AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene20429

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene20429.t1 MTR_6g012450 94.726 493 26 0 2 494 3 495 0.0 949
MS.gene20429.t1 MTR_7g010950 55.599 509 187 9 1 494 2 486 4.79e-176 504
MS.gene20429.t1 MTR_4g082060 43.849 504 227 17 2 492 3 463 3.99e-116 350
MS.gene20429.t1 MTR_3g435480 42.004 519 221 20 1 494 2 465 3.40e-97 301
MS.gene20429.t1 MTR_7g086780 36.585 492 215 20 4 474 6 421 3.45e-66 219
MS.gene20429.t1 MTR_8g044220 33.267 502 253 18 2 493 9 438 4.02e-64 214
MS.gene20429.t1 MTR_5g041530 36.342 421 146 12 73 492 80 379 1.61e-63 211
MS.gene20429.t1 MTR_5g041380 35.990 414 136 16 85 492 79 369 2.49e-56 192
MS.gene20429.t1 MTR_5g041400 36.124 418 130 17 85 492 71 361 7.60e-56 191
MS.gene20429.t1 MTR_6g027460 39.683 252 116 8 92 327 51 282 1.37e-44 160
MS.gene20429.t1 MTR_6g027450 41.393 244 110 9 95 329 47 266 2.63e-42 153
MS.gene20429.t1 MTR_5g041420 43.137 204 102 5 8 199 7 208 8.89e-41 149
MS.gene20429.t1 MTR_2g016030 81.538 65 11 1 125 188 36 100 1.17e-33 125
MS.gene20429.t1 MTR_3g091820 53.846 91 35 1 107 190 8 98 6.41e-26 107
MS.gene20429.t1 MTR_8g479350 75.926 54 13 0 135 188 68 121 4.03e-25 106
MS.gene20429.t1 MTR_8g079060 44.915 118 53 3 135 243 29 143 4.48e-25 103
MS.gene20429.t1 MTR_2g096740 50.549 91 44 1 99 188 25 115 4.90e-25 105
MS.gene20429.t1 MTR_2g096740 50.549 91 44 1 99 188 40 130 5.27e-25 105
MS.gene20429.t1 MTR_8g027295 50.538 93 36 1 130 212 19 111 6.49e-25 104
MS.gene20429.t1 MTR_4g022370 68.966 58 18 0 131 188 78 135 7.84e-25 105
MS.gene20429.t1 MTR_4g063780 51.087 92 43 1 128 217 68 159 2.40e-24 103
MS.gene20429.t1 MTR_2g093220 69.492 59 18 0 130 188 35 93 2.41e-24 103
MS.gene20429.t1 MTR_2g059540 77.551 49 11 0 135 183 31 79 3.07e-24 100
MS.gene20429.t1 MTR_8g015840 75.000 52 13 0 135 186 20 71 3.38e-24 100
MS.gene20429.t1 MTR_4g109980 69.811 53 16 0 133 185 38 90 9.97e-24 102
MS.gene20429.t1 MTR_1g077600 62.712 59 22 0 129 187 37 95 2.12e-23 100
MS.gene20429.t1 MTR_1g077600 62.712 59 22 0 129 187 37 95 2.46e-23 100
MS.gene20429.t1 MTR_7g024670 76.471 51 12 0 137 187 79 129 3.00e-23 101
MS.gene20429.t1 MTR_4g088580 75.000 52 13 0 137 188 57 108 4.69e-23 101
MS.gene20429.t1 MTR_3g090430 58.108 74 20 1 137 210 53 115 5.42e-23 100
MS.gene20429.t1 MTR_8g068210 47.368 95 45 2 123 217 20 109 6.27e-23 100
MS.gene20429.t1 MTR_5g031440 67.273 55 18 0 131 185 39 93 7.73e-23 99.8
MS.gene20429.t1 MTR_7g059400 71.154 52 15 0 137 188 78 129 1.76e-22 99.0
MS.gene20429.t1 MTR_2g014170 55.844 77 31 1 107 183 20 93 1.95e-22 98.2
MS.gene20429.t1 MTR_3g077750 45.455 110 53 1 97 206 30 132 2.27e-22 98.6
MS.gene20429.t1 MTR_1g056810 54.321 81 34 2 130 207 6 86 2.36e-22 97.4
MS.gene20429.t1 MTR_4g461080 65.625 64 21 1 125 187 18 81 2.67e-22 97.1
MS.gene20429.t1 MTR_4g089095 66.667 54 18 0 135 188 50 103 4.45e-22 96.7
MS.gene20429.t1 MTR_4g089095 66.667 54 18 0 135 188 16 69 6.30e-22 95.5
MS.gene20429.t1 MTR_2g013370 73.077 52 13 1 137 188 48 98 1.20e-21 95.1
MS.gene20429.t1 MTR_2g014060 70.000 50 15 0 137 186 27 76 2.53e-21 95.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene20429.t1 AT5G39660 41.887 530 193 24 5 494 3 457 1.50e-103 317
MS.gene20429.t1 AT5G39660 41.887 530 193 24 5 494 3 457 1.50e-103 317
MS.gene20429.t1 AT5G39660 41.887 530 193 24 5 494 3 457 1.50e-103 317
MS.gene20429.t1 AT3G47500 38.976 508 230 19 1 492 3 446 2.40e-81 260
MS.gene20429.t1 AT5G62430 37.150 393 120 17 105 492 26 296 2.46e-54 184
MS.gene20429.t1 AT1G69570 34.409 372 138 14 128 493 125 396 1.24e-45 164
MS.gene20429.t1 AT1G26790 57.463 134 48 3 80 209 59 187 9.33e-38 142
MS.gene20429.t1 AT1G29160 86.667 60 8 0 129 188 56 115 3.93e-35 129
MS.gene20429.t1 AT2G34140 83.333 60 10 0 129 188 52 111 1.87e-33 125
MS.gene20429.t1 AT5G60850 61.429 70 27 0 123 192 39 108 4.20e-26 108
MS.gene20429.t1 AT1G51700 72.881 59 15 1 135 192 33 91 1.94e-25 103
MS.gene20429.t1 AT3G55370 60.870 69 27 0 131 199 72 140 3.60e-25 107
MS.gene20429.t1 AT3G55370 60.870 69 27 0 131 199 72 140 3.64e-25 106
MS.gene20429.t1 AT5G60200 53.763 93 41 2 131 221 51 143 5.01e-25 104
MS.gene20429.t1 AT3G55370 60.870 69 27 0 131 199 117 185 6.04e-25 106
MS.gene20429.t1 AT3G21270 77.358 53 12 0 135 187 29 81 1.21e-24 101
MS.gene20429.t1 AT1G07640 61.111 72 25 1 116 187 5 73 1.49e-24 103
