AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene20692

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene20692.t1 MTR_1g057920 95.935 123 5 0 1 123 1 123 2.75e-81 250
MS.gene20692.t1 MTR_0402s0040 63.000 200 47 1 9 181 1 200 4.70e-76 249
MS.gene20692.t1 MTR_0402s0040 65.174 201 56 5 376 567 236 431 8.87e-68 228
MS.gene20692.t1 MTR_7g113010 79.286 140 15 1 1 140 424 549 2.36e-67 229
MS.gene20692.t1 MTR_6g017200 75.610 123 30 0 8 130 32 154 2.62e-59 194
MS.gene20692.t1 MTR_2g070590 70.940 117 34 0 20 136 3 119 2.92e-50 169
MS.gene20692.t1 MTR_5g015480 60.714 140 51 1 1 140 27 162 3.82e-46 163
MS.gene20692.t1 MTR_0558s0020 31.174 247 123 5 48 247 50 296 2.56e-32 126
MS.gene20692.t1 MTR_6g051425 29.043 303 157 8 36 287 19 314 8.27e-32 126
MS.gene20692.t1 MTR_0137s0040 58.654 104 41 1 1 102 1 104 1.06e-31 119
MS.gene20692.t1 MTR_0291s0060 72.973 74 20 0 11 84 12 85 1.03e-28 109
MS.gene20692.t1 MTR_8g446020 32.212 208 100 4 80 247 50 256 1.10e-26 109
MS.gene20692.t1 MTR_6g090505 30.806 211 103 4 79 246 20 230 4.92e-25 107
MS.gene20692.t1 MTR_1g086270 79.245 53 11 0 301 353 1 53 8.90e-24 96.7
MS.gene20692.t1 MTR_5g039760 39.080 174 96 6 36 202 12 182 1.53e-23 98.6
MS.gene20692.t1 MTR_1g070355 27.309 249 139 7 29 241 67 309 2.13e-20 95.5
MS.gene20692.t1 MTR_1g083640 26.316 228 121 5 38 218 55 282 4.44e-18 85.1
MS.gene20692.t1 MTR_4g102720 34.286 140 84 3 34 173 7 138 1.29e-17 82.4
MS.gene20692.t1 MTR_4g067290 40.367 109 63 2 34 142 56 162 6.08e-17 80.9
MS.gene20692.t1 MTR_4g067290 40.367 109 63 2 34 142 56 162 6.38e-17 80.9
MS.gene20692.t1 MTR_4g067290 40.367 109 63 2 34 142 76 182 8.08e-17 80.9
MS.gene20692.t1 MTR_4g067290 40.367 109 63 2 34 142 74 180 8.38e-17 80.9
MS.gene20692.t1 MTR_4g067290 40.367 109 63 2 34 142 76 182 9.00e-17 80.9
MS.gene20692.t1 MTR_4g067290 40.367 109 63 2 34 142 116 222 1.32e-16 81.3
MS.gene20692.t1 MTR_2g098920 39.450 109 64 2 34 142 80 186 2.15e-16 79.7
MS.gene20692.t1 MTR_7g446520 28.279 244 129 5 38 252 92 318 8.97e-16 79.3
MS.gene20692.t1 MTR_3g006370 34.228 149 88 4 34 181 50 189 2.46e-15 75.9
MS.gene20692.t1 MTR_1g050985 62.712 59 19 1 104 159 39 97 2.86e-15 72.0
MS.gene20692.t1 MTR_7g061980 39.091 110 63 3 28 136 4 110 3.40e-15 72.4
MS.gene20692.t1 MTR_5g076070 25.847 236 129 9 37 235 56 282 5.34e-14 73.2
MS.gene20692.t1 MTR_7g446480 31.250 176 90 3 110 255 140 314 8.62e-14 73.2
MS.gene20692.t1 MTR_7g074790 35.065 154 86 5 34 176 10 160 1.12e-13 71.2
MS.gene20692.t1 MTR_1g091013 48.052 77 29 1 26 102 4 69 2.88e-13 65.5
MS.gene20692.t1 MTR_7g446510 30.682 176 91 3 110 255 155 329 9.26e-13 70.1
MS.gene20692.t1 MTR_5g045210 39.326 89 54 0 437 525 20 108 1.22e-12 67.4
MS.gene20692.t1 MTR_2g098880 37.037 108 65 2 34 139 61 167 3.04e-12 67.4
MS.gene20692.t1 MTR_2g098880 37.037 108 65 2 34 139 73 179 3.34e-12 67.4
MS.gene20692.t1 MTR_1g019850 33.071 127 78 2 14 140 50 169 1.15e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene20692.t1 AT4G38180 35.065 385 213 7 1 351 39 420 1.51e-70 242
MS.gene20692.t1 AT4G15090 30.612 343 208 4 34 347 51 392 4.58e-54 197
MS.gene20692.t1 AT4G15090 30.612 343 208 4 34 347 51 392 4.58e-54 197
MS.gene20692.t1 AT4G15090 30.612 343 208 4 34 347 51 392 4.58e-54 197
MS.gene20692.t1 AT4G15090 30.612 343 208 4 34 347 51 392 4.58e-54 197
MS.gene20692.t1 AT4G15090 30.612 343 208 4 34 347 51 392 4.58e-54 197
MS.gene20692.t1 AT3G22170 30.655 336 213 5 31 347 67 401 6.63e-51 188
