AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene20800

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene20800.t1 MTR_1g087140 96.102 1103 38 4 7 1105 1 1102 0.0 2178
MS.gene20800.t1 MTR_1g090850 61.706 1102 348 20 10 1096 3 1045 0.0 1222
MS.gene20800.t1 MTR_8g075340 29.529 552 338 17 148 674 210 735 1.36e-43 173
MS.gene20800.t1 MTR_8g075340 31.658 199 111 7 912 1087 957 1153 1.78e-16 85.5
MS.gene20800.t1 MTR_5g022470 28.265 559 329 16 152 674 251 773 2.17e-42 169
MS.gene20800.t1 MTR_5g022470 34.483 145 71 4 966 1087 1040 1183 4.42e-16 84.3
MS.gene20800.t1 MTR_5g022470 28.265 559 329 16 152 674 251 773 2.41e-42 169
MS.gene20800.t1 MTR_8g019680 64.948 97 29 2 1002 1096 53 146 1.15e-35 133
MS.gene20800.t1 MTR_8g080770 28.571 406 221 13 383 770 272 626 1.35e-30 130
MS.gene20800.t1 MTR_8g080770 32.609 138 69 6 973 1097 729 855 1.88e-13 75.5
MS.gene20800.t1 MTR_8g080770 28.571 406 221 13 383 770 381 735 2.76e-30 130
MS.gene20800.t1 MTR_8g080770 32.609 138 69 6 973 1097 838 964 1.94e-13 75.5
MS.gene20800.t1 MTR_3g085130 28.193 415 235 16 299 678 134 520 2.06e-29 127
MS.gene20800.t1 MTR_3g085130 33.577 137 68 6 973 1097 693 818 4.19e-14 77.4
MS.gene20800.t1 MTR_3g085130 30.255 314 176 12 386 678 439 730 1.09e-28 125
MS.gene20800.t1 MTR_3g085130 32.716 162 83 8 948 1097 881 1028 4.25e-14 77.8
MS.gene20800.t1 MTR_5g097410 26.389 360 213 11 351 685 576 908 3.62e-24 110
MS.gene20800.t1 MTR_5g097410 33.333 150 62 7 976 1099 1074 1211 2.40e-12 72.0
MS.gene20800.t1 MTR_8g106150 26.400 375 216 10 351 684 340 695 4.57e-22 103
MS.gene20800.t1 MTR_8g106150 33.775 151 75 5 964 1097 849 991 9.70e-15 79.7
MS.gene20800.t1 MTR_8g106150 26.344 372 220 9 351 684 97 452 5.10e-22 103
MS.gene20800.t1 MTR_8g106150 33.775 151 75 5 964 1097 606 748 6.75e-15 80.1
MS.gene20800.t1 MTR_3g105590 29.464 336 180 14 367 669 335 646 5.21e-20 97.1
MS.gene20800.t1 MTR_4g031150 26.230 366 206 11 364 708 359 681 5.53e-18 90.1
MS.gene20800.t1 MTR_1g013360 26.027 365 203 12 399 713 381 728 1.20e-17 89.4
MS.gene20800.t1 MTR_7g109150 27.311 238 145 5 454 690 393 603 5.28e-16 83.2
MS.gene20800.t1 MTR_8g063580 36.496 137 61 6 979 1102 15 138 7.28e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene20800.t1 AT2G47430 37.979 1148 615 25 11 1101 12 1119 0.0 674
MS.gene20800.t1 AT2G17820 28.257 591 381 15 103 674 196 762 9.03e-45 177
MS.gene20800.t1 AT2G17820 31.658 199 97 7 927 1096 1004 1192 3.54e-16 84.7
MS.gene20800.t1 AT1G27320 28.536 403 222 13 380 769 436 785 2.29e-30 130
MS.gene20800.t1 AT1G27320 29.221 154 75 5 973 1102 887 1030 1.20e-11 69.7
MS.gene20800.t1 AT2G01830 27.397 365 223 10 338 677 392 739 4.47e-28 123
MS.gene20800.t1 AT2G01830 37.037 135 67 4 973 1097 919 1045 7.72e-16 83.6
MS.gene20800.t1 AT2G01830 27.397 365 223 10 338 677 392 739 4.47e-28 123
MS.gene20800.t1 AT2G01830 37.037 135 67 4 973 1097 919 1045 7.72e-16 83.6
MS.gene20800.t1 AT2G01830 27.397 365 223 10 338 677 392 739 4.47e-28 123
MS.gene20800.t1 AT2G01830 37.037 135 67 4 973 1097 919 1045 7.72e-16 83.6
MS.gene20800.t1 AT2G01830 27.397 365 223 10 338 677 392 739 4.47e-28 123
MS.gene20800.t1 AT2G01830 37.037 135 67 4 973 1097 919 1045 7.72e-16 83.6
MS.gene20800.t1 AT2G01830 28.142 366 219 11 338 677 415 762 4.61e-28 123
MS.gene20800.t1 AT2G01830 37.037 135 67 4 973 1097 942 1068 7.74e-16 83.6
MS.gene20800.t1 AT2G01830 27.397 365 223 10 338 677 404 751 5.51e-28 122
MS.gene20800.t1 AT2G01830 37.500 136 65 5 973 1097 931 1057 8.38e-16 83.2
MS.gene20800.t1 AT5G35750 29.003 331 174 12 380 680 573 872 8.40e-25 112
MS.gene20800.t1 AT5G35750 31.544 149 68 5 973 1097 1032 1170 1.00e-11 70.1
