AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene20468

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene20468.t1 MTR_6g011450 66.355 535 80 12 15 474 304 813 0.0 630
MS.gene20468.t1 MTR_6g011450 66.355 535 80 12 15 474 166 675 0.0 628
MS.gene20468.t1 MTR_4g073340 59.924 529 103 11 6 474 15 494 0.0 535
MS.gene20468.t1 MTR_6g011470 72.692 260 20 2 216 474 1 210 7.97e-131 377
MS.gene20468.t1 MTR_1g061130 32.812 256 127 6 262 474 755 1008 2.07e-37 146
MS.gene20468.t1 MTR_1g061130 32.812 256 127 6 262 474 755 1008 2.33e-37 146
MS.gene20468.t1 MTR_7g103840 30.337 267 143 6 249 474 751 1015 1.62e-34 138
MS.gene20468.t1 MTR_7g103840 30.337 267 143 6 249 474 749 1013 1.79e-34 137
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene20468.t1 AT4G04885 63.801 221 58 2 253 473 591 789 4.16e-95 305
MS.gene20468.t1 AT1G66500 36.176 340 172 15 159 472 66 386 9.22e-51 178
MS.gene20468.t1 AT5G43620 36.170 282 132 10 215 472 123 380 1.67e-49 174
MS.gene20468.t1 AT2G36480 33.333 180 107 4 293 472 776 942 1.13e-25 111
MS.gene20468.t1 AT2G36480 33.333 180 107 4 293 472 776 942 1.13e-25 111

Find 139 sgRNAs with CRISPR-Local

Find 157 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGACGAACCTTGAGAATATT+TGG 0.171658 6.3:-6125191 None:intergenic
CACATAATGCACATGTATTT+TGG 0.204278 6.3:-6125505 None:intergenic
GTGACTGCTGTGCTCATCTT+TGG 0.248435 6.3:-6125285 None:intergenic
TAGGCATCAATTAGAGCTAT+TGG 0.294593 6.3:-6124267 None:intergenic
ATGCCTGTTGTTATTCCATT+AGG 0.320007 6.3:-6125602 None:intergenic
TGTCCACTGGTTGGCGAGTT+AGG 0.324685 6.3:-6124681 None:intergenic
AAGAGTTGTTTCCGATTCTT+TGG 0.325210 6.3:-6124818 None:intergenic
TCAGCGTCAAGGGTGTTTCC+TGG 0.325987 6.3:+6124414 MS.gene20468:CDS
TCAAAAGTTGCTGGCGAAAC+TGG 0.326718 6.3:-6124465 None:intergenic
TCTGTAATCCGTGGCTTATA+TGG 0.327106 6.3:+6125218 MS.gene20468:CDS
GATTCGAATGGATTCCTAAC+AGG 0.333615 6.3:-6124546 None:intergenic
AGATGAAGAGTTGGCTGTTC+CGG 0.339955 6.3:+6125472 MS.gene20468:CDS
TTATTCCATTAGGCGCATTA+AGG 0.358655 6.3:-6125592 None:intergenic
CGAAAAGACAAGAAACTTCA+TGG 0.371299 6.3:+6124298 MS.gene20468:CDS
GATTCGGATGAGGTAGAATC+TGG 0.392316 6.3:-6124875 None:intergenic
CTGCATTTAGCATGAATAAC+GGG 0.394865 6.3:-6125644 None:intergenic
GGCTGTTGGCTTGACACATT+AGG 0.397611 6.3:-6124903 None:intergenic
ATGATTCCGACACCAGCAAC+TGG 0.398413 6.3:+6124357 MS.gene20468:CDS
GGATTCTTCGATGGATATAT+AGG 0.398722 6.3:-6124525 None:intergenic
GGCATAACAGGTCGTGCATT+TGG 0.398786 6.3:-6124780 None:intergenic
GGCATAGGAAGTGGCATAAC+AGG 0.399981 6.3:-6124792 None:intergenic
AAAGAAAGAAGATGAAGAGT+TGG 0.403383 6.3:+6125463 MS.gene20468:CDS
ACGTGGAGCATGCACATTTA+CGG 0.404948 6.3:-6124499 None:intergenic
GTAGCGGGCTTCCCAGTTGC+TGG 0.407709 6.3:-6124369 None:intergenic
CCGAAGAGGAGGAGTTCAAT+TGG 0.408130 6.3:+6124328 MS.gene20468:CDS
TAACAGGTCGTGCATTTGGC+AGG 0.413669 6.3:-6124776 None:intergenic
CCATGTTCATGCACAGGAAT+AGG 0.417748 6.3:-6124615 None:intergenic
GCTTAAAGGTGCCGAGGCAT+TGG 0.418088 6.3:+6125394 MS.gene20468:CDS
TTGTTTCCGATTCTTTGGTC+TGG 0.419863 6.3:-6124813 None:intergenic