MS.gene20692.t1 AT3G22170 30.655 336 213 5 31 347 67 401 6.63e-51 188
MS.gene20692.t1 AT1G76320 30.303 363 224 5 38 375 1 359 1.92e-48 179
MS.gene20692.t1 AT1G76320 30.303 363 224 5 38 375 1 359 5.35e-48 178
MS.gene20692.t1 AT1G76320 30.303 363 224 5 38 375 1 359 5.35e-48 178
MS.gene20692.t1 AT1G76320 30.303 363 224 5 38 375 1 359 5.73e-48 178
MS.gene20692.t1 AT3G06250 31.861 317 196 7 34 347 190 489 5.19e-47 176
MS.gene20692.t1 AT3G06250 31.861 317 196 7 34 347 190 489 5.19e-47 176
MS.gene20692.t1 AT3G06250 31.861 317 196 7 34 347 190 489 5.19e-47 176
MS.gene20692.t1 AT1G10240 31.161 353 201 8 2 321 25 368 2.37e-44 167
MS.gene20692.t1 AT1G10240 31.161 353 201 8 2 321 25 368 2.37e-44 167
MS.gene20692.t1 AT5G18960 30.000 340 213 9 14 347 193 513 3.38e-43 165
MS.gene20692.t1 AT5G18960 33.613 119 65 2 18 136 27 131 7.39e-13 72.0
MS.gene20692.t1 AT5G18960 30.000 340 213 9 14 347 193 513 3.38e-43 165
MS.gene20692.t1 AT5G18960 33.613 119 65 2 18 136 27 131 7.39e-13 72.0
MS.gene20692.t1 AT2G32250 29.167 312 204 5 37 347 41 336 4.23e-40 156
MS.gene20692.t1 AT2G32250 29.167 312 204 5 37 347 41 336 5.22e-40 155
MS.gene20692.t1 AT2G32250 29.167 312 204 5 37 347 41 336 5.22e-40 155
MS.gene20692.t1 AT2G32250 29.167 312 204 5 37 347 41 336 5.82e-40 155
MS.gene20692.t1 AT2G32250 29.167 312 204 5 37 347 41 336 5.82e-40 155
MS.gene20692.t1 AT2G32250 29.167 312 204 5 37 347 41 336 5.82e-40 155
MS.gene20692.t1 AT2G27110 29.855 345 205 9 26 351 41 367 7.00e-40 155
MS.gene20692.t1 AT2G27110 29.855 345 205 9 26 351 41 367 7.00e-40 155
MS.gene20692.t1 AT2G32250 28.939 311 204 5 38 347 1 295 3.78e-39 153
MS.gene20692.t1 AT2G32250 28.939 311 204 5 38 347 1 295 3.78e-39 153
MS.gene20692.t1 AT1G80010 28.075 374 224 6 19 353 80 447 7.29e-37 146
MS.gene20692.t1 AT2G27110 37.500 168 104 1 185 351 55 222 8.60e-34 137
MS.gene20692.t1 AT4G19990 29.195 298 187 6 37 319 24 312 1.73e-32 133
MS.gene20692.t1 AT4G19990 29.195 298 187 6 37 319 24 312 1.73e-32 133
MS.gene20692.t1 AT4G19990 29.195 298 187 6 37 319 24 312 2.84e-32 132
MS.gene20692.t1 AT4G19990 29.195 298 187 6 37 319 24 312 2.84e-32 132
MS.gene20692.t1 AT4G19990 29.195 298 187 6 37 319 38 326 3.10e-32 132
MS.gene20692.t1 AT4G19990 29.195 298 187 6 37 319 24 312 3.10e-32 132
MS.gene20692.t1 AT1G52520 28.710 310 194 6 33 321 84 387 2.38e-31 129
MS.gene20692.t1 AT5G28530 28.274 336 186 11 34 321 55 383 4.14e-31 129
MS.gene20692.t1 AT5G28530 28.274 336 186 11 34 321 55 383 4.14e-31 129
MS.gene20692.t1 AT5G28530 28.274 336 186 11 34 321 55 383 4.73e-31 128
MS.gene20692.t1 AT4G38170 34.545 165 102 3 185 347 21 181 1.10e-25 111
MS.gene20692.t1 AT4G19990 30.631 222 143 5 100 319 43 255 5.70e-24 107
MS.gene20692.t1 AT3G59470 40.367 109 63 2 34 142 70 176 9.37e-18 83.6
MS.gene20692.t1 AT3G59470 40.367 109 63 2 34 142 70 176 9.37e-18 83.6
MS.gene20692.t1 AT3G59470 40.367 109 63 2 34 142 82 188 1.14e-17 83.6
MS.gene20692.t1 AT3G07500 38.889 108 65 1 34 141 33 139 2.60e-15 75.9
MS.gene20692.t1 AT2G43280 32.000 150 99 3 34 182 22 169 8.28e-15 73.9
MS.gene20692.t1 AT4G12850 37.864 103 60 2 34 136 11 109 3.66e-12 64.7
MS.gene20692.t1 AT4G12850 37.864 103 60 2 34 136 11 109 4.79e-12 64.3
MS.gene20692.t1 AT4G12850 37.864 103 60 2 34 136 11 109 7.95e-12 64.7
MS.gene20692.t1 AT2G43280 32.031 128 84 3 49 175 2 127 4.62e-11 62.4

Find 88 sgRNAs with CRISPR-Local

Find 143 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCTAATAACAAATATATTT+TGG 0.090860 1.2:+66809885 MS.gene20692:CDS