MS.gene20800.t1 AT1G66340 27.532 316 178 9 378 686 323 594 6.95e-19 92.8
MS.gene20800.t1 AT5G10720 29.304 273 156 10 399 669 371 608 2.83e-18 91.3
MS.gene20800.t1 AT2G40940 25.538 325 185 9 364 676 309 588 1.18e-15 82.4

Find 204 sgRNAs with CRISPR-Local

Find 363 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTTATGATTATATCTTAA+TGG 0.123404 1.2:-65499183 MS.gene20800:CDS
TTGCTACCCCATTGATATTA+TGG 0.146001 1.2:-65503397 MS.gene20800:CDS
GCTTATCTTGCAGGCCTTAT+TGG 0.151594 1.2:-65502432 MS.gene20800:CDS
AGGTGACATTAGTAGAATTA+AGG 0.196080 1.2:+65504344 None:intergenic
GATAGTGTCGTTAGATATTA+TGG 0.222570 1.2:+65503818 None:intergenic
TGTGATCTAGGTTCATTTCT+TGG 0.224149 1.2:+65499515 None:intergenic
ATTGATGCAAGTTGGATAAA+TGG 0.240438 1.2:-65503792 MS.gene20800:CDS
AGTTGTTACTAATTCAAAAT+TGG 0.240702 1.2:-65502385 MS.gene20800:CDS
GTTTCAATTCAAGCTGTTAA+TGG 0.241296 1.2:-65503516 MS.gene20800:CDS
GATGGAAAAGTTATTGTAAA+AGG 0.243895 1.2:-65503576 MS.gene20800:CDS
TCAAGGGACAAAATCATATT+TGG 0.248361 1.2:-65503607 MS.gene20800:CDS
TTCTGAACTTGGTTTCAAAT+TGG 0.254047 1.2:+65502359 None:intergenic
ACTGACTTGTGATTCTCTTT+AGG 0.274643 1.2:+65501645 None:intergenic
TTCACATGAATTTGCATCAT+TGG 0.275818 1.2:-65503757 MS.gene20800:CDS
CACAGGTTGGATATAGTATA+TGG 0.279878 1.2:+65503872 None:intergenic
AGCAAAAGCAAGACTCTTAT+TGG 0.282452 1.2:+65502476 None:intergenic
GATCTTCGTGCTTATCTTGC+AGG 0.288028 1.2:-65502441 MS.gene20800:CDS
ATTAGTAACAACTAATTTAG+AGG 0.290279 1.2:+65502395 None:intergenic
ACAAAAGTCCTATGTTAATC+TGG 0.291733 1.2:-65499435 MS.gene20800:CDS
TTCTTTCCACTTAATGGTTT+AGG 0.294905 1.2:+65499356 None:intergenic
AGTAAATGCTCTTTCTTGAT+AGG 0.295947 1.2:+65498894 None:intergenic
TTCCTGAGTTCGGTGGTAAT+TGG 0.302430 1.2:-65499556 MS.gene20800:CDS
TTTGAAACCAAGTTCAGAAT+TGG 0.304813 1.2:-65502355 MS.gene20800:CDS
TGCTACCCCATTGATATTAT+GGG 0.314042 1.2:-65503396 MS.gene20800:CDS
GTGTTAGCTGTCCCACAAAA+TGG 0.319563 1.2:-65502687 MS.gene20800:CDS
ATGATTTACCTAGCAAATCT+TGG 0.341823 1.2:+65502301 None:intergenic
TTGGAAGGTACTTGTGATCT+AGG 0.351381 1.2:+65499503 None:intergenic
GCTGTTAAATTTACTGATGA+AGG 0.355175 1.2:-65501870 MS.gene20800:CDS
GGTGACATTAGTAGAATTAA+GGG 0.356467 1.2:+65504345 None:intergenic
ATTCAAGCTGTTAATGGTAA+TGG 0.357123 1.2:-65503510 MS.gene20800:CDS
GTAGATTGTTCCAAGTCATT+AGG 0.359195 1.2:-65499583 MS.gene20800:CDS
TCCAACCAAACAACTTTACT+AGG 0.359940 1.2:+65499683 None:intergenic
GTGATATCAAAACCATTTCA+TGG 0.361788 1.2:-65499608 MS.gene20800:CDS
CCAACAAGATCCATGTCTTA+TGG 0.374116 1.2:-65501706 MS.gene20800:CDS
ACAATTCGTACTGCTAGTTC+TGG 0.375945 1.2:-65500163 MS.gene20800:CDS
ATGCTCTTTCTTGATAGGTT+TGG 0.386579 1.2:+65498899 None:intergenic
ACACCTTTCTTCATTGCCAT+TGG 0.389100 1.2:+65501996 None:intergenic
GAGACAGTGAATTATGAGTA+TGG 0.390792 1.2:-65500229 MS.gene20800:CDS
TCACATGAATTTGCATCATT+GGG 0.392411 1.2:-65503756 MS.gene20800:CDS
GTATTTGAAGTGGATGATAC+AGG 0.399459 1.2:-65501678 MS.gene20800:CDS
TCAATCCTAGTAAAGTTGTT+TGG 0.399703 1.2:-65499688 MS.gene20800:CDS
TAGACACACACTTTCATCAT+TGG 0.402470 1.2:+65499484 None:intergenic
TTCTATTCCCATAATATCAA+TGG 0.403961 1.2:+65503389 None:intergenic
GTAGGAACTGGCTTGGGACT+TGG 0.405420 1.2:-65501579 MS.gene20800:CDS
GAGGGGCTAACATGGAGTTT+TGG 0.406382 1.2:+65500118 None:intergenic
AACACTCTTGTGGTTAGTCT+TGG 0.410012 1.2:+65501800 None:intergenic
AGTCTTCGGAGATGAGTTCT+AGG 0.419954 1.2:-65499907 MS.gene20800:CDS
ATCTTACAAAGCTTAGAAAA+TGG 0.421080 1.2:+65499737 None:intergenic
AACAATCTACTACCATGAAA+TGG 0.422179 1.2:+65499596 None:intergenic
ATTAGGCTTCTTCCTGAGTT+CGG 0.422475 1.2:-65499566 MS.gene20800:CDS