MS.gene20429.t1 AT2G28810 65.574 61 21 0 126 186 68 128 1.51e-24 104
MS.gene20429.t1 AT3G45610 56.944 72 30 1 131 201 36 107 1.61e-24 102
MS.gene20429.t1 AT3G61850 63.492 63 23 0 130 192 57 119 2.35e-24 103
MS.gene20429.t1 AT3G61850 63.492 63 23 0 130 192 57 119 2.35e-24 103
MS.gene20429.t1 AT2G28810 65.574 61 21 0 126 186 85 145 2.37e-24 104
MS.gene20429.t1 AT3G61850 63.492 63 23 0 130 192 69 131 2.44e-24 103
MS.gene20429.t1 AT3G50410 73.585 53 14 0 135 187 30 82 3.02e-24 102
MS.gene20429.t1 AT1G07640 75.472 53 13 0 135 187 77 129 3.40e-24 103
MS.gene20429.t1 AT3G61850 63.492 63 23 0 130 192 57 119 3.42e-24 103
MS.gene20429.t1 AT3G61850 63.492 63 23 0 130 192 69 131 3.98e-24 103
MS.gene20429.t1 AT5G65590 73.214 56 15 0 135 190 41 96 4.03e-24 103
MS.gene20429.t1 AT1G07640 75.472 53 13 0 135 187 85 137 4.23e-24 103
MS.gene20429.t1 AT2G37590 67.241 58 19 0 131 188 85 142 4.42e-24 103
MS.gene20429.t1 AT4G38000 52.874 87 39 2 134 219 40 125 4.77e-24 101
MS.gene20429.t1 AT4G24060 68.421 57 18 0 132 188 50 106 7.02e-24 102
MS.gene20429.t1 AT1G64620 71.154 52 15 0 132 183 46 97 3.95e-23 100
MS.gene20429.t1 AT1G28310 72.222 54 15 0 135 188 27 80 4.63e-23 100
MS.gene20429.t1 AT5G02460 67.241 58 19 0 131 188 91 148 6.26e-23 101
MS.gene20429.t1 AT1G28310 72.222 54 15 0 135 188 51 104 7.11e-23 99.8
MS.gene20429.t1 AT2G28510 69.643 56 17 0 137 192 50 105 7.15e-23 99.0
MS.gene20429.t1 AT5G66940 67.925 53 17 0 135 187 32 84 2.14e-22 95.9
MS.gene20429.t1 AT4G00940 66.102 59 20 0 130 188 63 121 2.88e-22 97.4
MS.gene20429.t1 AT4G00940 66.102 59 20 0 130 188 63 121 2.88e-22 97.4
MS.gene20429.t1 AT4G00940 66.102 59 20 0 130 188 63 121 2.88e-22 97.4
MS.gene20429.t1 AT1G47655 73.469 49 13 0 135 183 29 77 3.63e-22 95.1
MS.gene20429.t1 AT2G46590 67.925 53 17 0 130 182 63 115 6.79e-22 97.4
MS.gene20429.t1 AT2G46590 67.925 53 17 0 130 182 75 127 7.30e-22 97.4
MS.gene20429.t1 AT3G52440 69.231 52 16 0 137 188 27 78 7.83e-22 95.1
MS.gene20429.t1 AT3G52440 69.231 52 16 0 137 188 46 97 1.01e-21 95.1
MS.gene20429.t1 AT1G21340 66.667 54 18 0 137 190 40 93 1.25e-21 94.7
MS.gene20429.t1 AT4G21050 57.353 68 29 0 121 188 10 77 4.67e-21 91.7
MS.gene20429.t1 AT5G62940 69.388 49 15 0 137 185 75 123 7.76e-20 91.7
MS.gene20429.t1 AT4G21040 49.412 85 36 2 137 221 27 104 9.17e-19 85.9
MS.gene20429.t1 AT4G21080 53.333 75 31 2 137 208 27 100 5.75e-18 84.0
MS.gene20429.t1 AT4G21030 44.000 75 39 2 137 208 23 97 7.27e-11 62.0

Find 131 sgRNAs with CRISPR-Local

Find 206 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTATCCTCCACCGGCTTAT+TGG 0.171714 6.3:+6929326 MS.gene20429:CDS
CTATCCTCCACCGGCTTATT+GGG 0.204943 6.3:+6929327 MS.gene20429:CDS
ATTGAAAACTTCAAAGATTA+TGG 0.206877 6.3:+6928604 MS.gene20429:CDS
GGTGGGAAGCTTTGACAATT+TGG 0.253300 6.3:-6929190 None:intergenic
CTGTTTCGGGTACAGTTATT+TGG 0.254197 6.3:-6928862 None:intergenic
GTTATTGTAGTAGCAGAATT+TGG 0.264718 6.3:-6928711 None:intergenic
GCAAGAAATGCCAGAGATAC+TGG 0.298374 6.3:+6928762 MS.gene20429:CDS
GAGTTAACGGCTGCACTATT+TGG 0.304692 6.3:-6929403 None:intergenic
AGAATTCTGAACAGCTGTTT+CGG 0.322405 6.3:-6928876 None:intergenic
GAATTCTGAACAGCTGTTTC+GGG 0.323421 6.3:-6928875 None:intergenic
GCTGGATTGGCCTGCATGGC+AGG 0.325373 6.3:-6929700 None:intergenic
TTACCTAAGGTTGGCGAGTT+AGG 0.325633 6.3:-6929430 None:intergenic
GGTGTCCATGCTATTACAAC+GGG 0.366283 6.3:-6928690 None:intergenic
TGCTGCTGGATTGGCCTGCA+TGG 0.384791 6.3:-6929704 None:intergenic
GCATTGAACCTTGCTGATAA+AGG 0.387819 6.3:+6929001 MS.gene20429:CDS
GGAGCACCAGCTTCATCTTC+TGG 0.388137 6.3:+6927060 MS.gene20429:CDS
CCTAGACATTGCTGCTGGAT+TGG 0.394113 6.3:-6929713 None:intergenic
ACATGAATCCGTAGACCTTC+CGG 0.402858 6.3:-6929058 None:intergenic
TGATGTGTCCGAAGATTTGA+TGG 0.404612 6.3:-6929116 None:intergenic
ATGGCACAGTCTTTACATTC+AGG 0.405324 6.3:+6928945 MS.gene20429:CDS
ACCTCAATATTGACAACTCT+CGG 0.408584 6.3:+6929583 MS.gene20429:CDS
CAACCTTAGGTAAGCATTCA+AGG 0.416860 6.3:+6929440 MS.gene20429:CDS
CCCCGGCAGTCCAGTATCTC+TGG 0.422379 6.3:-6928772 None:intergenic
GGCAAAAGCCAAGGGGCACC+AGG 0.424018 6.3:-6929229 None:intergenic
TTCCCTTGAATGCTTACCTA+AGG 0.425560 6.3:-6929443 None:intergenic
TTCTCTCTCTTCTTCATCCA+TGG 0.431823 6.3:-6927124 None:intergenic
CGAGTTAGGACCGGAGTTAA+CGG 0.433388 6.3:-6929416 None:intergenic
TTCATTGCTCTTTGAACCAA+AGG 0.434809 6.3:-6929656 None:intergenic