TATCAAGATACTTGCATAAA+AGG 0.217633 1.2:+66810709 MS.gene20692:CDS
TTCCAGATTGTGTCGATAAA+TGG 0.224458 1.2:+66809194 MS.gene20692:CDS
TTCATCATTCGCAATTGATA+TGG 0.254192 1.2:-66811182 None:intergenic
ACGCGCTGTGCATCTTGTTC+TGG 0.276753 1.2:-66809488 None:intergenic
TTTGGTATTCGTCGAGAATA+TGG 0.287007 1.2:+66809352 MS.gene20692:CDS
CTTTAGTGATTGCTTCCTTT+TGG 0.296517 1.2:-66809774 None:intergenic
GCACAGATGATTAATGATTA+TGG 0.297180 1.2:+66809914 MS.gene20692:CDS
CATTGTACCGCTTCGTGAAA+TGG 0.311161 1.2:-66811000 None:intergenic
AATGATTATAGTAAAAGAAT+TGG 0.319753 1.2:+66809328 MS.gene20692:CDS
CATTTCATGGATTGTGCACT+TGG 0.334162 1.2:+66810197 MS.gene20692:CDS
TAAGCAAATTCTTAAGGTCT+TGG 0.340024 1.2:-66809748 None:intergenic
CACCACTTACAAGACAAATA+AGG 0.342570 1.2:+66809964 MS.gene20692:CDS
TATAGTAAAAGAATTGGATT+TGG 0.342872 1.2:+66809334 MS.gene20692:CDS
GGAAATAAAAGCAGAATAGA+TGG 0.346513 1.2:+66809373 MS.gene20692:CDS
ACCCATTTATCGACACAATC+TGG 0.348105 1.2:-66809196 None:intergenic
CGACCTTTGGGTGTATTTGT+TGG 0.350273 1.2:+66809992 MS.gene20692:CDS
AAAGAGTTCGCGATTCCGTT+TGG 0.365271 1.2:+66810264 MS.gene20692:CDS
AAATAAGGATTATCGACCTT+TGG 0.372421 1.2:+66809979 MS.gene20692:CDS
GTTGGACTCTTCATAAACTT+TGG 0.396971 1.2:-66811092 None:intergenic
TCGAAAGATAGGGAAATATA+AGG 0.398025 1.2:+66809528 MS.gene20692:CDS
CTCTACCCCACCAGCTTGCT+TGG 0.401329 1.2:-66809708 None:intergenic
AGCTCAACATAACCACCTTC+TGG 0.403395 1.2:+66809564 MS.gene20692:CDS
AATAAGGATTATCGACCTTT+GGG 0.412280 1.2:+66809980 MS.gene20692:CDS
ATCCTTATTTGTCTTGTAAG+TGG 0.412387 1.2:-66809966 None:intergenic
TGCCAATAGTGGACCTCACT+TGG 0.426768 1.2:+66809264 MS.gene20692:CDS
ATATAAGACAGAATGCTCTT+AGG 0.429523 1.2:+66810221 MS.gene20692:CDS
ATTAATGATTATGGATACTT+TGG 0.430083 1.2:+66809923 MS.gene20692:CDS
ATTGTACCGCTTCGTGAAAT+GGG 0.431951 1.2:-66810999 None:intergenic
TCCCAAGTGAGGTCCACTAT+TGG 0.441740 1.2:-66809266 None:intergenic
ATTTGGAGTGTAAACATTTG+CGG 0.445050 1.2:-66810653 None:intergenic
TCCAGATTGTGTCGATAAAT+GGG 0.451957 1.2:+66809195 MS.gene20692:CDS
TGAAAATCATAAAAGAATGA+TGG 0.460102 1.2:-66809848 None:intergenic
ATGGACAAGAGATGCAAGGC+TGG 0.468317 1.2:+66810928 MS.gene20692:CDS
ATATATTGATGCAATTCTCT+TGG 0.468772 1.2:-66809683 None:intergenic
AGAATTTGCTTAAAACCAAA+AGG 0.473219 1.2:+66809759 MS.gene20692:CDS
TTGTTTGAAATATGTCATCA+AGG 0.487222 1.2:-66809813 None:intergenic
AAAGGGATGTCAATGCTAAA+CGG 0.487954 1.2:+66810548 MS.gene20692:intron
AACAAGATGCACAGCGCGTA+TGG 0.489143 1.2:+66809492 MS.gene20692:CDS
GGCAAAATGCATAAAGATGA+AGG 0.490221 1.2:+66811234 MS.gene20692:CDS
GCATAAAAGGAGGTGAAAGA+AGG 0.500971 1.2:+66810722 MS.gene20692:CDS
TTGTTGGACTTAATAATCAC+AGG 0.504151 1.2:+66810008 MS.gene20692:CDS
AAGGAAAGTATTGCCAATAG+TGG 0.510684 1.2:+66809253 MS.gene20692:CDS
GCCTAAATTGAAAATGAAGA+AGG 0.516431 1.2:+66810612 MS.gene20692:CDS
GAAGTAATCAAGGTTGGAGT+GGG 0.524671 1.2:+66810951 MS.gene20692:CDS
GCAGTTTGAATCCGAGGCAG+TGG 0.528643 1.2:+66809291 MS.gene20692:CDS
AACACTACATACTAAAACGA+TGG 0.530470 1.2:+66810909 MS.gene20692:CDS
GCAAGGCTGGGAAGTAATCA+AGG 0.534455 1.2:+66810941 MS.gene20692:CDS
AATGGGCATAGGCTTATGTT+CGG 0.534485 1.2:+66810413 MS.gene20692:CDS
GGCTGGGAAGTAATCAAGGT+TGG 0.541437 1.2:+66810945 MS.gene20692:CDS
ATCACTAAAGTACGGTGAAG+TGG 0.545460 1.2:+66809787 MS.gene20692:CDS
TGCATGCTTCAAAATCCAAA+CGG 0.549062 1.2:-66810279 None:intergenic
GTTCGGAAAACATTCACGGC+AGG 0.564623 1.2:+66810430 MS.gene20692:CDS
