AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene20467

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene20467.t1 MTR_6g011450 66.168 535 81 12 15 474 304 813 0.0 622
MS.gene20467.t1 MTR_6g011450 66.168 535 81 12 15 474 166 675 0.0 620
MS.gene20467.t1 MTR_4g073340 60.302 529 101 11 6 474 15 494 0.0 530
MS.gene20467.t1 MTR_6g011470 75.000 260 14 2 216 474 1 210 1.68e-134 387
MS.gene20467.t1 MTR_1g061130 31.765 255 129 7 263 474 756 1008 4.67e-33 133
MS.gene20467.t1 MTR_1g061130 31.641 256 130 7 262 474 755 1008 4.79e-33 133
MS.gene20467.t1 MTR_7g103840 29.630 270 141 8 249 474 749 1013 3.90e-31 127
MS.gene20467.t1 MTR_7g103840 29.630 270 141 8 249 474 751 1015 4.31e-31 127
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene20467.t1 AT4G04885 63.801 221 58 2 253 473 591 789 2.07e-92 298
MS.gene20467.t1 AT1G66500 36.176 340 172 15 159 472 66 386 8.59e-50 175
MS.gene20467.t1 AT5G43620 36.170 282 132 10 215 472 123 380 1.36e-48 172
MS.gene20467.t1 AT2G36480 32.044 181 110 4 292 472 775 942 1.02e-21 99.4
MS.gene20467.t1 AT2G36480 32.044 181 110 4 292 472 775 942 1.02e-21 99.4

Find 138 sgRNAs with CRISPR-Local

Find 160 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGACGAACCTTGAGAATATT+TGG 0.171658 6.3:-6149151 None:intergenic
GTGACTGCTGTGCTCATCTT+TGG 0.248435 6.3:-6149245 None:intergenic
ATGCCTGTTGTTATTCCATT+AGG 0.284934 6.3:-6149562 None:intergenic
TAGGCATCAATTAGAGCTAT+TGG 0.294593 6.3:-6148227 None:intergenic
TGTCCACTGGTTGGCGAGTT+AGG 0.324685 6.3:-6148641 None:intergenic
AAGAGTTGTTTCCGATTCTT+TGG 0.325210 6.3:-6148778 None:intergenic
TCAGCGTCAAGGGTGTTTCC+TGG 0.325987 6.3:+6148374 MS.gene20467:CDS
TCAAAAGTTGCTGGCGAAAC+TGG 0.326718 6.3:-6148425 None:intergenic
CCCTGCGGAGGTAACTAAAT+TGG 0.332168 6.3:+6148955 MS.gene20467:CDS
GATTCGAATGGATTCCTAAC+AGG 0.333615 6.3:-6148506 None:intergenic
TCTAGGAAAATCACCATATA+AGG 0.334486 6.3:-6149191 None:intergenic
CTGCATTTAGCATGAATAAT+GGG 0.336904 6.3:-6149604 None:intergenic
TCTGCATTTAGCATGAATAA+TGG 0.356112 6.3:-6149605 None:intergenic
GCAGCGGGCTTCCCAGTTGC+TGG 0.370900 6.3:-6148329 None:intergenic
CGAAAAGACAAGAAACTTCA+TGG 0.371299 6.3:+6148258 MS.gene20467:CDS
GATTCGGATGAGGTAGAATC+TGG 0.392316 6.3:-6148835 None:intergenic
GGCTGTTGGCTTGACACATT+AGG 0.397611 6.3:-6148863 None:intergenic
ATGATTCCGACACCAGCAAC+TGG 0.398413 6.3:+6148317 MS.gene20467:CDS
GGATTCTTCGATGGATATAT+AGG 0.398722 6.3:-6148485 None:intergenic
GGCATAACAGGTCGTGCATT+TGG 0.398786 6.3:-6148740 None:intergenic
GGCATAGGAAGTGGCATAAC+AGG 0.399981 6.3:-6148752 None:intergenic
ACGTGGAGCATGCACATTTA+CGG 0.404948 6.3:-6148459 None:intergenic
CCGAAGAGGAGGAGTTCAAT+TGG 0.408130 6.3:+6148288 MS.gene20467:CDS
GTATACCTCAATGCACCTAA+TGG 0.412791 6.3:+6149547 MS.gene20467:CDS
TAACAGGTCGTGCATTTGGC+AGG 0.413669 6.3:-6148736 None:intergenic
CCATGTTCATGCACAGGAAT+AGG 0.417748 6.3:-6148575 None:intergenic
GCTTAAAGGTGCCGAGGCAT+TGG 0.418088 6.3:+6149354 MS.gene20467:CDS
TTGTTTCCGATTCTTTGGTC+TGG 0.419863 6.3:-6148773 None:intergenic
TCTGTAATCCGTGCCTTATA+TGG 0.421993 6.3:+6149178 MS.gene20467:CDS