CCCGAGAGTTGTCAATATTG+AGG 0.441514 6.3:-6929584 None:intergenic
AGACACAAACTCAAGATTAG+TGG 0.448603 6.3:+6928541 MS.gene20429:CDS
ATAAAGAAGAAAAGTCCCTT+TGG 0.450455 6.3:+6929515 MS.gene20429:CDS
TGGGAAGACAATTCCGGTAC+CGG 0.459321 6.3:+6927008 MS.gene20429:CDS
TCCGGTAGAGTCACCGGATC+CGG 0.459421 6.3:-6927040 None:intergenic
GCCAGAGATACTGGACTGCC+GGG 0.460238 6.3:+6928771 MS.gene20429:CDS
CCGGAGATCTCTGCCGGATC+CGG 0.461337 6.3:+6927027 MS.gene20429:CDS
TGCCGTGGAATCCATCTCAA+TGG 0.462888 6.3:+6929248 MS.gene20429:CDS
CTCAAACCAACCGACTCAAC+AGG 0.464405 6.3:+6929475 MS.gene20429:CDS
TAAAGAAGAAAAGTCCCTTT+GGG 0.467980 6.3:+6929516 MS.gene20429:CDS
CCATGGATTGTTCCACGCAC+CGG 0.474496 6.3:-6929362 None:intergenic
GGTCCTAACTCGCCAACCTT+AGG 0.475475 6.3:+6929427 MS.gene20429:CDS
CGTACTACCCTGGTGCCCCT+TGG 0.476868 6.3:+6929221 MS.gene20429:CDS
GCAAAACTCACCTGCCATGC+AGG 0.477299 6.3:+6929690 MS.gene20429:CDS
TCAGAACCTGTTGAGTCGGT+TGG 0.477638 6.3:-6929481 None:intergenic
TGCCAGAGATACTGGACTGC+CGG 0.478106 6.3:+6928770 MS.gene20429:CDS
TGATCATTCCATCAAATCTT+CGG 0.483222 6.3:+6929108 MS.gene20429:CDS
CTTGAATGCTTACCTAAGGT+TGG 0.484913 6.3:-6929439 None:intergenic
CACATTTCTCATGGCTCCCC+CGG 0.486523 6.3:-6928789 None:intergenic
GAAGGATGATGGACTCCGTT+TGG 0.487346 6.3:-6928911 None:intergenic
AACTTGTTCAAGAGAACTGC+TGG 0.493603 6.3:-6929164 None:intergenic
TTCCTACGACCGGCACCTAC+AGG 0.494832 6.3:-6928812 None:intergenic
TACAGTTCAGTGAAGGATGA+TGG 0.503313 6.3:-6928922 None:intergenic
TTCGTCAGAACCTGTTGAGT+CGG 0.506659 6.3:-6929485 None:intergenic
GCCGGATCCGGTGACTCTAC+CGG 0.509037 6.3:+6927039 MS.gene20429:CDS
TCTAAACCATGGTTCTTCCA+TGG 0.512969 6.3:+6927107 MS.gene20429:CDS
TCTCAATCCGACTCGCCAAA+CGG 0.513729 6.3:+6928896 MS.gene20429:CDS
CCGGATCCGGCAGAGATCTC+CGG 0.514110 6.3:-6927027 None:intergenic
TCTGGTGATGCTGTTGATGA+TGG 0.515932 6.3:+6927078 MS.gene20429:CDS
CATGGATTGTTCCACGCACC+GGG 0.516259 6.3:-6929361 None:intergenic
TTATAAGCTACATAATTATG+AGG 0.516746 6.3:-6929755 None:intergenic
ATGGACTCCGTTTGGCGAGT+CGG 0.520233 6.3:-6928903 None:intergenic
TCATTAGACCGGAAGGTCTA+CGG 0.522416 6.3:+6929050 MS.gene20429:CDS
CCAATCCAGCAGCAATGTCT+AGG 0.524624 6.3:+6929713 MS.gene20429:CDS
TCTCACCCAATCATCAGAAA+AGG 0.525594 6.3:+6928508 MS.gene20429:CDS
CATCCTTCACTGAACTGTAA+TGG 0.526917 6.3:+6928926 MS.gene20429:CDS
AGTAAGGCGGACGCGATTCG+TGG 0.530810 6.3:+6929616 MS.gene20429:CDS
CCGGCAGAGATCTCCGGTAC+CGG 0.531399 6.3:-6927021 None:intergenic
ATTGACCTAGACATTGCTGC+TGG 0.532105 6.3:-6929718 None:intergenic
AGAAGATGAAGCTGGTGCTC+CGG 0.532773 6.3:-6927058 None:intergenic
GCTGCACTATTTGGTGAAGA+AGG 0.534001 6.3:-6929394 None:intergenic
ACTTGAGAGCTCCATTGAGA+TGG 0.535364 6.3:-6929259 None:intergenic
GTGGCATGGCAAATCCTTGT+GGG 0.536245 6.3:-6929303 None:intergenic
TGGTGCTCCGGTAGAGTCAC+CGG 0.536837 6.3:-6927046 None:intergenic
TGCGTGGAACAATCCATGGC+TGG 0.539604 6.3:+6929366 MS.gene20429:CDS
CCTCAATATTGACAACTCTC+GGG 0.541239 6.3:+6929584 MS.gene20429:CDS
GTAAGGCGGACGCGATTCGT+GGG 0.543719 6.3:+6929617 MS.gene20429:CDS
CAAGGGGCACCAGGGTAGTA+CGG 0.543849 6.3:-6929220 None:intergenic
CTCCATTGAGATGGATTCCA+CGG 0.551011 6.3:-6929250 None:intergenic
TGAATCGACCAAATGTAAGA+AGG 0.555366 6.3:+6928472 MS.gene20429:CDS
TATTAACTCCTTTATCAGCA+AGG 0.557069 6.3:-6929009 None:intergenic
TATCCTCCACCGGCTTATTG+GGG 0.557577 6.3:+6929328 MS.gene20429:CDS
ATTCTTGTTCTTCCTACGAC+CGG 0.559859 6.3:-6928822 None:intergenic
CTTCATCCATGGAAGAACCA+TGG 0.559893 6.3:-6927113 None:intergenic
ATGCTAAAACCCCAATAAGC+CGG 0.561380 6.3:-6929337 None:intergenic
TGGTGTCCATGCTATTACAA+CGG 0.562401 6.3:-6928691 None:intergenic
ATCATGGAAGCAAAAGACCC+TGG 0.564274 6.3:+6926973 None:intergenic
GGATTCCACGGCAAAAGCCA+AGG 0.568149 6.3:-6929238 None:intergenic
TGCCTGTAGGTGCCGGTCGT+AGG 0.569339 6.3:+6928810 MS.gene20429:CDS
CCGGTACCGGAGATCTCTGC+CGG 0.569630 6.3:+6927021 MS.gene20429:CDS
TTTGCTCGTCCTCAGTGGAG+GGG 0.569766 6.3:-6928577 None:intergenic
CGGATTCATGTACCCTATGT+TGG 0.570976 6.3:+6929070 MS.gene20429:CDS
GTGTCCCCGTTGTAATAGCA+TGG 0.578322 6.3:+6928685 MS.gene20429:CDS
AAACCCCAATAAGCCGGTGG+AGG 0.580141 6.3:-6929331 None:intergenic
ACCTACAGGCACATTTCTCA+TGG 0.581950 6.3:-6928798 None:intergenic
GGGTAGTACGGAACTTGCGG+TGG 0.584630 6.3:-6929208 None:intergenic
AACGGAATCATTAGACCGGA+AGG 0.586342 6.3:+6929043 MS.gene20429:CDS