ACATTTCAATCAAACCAATA+AGG 0.422617 1.2:+65502418 None:intergenic
CAGTTGTTCATAGAGAGCTT+AGG 0.425096 1.2:-65500031 MS.gene20800:CDS
TTTGTTGATGATGATTTCAT+TGG 0.427329 1.2:+65504391 None:intergenic
TCATATTTGGCTACCAAAGA+TGG 0.429385 1.2:-65503594 MS.gene20800:CDS
ATGGCTACTTTGAGATCTCT+TGG 0.429609 1.2:-65499290 MS.gene20800:CDS
TTATATCTTAATGGATTGTC+AGG 0.430305 1.2:-65499174 MS.gene20800:intron
CCATAAGACATGGATCTTGT+TGG 0.432881 1.2:+65501706 None:intergenic
AGTTGTTCATAGAGAGCTTA+GGG 0.434205 1.2:-65500030 MS.gene20800:CDS
CCACCATACTCAATGAATAC+TGG 0.434464 1.2:-65504783 None:intergenic
TCCTAGTAAAGTTGTTTGGT+TGG 0.434623 1.2:-65499684 MS.gene20800:CDS
TTGGTCTCCAATTCTGAACT+TGG 0.436377 1.2:+65502348 None:intergenic
TCTATTCCCATAATATCAAT+GGG 0.437409 1.2:+65503390 None:intergenic
GAAAGGTGTAGAAGTTGTAT+TGG 0.437547 1.2:-65501982 MS.gene20800:CDS
CATAAGACATGGATCTTGTT+GGG 0.439105 1.2:+65501707 None:intergenic
GACAAGCTGACCACTGAGAC+TGG 0.440049 1.2:-65498939 MS.gene20800:CDS
AAGAGTTCCTTTCAAAGCTA+TGG 0.440702 1.2:-65499855 MS.gene20800:CDS
CCTTTCAAAGCTATGGATCA+TGG 0.441919 1.2:-65499848 MS.gene20800:CDS
TCAAAGTTCACCGGAGTCTT+CGG 0.442260 1.2:-65499921 MS.gene20800:CDS
AATCCAAGTCATAAAGAAAA+GGG 0.444621 1.2:-65502651 MS.gene20800:CDS
CACTGTCTCATTCTCACATA+AGG 0.445103 1.2:+65500243 None:intergenic
TCTGTTGGCCAAGTAGGAAC+TGG 0.448175 1.2:-65501591 MS.gene20800:CDS
TATCATCTTGATCAATTGCT+TGG 0.448900 1.2:+65499633 None:intergenic
GGAGACCAACTTAAAACAAA+TGG 0.449087 1.2:-65502334 MS.gene20800:CDS
TAATCCAAGTCATAAAGAAA+AGG 0.450153 1.2:-65502652 MS.gene20800:CDS
ATTATCATTGATGCAAATGC+AGG 0.450739 1.2:-65499761 MS.gene20800:CDS
GACACTCTTGATTGTAATGA+TGG 0.452822 1.2:-65502625 MS.gene20800:CDS
TATGTTAATCTGGGAAGAAA+AGG 0.456024 1.2:-65499425 MS.gene20800:CDS
ATGGTAATGGAGATCTAATA+AGG 0.458097 1.2:-65503497 MS.gene20800:CDS
GTTGTGTTATTGTAGGCATA+TGG 0.458179 1.2:-65504553 MS.gene20800:intron
GCCTCAAACCCATCCTTCAC+TGG 0.462390 1.2:+65499035 None:intergenic
GTCCCAAGCCAGTTCCTACT+TGG 0.464624 1.2:+65501583 None:intergenic
TAGGAACTGGCTTGGGACTT+GGG 0.466445 1.2:-65501578 MS.gene20800:CDS
GGCCAAGTAGGAACTGGCTT+GGG 0.467713 1.2:-65501585 MS.gene20800:CDS
GAGAATTCTGTTGGCCAAGT+AGG 0.471261 1.2:-65501597 MS.gene20800:CDS
AGAATAGGAGGGGTCTCTCT+TGG 0.472858 1.2:-65503678 MS.gene20800:CDS
GAAAATAGTGACATAATGTA+AGG 0.473865 1.2:-65498852 None:intergenic
GTTGTATTGGACTCTTGTAA+TGG 0.481853 1.2:-65501969 MS.gene20800:CDS
TGATATTATGGGAATAGAAT+CGG 0.482331 1.2:-65503385 MS.gene20800:intron
GGAATTGTGGACAAGGAAGT+TGG 0.483910 1.2:-65500304 MS.gene20800:CDS
GCCTCTGAGAGGGGCTAACA+TGG 0.484367 1.2:+65500110 None:intergenic
ACTTGGGATTGTGCAGTCAT+TGG 0.486079 1.2:-65501562 MS.gene20800:intron
TCCATTAAGATATAATCATA+AGG 0.487002 1.2:+65499182 None:intergenic
TCAGCTAGAATCAACAGAAT+AGG 0.488864 1.2:-65503693 MS.gene20800:CDS
AGCAATCCTAAACCATTAAG+TGG 0.490150 1.2:-65499362 MS.gene20800:CDS
GCCAGTGAAGGATGGGTTTG+AGG 0.491157 1.2:-65499036 MS.gene20800:CDS
TCTTGATAGGTTTGGTAATG+TGG 0.491525 1.2:+65498907 None:intergenic
TAATCAACACTACTCTCAAA+AGG 0.491934 1.2:+65499656 None:intergenic
TGATTTACCTAGCAAATCTT+GGG 0.494105 1.2:+65502302 None:intergenic
CGTTTGATGCATGGAGACAT+TGG 0.495528 1.2:-65500325 MS.gene20800:CDS
ATTCACGTGTGAAAGGTGAT+AGG 0.495625 1.2:-65501932 MS.gene20800:CDS
TTCAATGCTTGAAATAATAA+CGG 0.495873 1.2:+65504023 None:intergenic
TTGACACAAATCTCATACAT+AGG 0.498626 1.2:-65503987 MS.gene20800:CDS
CAAGTTAAAGAGAATTCTGT+TGG 0.500351 1.2:-65501606 MS.gene20800:CDS
CAAGATAAGCACGAAGATCA+TGG 0.500470 1.2:+65502445 None:intergenic
CAGGAAGAAGCCTAATGACT+TGG 0.500658 1.2:+65499573 None:intergenic