ATTTGTTGGTGTTTCTCTCC+TGG 0.439045 6.3:-6148120 None:intergenic
AGTGAGACGATGTGGCTTAA+AGG 0.439793 6.3:+6149340 MS.gene20467:CDS
CCAATTGAACTCCTCCTCTT+CGG 0.441961 6.3:-6148288 None:intergenic
GCTCATCTTTGGATTTGAAT+CGG 0.447487 6.3:-6149234 None:intergenic
CTTAAAGGTGCCGAGGCATT+GGG 0.453885 6.3:+6149355 MS.gene20467:CDS
GCATTTGCTGCAATAGCAGC+GGG 0.454044 6.3:-6148344 None:intergenic
GCGAGTTAGGCAACTGATGC+AGG 0.458157 6.3:-6148628 None:intergenic
TTCCGACCTTTACCTCCAGC+TGG 0.468020 6.3:+6148800 MS.gene20467:CDS
GCATGGCCAGCTGGAGGTAA+AGG 0.470453 6.3:-6148806 None:intergenic
AAAACTGATGAAGAATTTGT+TGG 0.474608 6.3:-6148134 None:intergenic
AGAATATTTGGATCAAACTC+AGG 0.475308 6.3:-6149139 None:intergenic
CTTTGGTCTGGCATAGGAAG+TGG 0.476736 6.3:-6148761 None:intergenic
GCCAATTTAGTTACCTCCGC+AGG 0.478344 6.3:-6148956 None:intergenic
AAAGGAAGAAGATGCTTGCC+AGG 0.480340 6.3:+6148102 None:intergenic
TCACTGTAAAACACGTCAAA+AGG 0.480580 6.3:-6149493 None:intergenic
GGCTTCCCAGTTGCTGGTGT+CGG 0.485684 6.3:-6148323 None:intergenic
GCACCTAATGGAATAACAAC+AGG 0.488809 6.3:+6149559 MS.gene20467:CDS
GACACATTAGGACCAGGATT+CGG 0.491699 6.3:-6148851 None:intergenic
ATTCTACCTCATCCGAATCC+TGG 0.497538 6.3:+6148839 MS.gene20467:CDS
CCGATTCTTTGGTCTGGCAT+AGG 0.499828 6.3:-6148767 None:intergenic
TGGGGTAGAGCATGGCCAGC+TGG 0.501385 6.3:-6148815 None:intergenic
CGAAGAGGAGGAGTTCAATT+GGG 0.502140 6.3:+6148289 MS.gene20467:CDS
TTGGGAGTCAAGTCAGCTCC+AGG 0.502567 6.3:+6149373 MS.gene20467:CDS
GGCCTCGTTTCAAAAGTTGC+TGG 0.503897 6.3:-6148434 None:intergenic
TTAGCATTTATTGATTCGAA+TGG 0.504936 6.3:-6148518 None:intergenic
GGCATGGACAGGTCGCAGTT+AGG 0.505187 6.3:+6149580 MS.gene20467:CDS
CCACAAGTTGTGCACTGTCT+AGG 0.505428 6.3:-6149208 None:intergenic
ATCCATCGAAGAATCCTGTT+AGG 0.507185 6.3:+6148492 MS.gene20467:CDS
GGCCCAAGGTGTTATCTCAT+TGG 0.509000 6.3:+6148922 MS.gene20467:CDS
AAAGAAAGAAGACGAAGAGT+TGG 0.510498 6.3:+6149423 MS.gene20467:CDS
ATAGCTCTAATTGATGCCTA+TGG 0.514260 6.3:+6148230 MS.gene20467:CDS
ACAGTGATGAAACGGAGGAT+TGG 0.518817 6.3:+6149509 MS.gene20467:CDS
GCTGATTTAGTTACCTCCGC+AGG 0.522468 6.3:-6148989 None:intergenic
TGCATTTGCTGCAATAGCAG+CGG 0.523136 6.3:-6148345 None:intergenic
CAAAATACATGTGCATTATG+TGG 0.525790 6.3:+6149466 MS.gene20467:CDS
AGCACAGCAGTCACATGGAT+TGG 0.529243 6.3:+6149254 MS.gene20467:CDS
AGCCAATGAGATAACACCTT+GGG 0.530219 6.3:-6148924 None:intergenic
ATTGATTTAGTTACCTCCGC+AGG 0.532041 6.3:-6149022 None:intergenic
TGCAACTTCTTCAGCGTCAA+GGG 0.532463 6.3:+6148364 MS.gene20467:CDS
ACAGGTCGTGCATTTGGCAG+GGG 0.537469 6.3:-6148734 None:intergenic
CCTAGACAGTGCACAACTTG+TGG 0.539415 6.3:+6149208 MS.gene20467:CDS
GGCGGTGTTTGTCCACTGGT+TGG 0.543540 6.3:-6148650 None:intergenic
AACAGGTCGTGCATTTGGCA+GGG 0.545446 6.3:-6148735 None:intergenic
GAAAGGCGGTGTTTGTCCAC+TGG 0.548147 6.3:-6148654 None:intergenic
GAATAACAACAGGCATGGAC+AGG 0.551052 6.3:+6149569 MS.gene20467:CDS
AAATTAGAATATCCTACAGT+TGG 0.553132 6.3:-6148884 None:intergenic
AGCAGAAACCCTCTCGCAAG+TGG 0.553269 6.3:+6149311 MS.gene20467:CDS
CCTATGCCAGACCAAAGAAT+CGG 0.556854 6.3:+6148767 MS.gene20467:CDS