GGCATAGACAGGTCGCAGTT+TGG 0.438282 6.3:+6125620 MS.gene20468:CDS
ATTTGTTGGTGTTTCTCTCC+TGG 0.439045 6.3:-6124160 None:intergenic
AGTGAGACGATGTGGCTTAA+AGG 0.439793 6.3:+6125380 MS.gene20468:CDS
CCCTGCGGAGGTAACTAAAT+CGG 0.441235 6.3:+6125028 MS.gene20468:CDS
GTATACCTTAATGCGCCTAA+TGG 0.441302 6.3:+6125587 MS.gene20468:CDS
CCAATTGAACTCCTCCTCTT+CGG 0.441961 6.3:-6124328 None:intergenic
GCTCATCTTTGGATTTGAAT+CGG 0.447487 6.3:-6125274 None:intergenic
CTTAAAGGTGCCGAGGCATT+GGG 0.453885 6.3:+6125395 MS.gene20468:CDS
GCGAGTTAGGCAACTGATGC+AGG 0.458157 6.3:-6124668 None:intergenic
TTCCGACCTTTACCTCCAGC+TGG 0.468020 6.3:+6124840 MS.gene20468:CDS
GCATGGCCAGCTGGAGGTAA+AGG 0.470453 6.3:-6124846 None:intergenic
GCATTTGCTGCAATAGTAGC+GGG 0.472527 6.3:-6124384 None:intergenic
AAAACTGATGAAGAATTTGT+TGG 0.474608 6.3:-6124174 None:intergenic
CCCTGCGGAGGTAACTAAAT+CGG 0.476425 6.3:+6124995 MS.gene20468:CDS
CTTTGGTCTGGCATAGGAAG+TGG 0.476736 6.3:-6124801 None:intergenic
AAAGGAAGAAGATGCTTGCC+AGG 0.480340 6.3:+6124142 None:intergenic
GGCTTCCCAGTTGCTGGTGT+CGG 0.485684 6.3:-6124363 None:intergenic
GCCGATTTAGTTACCTCCGC+AGG 0.485908 6.3:-6125029 None:intergenic
GACACATTAGGACCAGGATT+CGG 0.491699 6.3:-6124891 None:intergenic
GCGCCTAATGGAATAACAAC+AGG 0.497466 6.3:+6125599 MS.gene20468:CDS
ATTCTACCTCATCCGAATCC+TGG 0.497538 6.3:+6124879 MS.gene20468:CDS
CCGATTCTTTGGTCTGGCAT+AGG 0.499828 6.3:-6124807 None:intergenic
TGGGGTAGAGCATGGCCAGC+TGG 0.501385 6.3:-6124855 None:intergenic
CGAAGAGGAGGAGTTCAATT+GGG 0.502140 6.3:+6124329 MS.gene20468:CDS
TTGGGAGTCAAGTCAGCTCC+AGG 0.502567 6.3:+6125413 MS.gene20468:CDS
ACGGAGGAGTGGATGTATAG+AGG 0.502902 6.3:+6125560 MS.gene20468:CDS
GGCCTCGTTTCAAAAGTTGC+TGG 0.503897 6.3:-6124474 None:intergenic
AGCTAATGAGATAACACCTT+GGG 0.504555 6.3:-6124964 None:intergenic
TTAGCATTTATTGATTCGAA+TGG 0.504936 6.3:-6124558 None:intergenic
CCACAAGTTGTGCACTGTCT+AGG 0.505428 6.3:-6125248 None:intergenic
TCACTGTAAAACTCCTCAAA+AGG 0.506831 6.3:-6125533 None:intergenic
ATCCATCGAAGAATCCTGTT+AGG 0.507185 6.3:+6124532 MS.gene20468:CDS
GCCGATTTAGTTACCTCCGC+AGG 0.507279 6.3:-6124996 None:intergenic
ATAGCTCTAATTGATGCCTA+TGG 0.514260 6.3:+6124270 MS.gene20468:CDS
AGCACAGCAGTCACATGGAT+TGG 0.529243 6.3:+6125294 MS.gene20468:CDS
CAAAATACATGTGCATTATG+TGG 0.529245 6.3:+6125506 MS.gene20468:CDS
ATTGATTTAGTTACCTCCGC+AGG 0.532041 6.3:-6125062 None:intergenic
TGCAACTTCTTCAGCGTCAA+GGG 0.532463 6.3:+6124404 MS.gene20468:CDS
ACAGGTCGTGCATTTGGCAG+GGG 0.537469 6.3:-6124774 None:intergenic
CCTAGACAGTGCACAACTTG+TGG 0.539415 6.3:+6125248 MS.gene20468:CDS
GGCGGTGTTTGTCCACTGGT+TGG 0.543540 6.3:-6124690 None:intergenic
AACAGGTCGTGCATTTGGCA+GGG 0.545446 6.3:-6124775 None:intergenic
GAAAGGCGGTGTTTGTCCAC+TGG 0.548147 6.3:-6124694 None:intergenic
GAATAACAACAGGCATAGAC+AGG 0.548628 6.3:+6125609 MS.gene20468:CDS
AAATTAGAATATCCGACAGT+TGG 0.551878 6.3:-6124924 None:intergenic
AGCAGAAACCCTCTCGCAAG+TGG 0.553269 6.3:+6125351 MS.gene20468:CDS
AATATCCGACAGTTGGCTGT+TGG 0.554695 6.3:-6124917 None:intergenic
