AlfalfaGEDB | MS.gene20564

M. sativa cultivar XinJiangDaYe / MS.gene20564

KEGG: K11644
GO: GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02671.24

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene20564.t1	XP_013450895.2	90.1	463	44	1	1	463	7	467	6.50E-216	760

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene20564.t1	Q9LFQ3	56.0	432	139	7	32	414	47	476	8.0e-114	412.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene20564.t1	A0A396HB94	90.1	463	44	1	1	463	7	467	4.7e-216	760.0

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene20564.t1	TR	Others

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene20564.t1	MTR_6g008995	91.391	453	37	1	1	453	1	451	0.0	804
MS.gene20564.t1	MTR_6g008995	90.418	407	37	1	58	464	1	405	0.0	751
MS.gene20564.t1	MTR_6g008970	69.021	439	78	6	27	414	53	484	0.0	564
MS.gene20564.t1	MTR_8g062700	44.399	491	176	11	9	412	20	500	2.71e-101	331
MS.gene20564.t1	MTR_8g062700	44.399	491	175	12	9	412	20	499	1.20e-99	326
MS.gene20564.t1	MTR_5g036670	42.348	477	187	11	19	412	25	496	5.10e-89	296
MS.gene20564.t1	MTR_7g013410	44.521	146	72	3	41	183	2	141	2.82e-35	128
MS.gene20564.t1	MTR_8g062350	38.660	194	78	4	31	183	8	201	6.79e-32	121
MS.gene20564.t1	MTR_1g105955	40.764	157	87	2	28	183	6	157	6.88e-28	109
MS.gene20564.t1	MTR_1g104960	36.000	150	94	2	37	184	13	162	2.83e-24	99.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene20564.t1	AT5G15020	56.351	433	138	6	31	414	46	476	3.54e-141	438
MS.gene20564.t1	AT5G15020	56.351	433	138	6	31	414	46	476	3.92e-141	438
MS.gene20564.t1	AT3G01320	55.556	432	143	10	31	414	51	481	3.91e-132	414
MS.gene20564.t1	AT3G01320	53.935	432	138	11	31	414	51	469	1.24e-125	396
MS.gene20564.t1	AT1G24190	43.964	439	190	12	23	412	3	434	3.19e-96	316
MS.gene20564.t1	AT1G24190	43.964	439	190	12	23	412	3	434	3.82e-96	316
MS.gene20564.t1	AT1G24190	43.341	443	191	13	23	412	3	438	6.33e-93	307
MS.gene20564.t1	AT1G70060	42.350	451	195	8	26	412	3	452	7.70e-91	301
MS.gene20564.t1	AT1G70060	42.350	451	195	8	26	412	3	452	7.70e-91	301
MS.gene20564.t1	AT1G24200	51.515	198	91	3	23	219	3	196	3.35e-53	177

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Find 91 sgRNAs with CRISPR-Local