TCACTAAAGTACGGTGAAGT+GGG 0.566903 1.2:+66809788 MS.gene20692:CDS
GCCAATAGTGGACCTCACTT+GGG 0.571514 1.2:+66809265 MS.gene20692:CDS
AACAGATCAAGATGCAGCAA+TGG 0.573110 1.2:+66810144 MS.gene20692:CDS
TATATATCCAAGCAAGCTGG+TGG 0.573855 1.2:+66809701 MS.gene20692:CDS
CAACATAGACACCGTTGGCA+AGG 0.578457 1.2:+66811213 MS.gene20692:CDS
TTATGTTCGGAAAACATTCA+CGG 0.579961 1.2:+66810426 MS.gene20692:CDS
TGGACAAGAGATGCAAGGCT+GGG 0.580811 1.2:+66810929 MS.gene20692:CDS
GTAATCAAGGTTGGAGTGGG+AGG 0.581542 1.2:+66810954 MS.gene20692:CDS
AGGAAGCAATCACTAAAGTA+CGG 0.581592 1.2:+66809779 MS.gene20692:CDS
CAATATATATCCAAGCAAGC+TGG 0.584632 1.2:+66809698 MS.gene20692:CDS
TATATCCAAGCAAGCTGGTG+GGG 0.587725 1.2:+66809703 MS.gene20692:CDS
GGATGGAGAATCAAGTGGAA+TGG 0.591122 1.2:+66811150 MS.gene20692:CDS
AAATTCATATGCCACTGCCT+CGG 0.591670 1.2:-66809302 None:intergenic
GGGAATGCAGTTTGAATCCG+AGG 0.592957 1.2:+66809285 MS.gene20692:CDS
GGAAGTAATCAAGGTTGGAG+TGG 0.603856 1.2:+66810950 MS.gene20692:CDS
TTGTTCAATTTAAGCAACTG+AGG 0.613906 1.2:-66811031 None:intergenic
TCTGCTCTAGACTCCGCCGT+CGG 0.614843 1.2:-66809463 None:intergenic
AACGATGGACAAGAGATGCA+AGG 0.621531 1.2:+66810924 MS.gene20692:CDS
GCTGGTGGGGTAGAGACTGT+CGG 0.623303 1.2:+66809716 MS.gene20692:CDS
CAAGATACTTGCATAAAAGG+AGG 0.623387 1.2:+66810712 MS.gene20692:CDS
ATATATCCAAGCAAGCTGGT+GGG 0.631572 1.2:+66809702 MS.gene20692:CDS
AGTCCAACAAATACACCCAA+AGG 0.632966 1.2:-66809995 None:intergenic
ACAAAATGTTCATCACGAGA+AGG 0.633388 1.2:+66809234 MS.gene20692:CDS
AAGATTCACATGCTTCAAAG+AGG 0.641966 1.2:+66809411 MS.gene20692:CDS
GACAACAACATAGACACCGT+TGG 0.650357 1.2:+66811208 MS.gene20692:CDS
AGATTCACATGCTTCAAAGA+GGG 0.653445 1.2:+66809412 MS.gene20692:CDS
TCAAACTGCATTCCCAAGTG+AGG 0.657944 1.2:-66809277 None:intergenic
CATACTCAGGTGGAACCAGA+AGG 0.658672 1.2:-66809579 None:intergenic
ATCATATGAACATACTCAGG+TGG 0.661801 1.2:-66809589 None:intergenic
TGACAAAAGACGTCAACCGA+CGG 0.667263 1.2:+66809447 MS.gene20692:CDS
ATGCATAGATCTAGACGAGG+AGG 0.680659 1.2:+66810297 MS.gene20692:CDS
TATCTGGATGGAGAATCAAG+TGG 0.685001 1.2:+66811145 MS.gene20692:CDS
ACTCAGGTGGAACCAGAAGG+TGG 0.690819 1.2:-66809576 None:intergenic
CAAAAGACGTCAACCGACGG+CGG 0.706901 1.2:+66809450 MS.gene20692:CDS
AGCATGCATAGATCTAGACG+AGG 0.752852 1.2:+66810294 MS.gene20692:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATGATTATAGTAAAAGAAT+TGG + chr1.2:66809328-66809347 MS.gene20692:CDS 15.0%
!!! AATTTTTTACTCACTTTAAA+AGG + chr1.2:66810530-66810549 MS.gene20692:intron 15.0%
!!! AGCTAATAACAAATATATTT+TGG + chr1.2:66809885-66809904 MS.gene20692:CDS 15.0%
!!! ATTCTTTTATGATTTTCAAA+TGG + chr1.2:66809853-66809872 MS.gene20692:CDS 15.0%
!!! ATTTTTTACTCACTTTAAAA+GGG + chr1.2:66810531-66810550 MS.gene20692:intron 15.0%
!!! GCTAATAACAAATATATTTT+GGG + chr1.2:66809886-66809905 MS.gene20692:CDS 15.0%
!!! TTTTAAATTGAAGGAAAAAT+GGG + chr1.2:66810396-66810415 MS.gene20692:intron 15.0%
!!! TTTTTAAATTGAAGGAAAAA+TGG + chr1.2:66810395-66810414 MS.gene20692:intron 15.0%
!! AATTTATATCTGACTTCAAA+TGG - chr1.2:66810504-66810523 None:intergenic 20.0%
!! ATTAATGATTATGGATACTT+TGG + chr1.2:66809923-66809942 MS.gene20692:CDS 20.0%
!! TATAGTAAAAGAATTGGATT+TGG + chr1.2:66809334-66809353 MS.gene20692:CDS 20.0%
!! TGAAAATCATAAAAGAATGA+TGG - chr1.2:66809851-66809870 None:intergenic 20.0%
!! TGAAATTCCTCAAAAAAATT+TGG - chr1.2:66810673-66810692 None:intergenic 20.0%