AGGAGGATTAGTAAAATCCT+TGG 0.504201 1.2:+65499202 None:intergenic
TTCTAGGTACGTTTGATGCA+TGG 0.504400 1.2:-65500334 MS.gene20800:intron
TATGCTGAGAAAGATTTGTA+TGG 0.505750 1.2:-65499309 MS.gene20800:CDS
ATTCCAGTGTCATGGTTCAC+AGG 0.507966 1.2:+65503855 None:intergenic
CAGTGTCATGGTTCACAGGT+TGG 0.508152 1.2:+65503859 None:intergenic
GACAGATGCCAGTGAAGGAT+GGG 0.510140 1.2:-65499043 MS.gene20800:intron
CCATGATCCATAGCTTTGAA+AGG 0.512640 1.2:+65499848 None:intergenic
AATGAATACTGGTTTATCAA+TGG 0.512649 1.2:-65504772 MS.gene20800:CDS
CAAAAGTCCTATGTTAATCT+GGG 0.514695 1.2:-65499434 MS.gene20800:CDS
CTTTCTTCATTGCCATTGGA+TGG 0.517203 1.2:+65502000 None:intergenic
GACAAGGAAGTTGGCAAAAG+AGG 0.518131 1.2:-65500295 MS.gene20800:CDS
ATGATAATCAAAACAAAACT+TGG 0.518308 1.2:+65499776 None:intergenic
TGGAGATCTAATAAGGAATG+AGG 0.518743 1.2:-65503490 MS.gene20800:CDS
CATCCAATGGCAATGAAGAA+AGG 0.522261 1.2:-65501999 MS.gene20800:CDS
CTATCAATATTGATGCAAGT+TGG 0.529019 1.2:-65503800 MS.gene20800:CDS
GGACAGATGCCAGTGAAGGA+TGG 0.536750 1.2:-65499044 MS.gene20800:intron
GAGCTTAGGGATTAAAGTCA+AGG 0.538142 1.2:-65500017 MS.gene20800:CDS
GAAGGCTCAGGCCTCTGAGA+GGG 0.538284 1.2:+65500100 None:intergenic
AATTGTGCCCAAGATTTGCT+AGG 0.541010 1.2:-65502309 MS.gene20800:intron
GACAATGCGAGTGATATAAT+CGG 0.541959 1.2:+65503635 None:intergenic
CTTTCTCTCAGCTTGTTCTG+TGG 0.542457 1.2:+65502503 None:intergenic
ATCTCATACATAGGAATGGA+AGG 0.542582 1.2:-65503978 MS.gene20800:CDS
TATGAGTATGGATCAACCTC+AGG 0.543399 1.2:-65500217 MS.gene20800:CDS
TCTTGCAAGGATCAAGCTGT+TGG 0.545443 1.2:-65503459 MS.gene20800:CDS
CATTCTTTACATTACTGATG+AGG 0.545789 1.2:-65500071 MS.gene20800:CDS
TTCATCTTTCATGATCATGC+TGG 0.546964 1.2:-65504736 MS.gene20800:intron
CTCGCATTGTCGATCGTCAA+GGG 0.547004 1.2:-65503623 MS.gene20800:CDS
TATTTGAAGTGGATGATACA+GGG 0.550570 1.2:-65501677 MS.gene20800:CDS
CAAGGTGAAATAGAAGAAAG+TGG 0.553365 1.2:-65499392 MS.gene20800:CDS
GCTAGAATCAACAGAATAGG+AGG 0.555811 1.2:-65503690 MS.gene20800:CDS
GACACAAGCAAGATTGAGGC+AGG 0.556358 1.2:-65502089 MS.gene20800:CDS
TGTACTCTAACTCATCTAGT+GGG 0.561197 1.2:-65503911 MS.gene20800:CDS
ACTATTGACCAATGTGAGAA+TGG 0.561890 1.2:-65499260 MS.gene20800:CDS
AGAGAGATGGAGAAACACTA+TGG 0.561980 1.2:-65498999 MS.gene20800:CDS
ATCAAACATTCACGTGTGAA+AGG 0.562833 1.2:-65501939 MS.gene20800:CDS
ACAAATCTCATACATAGGAA+TGG 0.563392 1.2:-65503982 MS.gene20800:CDS
AAGATTTCATAACACTCTTG+TGG 0.563575 1.2:+65501790 None:intergenic
CTGTTAAATTTACTGATGAA+GGG 0.567152 1.2:-65501869 MS.gene20800:CDS
GACACCATGTTGGTATCTCA+TGG 0.568120 1.2:-65504506 MS.gene20800:CDS
TGGCCAAGTAGGAACTGGCT+TGG 0.570068 1.2:-65501586 MS.gene20800:CDS
AGGATGGGTTTGAGGCAACA+AGG 0.571342 1.2:-65499028 MS.gene20800:CDS
GTGTTATGAAATCTTTGTCT+TGG 0.572186 1.2:-65501782 MS.gene20800:CDS
ACTCGCATTGTCGATCGTCA+AGG 0.572216 1.2:-65503624 MS.gene20800:CDS
ATGTAAAGAATGACATGTGA+AGG 0.573120 1.2:+65500082 None:intergenic
CACACACTTTCATCATTGGA+AGG 0.574607 1.2:+65499488 None:intergenic
GGAGATCTAATAAGGAATGA+GGG 0.576644 1.2:-65503489 MS.gene20800:CDS
AGCATGATCATGAAAGATGA+AGG 0.576724 1.2:+65504738 None:intergenic
GGCTGTGAGAACTGTTCAAG+AGG 0.577188 1.2:-65499231 MS.gene20800:CDS
GCATGGAGACATTGGAATTG+TGG 0.579000 1.2:-65500317 MS.gene20800:CDS
ATCCAATTACCACCGAACTC+AGG 0.583478 1.2:+65499554 None:intergenic
GCTGACCACTGAGACTGGAA+TGG 0.584171 1.2:-65498934 MS.gene20800:CDS
AGTTGATTTGTACCATCCAA+TGG 0.585418 1.2:-65502012 MS.gene20800:CDS
ACTTGACACAAGCAAGATTG+AGG 0.587753 1.2:-65502093 MS.gene20800:CDS
TATCAGTGATCAAAGTTCAC+CGG 0.592353 1.2:-65499930 MS.gene20800:CDS
TTGCCTCATTGACACCATGT+TGG 0.593071 1.2:-65504516 MS.gene20800:CDS