ATTAGTTCACTCGTGGCCCA+AGG 0.558294 6.3:+6148908 MS.gene20467:CDS
AATATCCTACAGTTGGCTGT+TGG 0.562656 6.3:-6148877 None:intergenic
CAGGTCGTGCATTTGGCAGG+GGG 0.562977 6.3:-6148733 None:intergenic
TTCCTAACAGGATTCTTCGA+TGG 0.563320 6.3:-6148494 None:intergenic
ATGCAACTTCTTCAGCGTCA+AGG 0.564208 6.3:+6148363 MS.gene20467:CDS
AAAGTGAATTGCGACGCTGC+TGG 0.570896 6.3:-6148698 None:intergenic
TGGCTTGACACATTAGGACC+AGG 0.576366 6.3:-6148857 None:intergenic
ATTCGGATGAGGTAGAATCT+GGG 0.576849 6.3:-6148834 None:intergenic
CTCACAAACCACTTGCGAGA+GGG 0.577171 6.3:-6149319 None:intergenic
TAATTTGATTAGTTCACTCG+TGG 0.577584 6.3:+6148901 MS.gene20467:CDS
TTAGGACCAGGATTCGGATG+AGG 0.577777 6.3:-6148845 None:intergenic
GTTTGATCCAAATATTCTCA+AGG 0.585822 6.3:+6149144 MS.gene20467:CDS
AGATGAGCACAGCAGTCACA+TGG 0.587427 6.3:+6149249 MS.gene20467:CDS
TCGACACCATGTTCATGCAC+AGG 0.588454 6.3:-6148581 None:intergenic
CTGATTTAGTTACCTCCGCA+GGG 0.590037 6.3:-6148988 None:intergenic
CCTATTCCTGTGCATGAACA+TGG 0.596190 6.3:+6148575 MS.gene20467:CDS
GAGTTCAGCTATCGCAGCAA+CGG 0.596554 6.3:+6148188 MS.gene20467:CDS
TTATTCCATTAGGTGCATTG+AGG 0.599937 6.3:-6149552 None:intergenic
GTAGAATCTGGGGTAGAGCA+TGG 0.600654 6.3:-6148823 None:intergenic
CATCTTTGGATTTGAATCGG+AGG 0.601375 6.3:-6149231 None:intergenic
TAATGGAATAACAACAGGCA+TGG 0.604751 6.3:+6149564 MS.gene20467:CDS
CCAATTTAGTTACCTCCGCA+GGG 0.606122 6.3:-6148955 None:intergenic
GAATATTTGGATCAAACTCA+GGG 0.606248 6.3:-6149138 None:intergenic
TTGCCTAACTCGCCAACCAG+TGG 0.608662 6.3:+6148638 MS.gene20467:CDS
AATACTACCACTGTGAGTCA+TGG 0.609522 6.3:+6148539 MS.gene20467:CDS
GACGCTGCTGGATTCTGAGA+TGG 0.609727 6.3:-6148686 None:intergenic
GGCTAATCAAAGCCCTGCGG+AGG 0.611174 6.3:+6148976 MS.gene20467:CDS
TTCTTCGATGGATATATAGG+AGG 0.611513 6.3:-6148482 None:intergenic
TTGATTTAGTTACCTCCGCA+GGG 0.612955 6.3:-6149021 None:intergenic
AAAGTTGCTGGCGAAACTGG+TGG 0.614136 6.3:-6148422 None:intergenic
GGCCAGCTGGAGGTAAAGGT+CGG 0.614768 6.3:-6148802 None:intergenic
GAAAATCACCATATAAGGCA+CGG 0.619885 6.3:-6149186 None:intergenic
TCAAGCCAACAGCCAACTGT+AGG 0.623071 6.3:+6148872 MS.gene20467:CDS
TGATTCCGACACCAGCAACT+GGG 0.627867 6.3:+6148318 MS.gene20467:CDS
AGGTCGTGCATTTGGCAGGG+GGG 0.628298 6.3:-6148732 None:intergenic
ATGGAAGAATACCGAAGAGG+AGG 0.631037 6.3:+6148277 MS.gene20467:CDS
GATGGATATATAGGAGGACG+TGG 0.633038 6.3:-6148476 None:intergenic
ACTCACAAACCACTTGCGAG+AGG 0.633226 6.3:-6149320 None:intergenic
TGCATTTAGCATGAATAATG+GGG 0.635399 6.3:-6149603 None:intergenic
TGACTTGACTCCCAATGCCT+CGG 0.643816 6.3:-6149365 None:intergenic
GGCTAATCAAGCCCCTGCGG+AGG 0.645043 6.3:+6148943 MS.gene20467:CDS
AGCTAATCAAGCCCCTGCGG+AGG 0.645043 6.3:+6149009 MS.gene20467:CDS
TTCGGATGAGGTAGAATCTG+GGG 0.651800 6.3:-6148833 None:intergenic
TCAGTATTAGAATTGAGACC+AGG 0.658819 6.3:-6148392 None:intergenic
TAGCCAATGAGATAACACCT+TGG 0.659744 6.3:-6148925 None:intergenic
GTTGGCAGTTCCTGCCGACG+AGG 0.661438 6.3:+6149441 MS.gene20467:CDS
ATCAGCTAATCAAGCCCCTG+CGG 0.669866 6.3:+6149006 MS.gene20467:CDS