!!! AAAGTGAATTTTTGAATGAA+TGG + chr1.2:66810320-66810339 MS.gene20692:intron 20.0%
!!! AATAACAAATATATTTTGGG+CGG + chr1.2:66809889-66809908 MS.gene20692:CDS 20.0%
!!! CATATCATTAACTATTTTGT+TGG - chr1.2:66811113-66811132 None:intergenic 20.0%
!!! GCATTCAATTTTTAAATTGA+AGG + chr1.2:66810387-66810406 MS.gene20692:intron 20.0%
!!! TTTGAAGTCAGATATAAATT+TGG + chr1.2:66810504-66810523 MS.gene20692:intron 20.0%
! ATATATTGATGCAATTCTCT+TGG - chr1.2:66809686-66809705 None:intergenic 25.0%
! TATCAAGATACTTGCATAAA+AGG + chr1.2:66810709-66810728 MS.gene20692:CDS 25.0%
! TATGTTGTCCAAAAAATATC+TGG + chr1.2:66811129-66811148 MS.gene20692:CDS 25.0%
!! AGAATTTGCTTAAAACCAAA+AGG + chr1.2:66809759-66809778 MS.gene20692:CDS 25.0%
!! ATTTTACTTGATCGAAAGAT+AGG + chr1.2:66809517-66809536 MS.gene20692:CDS 25.0%
!! CACAAATTATGATAATGCAA+AGG + chr1.2:66810757-66810776 MS.gene20692:intron 25.0%
!! TGATCTGTTAGAATTGTTTT+AGG - chr1.2:66810133-66810152 None:intergenic 25.0%
!! TTGTTTGAAATATGTCATCA+AGG - chr1.2:66809816-66809835 None:intergenic 25.0%
!! TTTTACTTGATCGAAAGATA+GGG + chr1.2:66809518-66809537 MS.gene20692:CDS 25.0%
!!! ATAATGTTTTGAAAGATTCG+TGG + chr1.2:66810362-66810381 MS.gene20692:intron 25.0%
!!! TGGTTTTAAGCAAATTCTTA+AGG - chr1.2:66809757-66809776 None:intergenic 25.0%
!!! TTACACTCCAAATTTTTTTG+AGG + chr1.2:66810663-66810682 MS.gene20692:CDS 25.0%
!!! TTTTTTTGAGGAATTTCAAG+AGG + chr1.2:66810675-66810694 MS.gene20692:CDS 25.0%
AAATAAGGATTATCGACCTT+TGG + chr1.2:66809979-66809998 MS.gene20692:CDS 30.0%
AACACTACATACTAAAACGA+TGG + chr1.2:66810909-66810928 MS.gene20692:CDS 30.0%
AATAAGGATTATCGACCTTT+GGG + chr1.2:66809980-66809999 MS.gene20692:CDS 30.0%
AGAATCATATGAACATACTC+AGG - chr1.2:66809595-66809614 None:intergenic 30.0%
ATATAAGACAGAATGCTCTT+AGG + chr1.2:66810221-66810240 MS.gene20692:CDS 30.0%
GCACAGATGATTAATGATTA+TGG + chr1.2:66809914-66809933 MS.gene20692:CDS 30.0%
GCCTAAATTGAAAATGAAGA+AGG + chr1.2:66810612-66810631 MS.gene20692:CDS 30.0%
GGAAATAAAAGCAGAATAGA+TGG + chr1.2:66809373-66809392 MS.gene20692:CDS 30.0%
GTTATGCCAAAAACATTTCA+TGG + chr1.2:66810184-66810203 MS.gene20692:CDS 30.0%
TAAGCAAATTCTTAAGGTCT+TGG - chr1.2:66809751-66809770 None:intergenic 30.0%
TCGAAAGATAGGGAAATATA+AGG + chr1.2:66809528-66809547 MS.gene20692:CDS 30.0%
TTATGTTCGGAAAACATTCA+CGG + chr1.2:66810426-66810445 MS.gene20692:CDS 30.0%
TTCATCATTCGCAATTGATA+TGG - chr1.2:66811185-66811204 None:intergenic 30.0%
TTGTCCAAAAAATATCTGGA+TGG + chr1.2:66811133-66811152 MS.gene20692:CDS 30.0%
TTGTTCAATTTAAGCAACTG+AGG - chr1.2:66811034-66811053 None:intergenic 30.0%
TTGTTGGACTTAATAATCAC+AGG + chr1.2:66810008-66810027 MS.gene20692:CDS 30.0%
! AAACAATTCGTTCTTTTCAG+TGG + chr1.2:66810068-66810087 MS.gene20692:CDS 30.0%
! ATCCTTATTTGTCTTGTAAG+TGG - chr1.2:66809969-66809988 None:intergenic 30.0%
! ATTTGGAGTGTAAACATTTG+CGG - chr1.2:66810656-66810675 None:intergenic 30.0%
! CAAGAAACTTTTTGTTCCAT+AGG - chr1.2:66810803-66810822 None:intergenic 30.0%
! CACAATCCATGAAATGTTTT+TGG - chr1.2:66810193-66810212 None:intergenic 30.0%
! GCCTTCTTCATTTTCAATTT+AGG - chr1.2:66810616-66810635 None:intergenic 30.0%
!! TCGTTTTAGTATGTAGTGTT+CGG - chr1.2:66810909-66810928 None:intergenic 30.0%
!!! TTCTCCATCCAGATATTTTT+TGG - chr1.2:66811140-66811159 None:intergenic 30.0%
AAAGGGATGTCAATGCTAAA+CGG + chr1.2:66810548-66810567 MS.gene20692:intron 35.0%
AAGATTCACATGCTTCAAAG+AGG + chr1.2:66809411-66809430 MS.gene20692:CDS 35.0%
ACAAAATGTTCATCACGAGA+AGG + chr1.2:66809234-66809253 MS.gene20692:CDS 35.0%