AAGTGTGGAACAATGTTGGA+AGG 0.593740 1.2:-65499462 MS.gene20800:CDS
AGAAAAGGTTCTGTTCATCA+AGG 0.596627 1.2:-65499410 MS.gene20800:CDS
CCTCTTCACCATTCTCACAT+TGG 0.597986 1.2:+65499252 None:intergenic
ATACAAATCTTTCTCAGCAT+AGG 0.598094 1.2:+65499311 None:intergenic
AGGCTTCTTCCTGAGTTCGG+TGG 0.599749 1.2:-65499563 MS.gene20800:CDS
GGCACATAACAGTTAGAGCA+TGG 0.600016 1.2:-65501848 MS.gene20800:CDS
TGATTTATCCTCTCTCCTTG+AGG 0.602251 1.2:-65502039 MS.gene20800:CDS
TGAGGGAGCTGTATCTTGCA+AGG 0.603521 1.2:-65503472 MS.gene20800:CDS
AAGGCTCAGGCCTCTGAGAG+GGG 0.603713 1.2:+65500101 None:intergenic
AGAATGACATGTGAAGGCTC+AGG 0.609075 1.2:+65500088 None:intergenic
AACAAGGGAGATAAGAGAGA+TGG 0.610075 1.2:-65499012 MS.gene20800:CDS
GAAGTGGATGATACAGGGAA+AGG 0.611039 1.2:-65501672 MS.gene20800:CDS
GTCTAAGTGTGGAACAATGT+TGG 0.612167 1.2:-65499466 MS.gene20800:CDS
ATGTACTCTAACTCATCTAG+TGG 0.614715 1.2:-65503912 MS.gene20800:CDS
GAACTCATCTCCGAAGACTC+CGG 0.615301 1.2:+65499911 None:intergenic
CAACCTGTGAACCATGACAC+TGG 0.615905 1.2:-65503858 MS.gene20800:CDS
AACTACATCCTCAAGGAGAG+AGG 0.617424 1.2:+65502031 None:intergenic
TGTTCAAGAGGGTTTAACCA+AGG 0.619844 1.2:-65499219 MS.gene20800:CDS
GGATGGGTTTGAGGCAACAA+GGG 0.621462 1.2:-65499027 MS.gene20800:CDS
GTACTCTAACTCATCTAGTG+GGG 0.623166 1.2:-65503910 MS.gene20800:CDS
AACATGGTGTCAATGAGGCA+AGG 0.632743 1.2:+65504518 None:intergenic
AGTGTGGAACAATGTTGGAA+GGG 0.632865 1.2:-65499461 MS.gene20800:CDS
CTAGAATCAACAGAATAGGA+GGG 0.634091 1.2:-65503689 MS.gene20800:CDS
AGTTAGAGCATGGACTCAGA+AGG 0.635220 1.2:-65501838 MS.gene20800:CDS
ACAAATCAACTACATCCTCA+AGG 0.638614 1.2:+65502024 None:intergenic
AATACAAAATCCATAAGACA+TGG 0.641986 1.2:+65501696 None:intergenic
GCTGTGAGAACTGTTCAAGA+GGG 0.647146 1.2:-65499230 MS.gene20800:CDS
TACTCTAACTCATCTAGTGG+GGG 0.650632 1.2:-65503909 MS.gene20800:CDS
CTTGGTGTGAACATCAGAGA+AGG 0.651051 1.2:+65504324 None:intergenic
AGACATTGGAATTGTGGACA+AGG 0.654185 1.2:-65500311 MS.gene20800:CDS
CCAATGTGAGAATGGTGAAG+AGG 0.657628 1.2:-65499252 MS.gene20800:CDS
TGAAGGCTCAGGCCTCTGAG+AGG 0.658399 1.2:+65500099 None:intergenic
TGAAAGTGTGTGTCTAAGTG+TGG 0.660501 1.2:-65499477 MS.gene20800:CDS
TGTGAACCATGACACTGGAA+TGG 0.664217 1.2:-65503853 MS.gene20800:CDS
ATACCAACATGGTGTCAATG+AGG 0.665423 1.2:+65504513 None:intergenic
ATTAAGATATAATCATAAGG+AGG 0.668188 1.2:+65499185 None:intergenic
AATTGGACAGATGCCAGTGA+AGG 0.672213 1.2:-65499048 MS.gene20800:intron
TATGAGATTTGTGTCAAGTG+AGG 0.675612 1.2:+65503993 None:intergenic
GAAATCCATTCCAGTCTCAG+TGG 0.681772 1.2:+65498929 None:intergenic
TAGAATCAACAGAATAGGAG+GGG 0.688378 1.2:-65503688 MS.gene20800:CDS
TCCATGTTAGCCCCTCTCAG+AGG 0.694979 1.2:-65500111 MS.gene20800:CDS
CTTCTCTGATGTTCACACCA+AGG 0.706528 1.2:-65504323 MS.gene20800:intron
CTATTCCCATAATATCAATG+GGG 0.765530 1.2:+65503391 None:intergenic
GTGACCATGAGATACCAACA+TGG 0.814649 1.2:+65504502 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAGTAGTAAAATTATTTTT+TGG + chr1.2:65500407-65500426 None:intergenic 10.0%
!!! AAGTAGTAAAATTATTTTTT+GGG + chr1.2:65500406-65500425 None:intergenic 10.0%
!! ATAAGCAAACAAAATATTTA+TGG + chr1.2:65499361-65499380 None:intergenic 15.0%
!! CATTTAATAAAAATGTCAAA+TGG - chr1.2:65503264-65503283 MS.gene20800:intron 15.0%
!! TATCATTAAAAATCATCAAA+CGG + chr1.2:65500087-65500106 None:intergenic 15.0%
!!! AAAATATTTATGGTTTTGAA+GGG + chr1.2:65499351-65499370 None:intergenic 15.0%
!!! AATTGTTAATTTTTTCTCTA+GGG + chr1.2:65503448-65503467 None:intergenic 15.0%
!!! ATAACTTAAGCTTTATATTT+TGG - chr1.2:65504528-65504547 MS.gene20800:CDS 15.0%