GGAGCATGCACATTTACGGA+GGG 0.674855 6.3:-6148455 None:intergenic
TGATTTAGTTACCTCCGCAG+GGG 0.679811 6.3:-6149020 None:intergenic
TGGAGCATGCACATTTACGG+AGG 0.681918 6.3:-6148456 None:intergenic
GGTAGAGCATGGCCAGCTGG+AGG 0.682509 6.3:-6148812 None:intergenic
TTCATGGAAGAATACCGAAG+AGG 0.683939 6.3:+6148274 MS.gene20467:CDS
GAACATGGTGTCGAGAACAA+TGG 0.686510 6.3:+6148590 MS.gene20467:CDS
CAATTTAGTTACCTCCGCAG+GGG 0.688755 6.3:-6148954 None:intergenic
ATTGGCTAATCAAGCCCCTG+CGG 0.691379 6.3:+6148940 MS.gene20467:CDS
GATGTGGCTTAAAGGTGCCG+AGG 0.696373 6.3:+6149348 MS.gene20467:CDS
TTGCTGGCGAAACTGGTGGA+TGG 0.703445 6.3:-6148418 None:intergenic
GGTTTGTGAGTGAGACGATG+TGG 0.711325 6.3:+6149332 MS.gene20467:CDS
AATTAGACCATGACTCACAG+TGG 0.751691 6.3:-6148546 None:intergenic
ATTGGCTAATCAAAGCCCTG+CGG 0.760387 6.3:+6148973 MS.gene20467:CDS
TTTGCCAACCGAGACCACTG+AGG 0.774441 6.3:+6149399 MS.gene20467:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACATAATATAATAACAAAAT+TGG - chr6.3:6149101-6149120 None:intergenic 10.0%
!! TGTTATTATATTATGTTTGT+AGG + chr6.3:6149105-6149124 MS.gene20467:intron 15.0%
!! GTGATATAAAAATTGAACTA+AGG - chr6.3:6149048-6149067 None:intergenic 20.0%
!!! TTATGTTTGTAGGATTTTAT+TGG + chr6.3:6149115-6149134 MS.gene20467:intron 20.0%
! AAAACTGATGAAGAATTTGT+TGG - chr6.3:6148137-6148156 None:intergenic 25.0%
! AAATTAGAATATCCTACAGT+TGG - chr6.3:6148887-6148906 None:intergenic 25.0%
!!! TTAGCATTTATTGATTCGAA+TGG - chr6.3:6148521-6148540 None:intergenic 25.0%
AGAATATTTGGATCAAACTC+AGG - chr6.3:6149142-6149161 None:intergenic 30.0%
CAAAATACATGTGCATTATG+TGG + chr6.3:6149466-6149485 MS.gene20467:CDS 30.0%
CTGCATTTAGCATGAATAAT+GGG - chr6.3:6149607-6149626 None:intergenic 30.0%
GAATATTTGGATCAAACTCA+GGG - chr6.3:6149141-6149160 None:intergenic 30.0%
GGTACGCAATTAAACAATAA+TGG - chr6.3:6149080-6149099 None:intergenic 30.0%
GTTTGATCCAAATATTCTCA+AGG + chr6.3:6149144-6149163 MS.gene20467:CDS 30.0%
TCTAGGAAAATCACCATATA+AGG - chr6.3:6149194-6149213 None:intergenic 30.0%
TCTGCATTTAGCATGAATAA+TGG - chr6.3:6149608-6149627 None:intergenic 30.0%
TGCATTTAGCATGAATAATG+GGG - chr6.3:6149606-6149625 None:intergenic 30.0%
! CGCAATTAAACAATAATGGA+AGG - chr6.3:6149076-6149095 None:intergenic 30.0%
! TAATTTGATTAGTTCACTCG+TGG + chr6.3:6148901-6148920 MS.gene20467:CDS 30.0%
!! TCATCAAAACATCTTTTTCG+CGG - chr6.3:6148170-6148189 None:intergenic 30.0%
AAAGAAAGAAGACGAAGAGT+TGG + chr6.3:6149423-6149442 MS.gene20467:CDS 35.0%
CGAAAAGACAAGAAACTTCA+TGG + chr6.3:6148258-6148277 MS.gene20467:CDS 35.0%
GAAAATCACCATATAAGGCA+CGG - chr6.3:6149189-6149208 None:intergenic 35.0%
GCTCATCTTTGGATTTGAAT+CGG - chr6.3:6149237-6149256 None:intergenic 35.0%
GGATTCTTCGATGGATATAT+AGG - chr6.3:6148488-6148507 None:intergenic 35.0%
TAATGGAATAACAACAGGCA+TGG + chr6.3:6149564-6149583 MS.gene20467:CDS 35.0%
TAGGCATCAATTAGAGCTAT+TGG - chr6.3:6148230-6148249 None:intergenic 35.0%
TCACTGTAAAACACGTCAAA+AGG - chr6.3:6149496-6149515 None:intergenic 35.0%
TCAGTATTAGAATTGAGACC+AGG - chr6.3:6148395-6148414 None:intergenic 35.0%
TGACGAACCTTGAGAATATT+TGG - chr6.3:6149154-6149173 None:intergenic 35.0%