ACAAGCATCACAAATTGTCT+TGG + chr1.2:66809640-66809659 MS.gene20692:intron 35.0%
AGATTCACATGCTTCAAAGA+GGG + chr1.2:66809412-66809431 MS.gene20692:CDS 35.0%
AGGAAGCAATCACTAAAGTA+CGG + chr1.2:66809779-66809798 MS.gene20692:CDS 35.0%
ATCATATGAACATACTCAGG+TGG - chr1.2:66809592-66809611 None:intergenic 35.0%
ATTGAAGGAAAAATGGGCAT+AGG + chr1.2:66810402-66810421 MS.gene20692:intron 35.0%
CAAGATACTTGCATAAAAGG+AGG + chr1.2:66810712-66810731 MS.gene20692:CDS 35.0%
CAAGCATCACAAATTGTCTT+GGG + chr1.2:66809641-66809660 MS.gene20692:intron 35.0%
CAATATATATCCAAGCAAGC+TGG + chr1.2:66809698-66809717 MS.gene20692:CDS 35.0%
CACCACTTACAAGACAAATA+AGG + chr1.2:66809964-66809983 MS.gene20692:CDS 35.0%
GGCAAAATGCATAAAGATGA+AGG + chr1.2:66811234-66811253 MS.gene20692:CDS 35.0%
GTTGGACTCTTCATAAACTT+TGG - chr1.2:66811095-66811114 None:intergenic 35.0%
TGCATGCTTCAAAATCCAAA+CGG - chr1.2:66810282-66810301 None:intergenic 35.0%
TTTGGTATTCGTCGAGAATA+TGG + chr1.2:66809352-66809371 MS.gene20692:CDS 35.0%
! CGTGATGAACATTTTGTTCA+TGG - chr1.2:66809231-66809250 None:intergenic 35.0%
! CTTTAGTGATTGCTTCCTTT+TGG - chr1.2:66809777-66809796 None:intergenic 35.0%
! GCGAACTCTTTTGATATAGA+TGG - chr1.2:66810255-66810274 None:intergenic 35.0%
! TCCAGATTGTGTCGATAAAT+GGG + chr1.2:66809195-66809214 MS.gene20692:CDS 35.0%
! TCCTATCGACACATATTTTG+AGG + chr1.2:66809616-66809635 MS.gene20692:intron 35.0%
! TGATAATGCAAAGGAGAAGA+TGG + chr1.2:66810766-66810785 MS.gene20692:intron 35.0%
! TGTCGTAAATTTGAGACACA+TGG + chr1.2:66810827-66810846 MS.gene20692:intron 35.0%
! TTCCAGATTGTGTCGATAAA+TGG + chr1.2:66809194-66809213 MS.gene20692:CDS 35.0%
!! AAGGAAAGTATTGCCAATAG+TGG + chr1.2:66809253-66809272 MS.gene20692:CDS 35.0%
!! CGTTTTAGTATGTAGTGTTC+GGG - chr1.2:66810908-66810927 None:intergenic 35.0%
!! GAAACTTTTCTGAAAGCAGT+GGG + chr1.2:66810097-66810116 MS.gene20692:CDS 35.0%
!! TGAAACTTTTCTGAAAGCAG+TGG + chr1.2:66810096-66810115 MS.gene20692:CDS 35.0%
AAAAAGCCCATTTCACGAAG+CGG + chr1.2:66810993-66811012 MS.gene20692:CDS 40.0%
AAATTCATATGCCACTGCCT+CGG - chr1.2:66809305-66809324 None:intergenic 40.0%
AACAGATCAAGATGCAGCAA+TGG + chr1.2:66810144-66810163 MS.gene20692:CDS 40.0%
AATGGGCATAGGCTTATGTT+CGG + chr1.2:66810413-66810432 MS.gene20692:CDS 40.0%
ACCCATTTATCGACACAATC+TGG - chr1.2:66809199-66809218 None:intergenic 40.0%
AGTCCAACAAATACACCCAA+AGG - chr1.2:66809998-66810017 None:intergenic 40.0%
ATATATCCAAGCAAGCTGGT+GGG + chr1.2:66809702-66809721 MS.gene20692:CDS 40.0%
ATCACTAAAGTACGGTGAAG+TGG + chr1.2:66809787-66809806 MS.gene20692:CDS 40.0%
ATTGTACCGCTTCGTGAAAT+GGG - chr1.2:66811002-66811021 None:intergenic 40.0%
ATTGTCTTGGGAGATGAATC+TGG + chr1.2:66809653-66809672 MS.gene20692:intron 40.0%
CAATGTTGCCCCAAAAATGA+CGG - chr1.2:66810038-66810057 None:intergenic 40.0%
GAAGTAATCAAGGTTGGAGT+GGG + chr1.2:66810951-66810970 MS.gene20692:CDS 40.0%
GCAAAGGAGAAGATGGTAAT+GGG + chr1.2:66810773-66810792 MS.gene20692:intron 40.0%
GCATAAAAGGAGGTGAAAGA+AGG + chr1.2:66810722-66810741 MS.gene20692:CDS 40.0%
TATATATCCAAGCAAGCTGG+TGG + chr1.2:66809701-66809720 MS.gene20692:CDS 40.0%
TATCTGGATGGAGAATCAAG+TGG + chr1.2:66811145-66811164 MS.gene20692:CDS 40.0%
TCACTAAAGTACGGTGAAGT+GGG + chr1.2:66809788-66809807 MS.gene20692:CDS 40.0%
TGCAAAGGAGAAGATGGTAA+TGG + chr1.2:66810772-66810791 MS.gene20692:intron 40.0%
! CATTTCATGGATTGTGCACT+TGG + chr1.2:66810197-66810216 MS.gene20692:CDS 40.0%