TCTGCATTTAGCATGAATAA+CGG 0.555648 6.3:-6125645 None:intergenic
CCTATGCCAGACCAAAGAAT+CGG 0.556854 6.3:+6124807 MS.gene20468:CDS
ATTAGTTCACTCGTGGCCCA+AGG 0.558294 6.3:+6124948 MS.gene20468:CDS
CAGGTCGTGCATTTGGCAGG+GGG 0.562977 6.3:-6124773 None:intergenic
TTCCTAACAGGATTCTTCGA+TGG 0.563320 6.3:-6124534 None:intergenic
ATGCAACTTCTTCAGCGTCA+AGG 0.564208 6.3:+6124403 MS.gene20468:CDS
CCGATTTAGTTACCTCCGCA+GGG 0.567759 6.3:-6125028 None:intergenic
AAAGTGAATTGCGACGCTGC+TGG 0.570896 6.3:-6124738 None:intergenic
TGCATTTGCTGCAATAGTAG+CGG 0.574043 6.3:-6124385 None:intergenic
TGGCTTGACACATTAGGACC+AGG 0.576366 6.3:-6124897 None:intergenic
ATTCGGATGAGGTAGAATCT+GGG 0.576849 6.3:-6124874 None:intergenic
CTCACAAACCACTTGCGAGA+GGG 0.577171 6.3:-6125359 None:intergenic
TAATTTGATTAGTTCACTCG+TGG 0.577584 6.3:+6124941 MS.gene20468:CDS
TTAGGACCAGGATTCGGATG+AGG 0.577777 6.3:-6124885 None:intergenic
GAATATTTGGATCAAACTCA+AGG 0.580223 6.3:-6125178 None:intergenic
AGATGAGCACAGCAGTCACA+TGG 0.587427 6.3:+6125289 MS.gene20468:CDS
GTTTGATCCAAATATTCTCA+AGG 0.588305 6.3:+6125184 MS.gene20468:CDS
TCGACACCATGTTCATGCAC+AGG 0.588454 6.3:-6124621 None:intergenic
CCGATTTAGTTACCTCCGCA+GGG 0.591874 6.3:-6124995 None:intergenic
CCTATTCCTGTGCATGAACA+TGG 0.596190 6.3:+6124615 MS.gene20468:CDS
GAGTTCAGCTATCGCAGCAA+CGG 0.596554 6.3:+6124228 MS.gene20468:CDS
GTAGAATCTGGGGTAGAGCA+TGG 0.600654 6.3:-6124863 None:intergenic
CATCTTTGGATTTGAATCGG+AGG 0.601375 6.3:-6125271 None:intergenic
TTGCCTAACTCGCCAACCAG+TGG 0.608662 6.3:+6124678 MS.gene20468:CDS
AATACTACCACTGTGAGTCA+TGG 0.609522 6.3:+6124579 MS.gene20468:CDS
GACGCTGCTGGATTCTGAGA+TGG 0.609727 6.3:-6124726 None:intergenic
TTCTTCGATGGATATATAGG+AGG 0.611513 6.3:-6124522 None:intergenic
TTGATTTAGTTACCTCCGCA+GGG 0.612955 6.3:-6125061 None:intergenic
AAAGTTGCTGGCGAAACTGG+TGG 0.614136 6.3:-6124462 None:intergenic
GGCCAGCTGGAGGTAAAGGT+CGG 0.614768 6.3:-6124842 None:intergenic
GGCTAATCAAACCCCTGCGG+AGG 0.615539 6.3:+6125016 MS.gene20468:CDS
GAAAATCACCATATAAGCCA+CGG 0.623056 6.3:-6125226 None:intergenic
TGATTCCGACACCAGCAACT+GGG 0.627867 6.3:+6124358 MS.gene20468:CDS
AGGTCGTGCATTTGGCAGGG+GGG 0.628298 6.3:-6124772 None:intergenic
ATGGAAGAATACCGAAGAGG+AGG 0.631037 6.3:+6124317 MS.gene20468:CDS
GATGGATATATAGGAGGACG+TGG 0.633038 6.3:-6124516 None:intergenic
ACTCACAAACCACTTGCGAG+AGG 0.633226 6.3:-6125360 None:intergenic
ACAGTGATGAAACGGAGGAG+TGG 0.635697 6.3:+6125549 MS.gene20468:CDS
CGTCATAAATCTGTAATCCG+TGG 0.642310 6.3:+6125209 MS.gene20468:CDS
TGACTTGACTCCCAATGCCT+CGG 0.643816 6.3:-6125405 None:intergenic
TCAAGCCAACAGCCAACTGT+CGG 0.643822 6.3:+6124912 MS.gene20468:CDS
GTTGGCTGTTCCGGCCGACG+AGG 0.646045 6.3:+6125481 MS.gene20468:CDS
TAGCTAATGAGATAACACCT+TGG 0.648926 6.3:-6124965 None:intergenic
AGCTAATCAAGCCCCTGCGG+AGG 0.650230 6.3:+6124983 MS.gene20468:CDS
TTCGGATGAGGTAGAATCTG+GGG 0.651800 6.3:-6124873 None:intergenic
GGCTAATCAAGCCCCTGCGG+AGG 0.653058 6.3:+6125049 MS.gene20468:CDS
ATCGGCTAATCAAGCCCCTG+CGG 0.657358 6.3:+6125046 MS.gene20468:CDS
TCAGTATTAGAATTGAGACC+AGG 0.658819 6.3:-6124432 None:intergenic
