0%
CCTTGTTACTCCTGGAAGGG+AGG + chr5.1:7900042-7900061 MS.gene20304:CDS 55.0%
CTCGGGGACTTCCATTCTTC+TGG + chr5.1:7899225-7899244 MS.gene20304:intron 55.0%
CTTGCCAGGTGAGAGCTTAG+GGG - chr5.1:7899310-7899329 None:intergenic 55.0%
GAACTATGGCGGTCGAGGTT+GGG - chr5.1:7897767-7897786 None:intergenic 55.0%
GCGGCAATGTCAGAACCCTT+TGG - chr5.1:7898426-7898445 None:intergenic 55.0%
GGAGTAGTCAAATACGGGGC+TGG + chr5.1:7897327-7897346 MS.gene20304:CDS 55.0%
GGCTTAGGAGCTGCAACTTC+TGG - chr5.1:7897798-7897817 None:intergenic 55.0%
GGGATGTTGCGTTGGATGTG+TGG + chr5.1:7898794-7898813 MS.gene20304:intron 55.0%
TGAACTATGGCGGTCGAGGT+TGG - chr5.1:7897768-7897787 None:intergenic 55.0%
TGAGGCTGAGACAGCAGCAA+GGG + chr5.1:7900217-7900236 MS.gene20304:CDS 55.0%
TGCTGTCTCAGCCTCAGCAA+TGG - chr5.1:7900213-7900232 None:intergenic 55.0%
! ATAGTGGAAACAGGCGCAGG+TGG + chr5.1:7898890-7898909 MS.gene20304:intron 55.0%
!! GAAGAGGCAGCTCTGAAAGC+TGG + chr5.1:7897306-7897325 MS.gene20304:CDS 55.0%
CTGAGGCTGAGACAGCAGCA+AGG + chr5.1:7900216-7900235 MS.gene20304:CDS 60.0%
GGCAGAAGCTGCCATTGCTG+AGG + chr5.1:7900199-7900218 MS.gene20304:CDS 60.0%
! GAGGGGTGTGACAGCTCAAG+AGG + chr5.1:7900145-7900164 MS.gene20304:CDS 60.0%
CTATGGCGGTCGAGGTTGGG+TGG - chr5.1:7897764-7897783 None:intergenic 65.0%
GGCTGAGACAGCAGCAAGGG+AGG + chr5.1:7900220-7900239 MS.gene20304:CDS 65.0%
TGGCGGTCGAGGTTGGGTGG+TGG - chr5.1:7897761-7897780 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr5.1 gene 7897273 7900410 7897273 ID=MS.gene20304
chr5.1 mRNA 7897273 7900410 7897273 ID=MS.gene20304.t1;Parent=MS.gene20304
chr5.1 exon 7897273 7897422 7897273 ID=MS.gene20304.t1.exon1;Parent=MS.gene20304.t1
chr5.1 CDS 7897273 7897422 7897273 ID=cds.MS.gene20304.t1;Parent=MS.gene20304.t1
chr5.1 exon 7897657 7897865 7897657 ID=MS.gene20304.t1.exon2;Parent=MS.gene20304.t1
chr5.1 CDS 7897657 7897865 7897657 ID=cds.MS.gene20304.t1;Parent=MS.gene20304.t1
chr5.1 exon 7898380 7898464 7898380 ID=MS.gene20304.t1.exon3;Parent=MS.gene20304.t1
chr5.1 CDS 7898380 7898464 7898380 ID=cds.MS.gene20304.t1;Parent=MS.gene20304.t1
chr5.1 exon 7899498 7899581 7899498 ID=MS.gene20304.t1.exon4;Parent=MS.gene20304.t1
chr5.1 CDS 7899498 7899581 7899498 ID=cds.MS.gene20304.t1;Parent=MS.gene20304.t1
chr5.1 exon 7899978 7900330 7899978 ID=MS.gene20304.t1.exon5;Parent=MS.gene20304.t1
chr5.1 CDS 7899978 7900330 7899978 ID=cds.MS.gene20304.t1;Parent=MS.gene20304.t1
chr5.1 exon 7900401 7900410 7900401 ID=MS.gene20304.t1.exon6;Parent=MS.gene20304.t1
chr5.1 CDS 7900401 7900410 7900401 ID=cds.MS.gene20304.t1;Parent=MS.gene20304.t1
Gene Sequence