TAAGGTTGGCGAGTTAGGAC+CGG 0.591433 6.3:-6929425 None:intergenic
CCGCAAGTTCCGTACTACCC+TGG 0.592010 6.3:+6929211 MS.gene20429:CDS
CCGGTGCGTGGAACAATCCA+TGG 0.594068 6.3:+6929362 MS.gene20429:CDS
AGAAATGTGCCTGTAGGTGC+CGG 0.595484 6.3:+6928803 MS.gene20429:CDS
ACGTTGAGGATTGATGACTT+AGG 0.598062 6.3:+6929547 MS.gene20429:CDS
GCATCACCAGAAGATGAAGC+TGG 0.603079 6.3:-6927066 None:intergenic
TCATGGAAGCAAAAGACCCT+GGG 0.603420 6.3:+6926974 None:intergenic
CCAGGGTAGTACGGAACTTG+CGG 0.603954 6.3:-6929211 None:intergenic
GATTCCACGGCAAAAGCCAA+GGG 0.605584 6.3:-6929237 None:intergenic
AATAGTGCAGCCGTTAACTC+CGG 0.609641 6.3:+6929406 MS.gene20429:CDS
AACCTTAGGTAAGCATTCAA+GGG 0.609767 6.3:+6929441 MS.gene20429:CDS
GAAGAAGGTTGTGCCAGCCA+TGG 0.610893 6.3:-6929379 None:intergenic
TTTGGGTTCCGAAAACGTTG+AGG 0.613827 6.3:+6929533 MS.gene20429:CDS
CCAGAGATACTGGACTGCCG+GGG 0.615553 6.3:+6928772 MS.gene20429:CDS
ATGCTATTACAACGGGGACA+CGG 0.617301 6.3:-6928683 None:intergenic
TAAGGCGGACGCGATTCGTG+GGG 0.619512 6.3:+6929618 MS.gene20429:CDS
AGAAGAGAGAGAAATTGATG+AGG 0.620945 6.3:+6927134 MS.gene20429:CDS
CATGCCACTCTATCCTCCAC+CGG 0.623143 6.3:+6929318 MS.gene20429:CDS
TAAGCCGGTGGAGGATAGAG+TGG 0.624963 6.3:-6929322 None:intergenic
CAGAGATACTGGACTGCCGG+GGG 0.627532 6.3:+6928773 MS.gene20429:CDS
GCAAAAGCCAAGGGGCACCA+GGG 0.629020 6.3:-6929228 None:intergenic
TTCTTGAATTCAGGACACAA+TGG 0.631423 6.3:+6928445 MS.gene20429:intron
AGTGGCATGGCAAATCCTTG+TGG 0.633181 6.3:-6929304 None:intergenic
AGATTGCATTGATTCACACA+AGG 0.639343 6.3:-6928978 None:intergenic
GACTCAACAGGTTCTGACGA+AGG 0.640024 6.3:+6929487 MS.gene20429:CDS
AAGGCGGACGCGATTCGTGG+GGG 0.643400 6.3:+6929619 MS.gene20429:CDS
GATGGTATCATTCTAAACCA+TGG 0.655530 6.3:+6927096 MS.gene20429:CDS
CGGTGGAGGATAGAGTGGCA+TGG 0.658087 6.3:-6929317 None:intergenic
GTGCCATTACAGTTCAGTGA+AGG 0.658325 6.3:-6928929 None:intergenic
GATTGCATTGATTCACACAA+GGG 0.666221 6.3:-6928977 None:intergenic
ATCAATTAACCCCTCCACTG+AGG 0.675714 6.3:+6928568 MS.gene20429:CDS
GGTAGTACGGAACTTGCGGT+GGG 0.677836 6.3:-6929207 None:intergenic
CTAAAACCCCAATAAGCCGG+TGG 0.682119 6.3:-6929334 None:intergenic
GCCATGAGAAATGTGCCTGT+AGG 0.725661 6.3:+6928797 MS.gene20429:CDS
ATTCCACGGCAAAAGCCAAG+GGG 0.744240 6.3:-6929236 None:intergenic
GTGTCCATGCTATTACAACG+GGG 0.773351 6.3:-6928689 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAGAAAAAACAGATTTA+AGG + chr6.3:6927972-6927991 MS.gene20429:intron 15.0%
!! AACAAAAAAACACACATAAA+AGG - chr6.3:6927278-6927297 None:intergenic 20.0%
!! ATTGAAAACTTCAAAGATTA+TGG + chr6.3:6928604-6928623 MS.gene20429:CDS 20.0%
!! CAAATGTGAAAATATTTAGT+GGG + chr6.3:6927196-6927215 MS.gene20429:intron 20.0%
!! TCAAATGTGAAAATATTTAG+TGG + chr6.3:6927195-6927214 MS.gene20429:intron 20.0%
!!! ATTTTCACATTTGAAATCAA+GGG - chr6.3:6927189-6927208 None:intergenic 20.0%
!!! GATCATAGTTTTTTTTTGTT+TGG + chr6.3:6927534-6927553 MS.gene20429:intron 20.0%
!!! TATTTTCACATTTGAAATCA+AGG - chr6.3:6927190-6927209 None:intergenic 20.0%
!!! TTCAATTTTGGAATTGATTT+TGG + chr6.3:6927363-6927382 MS.gene20429:intron 20.0%
!!! TTTGGATTTTTGTGTTTTTT+TGG + chr6.3:6927319-6927338 MS.gene20429:intron 20.0%
! AAAAACAGATTTAAGGAGTA+AGG + chr6.3:6927979-6927998 MS.gene20429:intron 25.0%
! CTAGAACTAAATCAAAACTA+GGG - chr6.3:6927565-6927584 None:intergenic 25.0%
! GCTTAAGCTTAACATTAAAT+TGG + chr6.3:6927445-6927464 MS.gene20429:intron 25.0%
! TCATAATAACGAATCTAAGA+TGG - chr6.3:6927623-6927642 None:intergenic 25.0%
! TTCAGAATCAGATATAGAAA+AGG - chr6.3:6927880-6927899 None:intergenic 25.0%
!! ATCTTTTTCCTTCTTACATT+TGG - chr6.3:6928483-6928502 None:intergenic 25.0%
!!! ATCTGATTCAAAGTTTTAAC+CGG + chr6.3:6927710-6927729 MS.gene20429:intron 25.0%
!!! GGAATTGATTTTGGTTTTTA+AGG + chr6.3:6927372-6927391 MS.gene20429:intron 25.0%
!!! GTTTGGTTTTGTTTCAATTT+TGG + chr6.3:6927351-6927370 MS.gene20429:intron 25.0%
!!! TGTGTTTTTTTGTTGTTGAA+GGG + chr6.3:6927284-6927303 MS.gene20429:intron 25.0%
!!! TTTTTTGGATCTATGTTGTT+TGG + chr6.3:6927334-6927353 MS.gene20429:intron 25.0%
ACGATATCTATACTGAAACT+TGG - chr6.3:6927658-6927677 None:intergenic 30.0%
ATAAACTCTATTTACTCCTC+TGG - chr6.3:6927781-6927800 None:intergenic 30.0%
ATAAAGAAGAAAAGTCCCTT+TGG + chr6.3:6929515-6929534 MS.gene20429:CDS 30.0%
CATAAACACTTGAGACTATT+CGG + chr6.3:6928239-6928258 MS.gene20429:intron 30.0%
GAAGGGTTTAGTATTTAGTT+TGG + chr6.3:6927301-6927320 MS.gene20429:intron 30.0%