CGATTTAGTTACCTCCGCAG+GGG 0.662302 6.3:-6125027 None:intergenic
TGCATTTAGCATGAATAACG+GGG 0.668436 6.3:-6125643 None:intergenic
GGAGCATGCACATTTACGGA+GGG 0.674855 6.3:-6124495 None:intergenic
TGATTTAGTTACCTCCGCAG+GGG 0.679811 6.3:-6125060 None:intergenic
TGGAGCATGCACATTTACGG+AGG 0.681918 6.3:-6124496 None:intergenic
GGTAGAGCATGGCCAGCTGG+AGG 0.682509 6.3:-6124852 None:intergenic
CGATTTAGTTACCTCCGCAG+GGG 0.683690 6.3:-6124994 None:intergenic
TTCATGGAAGAATACCGAAG+AGG 0.683939 6.3:+6124314 MS.gene20468:CDS
GAACATGGTGTCGAGAACAA+TGG 0.686510 6.3:+6124630 MS.gene20468:CDS
ATTAGCTAATCAAGCCCCTG+CGG 0.693399 6.3:+6124980 MS.gene20468:CDS
GATGTGGCTTAAAGGTGCCG+AGG 0.696373 6.3:+6125388 MS.gene20468:CDS
TTGCTGGCGAAACTGGTGGA+TGG 0.703445 6.3:-6124458 None:intergenic
GGTTTGTGAGTGAGACGATG+TGG 0.711325 6.3:+6125372 MS.gene20468:CDS
ATCGGCTAATCAAACCCCTG+CGG 0.717147 6.3:+6125013 MS.gene20468:CDS
AATTAGACCATGACTCACAG+TGG 0.751691 6.3:-6124586 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACATAATATAATAACAAAAT+TGG - chr6.3:6125141-6125160 None:intergenic 10.0%
!! TGTTATTATATTATGTTTGT+AGG + chr6.3:6125145-6125164 MS.gene20468:intron 15.0%
!! GTGATATAAAAATTGAACTA+AGG - chr6.3:6125088-6125107 None:intergenic 20.0%
!!! TTATGTTTGTAGGATTTTAT+TGG + chr6.3:6125155-6125174 MS.gene20468:intron 20.0%
! AAAACTGATGAAGAATTTGT+TGG - chr6.3:6124177-6124196 None:intergenic 25.0%
!!! TTAGCATTTATTGATTCGAA+TGG - chr6.3:6124561-6124580 None:intergenic 25.0%
AAAGAAAGAAGATGAAGAGT+TGG + chr6.3:6125463-6125482 MS.gene20468:CDS 30.0%
AAATTAGAATATCCGACAGT+TGG - chr6.3:6124927-6124946 None:intergenic 30.0%
CAAAATACATGTGCATTATG+TGG + chr6.3:6125506-6125525 MS.gene20468:CDS 30.0%
GAATATTTGGATCAAACTCA+AGG - chr6.3:6125181-6125200 None:intergenic 30.0%
GGTACGCAATTAAACAATAA+TGG - chr6.3:6125120-6125139 None:intergenic 30.0%
GTTTGATCCAAATATTCTCA+AGG + chr6.3:6125184-6125203 MS.gene20468:CDS 30.0%
TCTGCATTTAGCATGAATAA+CGG - chr6.3:6125648-6125667 None:intergenic 30.0%
! ATCTTCTTTCTTTTCTTCAG+TGG - chr6.3:6125456-6125475 None:intergenic 30.0%
! CACATAATGCACATGTATTT+TGG - chr6.3:6125508-6125527 None:intergenic 30.0%
! CGCAATTAAACAATAATGGA+AGG - chr6.3:6125116-6125135 None:intergenic 30.0%
! TAATTTGATTAGTTCACTCG+TGG + chr6.3:6124941-6124960 MS.gene20468:CDS 30.0%
!! TCATCAAAACATCTTTTTCG+CGG - chr6.3:6124210-6124229 None:intergenic 30.0%
AGCTAATGAGATAACACCTT+GGG - chr6.3:6124967-6124986 None:intergenic 35.0%
CGAAAAGACAAGAAACTTCA+TGG + chr6.3:6124298-6124317 MS.gene20468:CDS 35.0%
CTGCATTTAGCATGAATAAC+GGG - chr6.3:6125647-6125666 None:intergenic 35.0%
GAAAATCACCATATAAGCCA+CGG - chr6.3:6125229-6125248 None:intergenic 35.0%
GCTCATCTTTGGATTTGAAT+CGG - chr6.3:6125277-6125296 None:intergenic 35.0%
GGATTCTTCGATGGATATAT+AGG - chr6.3:6124528-6124547 None:intergenic 35.0%
TAGCTAATGAGATAACACCT+TGG - chr6.3:6124968-6124987 None:intergenic 35.0%
TAGGCATCAATTAGAGCTAT+TGG - chr6.3:6124270-6124289 None:intergenic 35.0%
TCACTGTAAAACTCCTCAAA+AGG - chr6.3:6125536-6125555 None:intergenic 35.0%