TGAGATGGAAAAAACTGGAA+AGG - chr6.3:6148674-6148693 None:intergenic 35.0%
TTATTCCATTAGGTGCATTG+AGG - chr6.3:6149555-6149574 None:intergenic 35.0%
TTCTTCGATGGATATATAGG+AGG - chr6.3:6148485-6148504 None:intergenic 35.0%
! AAGAGTTGTTTCCGATTCTT+TGG - chr6.3:6148781-6148800 None:intergenic 35.0%
! ATGCCTGTTGTTATTCCATT+AGG - chr6.3:6149565-6149584 None:intergenic 35.0%
! CGTGTTTTACAGTGATGAAA+CGG + chr6.3:6149501-6149520 MS.gene20467:CDS 35.0%
! GGGTTTCTGCTTATTGTTTT+TGG - chr6.3:6149302-6149321 None:intergenic 35.0%
!! ATAGCTCTAATTGATGCCTA+TGG + chr6.3:6148230-6148249 MS.gene20467:CDS 35.0%
!! GATTCTGAGATGGAAAAAAC+TGG - chr6.3:6148679-6148698 None:intergenic 35.0%
!!! ACATGTATTTTGATCCTCGT+CGG - chr6.3:6149458-6149477 None:intergenic 35.0%
AATACTACCACTGTGAGTCA+TGG + chr6.3:6148539-6148558 MS.gene20467:CDS 40.0%
AATATCCTACAGTTGGCTGT+TGG - chr6.3:6148880-6148899 None:intergenic 40.0%
AATTAGACCATGACTCACAG+TGG - chr6.3:6148549-6148568 None:intergenic 40.0%
AGCCAATGAGATAACACCTT+GGG - chr6.3:6148927-6148946 None:intergenic 40.0%
ATCCATCGAAGAATCCTGTT+AGG + chr6.3:6148492-6148511 MS.gene20467:CDS 40.0%
ATTCGGATGAGGTAGAATCT+GGG - chr6.3:6148837-6148856 None:intergenic 40.0%
CATCTTTGGATTTGAATCGG+AGG - chr6.3:6149234-6149253 None:intergenic 40.0%
GATGGAAAAAACTGGAAAGG+CGG - chr6.3:6148671-6148690 None:intergenic 40.0%
GCACCTAATGGAATAACAAC+AGG + chr6.3:6149559-6149578 MS.gene20467:CDS 40.0%
GTATACCTCAATGCACCTAA+TGG + chr6.3:6149547-6149566 MS.gene20467:CDS 40.0%
TAGCCAATGAGATAACACCT+TGG - chr6.3:6148928-6148947 None:intergenic 40.0%
TCTGTAATCCGTGCCTTATA+TGG + chr6.3:6149178-6149197 MS.gene20467:CDS 40.0%
TTCATGGAAGAATACCGAAG+AGG + chr6.3:6148274-6148293 MS.gene20467:CDS 40.0%
TTCCTAACAGGATTCTTCGA+TGG - chr6.3:6148497-6148516 None:intergenic 40.0%
TTGATTTAGTTACCTCCGCA+GGG - chr6.3:6149024-6149043 None:intergenic 40.0%
TTGTTTCCGATTCTTTGGTC+TGG - chr6.3:6148776-6148795 None:intergenic 40.0%
! ATTGATTTAGTTACCTCCGC+AGG - chr6.3:6149025-6149044 None:intergenic 40.0%
! ATTTGTTGGTGTTTCTCTCC+TGG - chr6.3:6148123-6148142 None:intergenic 40.0%
! GATTCGAATGGATTCCTAAC+AGG - chr6.3:6148509-6148528 None:intergenic 40.0%
! GTCTTCTTTCTTTTCCTCAG+TGG - chr6.3:6149416-6149435 None:intergenic 40.0%
! GTTTTACAGTGATGAAACGG+AGG + chr6.3:6149504-6149523 MS.gene20467:CDS 40.0%
! TTGTCTTTTCGCACTACCAT+AGG - chr6.3:6148249-6148268 None:intergenic 40.0%
! TTTCTTTTCCTCAGTGGTCT+CGG - chr6.3:6149410-6149429 None:intergenic 40.0%
!! AGAGCTATTGGATTTTGACG+AGG - chr6.3:6148218-6148237 None:intergenic 40.0%
ACAGTGATGAAACGGAGGAT+TGG + chr6.3:6149509-6149528 MS.gene20467:CDS 45.0%
ACGTGGAGCATGCACATTTA+CGG - chr6.3:6148462-6148481 None:intergenic 45.0%
AGTGAGACGATGTGGCTTAA+AGG + chr6.3:6149340-6149359 MS.gene20467:CDS 45.0%
ATGCAACTTCTTCAGCGTCA+AGG + chr6.3:6148363-6148382 MS.gene20467:CDS 45.0%
ATGGAAGAATACCGAAGAGG+AGG + chr6.3:6148277-6148296 MS.gene20467:CDS 45.0%
ATTCTACCTCATCCGAATCC+TGG + chr6.3:6148839-6148858 MS.gene20467:CDS 45.0%
ATTGGCTAATCAAAGCCCTG+CGG + chr6.3:6148973-6148992 MS.gene20467:CDS 45.0%