GCTAGAACTAAATCAAAACT+AGG - chr6.3:6927566-6927585 None:intergenic 30.0%
GTTAAACACAATCAATACTC+TGG - chr6.3:6927834-6927853 None:intergenic 30.0%
GTTAATATTTCCGCGAAAAA+CGG + chr6.3:6929025-6929044 MS.gene20429:CDS 30.0%
GTTATTGTAGTAGCAGAATT+TGG - chr6.3:6928714-6928733 None:intergenic 30.0%
TAAAGAAGAAAAGTCCCTTT+GGG + chr6.3:6929516-6929535 MS.gene20429:CDS 30.0%
TATTAACTCCTTTATCAGCA+AGG - chr6.3:6929012-6929031 None:intergenic 30.0%
TCTCGGGATTAAAAATAGTA+AGG + chr6.3:6929600-6929619 MS.gene20429:CDS 30.0%
TGATCATTCCATCAAATCTT+CGG + chr6.3:6929108-6929127 MS.gene20429:CDS 30.0%
! ATCTTTCTCTATTTAGCTTC+TGG + chr6.3:6927926-6927945 MS.gene20429:intron 30.0%
! TCAAGAGTTTTCTTGAATTC+AGG + chr6.3:6928436-6928455 MS.gene20429:intron 30.0%
! TGACTATAGACAAAAGTACA+AGG - chr6.3:6928064-6928083 None:intergenic 30.0%
! TGTGAAAATATTTAGTGGGT+TGG + chr6.3:6927200-6927219 MS.gene20429:intron 30.0%
!!! GTGTGTTTTTTTGTTGTTGA+AGG + chr6.3:6927283-6927302 MS.gene20429:intron 30.0%
!!! TATTTTGTCTGGCTTTTTCA+GGG - chr6.3:6928660-6928679 None:intergenic 30.0%
!!! TTTTGTCATACTTTCTGGTT+TGG + chr6.3:6928028-6928047 MS.gene20429:intron 30.0%
AACCTTAGGTAAGCATTCAA+GGG + chr6.3:6929441-6929460 MS.gene20429:CDS 35.0%
AATTAGCGCTTAATGCGTAA+AGG - chr6.3:6928374-6928393 None:intergenic 35.0%
ACCTCAATATTGACAACTCT+CGG + chr6.3:6929583-6929602 MS.gene20429:CDS 35.0%
AGAAGAGAGAGAAATTGATG+AGG + chr6.3:6927134-6927153 MS.gene20429:CDS 35.0%
AGAATTCTGAACAGCTGTTT+CGG - chr6.3:6928879-6928898 None:intergenic 35.0%
AGACACAAACTCAAGATTAG+TGG + chr6.3:6928541-6928560 MS.gene20429:CDS 35.0%
CGGGATTAAAAATAGTAAGG+CGG + chr6.3:6929603-6929622 MS.gene20429:CDS 35.0%
GAAAAACGGAATCATTAGAC+CGG + chr6.3:6929039-6929058 MS.gene20429:CDS 35.0%
GATGCTGTTGTAGTTTCTAA+TGG + chr6.3:6927423-6927442 MS.gene20429:intron 35.0%
GATGGTATCATTCTAAACCA+TGG + chr6.3:6927096-6927115 MS.gene20429:CDS 35.0%
TCTGGCATTTCTTGCAAAAA+TGG - chr6.3:6928757-6928776 None:intergenic 35.0%
TGAATCGACCAAATGTAAGA+AGG + chr6.3:6928472-6928491 MS.gene20429:CDS 35.0%
TTCATTGCTCTTTGAACCAA+AGG - chr6.3:6929659-6929678 None:intergenic 35.0%
TTCTTGAATTCAGGACACAA+TGG + chr6.3:6928445-6928464 MS.gene20429:intron 35.0%
TTGTCTATAGTCAGCTAACA+TGG + chr6.3:6928071-6928090 MS.gene20429:intron 35.0%
! ACTCTTTTCTTCACCAACAT+AGG - chr6.3:6929086-6929105 None:intergenic 35.0%
! AGCTTCTGGATTTTGTATGT+TGG + chr6.3:6927940-6927959 MS.gene20429:intron 35.0%
! AGTGACCTTTTCTGATGATT+GGG - chr6.3:6928516-6928535 None:intergenic 35.0%
! CTCTTTTCTTCACCAACATA+GGG - chr6.3:6929085-6929104 None:intergenic 35.0%
! GCTCATTTTGTCATACTTTC+TGG + chr6.3:6928023-6928042 MS.gene20429:intron 35.0%
! TCATCAATCCTCAACGTTTT+CGG - chr6.3:6929544-6929563 None:intergenic 35.0%
!! AGATTGCATTGATTCACACA+AGG - chr6.3:6928981-6929000 None:intergenic 35.0%
!! GATTGCATTGATTCACACAA+GGG - chr6.3:6928980-6928999 None:intergenic 35.0%
!! GCTATAGTACTGATTATCTG+TGG + chr6.3:6928100-6928119 MS.gene20429:intron 35.0%
!! TCTAATGATTCCGTTTTTCG+CGG - chr6.3:6929038-6929057 None:intergenic 35.0%
!!! GTATTTTGTCTGGCTTTTTC+AGG - chr6.3:6928661-6928680 None:intergenic 35.0%
AATCCTTGTGGGAAAAAAGC+AGG - chr6.3:6929295-6929314 None:intergenic 40.0%
ATGCTAAAACCCCAATAAGC+CGG - chr6.3:6929340-6929359 None:intergenic 40.0%
ATGGCACAGTCTTTACATTC+AGG + chr6.3:6928945-6928964 MS.gene20429:CDS 40.0%
ATTCTTGTTCTTCCTACGAC+CGG - chr6.3:6928825-6928844 None:intergenic 40.0%
CAACCTTAGGTAAGCATTCA+AGG + chr6.3:6929440-6929459 MS.gene20429:CDS 40.0%
CATCCTTCACTGAACTGTAA+TGG + chr6.3:6928926-6928945 MS.gene20429:CDS 40.0%
CATTTCTTGCAAAAATGGCG+AGG - chr6.3:6928752-6928771 None:intergenic 40.0%
CCTCAATATTGACAACTCTC+GGG + chr6.3:6929584-6929603 MS.gene20429:CDS 40.0%
CTTGAATGCTTACCTAAGGT+TGG - chr6.3:6929442-6929461 None:intergenic 40.0%
GCATTGAACCTTGCTGATAA+AGG + chr6.3:6929001-6929020 MS.gene20429:CDS 40.0%
TACAGTTCAGTGAAGGATGA+TGG - chr6.3:6928925-6928944 None:intergenic 40.0%
TCTAAACCATGGTTCTTCCA+TGG + chr6.3:6927107-6927126 MS.gene20429:CDS 40.0%
TCTCACCCAATCATCAGAAA+AGG + chr6.3:6928508-6928527 MS.gene20429:CDS 40.0%
TGATGTGTCCGAAGATTTGA+TGG - chr6.3:6929119-6929138 None:intergenic 40.0%
TGGTGTCCATGCTATTACAA+CGG - chr6.3:6928694-6928713 None:intergenic 40.0%
TTCCCTTGAATGCTTACCTA+AGG - chr6.3:6929446-6929465 None:intergenic 40.0%
TTCTCTCTCTTCTTCATCCA+TGG - chr6.3:6927127-6927146 None:intergenic 40.0%