TCAGTATTAGAATTGAGACC+AGG - chr6.3:6124435-6124454 None:intergenic 35.0%
TGACGAACCTTGAGAATATT+TGG - chr6.3:6125194-6125213 None:intergenic 35.0%
TGAGATGGAAAAAACTGGAA+AGG - chr6.3:6124714-6124733 None:intergenic 35.0%
TGCATTTAGCATGAATAACG+GGG - chr6.3:6125646-6125665 None:intergenic 35.0%
TTATTCCATTAGGCGCATTA+AGG - chr6.3:6125595-6125614 None:intergenic 35.0%
TTCTTCGATGGATATATAGG+AGG - chr6.3:6124525-6124544 None:intergenic 35.0%
! AAGAGTTGTTTCCGATTCTT+TGG - chr6.3:6124821-6124840 None:intergenic 35.0%
! ATGCCTGTTGTTATTCCATT+AGG - chr6.3:6125605-6125624 None:intergenic 35.0%
! ATTATGTGGAGAACCTTTTG+AGG + chr6.3:6125520-6125539 MS.gene20468:CDS 35.0%
! GGAGTTTTACAGTGATGAAA+CGG + chr6.3:6125541-6125560 MS.gene20468:CDS 35.0%
! TTTCTTTTCTTCAGTGGTCT+CGG - chr6.3:6125450-6125469 None:intergenic 35.0%
!! ATAGCTCTAATTGATGCCTA+TGG + chr6.3:6124270-6124289 MS.gene20468:CDS 35.0%
!! GATTCTGAGATGGAAAAAAC+TGG - chr6.3:6124719-6124738 None:intergenic 35.0%
AATACTACCACTGTGAGTCA+TGG + chr6.3:6124579-6124598 MS.gene20468:CDS 40.0%
AATTAGACCATGACTCACAG+TGG - chr6.3:6124589-6124608 None:intergenic 40.0%
ATCCATCGAAGAATCCTGTT+AGG + chr6.3:6124532-6124551 MS.gene20468:CDS 40.0%
ATTCGGATGAGGTAGAATCT+GGG - chr6.3:6124877-6124896 None:intergenic 40.0%
CATCTTTGGATTTGAATCGG+AGG - chr6.3:6125274-6125293 None:intergenic 40.0%
CGTCATAAATCTGTAATCCG+TGG + chr6.3:6125209-6125228 MS.gene20468:CDS 40.0%
GAATAACAACAGGCATAGAC+AGG + chr6.3:6125609-6125628 MS.gene20468:CDS 40.0%
GATGGAAAAAACTGGAAAGG+CGG - chr6.3:6124711-6124730 None:intergenic 40.0%
GTATACCTTAATGCGCCTAA+TGG + chr6.3:6125587-6125606 MS.gene20468:CDS 40.0%
TCTGTAATCCGTGGCTTATA+TGG + chr6.3:6125218-6125237 MS.gene20468:CDS 40.0%
TTCATGGAAGAATACCGAAG+AGG + chr6.3:6124314-6124333 MS.gene20468:CDS 40.0%
TTCCTAACAGGATTCTTCGA+TGG - chr6.3:6124537-6124556 None:intergenic 40.0%
TTGATTTAGTTACCTCCGCA+GGG - chr6.3:6125064-6125083 None:intergenic 40.0%
TTGTTTCCGATTCTTTGGTC+TGG - chr6.3:6124816-6124835 None:intergenic 40.0%
! ATTGATTTAGTTACCTCCGC+AGG - chr6.3:6125065-6125084 None:intergenic 40.0%
! ATTTGTTGGTGTTTCTCTCC+TGG - chr6.3:6124163-6124182 None:intergenic 40.0%
! GATTCGAATGGATTCCTAAC+AGG - chr6.3:6124549-6124568 None:intergenic 40.0%
! GTTTTACAGTGATGAAACGG+AGG + chr6.3:6125544-6125563 MS.gene20468:CDS 40.0%
! TGCATTTGCTGCAATAGTAG+CGG - chr6.3:6124388-6124407 None:intergenic 40.0%
! TTGTCTTTTCGCACTACCAT+AGG - chr6.3:6124289-6124308 None:intergenic 40.0%
!! AGAGCTATTGGATTTTGACG+AGG - chr6.3:6124258-6124277 None:intergenic 40.0%
!!! ACATGTATTTTGGTCCTCGT+CGG - chr6.3:6125498-6125517 None:intergenic 40.0%
AATATCCGACAGTTGGCTGT+TGG - chr6.3:6124920-6124939 None:intergenic 45.0%
ACGTGGAGCATGCACATTTA+CGG - chr6.3:6124502-6124521 None:intergenic 45.0%
AGATGAAGAGTTGGCTGTTC+CGG + chr6.3:6125472-6125491 MS.gene20468:CDS 45.0%
AGTGAGACGATGTGGCTTAA+AGG + chr6.3:6125380-6125399 MS.gene20468:CDS 45.0%
ATGCAACTTCTTCAGCGTCA+AGG + chr6.3:6124403-6124422 MS.gene20468:CDS 45.0%
ATGGAAGAATACCGAAGAGG+AGG + chr6.3:6124317-6124336 MS.gene20468:CDS 45.0%