CAATTTAGTTACCTCCGCAG+GGG - chr6.3:6148957-6148976 None:intergenic 45.0%
CCAATTGAACTCCTCCTCTT+CGG - chr6.3:6148291-6148310 None:intergenic 45.0%
CCAATTTAGTTACCTCCGCA+GGG - chr6.3:6148958-6148977 None:intergenic 45.0%
CCATGTTCATGCACAGGAAT+AGG - chr6.3:6148578-6148597 None:intergenic 45.0%
CCTATGCCAGACCAAAGAAT+CGG + chr6.3:6148767-6148786 MS.gene20467:CDS 45.0%
CCTATTCCTGTGCATGAACA+TGG + chr6.3:6148575-6148594 MS.gene20467:CDS 45.0%
CGAAGAGGAGGAGTTCAATT+GGG + chr6.3:6148289-6148308 MS.gene20467:CDS 45.0%
CTGATTTAGTTACCTCCGCA+GGG - chr6.3:6148991-6149010 None:intergenic 45.0%
GAATAACAACAGGCATGGAC+AGG + chr6.3:6149569-6149588 MS.gene20467:CDS 45.0%
GACACATTAGGACCAGGATT+CGG - chr6.3:6148854-6148873 None:intergenic 45.0%
GATGGATATATAGGAGGACG+TGG - chr6.3:6148479-6148498 None:intergenic 45.0%
GATTCGGATGAGGTAGAATC+TGG - chr6.3:6148838-6148857 None:intergenic 45.0%
TCAAAAGTTGCTGGCGAAAC+TGG - chr6.3:6148428-6148447 None:intergenic 45.0%
TGATTTAGTTACCTCCGCAG+GGG - chr6.3:6148990-6149009 None:intergenic 45.0%
TGCAACTTCTTCAGCGTCAA+GGG + chr6.3:6148364-6148383 MS.gene20467:CDS 45.0%
TTCGGATGAGGTAGAATCTG+GGG - chr6.3:6148836-6148855 None:intergenic 45.0%
! GAACATGGTGTCGAGAACAA+TGG + chr6.3:6148590-6148609 MS.gene20467:CDS 45.0%
! TGCATTTGCTGCAATAGCAG+CGG - chr6.3:6148348-6148367 None:intergenic 45.0%
AAAGTGAATTGCGACGCTGC+TGG - chr6.3:6148701-6148720 None:intergenic 50.0%
AAAGTTGCTGGCGAAACTGG+TGG - chr6.3:6148425-6148444 None:intergenic 50.0%
AACAGGTCGTGCATTTGGCA+GGG - chr6.3:6148738-6148757 None:intergenic 50.0%
ACTCACAAACCACTTGCGAG+AGG - chr6.3:6149323-6149342 None:intergenic 50.0%
AGATGAGCACAGCAGTCACA+TGG + chr6.3:6149249-6149268 MS.gene20467:CDS 50.0%
AGCACAGCAGTCACATGGAT+TGG + chr6.3:6149254-6149273 MS.gene20467:CDS 50.0%
ATCAGCTAATCAAGCCCCTG+CGG + chr6.3:6149006-6149025 MS.gene20467:CDS 50.0%
ATGATTCCGACACCAGCAAC+TGG + chr6.3:6148317-6148336 MS.gene20467:CDS 50.0%
ATTAGTTCACTCGTGGCCCA+AGG + chr6.3:6148908-6148927 MS.gene20467:CDS 50.0%
ATTGGCTAATCAAGCCCCTG+CGG + chr6.3:6148940-6148959 MS.gene20467:CDS 50.0%
CCACAAGTTGTGCACTGTCT+AGG - chr6.3:6149211-6149230 None:intergenic 50.0%
CCCTGCGGAGGTAACTAAAT+TGG + chr6.3:6148955-6148974 MS.gene20467:CDS 50.0%
CCGAAGAGGAGGAGTTCAAT+TGG + chr6.3:6148288-6148307 MS.gene20467:CDS 50.0%
CCGATTCTTTGGTCTGGCAT+AGG - chr6.3:6148770-6148789 None:intergenic 50.0%
CCTAGACAGTGCACAACTTG+TGG + chr6.3:6149208-6149227 MS.gene20467:CDS 50.0%
CTCACAAACCACTTGCGAGA+GGG - chr6.3:6149322-6149341 None:intergenic 50.0%
CTTTGGTCTGGCATAGGAAG+TGG - chr6.3:6148764-6148783 None:intergenic 50.0%
GAGTTCAGCTATCGCAGCAA+CGG + chr6.3:6148188-6148207 MS.gene20467:CDS 50.0%
GCCAATTTAGTTACCTCCGC+AGG - chr6.3:6148959-6148978 None:intergenic 50.0%
GGAGCATGCACATTTACGGA+GGG - chr6.3:6148458-6148477 None:intergenic 50.0%
GGCATAACAGGTCGTGCATT+TGG - chr6.3:6148743-6148762 None:intergenic 50.0%
GGCATAGGAAGTGGCATAAC+AGG - chr6.3:6148755-6148774 None:intergenic 50.0%
GGCCTCGTTTCAAAAGTTGC+TGG - chr6.3:6148437-6148456 None:intergenic 50.0%
GGTTTGTGAGTGAGACGATG+TGG + chr6.3:6149332-6149351 MS.gene20467:CDS 50.0%