! GCCTCAAAATATGTGTCGAT+AGG - chr1.2:66809620-66809639 None:intergenic 40.0%
! TATGCATTTTGCCTTGCCAA+CGG - chr1.2:66811227-66811246 None:intergenic 40.0%
!! GATGGTAATGGGAAATCCTA+TGG + chr1.2:66810784-66810803 MS.gene20692:intron 40.0%
!!! ACAGGCAAACCGTCATTTTT+GGG + chr1.2:66810026-66810045 MS.gene20692:CDS 40.0%
AAAGAGTTCGCGATTCCGTT+TGG + chr1.2:66810264-66810283 MS.gene20692:CDS 45.0%
AACGATGGACAAGAGATGCA+AGG + chr1.2:66810924-66810943 MS.gene20692:CDS 45.0%
AGCATGCATAGATCTAGACG+AGG + chr1.2:66810294-66810313 MS.gene20692:CDS 45.0%
AGCTCAACATAACCACCTTC+TGG + chr1.2:66809564-66809583 MS.gene20692:CDS 45.0%
ATGCATAGATCTAGACGAGG+AGG + chr1.2:66810297-66810316 MS.gene20692:CDS 45.0%
CATTGTACCGCTTCGTGAAA+TGG - chr1.2:66811003-66811022 None:intergenic 45.0%
CGACCTTTGGGTGTATTTGT+TGG + chr1.2:66809992-66810011 MS.gene20692:CDS 45.0%
GACAACAACATAGACACCGT+TGG + chr1.2:66811208-66811227 MS.gene20692:CDS 45.0%
GGAAGTAATCAAGGTTGGAG+TGG + chr1.2:66810950-66810969 MS.gene20692:CDS 45.0%
GGATGGAGAATCAAGTGGAA+TGG + chr1.2:66811150-66811169 MS.gene20692:CDS 45.0%
TATATCCAAGCAAGCTGGTG+GGG + chr1.2:66809703-66809722 MS.gene20692:CDS 45.0%
TCAAACTGCATTCCCAAGTG+AGG - chr1.2:66809280-66809299 None:intergenic 45.0%
TGACAAAAGACGTCAACCGA+CGG + chr1.2:66809447-66809466 MS.gene20692:CDS 45.0%
!! ACTTTTCTGAAAGCAGTGGG+TGG + chr1.2:66810100-66810119 MS.gene20692:CDS 45.0%
!! CACAGGCAAACCGTCATTTT+TGG + chr1.2:66810025-66810044 MS.gene20692:CDS 45.0%
!! GCTTCGTGAAATGGGCTTTT+TGG - chr1.2:66810994-66811013 None:intergenic 45.0%
!!! CAGGCAAACCGTCATTTTTG+GGG + chr1.2:66810027-66810046 MS.gene20692:CDS 45.0%
AACAAGATGCACAGCGCGTA+TGG + chr1.2:66809492-66809511 MS.gene20692:CDS 50.0%
ATGGACAAGAGATGCAAGGC+TGG + chr1.2:66810928-66810947 MS.gene20692:CDS 50.0%
CAACATAGACACCGTTGGCA+AGG + chr1.2:66811213-66811232 MS.gene20692:CDS 50.0%
CATACTCAGGTGGAACCAGA+AGG - chr1.2:66809582-66809601 None:intergenic 50.0%
GCAAGGCTGGGAAGTAATCA+AGG + chr1.2:66810941-66810960 MS.gene20692:CDS 50.0%
GGCTGGGAAGTAATCAAGGT+TGG + chr1.2:66810945-66810964 MS.gene20692:CDS 50.0%
GGGAATGCAGTTTGAATCCG+AGG + chr1.2:66809285-66809304 MS.gene20692:CDS 50.0%
GTAATCAAGGTTGGAGTGGG+AGG + chr1.2:66810954-66810973 MS.gene20692:CDS 50.0%
GTTCGGAAAACATTCACGGC+AGG + chr1.2:66810430-66810449 MS.gene20692:CDS 50.0%
TCCCAAGTGAGGTCCACTAT+TGG - chr1.2:66809269-66809288 None:intergenic 50.0%
TGGACAAGAGATGCAAGGCT+GGG + chr1.2:66810929-66810948 MS.gene20692:CDS 50.0%
!! GCCAATAGTGGACCTCACTT+GGG + chr1.2:66809265-66809284 MS.gene20692:CDS 50.0%
!! TGCCAATAGTGGACCTCACT+TGG + chr1.2:66809264-66809283 MS.gene20692:CDS 50.0%
ACGCGCTGTGCATCTTGTTC+TGG - chr1.2:66809491-66809510 None:intergenic 55.0%
ACTCAGGTGGAACCAGAAGG+TGG - chr1.2:66809579-66809598 None:intergenic 55.0%
CAAAAGACGTCAACCGACGG+CGG + chr1.2:66809450-66809469 MS.gene20692:CDS 55.0%
GCAGTTTGAATCCGAGGCAG+TGG + chr1.2:66809291-66809310 MS.gene20692:CDS 55.0%
GCTGGTGGGGTAGAGACTGT+CGG + chr1.2:66809716-66809735 MS.gene20692:CDS 60.0%
! CTCTACCCCACCAGCTTGCT+TGG - chr1.2:66809711-66809730 None:intergenic 60.0%
! TCTGCTCTAGACTCCGCCGT+CGG - chr1.2:66809466-66809485 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 66809178 66811270 66809178 ID=MS.gene20692
chr1.2 mRNA 66809178 66811270 66809178 ID=MS.gene20692.t1;Parent=MS.gene20692
chr1.2 exon 66809178 66809596 66809178 ID=MS.gene20692.t1.exon1;Parent=MS.gene20692.t1
chr1.2 CDS 66809178 66809596 66809178 ID=cds.MS.gene20692.t1;Parent=MS.gene20692.t1