ATTAGCTAATCAAGCCCCTG+CGG + chr6.3:6124980-6124999 MS.gene20468:CDS 45.0%
ATTCTACCTCATCCGAATCC+TGG + chr6.3:6124879-6124898 MS.gene20468:CDS 45.0%
CCAATTGAACTCCTCCTCTT+CGG - chr6.3:6124331-6124350 None:intergenic 45.0%
CCATGTTCATGCACAGGAAT+AGG - chr6.3:6124618-6124637 None:intergenic 45.0%
CCTATGCCAGACCAAAGAAT+CGG + chr6.3:6124807-6124826 MS.gene20468:CDS 45.0%
CCTATTCCTGTGCATGAACA+TGG + chr6.3:6124615-6124634 MS.gene20468:CDS 45.0%
CGAAGAGGAGGAGTTCAATT+GGG + chr6.3:6124329-6124348 MS.gene20468:CDS 45.0%
GACACATTAGGACCAGGATT+CGG - chr6.3:6124894-6124913 None:intergenic 45.0%
GATGGATATATAGGAGGACG+TGG - chr6.3:6124519-6124538 None:intergenic 45.0%
GATTCGGATGAGGTAGAATC+TGG - chr6.3:6124878-6124897 None:intergenic 45.0%
GCGCCTAATGGAATAACAAC+AGG + chr6.3:6125599-6125618 MS.gene20468:CDS 45.0%
TCAAAAGTTGCTGGCGAAAC+TGG - chr6.3:6124468-6124487 None:intergenic 45.0%
TGATTTAGTTACCTCCGCAG+GGG - chr6.3:6125063-6125082 None:intergenic 45.0%
TGCAACTTCTTCAGCGTCAA+GGG + chr6.3:6124404-6124423 MS.gene20468:CDS 45.0%
TTCGGATGAGGTAGAATCTG+GGG - chr6.3:6124876-6124895 None:intergenic 45.0%
! GAACATGGTGTCGAGAACAA+TGG + chr6.3:6124630-6124649 MS.gene20468:CDS 45.0%
! GCATTTGCTGCAATAGTAGC+GGG - chr6.3:6124387-6124406 None:intergenic 45.0%
! TTTTCTTCAGTGGTCTCGGT+TGG - chr6.3:6125446-6125465 None:intergenic 45.0%
AAAGTGAATTGCGACGCTGC+TGG - chr6.3:6124741-6124760 None:intergenic 50.0%
AAAGTTGCTGGCGAAACTGG+TGG - chr6.3:6124465-6124484 None:intergenic 50.0%
AACAGGTCGTGCATTTGGCA+GGG - chr6.3:6124778-6124797 None:intergenic 50.0%
ACAGTGATGAAACGGAGGAG+TGG + chr6.3:6125549-6125568 MS.gene20468:CDS 50.0%
ACGGAGGAGTGGATGTATAG+AGG + chr6.3:6125560-6125579 MS.gene20468:CDS 50.0%
ACTCACAAACCACTTGCGAG+AGG - chr6.3:6125363-6125382 None:intergenic 50.0%
AGATGAGCACAGCAGTCACA+TGG + chr6.3:6125289-6125308 MS.gene20468:CDS 50.0%
AGCACAGCAGTCACATGGAT+TGG + chr6.3:6125294-6125313 MS.gene20468:CDS 50.0%
ATCGGCTAATCAAACCCCTG+CGG + chr6.3:6125013-6125032 MS.gene20468:CDS 50.0%
ATGATTCCGACACCAGCAAC+TGG + chr6.3:6124357-6124376 MS.gene20468:CDS 50.0%
ATTAGTTCACTCGTGGCCCA+AGG + chr6.3:6124948-6124967 MS.gene20468:CDS 50.0%
CCACAAGTTGTGCACTGTCT+AGG - chr6.3:6125251-6125270 None:intergenic 50.0%
CCCTGCGGAGGTAACTAAAT+CGG + chr6.3:6124995-6125014 MS.gene20468:CDS 50.0%
CCGAAGAGGAGGAGTTCAAT+TGG + chr6.3:6124328-6124347 MS.gene20468:CDS 50.0%
CCGATTCTTTGGTCTGGCAT+AGG - chr6.3:6124810-6124829 None:intergenic 50.0%
CCGATTTAGTTACCTCCGCA+GGG - chr6.3:6124998-6125017 None:intergenic 50.0%
CCTAGACAGTGCACAACTTG+TGG + chr6.3:6125248-6125267 MS.gene20468:CDS 50.0%
CGATTTAGTTACCTCCGCAG+GGG - chr6.3:6124997-6125016 None:intergenic 50.0%
CTCACAAACCACTTGCGAGA+GGG - chr6.3:6125362-6125381 None:intergenic 50.0%
CTTTGGTCTGGCATAGGAAG+TGG - chr6.3:6124804-6124823 None:intergenic 50.0%
GAGTTCAGCTATCGCAGCAA+CGG + chr6.3:6124228-6124247 MS.gene20468:CDS 50.0%
GGAGCATGCACATTTACGGA+GGG - chr6.3:6124498-6124517 None:intergenic 50.0%
GGCATAACAGGTCGTGCATT+TGG - chr6.3:6124783-6124802 None:intergenic 50.0%
GGCATAGGAAGTGGCATAAC+AGG - chr6.3:6124795-6124814 None:intergenic 50.0%