! AACTTGTTCAAGAGAACTGC+TGG - chr6.3:6929167-6929186 None:intergenic 40.0%
! ACGTTGAGGATTGATGACTT+AGG + chr6.3:6929547-6929566 MS.gene20429:CDS 40.0%
! CAGTGACCTTTTCTGATGAT+TGG - chr6.3:6928517-6928536 None:intergenic 40.0%
! CTGTTTCGGGTACAGTTATT+TGG - chr6.3:6928865-6928884 None:intergenic 40.0%
! GAATTCTGAACAGCTGTTTC+GGG - chr6.3:6928878-6928897 None:intergenic 40.0%
!! GCTTTTTGGGAAGACAATTC+CGG + chr6.3:6927002-6927021 MS.gene20429:CDS 40.0%
!!! AGTGGGTTGGTGTTAGATTT+TGG + chr6.3:6927213-6927232 MS.gene20429:intron 40.0%
AACGGAATCATTAGACCGGA+AGG + chr6.3:6929043-6929062 MS.gene20429:CDS 45.0%
AATAGTGCAGCCGTTAACTC+CGG + chr6.3:6929406-6929425 MS.gene20429:CDS 45.0%
ACATGAATCCGTAGACCTTC+CGG - chr6.3:6929061-6929080 None:intergenic 45.0%
ACCTACAGGCACATTTCTCA+TGG - chr6.3:6928801-6928820 None:intergenic 45.0%
ACTTGAGAGCTCCATTGAGA+TGG - chr6.3:6929262-6929281 None:intergenic 45.0%
ATCAATTAACCCCTCCACTG+AGG + chr6.3:6928568-6928587 MS.gene20429:CDS 45.0%
ATGCTATTACAACGGGGACA+CGG - chr6.3:6928686-6928705 None:intergenic 45.0%
ATTGACCTAGACATTGCTGC+TGG - chr6.3:6929721-6929740 None:intergenic 45.0%
CCAATACATCGTTTGACCAG+AGG + chr6.3:6927762-6927781 MS.gene20429:intron 45.0%
CCCGAGAGTTGTCAATATTG+AGG - chr6.3:6929587-6929606 None:intergenic 45.0%
CCTCTGGTCAAACGATGTAT+TGG - chr6.3:6927765-6927784 None:intergenic 45.0%
CGGATTCATGTACCCTATGT+TGG + chr6.3:6929070-6929089 MS.gene20429:CDS 45.0%
CTTCATCCATGGAAGAACCA+TGG - chr6.3:6927116-6927135 None:intergenic 45.0%
GAACCAGACACATCAACTTC+CGG - chr6.3:6927732-6927751 None:intergenic 45.0%
GAGTTAACGGCTGCACTATT+TGG - chr6.3:6929406-6929425 None:intergenic 45.0%
GCAAGAAATGCCAGAGATAC+TGG + chr6.3:6928762-6928781 MS.gene20429:CDS 45.0%
GGTGTCCATGCTATTACAAC+GGG - chr6.3:6928693-6928712 None:intergenic 45.0%
GTGTCCATGCTATTACAACG+GGG - chr6.3:6928692-6928711 None:intergenic 45.0%
TCATTAGACCGGAAGGTCTA+CGG + chr6.3:6929050-6929069 MS.gene20429:CDS 45.0%
TCCCAAAAAGCTTGATCCCA+GGG - chr6.3:6926993-6927012 None:intergenic 45.0%
TTACCTAAGGTTGGCGAGTT+AGG - chr6.3:6929433-6929452 None:intergenic 45.0%
TTCCCAAAAAGCTTGATCCC+AGG - chr6.3:6926994-6927013 None:intergenic 45.0%
TTCGTCAGAACCTGTTGAGT+CGG - chr6.3:6929488-6929507 None:intergenic 45.0%
! ACCCTGGGATCAAGCTTTTT+GGG + chr6.3:6926989-6927008 MS.gene20429:CDS 45.0%
! CAACGTTTTCGGAACCCAAA+GGG - chr6.3:6929533-6929552 None:intergenic 45.0%
! CTCCATTGAGATGGATTCCA+CGG - chr6.3:6929253-6929272 None:intergenic 45.0%
! GCTGCACTATTTGGTGAAGA+AGG - chr6.3:6929397-6929416 None:intergenic 45.0%
! GGAGGACTTTTCAAAGCCTT+TGG + chr6.3:6929640-6929659 MS.gene20429:CDS 45.0%
! GGTGGGAAGCTTTGACAATT+TGG - chr6.3:6929193-6929212 None:intergenic 45.0%
! GTGCCATTACAGTTCAGTGA+AGG - chr6.3:6928932-6928951 None:intergenic 45.0%
! TCAACGTTTTCGGAACCCAA+AGG - chr6.3:6929534-6929553 None:intergenic 45.0%
! TCTGGTGATGCTGTTGATGA+TGG + chr6.3:6927078-6927097 MS.gene20429:CDS 45.0%
! TGTATTTTGCTCGTCCTCAG+TGG - chr6.3:6928585-6928604 None:intergenic 45.0%
! TTTGGGTTCCGAAAACGTTG+AGG + chr6.3:6929533-6929552 MS.gene20429:CDS 45.0%
!! TAACCGGAAGTTGATGTGTC+TGG + chr6.3:6927726-6927745 MS.gene20429:intron 45.0%
!! TATTGGGGTTTTAGCATGCC+CGG + chr6.3:6929343-6929362 MS.gene20429:CDS 45.0%
AGAAATGTGCCTGTAGGTGC+CGG + chr6.3:6928803-6928822 MS.gene20429:CDS 50.0%
AGAAGATGAAGCTGGTGCTC+CGG - chr6.3:6927061-6927080 None:intergenic 50.0%
AGTGGCATGGCAAATCCTTG+TGG - chr6.3:6929307-6929326 None:intergenic 50.0%
ATTCCACGGCAAAAGCCAAG+GGG - chr6.3:6929239-6929258 None:intergenic 50.0%
CCAATCCAGCAGCAATGTCT+AGG + chr6.3:6929713-6929732 MS.gene20429:CDS 50.0%
CCTAGACATTGCTGCTGGAT+TGG - chr6.3:6929716-6929735 None:intergenic 50.0%
CCTTGTGGGAAAAAAGCAGG+TGG - chr6.3:6929292-6929311 None:intergenic 50.0%
CGAGTTAGGACCGGAGTTAA+CGG - chr6.3:6929419-6929438 None:intergenic 50.0%
CTAAAACCCCAATAAGCCGG+TGG - chr6.3:6929337-6929356 None:intergenic 50.0%
GATTCCACGGCAAAAGCCAA+GGG - chr6.3:6929240-6929259 None:intergenic 50.0%
GCATCACCAGAAGATGAAGC+TGG - chr6.3:6927069-6927088 None:intergenic 50.0%
GCCATGAGAAATGTGCCTGT+AGG + chr6.3:6928797-6928816 MS.gene20429:CDS 50.0%
GTGGCATGGCAAATCCTTGT+GGG - chr6.3:6929306-6929325 None:intergenic 50.0%
GTGTCCCCGTTGTAATAGCA+TGG + chr6.3:6928685-6928704 MS.gene20429:CDS 50.0%
TAAGGTTGGCGAGTTAGGAC+CGG - chr6.3:6929428-6929447 None:intergenic 50.0%