>MS.gene20304

ATGGGTGCTCCTAAGCAGAAATGGACTGCAGAAGAAGAGGCAGCTCTGAAAGCTGGAGTAGTCAAATACGGGGCTGGAAAATGGCGTACCATTCTTACAGACCCAGATTTCAGCACCATTTTGCGCATGCGTTCAAATGTAGATCTCAAGGTAATATTTGTTTTAAATGTTCTAGCAGGTTATAGGTATTGTTTTAAAGTAAAATTATTGTTATGTTAGGTTTGAGATGCTACTGCTACGGCACATGTTGAATGATTAACTGTTTACTTTATCACAAGGATTAAGAAATATATGCAGATTTCTTTGCGTTGAAAATTCTGTCATATTAAACTATATACCTAGGTGTGTTACTATATAACTATATGTGCTTTAAGCTATGAACAGGACAAATGGAGGAACATAAATGTGACTGCAATATGGGGATCCAGGCAGAAGGCAAAACTTGCACTTAAAAAGAACCTACCACCCCCGAAAAATGAAAATAACCACCACCCAACCTCGACCGCCATAGTTCAATATAATCCAGAAGTTGCAGCTCCTAAGCCTCTTTCAGTTTCTGGTGGAATATCTACTTCCAAAGAACAAATATCAAGGTTATAGCACTTCATGCGAAATATTTTTTTACACTTTATAGAACTAAATGGTCTGTGATTCTTGGTTGGTATAAACTTGTTCTTGAATAGCAAATGAACAAACATCATATAATCAATAGATATTACTTCTATAATAGTTATCAGCTCTAAGGTTGCTTAATGCAGTGTGCCAGCATACCAAAGTTTTAAATGATTTAATGAATTAAACAAGTTGCAAACAATTTTGGCTATAATTTGTGTACCACAAGGTATATTGTTTTCTGATTCTTCATTAGCTATATAATTTCATGATGATTCTTTTCTAAGCATGGCAAACATACACTCAAATTATTCAAATACACGCACAAACTCACATATAGGTTCCAATTACAACTACAAAATGTTTGATAAATAGTTGTCTTCTGTTGTCGCTTTTGATGACAATATCCCCTTAAGATTGTGGTGAATTTGCAACGTCAATCATGTGGCAATGTTTTTTCAATGATGGCAGCAGAATTCTTTTTAATAATGACAGATTGGACAGCCTTATATTCGACTCGATTGTCAAGTTGAAGGAGCCAAAGGGTTCTGACATTGCCGCCATTGCTGCTTATATAGAGGTATTTCTACCTTGATTGCCTCATTAATGGTATATATAATCTAAATGTCAAACAAATAGAGCAACCAAATTTTTTTCCTCACTCAGTGAGATCAGTTACATGCATCATCAGACACCACACTATCCTATCTCAAATGACAGACCATTTATTCCAATTCCTTCATAGGTCAAATGAAAAATATCGGTCAGCCTGCTTGCGATCAAGTTTACAATAATAAAAGTATTTTAAACTCTTTGGAATTGTTCCTCTGTATAAGAACCAACACGAGAATAACTGAATGTTGGGCGGTTATGAATGAACACGAGAATAAAACAAGCATAGCAAAGATGGGGATGTTGCGTTGGATGTGTGGTAAGACTAGACAAGATAGGATTAGAAATGACAACATTAGAGAGAGAGTTGGGGTAGCACCTACAGTAGAAATGATAGTGGAAACAGGCGCAGGTGGTTTGAGCATGTAGAGAGAAGACCCGTAGATTCTGTATAAGGAGAGTAGATCAGATGGAGGATAGTCAGATCACTAGAGGCAGAGGAAGACCTAGAAAAACTATATGAGAAACTATTATGAAAAACTTAGATATTAATGAGGATCCAAATAAGGTTTATGATAGAACATTATGATATAATTTGATCCATGTAGCAGACCCCACTTAGTGGGATAAGGCTTGATGGTTGTTGTTGGAAATGTTTCTCTCCTAGGTCCATTGATTTATATGTTGTTTATTAACTCTCCACAATTTCAACTAGTTCTAACATGTAACTCGGGGACTTCCATTCTTCTGGTACCAAAATATTAGAGCATTTTTTTCATTTGATGGTTCTTTAACTCACCTAAACAAGTTCCCCTAAGCTCTCACCTGGCAAGAACAAGCTCTTAACTTTTTGCCTTCCTGTGTTTAAGAAAGGCTTAGCATAAGTCAATCAGTCATAATATGCATCTATTTGTTTGTGTCATTTTAAATATACTAGCAATTGACATTTTATTTTTTTTACTTCTCTGTATCATTGAGTCTGAAATTGTTTACCTCAATAGGATCAATACCGGTCTCCACCAAACCTCATAAAGTTACTGTCAACAAAACTGAAGCATATGGTGGCAAGCGGCAAATTAGTGAAGGTAAATATACTCTTCGTTACTGAAACTTGGTTTCTTGGAACTTGGTTTCCAAAAAGCAGTATCTTTTCCTGCAAACTTTTCTGGCGAAGGGAATACTGTCCACTGAATAATTTATTGGATATTGAATGTTATGGTTACACTGTTACTGGAAGTTATTAGCAGAAAATGATTGGTAAAGAGAAATTAATTGGTTGTATGTAAAGATGTGAATACAAAAAATCTGTTATGGTAGTCGAACTACGCACATATGGGCATTCTCTGTAGTGGGAGTGAAATTCTATTGGTTAACAAAGTTTTCCTTTTAATAAACCTATATTACTGTAAGATAAATATTGGACAAGTAATTTAATATGATACTTGGTCAATTGATTCCTAGTCTGACATACCTAATGACAGGTAAATCATAAGTACAGGATTGCAACAAATTCAACAAAAACATCCGAGAAAAGAAGATGCTCTTCCTTGTTACTCCTGGAAGGGAGGCCAAAAGATTCTCCAAAAGCAGAGAAAACTGATGCCAACATCCTTTCAAAATCTCAAATTGATGTTGAGCTTTTAAAAATGAGGGGTGTGACAGCTCAAGAGGTAGCAGCAGCAGCTGCAAAAGCAGTTGCGGAGGCAGAAGCTGCCATTGCTGAGGCTGAGACAGCAGCAAGGGAGGCTGAAACAGCTGAAGCTGAAGCAGAGGCTGCACGTGTGTTTGCAAAAGCAGCAACGAAGGCACTAAAATGCAGAAGACTTAATATTTGGTAAGCTTCCTTACCAAGAAACATTACTTAATGCATATAAATAACTGTGATGTTTATTGCTTCCTTTTAGCCCATTTTGA

Protein sequence

>MS.gene20304.t1

MGAPKQKWTAEEEAALKAGVVKYGAGKWRTILTDPDFSTILRMRSNVDLKDKWRNINVTAIWGSRQKAKLALKKNLPPPKNENNHHPTSTAIVQYNPEVAAPKPLSVSGGISTSKEQISRLDSLIFDSIVKLKEPKGSDIAAIAAYIEDQYRSPPNLIKLLSTKLKHMVASGKLVKVNHKYRIATNSTKTSEKRRCSSLLLLEGRPKDSPKAEKTDANILSKSQIDVELLKMRGVTAQEVAAAAAKAVAEAEAAIAEAETAAREAETAEAEAEAARVFAKAATKALKCRRLNICPF