GGCCTCGTTTCAAAAGTTGC+TGG - chr6.3:6124477-6124496 None:intergenic 50.0%
GGTTTGTGAGTGAGACGATG+TGG + chr6.3:6125372-6125391 MS.gene20468:CDS 50.0%
GTCTCGGTTGGCAAAAAACC+TGG - chr6.3:6125434-6125453 None:intergenic 50.0%
GTGACTGCTGTGCTCATCTT+TGG - chr6.3:6125288-6125307 None:intergenic 50.0%
TAACAGGTCGTGCATTTGGC+AGG - chr6.3:6124779-6124798 None:intergenic 50.0%
TCAAGCCAACAGCCAACTGT+CGG + chr6.3:6124912-6124931 MS.gene20468:CDS 50.0%
TCGACACCATGTTCATGCAC+AGG - chr6.3:6124624-6124643 None:intergenic 50.0%
TGACTTGACTCCCAATGCCT+CGG - chr6.3:6125408-6125427 None:intergenic 50.0%
TGATTCCGACACCAGCAACT+GGG + chr6.3:6124358-6124377 MS.gene20468:CDS 50.0%
TGGAGCATGCACATTTACGG+AGG - chr6.3:6124499-6124518 None:intergenic 50.0%
TGGCTTGACACATTAGGACC+AGG - chr6.3:6124900-6124919 None:intergenic 50.0%
TTAGGACCAGGATTCGGATG+AGG - chr6.3:6124888-6124907 None:intergenic 50.0%
! GTAGAATCTGGGGTAGAGCA+TGG - chr6.3:6124866-6124885 None:intergenic 50.0%
!! CTTAAAGGTGCCGAGGCATT+GGG + chr6.3:6125395-6125414 MS.gene20468:CDS 50.0%
!! GGCTGTTGGCTTGACACATT+AGG - chr6.3:6124906-6124925 None:intergenic 50.0%
!!! CGCCAGCAACTTTTGAAACG+AGG + chr6.3:6124472-6124491 MS.gene20468:CDS 50.0%
ACAGGTCGTGCATTTGGCAG+GGG - chr6.3:6124777-6124796 None:intergenic 55.0%
AGCAGAAACCCTCTCGCAAG+TGG + chr6.3:6125351-6125370 MS.gene20468:CDS 55.0%
ATCGGCTAATCAAGCCCCTG+CGG + chr6.3:6125046-6125065 MS.gene20468:CDS 55.0%
GAAAGGCGGTGTTTGTCCAC+TGG - chr6.3:6124697-6124716 None:intergenic 55.0%
GCGAGTTAGGCAACTGATGC+AGG - chr6.3:6124671-6124690 None:intergenic 55.0%
GGCATAGACAGGTCGCAGTT+TGG + chr6.3:6125620-6125639 MS.gene20468:CDS 55.0%
TTCCGACCTTTACCTCCAGC+TGG + chr6.3:6124840-6124859 MS.gene20468:CDS 55.0%
TTGCCTAACTCGCCAACCAG+TGG + chr6.3:6124678-6124697 MS.gene20468:CDS 55.0%
TTGCTGGCGAAACTGGTGGA+TGG - chr6.3:6124461-6124480 None:intergenic 55.0%
TTGGGAGTCAAGTCAGCTCC+AGG + chr6.3:6125413-6125432 MS.gene20468:CDS 55.0%
! GACGCTGCTGGATTCTGAGA+TGG - chr6.3:6124729-6124748 None:intergenic 55.0%
! GCCGATTTAGTTACCTCCGC+AGG - chr6.3:6124999-6125018 None:intergenic 55.0%
! TGTCCACTGGTTGGCGAGTT+AGG - chr6.3:6124684-6124703 None:intergenic 55.0%
!! GATGTGGCTTAAAGGTGCCG+AGG + chr6.3:6125388-6125407 MS.gene20468:CDS 55.0%
!! GCTTAAAGGTGCCGAGGCAT+TGG + chr6.3:6125394-6125413 MS.gene20468:CDS 55.0%
!! TCAGCGTCAAGGGTGTTTCC+TGG + chr6.3:6124414-6124433 MS.gene20468:CDS 55.0%
!!! GTATTTTGGTCCTCGTCGGC+CGG - chr6.3:6125494-6125513 None:intergenic 55.0%
AGCTAATCAAGCCCCTGCGG+AGG + chr6.3:6124983-6125002 MS.gene20468:CDS 60.0%
AGGTCGTGCATTTGGCAGGG+GGG - chr6.3:6124775-6124794 None:intergenic 60.0%
CAGGTCGTGCATTTGGCAGG+GGG - chr6.3:6124776-6124795 None:intergenic 60.0%
GCATGGCCAGCTGGAGGTAA+AGG - chr6.3:6124849-6124868 None:intergenic 60.0%
GGCCAGCTGGAGGTAAAGGT+CGG - chr6.3:6124845-6124864 None:intergenic 60.0%
GGCGGTGTTTGTCCACTGGT+TGG - chr6.3:6124693-6124712 None:intergenic 60.0%
GGCTAATCAAACCCCTGCGG+AGG + chr6.3:6125016-6125035 MS.gene20468:CDS 60.0%
GGCTTCCCAGTTGCTGGTGT+CGG - chr6.3:6124366-6124385 None:intergenic 60.0%