!!! ATGATTTTTTTACAACTAAA+AGG + chr1.2:65503247-65503266 None:intergenic 15.0%
!!! GTGTTAAATTTTCAAATTAT+GGG + chr1.2:65500698-65500717 None:intergenic 15.0%
!!! TGATTTTTTTACAACTAAAA+GGG + chr1.2:65503246-65503265 None:intergenic 15.0%
!!! TGTGTTAAATTTTCAAATTA+TGG + chr1.2:65500699-65500718 None:intergenic 15.0%
!!! TTTTATTTTGTTACAATCTT+AGG - chr1.2:65501494-65501513 MS.gene20800:intron 15.0%
!! AAATGTTTGATATATAAGAG+AGG + chr1.2:65502338-65502357 None:intergenic 20.0%
!! AAGAAGATCAAAAAAGAAAA+GGG - chr1.2:65503666-65503685 MS.gene20800:CDS 20.0%
!! AGTTCATATATGATATAGAA+AGG - chr1.2:65503063-65503082 MS.gene20800:intron 20.0%
!! AGTTGTTACTAATTCAAAAT+TGG - chr1.2:65501240-65501259 MS.gene20800:intron 20.0%
!! ATGATAATCAAAACAAAACT+TGG + chr1.2:65503852-65503871 None:intergenic 20.0%
!! ATTAAGATATAATCATAAGG+AGG + chr1.2:65504443-65504462 None:intergenic 20.0%
!! ATTAGTAACAACTAATTTAG+AGG + chr1.2:65501233-65501252 None:intergenic 20.0%
!! GTTAGTTAATATACTACTAT+TGG + chr1.2:65500330-65500349 None:intergenic 20.0%
!! TCCATTAAGATATAATCATA+AGG + chr1.2:65504446-65504465 None:intergenic 20.0%
!! TCCTTATGATTATATCTTAA+TGG - chr1.2:65504442-65504461 MS.gene20800:CDS 20.0%
!! TTAAGATTCAAATCATGAAT+TGG + chr1.2:65503202-65503221 None:intergenic 20.0%
!! TTAATTTATTTGCACTTTGT+AGG - chr1.2:65499574-65499593 MS.gene20800:CDS 20.0%
!! TTATGGAATGTGTTTATAAA+CGG + chr1.2:65500583-65500602 None:intergenic 20.0%
!! TTCAATGCTTGAAATAATAA+CGG + chr1.2:65499605-65499624 None:intergenic 20.0%
!! TTGTACTAAATAGTATATCA+CGG + chr1.2:65501433-65501452 None:intergenic 20.0%
!!! AAAGTACTATTTGGTATTTT+CGG + chr1.2:65500380-65500399 None:intergenic 20.0%
!!! AAATATCTTTGTAGCTTTAA+TGG - chr1.2:65499550-65499569 MS.gene20800:CDS 20.0%
!!! ATTATCCATTTGTTTTAAGT+TGG + chr1.2:65501299-65501318 None:intergenic 20.0%
!!! ATTATTTGTTGTGTTATTGT+AGG - chr1.2:65499065-65499084 MS.gene20800:intron 20.0%
!!! CAAAATATTTATGGTTTTGA+AGG + chr1.2:65499352-65499371 None:intergenic 20.0%
!!! GAATTGTTAATTTTTTCTCT+AGG + chr1.2:65503449-65503468 None:intergenic 20.0%
!!! TAATGTAGTTAACAACTTTT+TGG - chr1.2:65502971-65502990 MS.gene20800:intron 20.0%
!!! TCTTTGAGTTAAAACTATTA+AGG + chr1.2:65500785-65500804 None:intergenic 20.0%
!!! TTGATTTGTAACAAAGATTA+AGG - chr1.2:65498981-65499000 MS.gene20800:CDS 20.0%
! AAAAACTTCTTTCCACTTAA+TGG + chr1.2:65504278-65504297 None:intergenic 25.0%
! AAGGGAAATTATACAAGAAA+TGG + chr1.2:65499333-65499352 None:intergenic 25.0%
! AATACAAAATCCATAAGACA+TGG + chr1.2:65501932-65501951 None:intergenic 25.0%
! AATCCAAGTCATAAAGAAAA+GGG - chr1.2:65500974-65500993 MS.gene20800:intron 25.0%
! ACATTTCAATCAAACCAATA+AGG + chr1.2:65501210-65501229 None:intergenic 25.0%
! AGGGAAATTATACAAGAAAT+GGG + chr1.2:65499332-65499351 None:intergenic 25.0%
! ATCTTACAAAGCTTAGAAAA+TGG + chr1.2:65503891-65503910 None:intergenic 25.0%
! ATGTTCAAGAAGAAAAACAA+TGG - chr1.2:65503819-65503838 MS.gene20800:CDS 25.0%
! CAAGAAGATCAAAAAAGAAA+AGG - chr1.2:65503665-65503684 MS.gene20800:CDS 25.0%
! CTGTTAAATTTACTGATGAA+GGG - chr1.2:65501756-65501775 MS.gene20800:CDS 25.0%
! GATGGAAAAGTTATTGTAAA+AGG - chr1.2:65500049-65500068 MS.gene20800:CDS 25.0%
! TAATCCAAGTCATAAAGAAA+AGG - chr1.2:65500973-65500992 MS.gene20800:intron 25.0%
! TACAAAATATTGTTAACGAG+CGG - chr1.2:65501448-65501467 MS.gene20800:intron 25.0%
! TCTATTCCCATAATATCAAT+GGG + chr1.2:65500238-65500257 None:intergenic 25.0%
! TGATATTATGGGAATAGAAT+CGG - chr1.2:65500240-65500259 MS.gene20800:CDS 25.0%
! TGTTTCATTAGAATGAATCA+AGG + chr1.2:65502941-65502960 None:intergenic 25.0%
! TTAGTTGTCAATTCATTTAG+AGG - chr1.2:65502144-65502163 MS.gene20800:intron 25.0%