TCAGAACCTGTTGAGTCGGT+TGG - chr6.3:6929484-6929503 None:intergenic 50.0%
TCTTGCAAAAATGGCGAGGC+TGG - chr6.3:6928748-6928767 None:intergenic 50.0%
TGCCGTGGAATCCATCTCAA+TGG + chr6.3:6929248-6929267 MS.gene20429:CDS 50.0%
TGGGAAGACAATTCCGGTAC+CGG + chr6.3:6927008-6927027 MS.gene20429:CDS 50.0%
TGTGGGAAAAAAGCAGGTGG+TGG - chr6.3:6929289-6929308 None:intergenic 50.0%
! ATTTTGCTCGTCCTCAGTGG+AGG - chr6.3:6928582-6928601 None:intergenic 50.0%
! CTCAAACCAACCGACTCAAC+AGG + chr6.3:6929475-6929494 MS.gene20429:CDS 50.0%
! GACCCTGGGATCAAGCTTTT+TGG + chr6.3:6926988-6927007 MS.gene20429:CDS 50.0%
! GACTCAACAGGTTCTGACGA+AGG + chr6.3:6929487-6929506 MS.gene20429:CDS 50.0%
! GGACACGGCAGTATTTTGTC+TGG - chr6.3:6928671-6928690 None:intergenic 50.0%
! TCTCAATCCGACTCGCCAAA+CGG + chr6.3:6928896-6928915 MS.gene20429:CDS 50.0%
! TTTTGCTCGTCCTCAGTGGA+GGG - chr6.3:6928581-6928600 None:intergenic 50.0%
!! CTATCCTCCACCGGCTTATT+GGG + chr6.3:6929327-6929346 MS.gene20429:CDS 50.0%
!! GAAGGATGATGGACTCCGTT+TGG - chr6.3:6928914-6928933 None:intergenic 50.0%
!! TATCCTCCACCGGCTTATTG+GGG + chr6.3:6929328-6929347 MS.gene20429:CDS 50.0%
!! TCTATCCTCCACCGGCTTAT+TGG + chr6.3:6929326-6929345 MS.gene20429:CDS 50.0%
!!! CCACCTGCTTTTTTCCCACA+AGG + chr6.3:6929289-6929308 MS.gene20429:CDS 50.0%
AAACCCCAATAAGCCGGTGG+AGG - chr6.3:6929334-6929353 None:intergenic 55.0%
ATGGACTCCGTTTGGCGAGT+CGG - chr6.3:6928906-6928925 None:intergenic 55.0%
CACATTTCTCATGGCTCCCC+CGG - chr6.3:6928792-6928811 None:intergenic 55.0%
CATGCCACTCTATCCTCCAC+CGG + chr6.3:6929318-6929337 MS.gene20429:CDS 55.0%
CCAGGGTAGTACGGAACTTG+CGG - chr6.3:6929214-6929233 None:intergenic 55.0%
GAAGAAGGTTGTGCCAGCCA+TGG - chr6.3:6929382-6929401 None:intergenic 55.0%
GCAAAACTCACCTGCCATGC+AGG + chr6.3:6929690-6929709 MS.gene20429:CDS 55.0%
GGATTCCACGGCAAAAGCCA+AGG - chr6.3:6929241-6929260 None:intergenic 55.0%
GGTAGTACGGAACTTGCGGT+GGG - chr6.3:6929210-6929229 None:intergenic 55.0%
GGTCCTAACTCGCCAACCTT+AGG + chr6.3:6929427-6929446 MS.gene20429:CDS 55.0%
TAAGCCGGTGGAGGATAGAG+TGG - chr6.3:6929325-6929344 None:intergenic 55.0%
TGCCAGAGATACTGGACTGC+CGG + chr6.3:6928770-6928789 MS.gene20429:CDS 55.0%
TGCGTGGAACAATCCATGGC+TGG + chr6.3:6929366-6929385 MS.gene20429:CDS 55.0%
TTTGCTCGTCCTCAGTGGAG+GGG - chr6.3:6928580-6928599 None:intergenic 55.0%
! CATGGATTGTTCCACGCACC+GGG - chr6.3:6929364-6929383 None:intergenic 55.0%
! CCATGGATTGTTCCACGCAC+CGG - chr6.3:6929365-6929384 None:intergenic 55.0%
! GGAGCACCAGCTTCATCTTC+TGG + chr6.3:6927060-6927079 MS.gene20429:CDS 55.0%
AGTAAGGCGGACGCGATTCG+TGG + chr6.3:6929616-6929635 MS.gene20429:CDS 60.0%
CAGAGATACTGGACTGCCGG+GGG + chr6.3:6928773-6928792 MS.gene20429:CDS 60.0%
CCAGAGATACTGGACTGCCG+GGG + chr6.3:6928772-6928791 MS.gene20429:CDS 60.0%
CCGCAAGTTCCGTACTACCC+TGG + chr6.3:6929211-6929230 MS.gene20429:CDS 60.0%
CCGGTGCGTGGAACAATCCA+TGG + chr6.3:6929362-6929381 MS.gene20429:CDS 60.0%
CGGTGGAGGATAGAGTGGCA+TGG - chr6.3:6929320-6929339 None:intergenic 60.0%
GCCAGAGATACTGGACTGCC+GGG + chr6.3:6928771-6928790 MS.gene20429:CDS 60.0%
GGGTAGTACGGAACTTGCGG+TGG - chr6.3:6929211-6929230 None:intergenic 60.0%
GTAAGGCGGACGCGATTCGT+GGG + chr6.3:6929617-6929636 MS.gene20429:CDS 60.0%
TAAGGCGGACGCGATTCGTG+GGG + chr6.3:6929618-6929637 MS.gene20429:CDS 60.0%
TCCGGTAGAGTCACCGGATC+CGG - chr6.3:6927043-6927062 None:intergenic 60.0%
TGGTGCTCCGGTAGAGTCAC+CGG - chr6.3:6927049-6927068 None:intergenic 60.0%
TTCCTACGACCGGCACCTAC+AGG - chr6.3:6928815-6928834 None:intergenic 60.0%
!! CAAGGGGCACCAGGGTAGTA+CGG - chr6.3:6929223-6929242 None:intergenic 60.0%
!! GCAAAAGCCAAGGGGCACCA+GGG - chr6.3:6929231-6929250 None:intergenic 60.0%
!! GTTTTAGCATGCCCGGTGCG+TGG + chr6.3:6929350-6929369 MS.gene20429:CDS 60.0%
!! TGCTGCTGGATTGGCCTGCA+TGG - chr6.3:6929707-6929726 None:intergenic 60.0%
AAGGCGGACGCGATTCGTGG+GGG + chr6.3:6929619-6929638 MS.gene20429:CDS 65.0%
CCCCGGCAGTCCAGTATCTC+TGG - chr6.3:6928775-6928794 None:intergenic 65.0%
CCGGAGATCTCTGCCGGATC+CGG + chr6.3:6927027-6927046 MS.gene20429:CDS 65.0%
CCGGATCCGGCAGAGATCTC+CGG - chr6.3:6927030-6927049 None:intergenic 65.0%
CCGGCAGAGATCTCCGGTAC+CGG - chr6.3:6927024-6927043 None:intergenic 65.0%
CGTACTACCCTGGTGCCCCT+TGG + chr6.3:6929221-6929240 MS.gene20429:CDS 65.0%
GCCGGATCCGGTGACTCTAC+CGG + chr6.3:6927039-6927058 MS.gene20429:CDS 65.0%