! TTTGGCAGGGGGGCATGTCT+TGG - chr6.3:6124765-6124784 None:intergenic 60.0%
GGCTAATCAAGCCCCTGCGG+AGG + chr6.3:6125049-6125068 MS.gene20468:CDS 65.0%
GGTAGAGCATGGCCAGCTGG+AGG - chr6.3:6124855-6124874 None:intergenic 65.0%
TGGGGTAGAGCATGGCCAGC+TGG - chr6.3:6124858-6124877 None:intergenic 65.0%
!! GTAGCGGGCTTCCCAGTTGC+TGG - chr6.3:6124372-6124391 None:intergenic 65.0%
GTTGGCTGTTCCGGCCGACG+AGG + chr6.3:6125481-6125500 MS.gene20468:CDS 70.0%


Chromosome Type Strat End Strand Name
chr6.3 gene 6124153 6125673 6124153 ID=MS.gene20468
chr6.3 mRNA 6124153 6125673 6124153 ID=MS.gene20468.t1;Parent=MS.gene20468
chr6.3 exon 6124153 6125070 6124153 ID=MS.gene20468.t1.exon1;Parent=MS.gene20468.t1
chr6.3 CDS 6124153 6125070 6124153 ID=cds.MS.gene20468.t1;Parent=MS.gene20468.t1
chr6.3 exon 6125167 6125673 6125167 ID=MS.gene20468.t1.exon2;Parent=MS.gene20468.t1
chr6.3 CDS 6125167 6125673 6125167 ID=cds.MS.gene20468.t1;Parent=MS.gene20468.t1
Gene Sequence

>MS.gene20468

ATGCTTGCCAGGAGAGAAACACCAACAAATTCTTCATCAGTTTTCTCACACTTTCCGCGAAAAAGATGTTTTGATGAGTTCAGCTATCGCAGCAACGGACAACCTCGTCAAAATCCAATAGCTCTAATTGATGCCTATGGTAGTGCGAAAAGACAAGAAACTTCATGGAAGAATACCGAAGAGGAGGAGTTCAATTGGGAAGATATGATTCCGACACCAGCAACTGGGAAGCCCGCTACTATTGCAGCAAATGCAACTTCTTCAGCGTCAAGGGTGTTTCCTGGTCTCAATTCTAATACTGAGTACCATCCACCAGTTTCGCCAGCAACTTTTGAAACGAGGCCCTCCGTAAATGTGCATGCTCCACGTCCTCCTATATATCCATCGAAGAATCCTGTTAGGAATCCATTCGAATCAATAAATGCTAATACTACCACTGTGAGTCATGGTCTAATTAATAGACCTATTCCTGTGCATGAACATGGTGTCGAGAACAATGGTATCAGTAAAAGAAACCTGCATCAGTTGCCTAACTCGCCAACCAGTGGACAAACACCGCCTTTCCAGTTTTTTCCATCTCAGAATCCAGCAGCGTCGCAATTCACTTTGCCAAGACATGCCCCCCTGCCAAATGCACGACCTGTTATGCCACTTCCTATGCCAGACCAAAGAATCGGAAACAACTCTTTCCGACCTTTACCTCCAGCTGGCCATGCTCTACCCCAGATTCTACCTCATCCGAATCCTGGTCCTAATGTGTCAAGCCAACAGCCAACTGTCGGATATTCTAATTTGATTAGTTCACTCGTGGCCCAAGGTGTTATCTCATTAGCTAATCAAGCCCCTGCGGAGGTAACTAAATCGGCTAATCAAACCCCTGCGGAGGTAACTAAATCGGCTAATCAAGCCCCTGCGGAGGTAACTAAATCAATCCTTAGTTCAATTTTTATATCACTTTTTCCTTCCATTATTGTTTAATTGCGTACCAATTTTGTTATTATATTATGTTTGTAGGATTTTATTGGCCTTGAGTTTGATCCAAATATTCTCAAGGTTCGTCATAAATCTGTAATCCGTGGCTTATATGGTGATTTTCCTAGACAGTGCACAACTTGTGGCCTCCGATTCAAATCCAAAGATGAGCACAGCAGTCACATGGATTGGCATGTAACTAAGAATCGTATGTCTAAAAACAATAAGCAGAAACCCTCTCGCAAGTGGTTTGTGAGTGAGACGATGTGGCTTAAAGGTGCCGAGGCATTGGGAGTCAAGTCAGCTCCAGGTTTTTTGCCAACCGAGACCACTGAAGAAAAGAAAGAAGATGAAGAGTTGGCTGTTCCGGCCGACGAGGACCAAAATACATGTGCATTATGTGGAGAACCTTTTGAGGAGTTTTACAGTGATGAAACGGAGGAGTGGATGTATAGAGGAGCTGTATACCTTAATGCGCCTAATGGAATAACAACAGGCATAGACAGGTCGCAGTTTGGCCCCGTTATTCATGCTAAATGCAGATCTTAA
Protein sequence

>MS.gene20468.t1

MLARRETPTNSSSVFSHFPRKRCFDEFSYRSNGQPRQNPIALIDAYGSAKRQETSWKNTEEEEFNWEDMIPTPATGKPATIAANATSSASRVFPGLNSNTEYHPPVSPATFETRPSVNVHAPRPPIYPSKNPVRNPFESINANTTTVSHGLINRPIPVHEHGVENNGISKRNLHQLPNSPTSGQTPPFQFFPSQNPAASQFTLPRHAPLPNARPVMPLPMPDQRIGNNSFRPLPPAGHALPQILPHPNPGPNVSSQQPTVGYSNLISSLVAQGVISLANQAPAEVTKSANQTPAEVTKSANQAPAEDFIGLEFDPNILKVRHKSVIRGLYGDFPRQCTTCGLRFKSKDEHSSHMDWHVTKNRMSKNNKQKPSRKWFVSETMWLKGAEALGVKSAPGFLPTETTEEKKEDEELAVPADEDQNTCALCGEPFEEFYSDETEEWMYRGAVYLNAPNGITTGIDRSQFGPVIHAKCRS