Find 202 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACATACGAATCAGCACT+TGG	0.592202	6.3:+4908740	None:intergenic
AAAATATGATATGTTCCTTC+AGG	0.367679	6.3:-4907883	MS.gene20564:CDS
AAATGACCATCAGTAGCGAG+TGG	0.680516	6.3:+4905497	None:intergenic
AACAATGTTTGCCGACGCTA+AGG	0.513153	6.3:+4905354	None:intergenic
AACATACAAGGAGAAATACA+TGG	0.576965	6.3:-4905399	MS.gene20564:CDS
AACGAATGATTTACAAAATA+TGG	0.240479	6.3:-4906070	MS.gene20564:intron
AACGTGAGATCAAGGATATA+AGG	0.454641	6.3:-4907072	MS.gene20564:CDS
AAGTTTATGTGCGAAAGTTA+AGG	0.441373	6.3:-4906166	MS.gene20564:CDS
AATCACTATGGTCCTTAAAA+AGG	0.198941	6.3:+4907239	None:intergenic
AATGAAGCATGTTGAGTGGA+AGG	0.549197	6.3:+4907172	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACATACAAGGAGAAATACA+TGG	-	chr6.3:4908378-4908397	MS.gene20564:intron	30.0%
AAGTTTATGTGCGAAAGTTA+AGG	-	chr6.3:4907611-4907630	MS.gene20564:CDS	30.0%
AATCACTATGGTCCTTAAAA+AGG	+	chr6.3:4906541-4906560	None:intergenic	30.0%
ACAAGAGTTCATAATATTGC+AGG	+	chr6.3:4905542-4905561	None:intergenic	30.0%
ACATACAAGGAGAAATACAT+GGG	-	chr6.3:4908379-4908398	MS.gene20564:intron	30.0%
ATCACTATGGTCCTTAAAAA+GGG	+	chr6.3:4906540-4906559	None:intergenic	30.0%
ATTGAACACTACAAGTGAAA+AGG	+	chr6.3:4905183-4905202	None:intergenic	30.0%
CAACAGTGAAACACAAAATT+AGG	+	chr6.3:4905142-4905161	None:intergenic	30.0%
CAATCAAGAAAGATGTTAAC+AGG	+	chr6.3:4907493-4907512	None:intergenic	30.0%
CAATGACAATTTCAGATATC+CGG	+	chr6.3:4905720-4905739	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6.3	gene	4905028	4908771	4905028	ID=MS.gene20564
chr6.3	mRNA	4905028	4908771	4905028	ID=MS.gene20564.t1;Parent=MS.gene20564
chr6.3	exon	4908749	4908771	4908749	ID=MS.gene20564.t1.exon1;Parent=MS.gene20564.t1
chr6.3	CDS	4908749	4908771	4908749	ID=cds.MS.gene20564.t1;Parent=MS.gene20564.t1
chr6.3	exon	4907858	4908043	4907858	ID=MS.gene20564.t1.exon2;Parent=MS.gene20564.t1
chr6.3	CDS	4907858	4908043	4907858	ID=cds.MS.gene20564.t1;Parent=MS.gene20564.t1
chr6.3	exon	4907573	4907753	4907573	ID=MS.gene20564.t1.exon3;Parent=MS.gene20564.t1
chr6.3	CDS	4907573	4907753	4907573	ID=cds.MS.gene20564.t1;Parent=MS.gene20564.t1
chr6.3	exon	4907392	4907490	4907392	ID=MS.gene20564.t1.exon4;Parent=MS.gene20564.t1
chr6.3	CDS	4907392	4907490	4907392	ID=cds.MS.gene20564.t1;Parent=MS.gene20564.t1
chr6.3	exon	4906957	4907269	4906957	ID=MS.gene20564.t1.exon5;Parent=MS.gene20564.t1
chr6.3	CDS	4906957	4907269	4906957	ID=cds.MS.gene20564.t1;Parent=MS.gene20564.t1
chr6.3	exon	4906071	4906207	4906071	ID=MS.gene20564.t1.exon6;Parent=MS.gene20564.t1
chr6.3	CDS	4906071	4906207	4906071	ID=cds.MS.gene20564.t1;Parent=MS.gene20564.t1
chr6.3	exon	4905784	4905859	4905784	ID=MS.gene20564.t1.exon7;Parent=MS.gene20564.t1
chr6.3	CDS	4905784	4905859	4905784	ID=cds.MS.gene20564.t1;Parent=MS.gene20564.t1
chr6.3	exon	4905668	4905697	4905668	ID=MS.gene20564.t1.exon8;Parent=MS.gene20564.t1
chr6.3	CDS	4905668	4905697	4905668	ID=cds.MS.gene20564.t1;Parent=MS.gene20564.t1
chr6.3	exon	4905320	4905521	4905320	ID=MS.gene20564.t1.exon9;Parent=MS.gene20564.t1
chr6.3	CDS	4905320	4905521	4905320	ID=cds.MS.gene20564.t1;Parent=MS.gene20564.t1
chr6.3	exon	4905028	4905187	4905028	ID=MS.gene20564.t1.exon10;Parent=MS.gene20564.t1
chr6.3	CDS	4905028	4905187	4905028	ID=cds.MS.gene20564.t1;Parent=MS.gene20564.t1