GTCTCGGTTGGCAAAAAACC+TGG - chr6.3:6149394-6149413 None:intergenic 50.0%
GTGACTGCTGTGCTCATCTT+TGG - chr6.3:6149248-6149267 None:intergenic 50.0%
TAACAGGTCGTGCATTTGGC+AGG - chr6.3:6148739-6148758 None:intergenic 50.0%
TCAAGCCAACAGCCAACTGT+AGG + chr6.3:6148872-6148891 MS.gene20467:CDS 50.0%
TCGACACCATGTTCATGCAC+AGG - chr6.3:6148584-6148603 None:intergenic 50.0%
TGACTTGACTCCCAATGCCT+CGG - chr6.3:6149368-6149387 None:intergenic 50.0%
TGATTCCGACACCAGCAACT+GGG + chr6.3:6148318-6148337 MS.gene20467:CDS 50.0%
TGGAGCATGCACATTTACGG+AGG - chr6.3:6148459-6148478 None:intergenic 50.0%
TGGCTTGACACATTAGGACC+AGG - chr6.3:6148860-6148879 None:intergenic 50.0%
TTAGGACCAGGATTCGGATG+AGG - chr6.3:6148848-6148867 None:intergenic 50.0%
! GCATTTGCTGCAATAGCAGC+GGG - chr6.3:6148347-6148366 None:intergenic 50.0%
! GCTGATTTAGTTACCTCCGC+AGG - chr6.3:6148992-6149011 None:intergenic 50.0%
! GGCCCAAGGTGTTATCTCAT+TGG + chr6.3:6148922-6148941 MS.gene20467:CDS 50.0%
! GTAGAATCTGGGGTAGAGCA+TGG - chr6.3:6148826-6148845 None:intergenic 50.0%
! TTTTCCTCAGTGGTCTCGGT+TGG - chr6.3:6149406-6149425 None:intergenic 50.0%
!! CTTAAAGGTGCCGAGGCATT+GGG + chr6.3:6149355-6149374 MS.gene20467:CDS 50.0%
!! GGCTGTTGGCTTGACACATT+AGG - chr6.3:6148866-6148885 None:intergenic 50.0%
!!! CGCCAGCAACTTTTGAAACG+AGG + chr6.3:6148432-6148451 MS.gene20467:CDS 50.0%
!!! GTATTTTGATCCTCGTCGGC+AGG - chr6.3:6149454-6149473 None:intergenic 50.0%
ACAGGTCGTGCATTTGGCAG+GGG - chr6.3:6148737-6148756 None:intergenic 55.0%
AGCAGAAACCCTCTCGCAAG+TGG + chr6.3:6149311-6149330 MS.gene20467:CDS 55.0%
GAAAGGCGGTGTTTGTCCAC+TGG - chr6.3:6148657-6148676 None:intergenic 55.0%
GCGAGTTAGGCAACTGATGC+AGG - chr6.3:6148631-6148650 None:intergenic 55.0%
TTCCGACCTTTACCTCCAGC+TGG + chr6.3:6148800-6148819 MS.gene20467:CDS 55.0%
TTGCCTAACTCGCCAACCAG+TGG + chr6.3:6148638-6148657 MS.gene20467:CDS 55.0%
TTGCTGGCGAAACTGGTGGA+TGG - chr6.3:6148421-6148440 None:intergenic 55.0%
TTGGGAGTCAAGTCAGCTCC+AGG + chr6.3:6149373-6149392 MS.gene20467:CDS 55.0%
TTTGCCAACCGAGACCACTG+AGG + chr6.3:6149399-6149418 MS.gene20467:CDS 55.0%
! GACGCTGCTGGATTCTGAGA+TGG - chr6.3:6148689-6148708 None:intergenic 55.0%
! TGTCCACTGGTTGGCGAGTT+AGG - chr6.3:6148644-6148663 None:intergenic 55.0%
!! GATGTGGCTTAAAGGTGCCG+AGG + chr6.3:6149348-6149367 MS.gene20467:CDS 55.0%
!! GCTTAAAGGTGCCGAGGCAT+TGG + chr6.3:6149354-6149373 MS.gene20467:CDS 55.0%
!! TCAGCGTCAAGGGTGTTTCC+TGG + chr6.3:6148374-6148393 MS.gene20467:CDS 55.0%
AGCTAATCAAGCCCCTGCGG+AGG + chr6.3:6149009-6149028 MS.gene20467:CDS 60.0%
AGGTCGTGCATTTGGCAGGG+GGG - chr6.3:6148735-6148754 None:intergenic 60.0%
CAGGTCGTGCATTTGGCAGG+GGG - chr6.3:6148736-6148755 None:intergenic 60.0%
GCATGGCCAGCTGGAGGTAA+AGG - chr6.3:6148809-6148828 None:intergenic 60.0%
GGCATGGACAGGTCGCAGTT+AGG + chr6.3:6149580-6149599 MS.gene20467:CDS 60.0%
GGCCAGCTGGAGGTAAAGGT+CGG - chr6.3:6148805-6148824 None:intergenic 60.0%
GGCGGTGTTTGTCCACTGGT+TGG - chr6.3:6148653-6148672 None:intergenic 60.0%
GGCTAATCAAAGCCCTGCGG+AGG + chr6.3:6148976-6148995 MS.gene20467:CDS 60.0%