! TTCTATTCCCATAATATCAA+TGG + chr1.2:65500239-65500258 None:intergenic 25.0%
!! AAGTACTATTTGGTATTTTC+GGG + chr1.2:65500379-65500398 None:intergenic 25.0%
!! AGTTTTCTATTCTTGAATGT+TGG - chr1.2:65501046-65501065 MS.gene20800:intron 25.0%
!! ATTAAGTGGAAAGAAGTTTT+TGG - chr1.2:65504277-65504296 MS.gene20800:intron 25.0%
!! TACAATAACTTTTCCATCTT+TGG + chr1.2:65500047-65500066 None:intergenic 25.0%
!! TATGGATTTTGTATTTGAAG+TGG - chr1.2:65501937-65501956 MS.gene20800:CDS 25.0%
!! TTAACTTTTCCACAATGAAT+TGG - chr1.2:65504560-65504579 MS.gene20800:intron 25.0%
!!! AATGTCAAATGGTTTTTTCT+AGG - chr1.2:65503275-65503294 MS.gene20800:intron 25.0%
!!! TTAATTTTTTCTCTAGGGTT+TGG + chr1.2:65503443-65503462 None:intergenic 25.0%
!!! TTATATCTTAATGGATTGTC+AGG - chr1.2:65504451-65504470 MS.gene20800:CDS 25.0%
!!! TTTGTTGATGATGATTTCAT+TGG + chr1.2:65499237-65499256 None:intergenic 25.0%
!!! TTTTTTTACAACTAAAAGGG+AGG + chr1.2:65503243-65503262 None:intergenic 25.0%
AAAGACAAAAGAGAAGTGAT+TGG + chr1.2:65503011-65503030 None:intergenic 30.0%
AACAATCTACTACCATGAAA+TGG + chr1.2:65504032-65504051 None:intergenic 30.0%
AAGATTTCATAACACTCTTG+TGG + chr1.2:65501838-65501857 None:intergenic 30.0%
ACAAAAGTCCTATGTTAATC+TGG - chr1.2:65504190-65504209 MS.gene20800:intron 30.0%
ACAAATCTCATACATAGGAA+TGG - chr1.2:65499643-65499662 MS.gene20800:CDS 30.0%
ACGACATTTGTGAACATATT+TGG + chr1.2:65500864-65500883 None:intergenic 30.0%
AGAGTCATATTGTTTGTGTT+GGG + chr1.2:65502873-65502892 None:intergenic 30.0%
AGGTGACATTAGTAGAATTA+AGG + chr1.2:65499284-65499303 None:intergenic 30.0%
AGTAAATGCTCTTTCTTGAT+AGG + chr1.2:65504734-65504753 None:intergenic 30.0%
ATACAAATCTTTCTCAGCAT+AGG + chr1.2:65504317-65504336 None:intergenic 30.0%
ATGATTTACCTAGCAAATCT+TGG + chr1.2:65501327-65501346 None:intergenic 30.0%
ATGTAAAGAATGACATGTGA+AGG + chr1.2:65503546-65503565 None:intergenic 30.0%
ATTATCATTGATGCAAATGC+AGG - chr1.2:65503864-65503883 MS.gene20800:CDS 30.0%
ATTCAAGCTGTTAATGGTAA+TGG - chr1.2:65500115-65500134 MS.gene20800:CDS 30.0%
ATTTATTTGCACTTTGTAGG+TGG - chr1.2:65499577-65499596 MS.gene20800:CDS 30.0%
CAAAAGTCCTATGTTAATCT+GGG - chr1.2:65504191-65504210 MS.gene20800:intron 30.0%
CAAGTTAAAGAGAATTCTGT+TGG - chr1.2:65502019-65502038 MS.gene20800:CDS 30.0%
CATTCTTTACATTACTGATG+AGG - chr1.2:65503554-65503573 MS.gene20800:CDS 30.0%
CCTATGAATAGGTAAAATGT+TGG + chr1.2:65502819-65502838 None:intergenic 30.0%
CTAGTGTTTGGATTAAGTAT+AGG + chr1.2:65502617-65502636 None:intergenic 30.0%
CTAGTGTTTGTATCAAGTAT+AGG + chr1.2:65502481-65502500 None:intergenic 30.0%
CTATCAATATTGATGCAAGT+TGG - chr1.2:65499825-65499844 MS.gene20800:CDS 30.0%
CTATTCCCATAATATCAATG+GGG + chr1.2:65500237-65500256 None:intergenic 30.0%
GACTCTTATCGTCTATAAAT+AGG + chr1.2:65502363-65502382 None:intergenic 30.0%
GCTACCAATGTTGTTAAATA+GGG - chr1.2:65501358-65501377 MS.gene20800:intron 30.0%
GCTGTTAAATTTACTGATGA+AGG - chr1.2:65501755-65501774 MS.gene20800:CDS 30.0%
GGTGACATTAGTAGAATTAA+GGG + chr1.2:65499283-65499302 None:intergenic 30.0%
GTGATATCAAAACCATTTCA+TGG - chr1.2:65504017-65504036 MS.gene20800:CDS 30.0%
GTGTTATGAAATCTTTGTCT+TGG - chr1.2:65501843-65501862 MS.gene20800:CDS 30.0%
GTTTCAATTCAAGCTGTTAA+TGG - chr1.2:65500109-65500128 MS.gene20800:CDS 30.0%
TAATCAACACTACTCTCAAA+AGG + chr1.2:65503972-65503991 None:intergenic 30.0%
TAGAGTCATATTGTTTGTGT+TGG + chr1.2:65502874-65502893 None:intergenic 30.0%
TATCATCTTGATCAATTGCT+TGG + chr1.2:65503995-65504014 None:intergenic 30.0%
TATGCTGAGAAAGATTTGTA+TGG - chr1.2:65504316-65504335 MS.gene20800:intron 30.0%
TATGTTAATCTGGGAAGAAA+AGG - chr1.2:65504200-65504219 MS.gene20800:intron 30.0%