Gene Sequence

>MS.gene20564

ATGGGTTCACCAAGTGCTGATTCGTATGTTTTCTTTGTTACTGTCATTATTTTAATTTGAAAATTTGATTTTTTTTTGACCTATTTTGTGTTTCACTCTTTTTGGATTTGCCCTAATTTTGTGTTTCACTGTTGAATTTGAATTCATATATACCTTTTCACTTGTAGTGTTCAATTGTTGTTCAATTTCATTAGGGTTATGTTTGATTTGAGTTTAAATTGATTGTGTAGTTTTTTTTTTTTTTTTGAAACTCGATATCCTGCTCTTGAACAAACTAATCCGAGGGGACCATCCCAGGGGATCAATCGGGAGGTTTTATTTTTTTTATTTCTATTTGAAAACTCGGTATCCGGCTCTAGAACCGACTAATCCGAGGGGCCAAATCATATTGATTTGCATTATTTTTGTTTATGAAACTTACTAGCCAAGTAATACGAGTAATGTTGAAATTAACATAATTTGGATTAAAGAACTATGTGTCTGCATGTATTTGTGGACTAGTATTTTTGAACCTGCAATATTATGAACTCTTGTTAGTTTGTTGATATTTTGGATATCTGAAATATTTGTCAAGCTTTGAAGAACTGTGTCTTTGCATGTATTTGTGGACTAAGATTTTTGAACCCTGGAATATTATGAATTTTGATTTTGATATTGGAGAAATAGATGTCTTGTTCGTTGTTGATATTCCGGATATCTGAAATTGTCATTGCATTTTGTCTACGAAGCTCTGAAAATGGAGGTGGCAGTTGTGAAGGTGGAGTTGTTAATGGCGGTGGAGGTGCAAGTTCTCCCAGGAAGCTGACAACCATTGATGCTTTATCTTATTTGAAGGAAGTGAAAAACACGTTTCCGGATCAAAAAGAAAAATATGATATGTTCCTTCAGGTCATGAAAGATTTCAAGGCTCAAAAGTAGGTTCTTAACCTTATTTTTACGTTTTGTAATGAGTTTGAAACGGGGAACATTGTACTTACAATCAAGGGATCTCAGTATTTTGTGTGGCGATTGTTTCCAGGACGGACACTCATGGTGTCATAGCTGCTGTCAAGGAACTATTCAAAGGTCACAACAATTTGATTTATGGATTCAACGCTTACCTACCAAAAGGACATGAGATAAGACTTGATGAGGATGAAGCTCCTCAAAAGAAAAAGGTTGAATTTGAAGATGCTATTAGTTTCGTGGGCAAGATAAAGGTAATGTGCTTTTTTCAGTTACTAAGCGAGTTTACTGATATCGTTAATTTCTAGCTGTAATCGGTAGATTTTTCTTCTACAGATACGATTCCAAAATCAGGAGCATGTTTACAAATCATTCTTGGACATTTTGAATATGTATCGCAAAGAACATAAGACCATCACTGAGGTTTACAGTGAGGTAATATGGTTTGTCCTATATACTTTCAGCACTTTGTTGTATTTTTCTAATTTTCTTTAAAAAATGTTTTGGTTGAAATGTTTACTCTTTTTATTTTAACTTTTTTACATAAAAATCTCTAGGTTGCTACCCTTTTTAAGGACCATAGTGATTTGCTTGAGGAGTTCACTAGATTCTTACCAGATAATTCACTAAAACCTTCCACTCAACATGCTTCATTTGGTCATCGTGATCTGAGTGTTGAACATCCTGATCTGGATGACGACGAAACAATGAACTTGCGCAAGGAGCAAAGGAAACGTGAGATCAAGGATATAAGGAAACGTGATTTGAACTCACTACGCTCTCCTAACAAAAAGAAATCTGTTAAGAAGGCTGAAGCTAATGGATTGTCTTCTGACTTAGCTTCTCATGATGATAAAGATGCGTTAAAGAGTAAGCTATCATACTATGCTTTGGATGAATATGTTGCTTGAACATGTGATCTATTTTTATTACATTTTAGGTTCTTACTGTTATTTCAGTTTGCGTGTAAACCATCACGTTTTCAATATGCTGTAGATTTTTATCTAGTTCTATGTCATAAAGTAGTATGATTGTCGGTACTTGTGCCAACACGTAAAAAATTAAGAAGAGGAAATGAAACTATAACTAGTTATCTGTATTCTCAAACACTCAAATTGTAGATACTAGATACAGAGAGATTGAATATGAATTCCATTCTCTAGAAGTCAATAGTGATTTTTGATTATATATACACAATACTTGGATCACAAATAACTTTTGAGTTACAGAATATAGAATAGAGATTCATTCTCTTTGTATTCAGTTTCTATCACAGTTGAAGAAGCTCGTTTAACAAGAGAACTATAGTGGAGGATTAGCGTACGTAGATCAATTGTTATAAAACAATCGAATTTGACTCAACTATTTATATTACCGTTATATCATTTTAGATGCATAAAACTTAACTATTAGGACCAATGTTGAATGTTAATTTCATATTTGAAGTTAAAAAATGTATGCATCATTAAGTGTAGCCATTTCGATTTCTTGAAGTTTCTTTATTAGTATTCCTTTGTCCTGTTAACATCTTTCTTGATTGTTAGCTTTCTTCTTTTATTTGAGATAATATTGACCAATTCTAAAATTTGTTATTTATTTAATTTCCGTATTCGTGTCAGTCATGTATAGTCAAGCGTTAAGTTTATGTGCGAAAGTTAAGGAGAGGTTGAGCAGCGCTGAGGACTACCAAACATTCTTGAAGTGCCTTCATGATTTTAGCAATGGAATAATAAAAACGAATGATTTACAAAATATGGTATGTGCTTCCTTTTCGTGTATCTTTGCTGACTTTGGATCATTAGTGCTATGTAGTATTCCATTTTGGCGTTTTCAGTTGTATTCTAATGCAATGTTATTTTTATCAAGGTCCGATTCATTGAAATAGGTCTCACTATCTCGGAAGCATTACCTTGCGAATTCTATTGCGGTCTAGTTTAATTTATATACTTTCGAAATATATATTTCAGGTGACTGATTTACTTGGAAAGCATTCTGATCTCATGAGCGAATTCAATGATTATTTGGAGCGTTGTGAAAATACTGGTAATTGTTTTGCAACTCTTTTGTTTAACGTTATTTTCGAATTTTCTCATGCCTTGAGGTTTCATTCTGCGTATTTGTTTTTGCAGACGGGTTTCTTGCTGGTGTCGCGAGTGAAAGTATGTCGACGTACCATAAATATCATTGCAATTTTTTACTTCGTTTAAAGAGTCATTCAAATGATGATGTTGAATTAACTGCGTAATTTACAATTCACTTTTCATCTATTTGGTTGATTCTAATGTTTCAAATCGATTGATTTCAGAGCCACTCGCTACTGATGGTCATTTATCGGAATCATCCAAGGTGGAGGACGACGAAGACAAAGAACCCAAGCGTGAGATGGATGGATGTGAAGAGAAAGAAACATACAAGGAGAAATACATGGGAAAATCCATTCAAGAACTTGACCTTAGCGTCGGCAAACATTGTTCTCCGGGCTACCAGCTTCTACCTACTGACGACAGGTAAAACTTGCGTTATCAGCTTCTATCAACTGTCCTGCCTCCTGAATGTTCATTTTGGAGCCATTGTTTTGTCTTAAAATGAAATGTGTTGACATGCATTTAGGTGTGATGACATTGTTATTTCTGATGTAGGCCTAAGCTGGACATTGTTATACACATTGCGCGCGGTGACAAGTCAGCCGTCGCAGGTTGCAGCGGTCGTAGCCAGCAATCACTGTGGAGGCAGTGCGCATGGATTGGTCTTCTAATTATTATCTATTTATTTTTCTTTTATTTAATTTTAATTTTTTGA

Protein sequence

>MS.gene20564.t1

MGSPSADSSENGGGSCEGGVVNGGGGASSPRKLTTIDALSYLKEVKNTFPDQKEKYDMFLQVMKDFKAQKTDTHGVIAAVKELFKGHNNLIYGFNAYLPKGHEIRLDEDEAPQKKKVEFEDAISFVGKIKIRFQNQEHVYKSFLDILNMYRKEHKTITEVYSEVATLFKDHSDLLEEFTRFLPDNSLKPSTQHASFGHRDLSVEHPDLDDDETMNLRKEQRKREIKDIRKRDLNSLRSPNKKKSVKKAEANGLSSDLASHDDKDALKIMYSQALSLCAKVKERLSSAEDYQTFLKCLHDFSNGIIKTNDLQNMVTDLLGKHSDLMSEFNDYLERCENTDGFLAGVASEKPLATDGHLSESSKVEDDEDKEPKREMDGCEEKETYKEKYMGKSIQELDLSVGKHCSPGYQLLPTDDRPKLDIVIHIARGDKSAVAGCSGRSQQSLWRQCAWIGLLIIIYLFFFYLILIF