chr1.2 exon 66809682 66810322 66809682 ID=MS.gene20692.t1.exon2;Parent=MS.gene20692.t1
chr1.2 CDS 66809682 66810322 66809682 ID=cds.MS.gene20692.t1;Parent=MS.gene20692.t1
chr1.2 exon 66810409 66810451 66810409 ID=MS.gene20692.t1.exon3;Parent=MS.gene20692.t1
chr1.2 CDS 66810409 66810451 66810409 ID=cds.MS.gene20692.t1;Parent=MS.gene20692.t1
chr1.2 exon 66810552 66810743 66810552 ID=MS.gene20692.t1.exon4;Parent=MS.gene20692.t1
chr1.2 CDS 66810552 66810743 66810552 ID=cds.MS.gene20692.t1;Parent=MS.gene20692.t1
chr1.2 exon 66810862 66811270 66810862 ID=MS.gene20692.t1.exon5;Parent=MS.gene20692.t1
chr1.2 CDS 66810862 66811270 66810862 ID=cds.MS.gene20692.t1;Parent=MS.gene20692.t1
Gene Sequence

>MS.gene20692

ATGGATTCATCATCAATTCCAGATTGTGTCGATAAATGGGTGAACAATATCCATGAACAAAATGTTCATCACGAGAAGGAAAGTATTGCCAATAGTGGACCTCACTTGGGAATGCAGTTTGAATCCGAGGCAGTGGCATATGAATTTTATAATGATTATAGTAAAAGAATTGGATTTGGTATTCGTCGAGAATATGGAAATAAAAGCAGAATAGATGGATTTTTGACTTCGAGAAGATTCACATGCTTCAAAGAGGGTGCGCAAGTTGTTGACAAAAGACGTCAACCGACGGCGGAGTCTAGAGCAGAAACCAGAACAAGATGCACAGCGCGTATGGTTATTTTACTTGATCGAAAGATAGGGAAATATAAGGTTGTTGACTTTGAAGCTCAACATAACCACCTTCTGGTTCCACCTGAGTATGTTCATATGATTCTCTCCTATCGACACATATTTTGAGGCACAAGCATCACAAATTGTCTTGGGAGATGAATCTGGCTTAAGACCAAGAGAATTGCATCAATATATATCCAAGCAAGCTGGTGGGGTAGAGACTGTCGGTTTTACAAGCCAAGACCTTAAGAATTTGCTTAAAACCAAAAGGAAGCAATCACTAAAGTACGGTGAAGTGGGTGCCTTGATGACATATTTCAAACAAGAAAGTGAAAATCCATCATTCTTTTATGATTTTCAAATGGATGTTGATGAGCTAATAACAAATATATTTTGGGCGGATGCACAGATGATTAATGATTATGGATACTTTGGTGATATCATCACTTTTGACACCACTTACAAGACAAATAAGGATTATCGACCTTTGGGTGTATTTGTTGGACTTAATAATCACAGGCAAACCGTCATTTTTGGGGCAACATTGTTATATGATGAAACAATTCGTTCTTTTCAGTGGTTATTTGAAACTTTTCTGAAAGCAGTGGGTGGAGAAAAGCCTAAAACAATTCTAACAGATCAAGATGCAGCAATGGCTACAGCTATTTCTTTAGTTATGCCAAAAACATTTCATGGATTGTGCACTTGGCATATAAGACAGAATGCTCTTAGGCATGTGAACCATCTATATCAAAAGAGTTCGCGATTCCGTTTGGATTTTGAAGCATGCATAGATCTAGACGAGGAGGAAAGTGAATTTTTGAATGAATGGAATTCTTTACTTGTTGATCATAATGTTTTGAAAGATTCGTGGTTGCATTCAATTTTTAAATTGAAGGAAAAATGGGCATAGGCTTATGTTCGGAAAACATTCACGGCAGGTATGCGATCTACTCAATTAAGTGAGAGCTTTAATGCTGATTTGAAAAACCATTTGAAGTCAGATATAAATTTGGTACAATTTTTTACTCACTTTAAAAGGGATGTCAATGCTAAACGGAACAATGAGTCAAAAGCAGAATATGATTCAAGACATAAGCTGCCTAAATTGAAAATGAAGAAGGCTCGCATGCTCTTACAAGCCGCAAATGTTTACACTCCAAATTTTTTTGAGGAATTTCAAGAGGAATATGAAGAATATCAAGATACTTGCATAAAAGGAGGTGAAAGAAGGTTTGTATGTTGTCACAAATTATGATAATGCAAAGGAGAAGATGGTAATGGGAAATCCTATGGAACAAAAAGTTTCTTGTGATTGTCGTAAATTTGAGACACATGGCATCTTATGTAGTCATGCTTTGAAAGTTTTAGATGTCATGAACATTAAGTTAATTCCCGAACACTACATACTAAAACGATGGACAAGAGATGCAAGGCTGGGAAGTAATCAAGGTTGGAGTGGGAGGCATGTTGAATTAGACCAAAAAGCCCATTTCACGAAGCGGTACAATGAGTTATGTCCTCAGTTGCTTAAATTGAACAATAGAGCTTCAGAATCTCATGAAACTTTTACATTTTTGTCCAAAGTTTATGAAGAGTCCAACAAAATAGTTAATGATATGTTGTCCAAAAAATATCTGGATGGAGAATCAAGTGGAATGGTTCATGTATCCATATCAATTGCGAATGATGAAGTCGACAACAACATAGACACCGTTGGCAAGGCAAAATGCATAAAGATGAAGGATTGTCCACGTTAG
Protein sequence

>MS.gene20692.t1

MDSSSIPDCVDKWVNNIHEQNVHHEKESIANSGPHLGMQFESEAVAYEFYNDYSKRIGFGIRREYGNKSRIDGFLTSRRFTCFKEGAQVVDKRRQPTAESRAETRTRCTARMVILLDRKIGKYKVVDFEAQHNHLLVPPEPRELHQYISKQAGGVETVGFTSQDLKNLLKTKRKQSLKYGEVGALMTYFKQESENPSFFYDFQMDVDELITNIFWADAQMINDYGYFGDIITFDTTYKTNKDYRPLGVFVGLNNHRQTVIFGATLLYDETIRSFQWLFETFLKAVGGEKPKTILTDQDAAMATAISLVMPKTFHGLCTWHIRQNALRHVNHLYQKSSRFRLDFEACIDLDEEERKMGIGLCSENIHGRDVNAKRNNESKAEYDSRHKLPKLKMKKARMLLQAANVYTPNFFEEFQEEYEEYQDTCIKGGERSHALKVLDVMNIKLIPEHYILKRWTRDARLGSNQGWSGRHVELDQKAHFTKRYNELCPQLLKLNNRASESHETFTFLSKVYEESNKIVNDMLSKKYLDGESSGMVHVSISIANDEVDNNIDTVGKAKCIKMKDCPR