GGCTTCCCAGTTGCTGGTGT+CGG - chr6.3:6148326-6148345 None:intergenic 60.0%
! TTTGGCAGGGGGGCATGTCT+TGG - chr6.3:6148725-6148744 None:intergenic 60.0%
GGCTAATCAAGCCCCTGCGG+AGG + chr6.3:6148943-6148962 MS.gene20467:CDS 65.0%
GGTAGAGCATGGCCAGCTGG+AGG - chr6.3:6148815-6148834 None:intergenic 65.0%
GTTGGCAGTTCCTGCCGACG+AGG + chr6.3:6149441-6149460 MS.gene20467:CDS 65.0%
TGGGGTAGAGCATGGCCAGC+TGG - chr6.3:6148818-6148837 None:intergenic 65.0%
! GCAGCGGGCTTCCCAGTTGC+TGG - chr6.3:6148332-6148351 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr6.3 gene 6148113 6149633 6148113 ID=MS.gene20467
chr6.3 mRNA 6148113 6149633 6148113 ID=MS.gene20467.t1;Parent=MS.gene20467
chr6.3 exon 6148113 6149030 6148113 ID=MS.gene20467.t1.exon1;Parent=MS.gene20467.t1
chr6.3 CDS 6148113 6149030 6148113 ID=cds.MS.gene20467.t1;Parent=MS.gene20467.t1
chr6.3 exon 6149127 6149633 6149127 ID=MS.gene20467.t1.exon2;Parent=MS.gene20467.t1
chr6.3 CDS 6149127 6149633 6149127 ID=cds.MS.gene20467.t1;Parent=MS.gene20467.t1
Gene Sequence

>MS.gene20467

ATGCTTGCCAGGAGAGAAACACCAACAAATTCTTCATCAGTTTTCTCACACTTTCCGCGAAAAAGATGTTTTGATGAGTTCAGCTATCGCAGCAACGGACAACCTCGTCAAAATCCAATAGCTCTAATTGATGCCTATGGTAGTGCGAAAAGACAAGAAACTTCATGGAAGAATACCGAAGAGGAGGAGTTCAATTGGGAAGATATGATTCCGACACCAGCAACTGGGAAGCCCGCTGCTATTGCAGCAAATGCAACTTCTTCAGCGTCAAGGGTGTTTCCTGGTCTCAATTCTAATACTGAGTACCATCCACCAGTTTCGCCAGCAACTTTTGAAACGAGGCCCTCCGTAAATGTGCATGCTCCACGTCCTCCTATATATCCATCGAAGAATCCTGTTAGGAATCCATTCGAATCAATAAATGCTAATACTACCACTGTGAGTCATGGTCTAATTAATAGACCTATTCCTGTGCATGAACATGGTGTCGAGAACAATGGTATCAGTAAAAGAAACCTGCATCAGTTGCCTAACTCGCCAACCAGTGGACAAACACCGCCTTTCCAGTTTTTTCCATCTCAGAATCCAGCAGCGTCGCAATTCACTTTGCCAAGACATGCCCCCCTGCCAAATGCACGACCTGTTATGCCACTTCCTATGCCAGACCAAAGAATCGGAAACAACTCTTTCCGACCTTTACCTCCAGCTGGCCATGCTCTACCCCAGATTCTACCTCATCCGAATCCTGGTCCTAATGTGTCAAGCCAACAGCCAACTGTAGGATATTCTAATTTGATTAGTTCACTCGTGGCCCAAGGTGTTATCTCATTGGCTAATCAAGCCCCTGCGGAGGTAACTAAATTGGCTAATCAAAGCCCTGCGGAGGTAACTAAATCAGCTAATCAAGCCCCTGCGGAGGTAACTAAATCAATCCTTAGTTCAATTTTTATATCACATTTTCCTTCCATTATTGTTTAATTGCGTACCAATTTTGTTATTATATTATGTTTGTAGGATTTTATTGGCCCTGAGTTTGATCCAAATATTCTCAAGGTTCGTCATGAATCTGTAATCCGTGCCTTATATGGTGATTTTCCTAGACAGTGCACAACTTGTGGCCTCCGATTCAAATCCAAAGATGAGCACAGCAGTCACATGGATTGGCATGTAACTAAGAATCGTATGTCCAAAAACAATAAGCAGAAACCCTCTCGCAAGTGGTTTGTGAGTGAGACGATGTGGCTTAAAGGTGCCGAGGCATTGGGAGTCAAGTCAGCTCCAGGTTTTTTGCCAACCGAGACCACTGAGGAAAAGAAAGAAGACGAAGAGTTGGCAGTTCCTGCCGACGAGGATCAAAATACATGTGCATTATGTGGAGAACCTTTTGACGTGTTTTACAGTGATGAAACGGAGGATTGGATGAGTAGAGAAGCTGTATACCTCAATGCACCTAATGGAATAACAACAGGCATGGACAGGTCGCAGTTAGGCCCCATTATTCATGCTAAATGCAGATCTTAA
Protein sequence

>MS.gene20467.t1

MLARRETPTNSSSVFSHFPRKRCFDEFSYRSNGQPRQNPIALIDAYGSAKRQETSWKNTEEEEFNWEDMIPTPATGKPAAIAANATSSASRVFPGLNSNTEYHPPVSPATFETRPSVNVHAPRPPIYPSKNPVRNPFESINANTTTVSHGLINRPIPVHEHGVENNGISKRNLHQLPNSPTSGQTPPFQFFPSQNPAASQFTLPRHAPLPNARPVMPLPMPDQRIGNNSFRPLPPAGHALPQILPHPNPGPNVSSQQPTVGYSNLISSLVAQGVISLANQAPAEVTKLANQSPAEVTKSANQAPAEDFIGPEFDPNILKVRHESVIRALYGDFPRQCTTCGLRFKSKDEHSSHMDWHVTKNRMSKNNKQKPSRKWFVSETMWLKGAEALGVKSAPGFLPTETTEEKKEDEELAVPADEDQNTCALCGEPFDVFYSDETEDWMSREAVYLNAPNGITTGMDRSQLGPIIHAKCRS