! CCGGTACCGGAGATCTCTGC+CGG + chr6.3:6927021-6927040 MS.gene20429:CDS 65.0%
!! GCTGGATTGGCCTGCATGGC+AGG - chr6.3:6929703-6929722 None:intergenic 65.0%
!! GGCAAAAGCCAAGGGGCACC+AGG - chr6.3:6929232-6929251 None:intergenic 65.0%
!! GTGCCCCTTGGCTTTTGCCG+TGG + chr6.3:6929233-6929252 MS.gene20429:CDS 65.0%
!! TGCCTGTAGGTGCCGGTCGT+AGG + chr6.3:6928810-6928829 MS.gene20429:CDS 65.0%
GCGGACGCGATTCGTGGGGG+AGG + chr6.3:6929622-6929641 MS.gene20429:CDS 75.0%


Chromosome Type Strat End Strand Name
chr6.3 gene 6926976 6929762 6926976 ID=MS.gene20429
chr6.3 mRNA 6926976 6929762 6926976 ID=MS.gene20429.t1;Parent=MS.gene20429
chr6.3 exon 6926976 6927155 6926976 ID=MS.gene20429.t1.exon1;Parent=MS.gene20429.t1
chr6.3 CDS 6926976 6927155 6926976 ID=cds.MS.gene20429.t1;Parent=MS.gene20429.t1
chr6.3 exon 6928458 6929762 6928458 ID=MS.gene20429.t1.exon2;Parent=MS.gene20429.t1
chr6.3 CDS 6928458 6929762 6928458 ID=cds.MS.gene20429.t1;Parent=MS.gene20429.t1
Gene Sequence

>MS.gene20429

ATGGAAGCAAAAGACCCTGGGATCAAGCTTTTTGGGAAGACAATTCCGGTACCGGAGATCTCTGCCGGATCCGGTGACTCTACCGGAGCACCAGCTTCATCTTCTGGTGATGCTGTTGATGATGGTATCATTCTAAACCATGGTTCTTCCATGGATGAAGAAGAGAGAGAAATTGATGAGGTATGAAGAAATTTTTGATTTTGAGAGTGACCCTTGATTTCAAATGTGAAAATATTTAGTGGGTTGGTGTTAGATTTTGGTTTCATGAAATTGAAGATTATGTTGACTTGCTACGTTAACCTTTTATGTGTGTTTTTTTGTTGTTGAAGGGTTTAGTATTTAGTTTGGATTTTTGTGTTTTTTTGGATCTATGTTGTTTGGTTTTGTTTCAATTTTGGAATTGATTTTGGTTTTTAAGGTTTTCAATTTTCATGATGTTTTTGATTTGATGCTGTTGTAGTTTCTAATGGCTTAAGCTTAACATTAAATTGGTTAAGTATTTTGAATTAATTCAATAGATACTTGATTTTATTAACATTATGTGCTTAATTACTTTCTGATCATAGTTTTTTTTTGTTTGGAAAAACCCTAGTTTTGATTTAGTTCTAGCTCTTGAATCTAAATGATACTATCTGAATCAGAGTCCATCTTAGATTCGTTATTATGAATGATATATGCACCAAGTTTCAGTATAGATATCGTCGTATCAAATATAAGCAAAATAAAGTTGATGTATCTGATTCAAAGTTTTAACCGGAAGTTGATGTGTCTGGTTCAAATTTTTAACCAATACATCGTTTGACCAGAGGAGTAAATAGAGTTTATAATGTCAAGATCTTTTTGTAAATTTTGAGACCAGAGTATTGATTGTGTTTAACATGTATAGTTCAATCTAAAGTTTCCTTTTCTATATCTGATTCTGAATATATTCTCTTTTGTATTGTGAAAATATCTTTCTCTATTTAGCTTCTGGATTTTGTATGTTGGTTTTTCTAAATAAAGAAAAAACAGATTTAAGGAGTAAGGACTGTCATATTTCAAGTTTTAGCTCATTTTGTCATACTTTCTGGTTTGGTTTTCTTGTTCCTTGTACTTTTGTCTATAGTCAGCTAACATGGTTAAATGCTATAGTACTGATTATCTGTGGACATAAACACTTGTGAGACTATTCTTATAGAAACAGCTTATGACATGTACATAAACTGTTTTCAGCTTACATAAACTGTTTTCAGCTTATGTACAAATAAGTGTTTATGACATGTACATAAACACTTGAGACTATTCGGAAGAGCTTATAGAAACAGCTTATGACATGTATATAAACACTTGTAAGACTATTCAGAAAAGCTTATATGAAAACAATTTAATTTAATTTTTTCTTTTGTATGTGATAAGCCTTTACGCATTAAGCGCTAATTAAGCTGTTTGTACTAAATTTTTAGCTTAGAATATCATACTAATCAAGAGTTTTCTTGAATTCAGGACACAATGGAAGATGAATCGACCAAATGTAAGAAGGAAAAAGATGAAGCTCTCACCCAATCATCAGAAAAGGTCACTGATCTAGACACAAACTCAAGATTAGTGGAAGAATCAATTAACCCCTCCACTGAGGACGAGCAAAATACATTGAAAACTTCAAAGATTATGGAAGAACATACTGAGAATTCTCATGATAAGACCCTGAAAAAGCCAGACAAAATACTGCCGTGTCCCCGTTGTAATAGCATGGACACCAAATTCTGCTACTACAATAACTACAATGTTAACCAGCCTCGCCATTTTTGCAAGAAATGCCAGAGATACTGGACTGCCGGGGGAGCCATGAGAAATGTGCCTGTAGGTGCCGGTCGTAGGAAGAACAAGAATTCTGCTTCTCACTTTCGCCAAATAACTGTACCCGAAACAGCTGTTCAGAATTCTCAATCCGACTCGCCAAACGGAGTCCATCATCCTTCACTGAACTGTAATGGCACAGTCTTTACATTCAGGACTGATACACCCTTGTGTGAATCAATGCAATCTGCATTGAACCTTGCTGATAAAGGAGTTAATATTTCCGCGAAAAACGGAATCATTAGACCGGAAGGTCTACGGATTCATGTACCCTATGTTGGTGAAGAAAAGAGTGATGATCATTCCATCAAATCTTCGGACACATCAACAGCTCTGACAGAAGATGCAGCTGCCAGCAGTTCTCTTGAACAAGTTATGCCAAATTGTCAAAGCTTCCCACCGCAAGTTCCGTACTACCCTGGTGCCCCTTGGCTTTTGCCGTGGAATCCATCTCAATGGAGCTCTCAAGTACAACCACCACCTGCTTTTTTCCCACAAGGATTTGCCATGCCACTCTATCCTCCACCGGCTTATTGGGGTTTTAGCATGCCCGGTGCGTGGAACAATCCATGGCTGGCACAACCTTCTTCACCAAATAGTGCAGCCGTTAACTCCGGTCCTAACTCGCCAACCTTAGGTAAGCATTCAAGGGAAGAAAGCATGCTCAAACCAACCGACTCAACAGGTTCTGACGAAGGAAACAATAAAGAAGAAAAGTCCCTTTGGGTTCCGAAAACGTTGAGGATTGATGACTTAGGAGAAGCAGAAAAAACCTCAATATTGACAACTCTCGGGATTAAAAATAGTAAGGCGGACGCGATTCGTGGGGGAGGACTTTTCAAAGCCTTTGGTTCAAAGAGCAATGAAAAAGATAGCGTGCAAAACTCACCTGCCATGCAGGCCAATCCAGCAGCAATGTCTAGGTCAATTAGCTTTCATGAGACCTCATAA
Protein sequence

>MS.gene20429.t1

MEAKDPGIKLFGKTIPVPEISAGSGDSTGAPASSSGDAVDDGIILNHGSSMDEEEREIDEDTMEDESTKCKKEKDEALTQSSEKVTDLDTNSRLVEESINPSTEDEQNTLKTSKIMEEHTENSHDKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKKCQRYWTAGGAMRNVPVGAGRRKNKNSASHFRQITVPETAVQNSQSDSPNGVHHPSLNCNGTVFTFRTDTPLCESMQSALNLADKGVNISAKNGIIRPEGLRIHVPYVGEEKSDDHSIKSSDTSTALTEDAAASSSLEQVMPNCQSFPPQVPYYPGAPWLLPWNPSQWSSQVQPPPAFFPQGFAMPLYPPPAYWGFSMPGAWNNPWLAQPSSPNSAAVNSGPNSPTLGKHSREESMLKPTDSTGSDEGNNKEEKSLWVPKTLRIDDLGEAEKTSILTTLGIKNSKADAIRGGGLFKAFGSKSNEKDSVQNSPAMQANPAAMSRSISFHETS