TCAAGGGACAAAATCATATT+TGG - chr1.2:65500018-65500037 MS.gene20800:CDS 30.0%
TCAATCCTAGTAAAGTTGTT+TGG - chr1.2:65503937-65503956 MS.gene20800:CDS 30.0%
TCACATGAATTTGCATCATT+GGG - chr1.2:65499869-65499888 MS.gene20800:CDS 30.0%
TGATTTACCTAGCAAATCTT+GGG + chr1.2:65501326-65501345 None:intergenic 30.0%
TGCTACCAATGTTGTTAAAT+AGG - chr1.2:65501357-65501376 MS.gene20800:intron 30.0%
TTCACATGAATTTGCATCAT+TGG - chr1.2:65499868-65499887 MS.gene20800:CDS 30.0%
TTCTGAACTTGGTTTCAAAT+TGG + chr1.2:65501269-65501288 None:intergenic 30.0%
TTCTTTCCACTTAATGGTTT+AGG + chr1.2:65504272-65504291 None:intergenic 30.0%
TTGACACAAATCTCATACAT+AGG - chr1.2:65499638-65499657 MS.gene20800:CDS 30.0%
TTTGCTAGGTAAATCATCAT+AGG - chr1.2:65501330-65501349 MS.gene20800:intron 30.0%
! AATCCCTTTTCTTTATGACT+TGG + chr1.2:65500980-65500999 None:intergenic 30.0%
! ATTGATGCAAGTTGGATAAA+TGG - chr1.2:65499833-65499852 MS.gene20800:CDS 30.0%
! CACACATTTTACCCATTTAT+AGG - chr1.2:65502392-65502411 MS.gene20800:CDS 30.0%
! CCAACATTTTACCTATTCAT+AGG - chr1.2:65502816-65502835 MS.gene20800:intron 30.0%
! GATAGTGTCGTTAGATATTA+TGG + chr1.2:65499810-65499829 None:intergenic 30.0%
! TATTTGAAGTGGATGATACA+GGG - chr1.2:65501948-65501967 MS.gene20800:CDS 30.0%
! TTTGAAACCAAGTTCAGAAT+TGG - chr1.2:65501270-65501289 MS.gene20800:intron 30.0%
! TTTGGGTACAAAGTACTATT+TGG + chr1.2:65500389-65500408 None:intergenic 30.0%
! TTTTCACAAAACATCTCTCT+TGG - chr1.2:65500474-65500493 MS.gene20800:intron 30.0%
! TTTTCTTCCCAGATTAACAT+AGG + chr1.2:65504201-65504220 None:intergenic 30.0%
! TTTTTCACACACTACAATGA+TGG - chr1.2:65499674-65499693 MS.gene20800:CDS 30.0%
!! AGTCTTGGATTTTAGCAATT+TGG + chr1.2:65501813-65501832 None:intergenic 30.0%
!! ATGGTAATGGAGATCTAATA+AGG - chr1.2:65500128-65500147 MS.gene20800:CDS 30.0%
!!! TATTTTCGGGTACAAAAGTA+CGG + chr1.2:65500366-65500385 None:intergenic 30.0%
!!! TATTTTTTTTCTTTTCGCGC+TGG + chr1.2:65499535-65499554 None:intergenic 30.0%
AAAAATGCAACTAGAGGAAG+AGG - chr1.2:65501559-65501578 MS.gene20800:intron 35.0%
AAATGGGTAAAATGTGTGAG+TGG + chr1.2:65502390-65502409 None:intergenic 35.0%
AAATGTTGGATACGTAAGAG+AGG + chr1.2:65502805-65502824 None:intergenic 35.0%
AAGAGTTCCTTTCAAAGCTA+TGG - chr1.2:65503770-65503789 MS.gene20800:CDS 35.0%
AATGTACTCTAGATTTGCGA+AGG - chr1.2:65499494-65499513 MS.gene20800:CDS 35.0%
ACAAATCAACTACATCCTCA+AGG + chr1.2:65501604-65501623 None:intergenic 35.0%
ACTATTGACCAATGTGAGAA+TGG - chr1.2:65504365-65504384 MS.gene20800:CDS 35.0%
AGAAAAGGTTCTGTTCATCA+AGG - chr1.2:65504215-65504234 MS.gene20800:intron 35.0%
AGCAAAAGCAAGACTCTTAT+TGG + chr1.2:65501152-65501171 None:intergenic 35.0%
AGCAATCCTAAACCATTAAG+TGG - chr1.2:65504263-65504282 MS.gene20800:intron 35.0%
AGCATGATCATGAAAGATGA+AGG + chr1.2:65498890-65498909 None:intergenic 35.0%
AGTTGTTCATAGAGAGCTTA+GGG - chr1.2:65503595-65503614 MS.gene20800:CDS 35.0%
ATCAAACATTCACGTGTGAA+AGG - chr1.2:65501686-65501705 MS.gene20800:CDS 35.0%
ATCTCATACATAGGAATGGA+AGG - chr1.2:65499647-65499666 MS.gene20800:CDS 35.0%
ATGCTCTTTCTTGATAGGTT+TGG + chr1.2:65504729-65504748 None:intergenic 35.0%
ATGTACTCTAACTCATCTAG+TGG - chr1.2:65499713-65499732 MS.gene20800:CDS 35.0%
CAAGGTGAAATAGAAGAAAG+TGG - chr1.2:65504233-65504252 MS.gene20800:intron 35.0%
CATAAGACATGGATCTTGTT+GGG + chr1.2:65501921-65501940 None:intergenic 35.0%
CATTATTGGGTGAATGCTTT+AGG - chr1.2:65502217-65502236 MS.gene20800:intron 35.0%
CTAGAATCAACAGAATAGGA+GGG - chr1.2:65499936-65499955 MS.gene20800:CDS 35.0%
GACAATGCGAGTGATATAAT+CGG + chr1.2:65499993-65500012 None:intergenic 35.0%
GACACTCTTGATTGTAATGA+TGG - chr1.2:65501000-65501019 MS.gene20800:intron 35.0%
GAGACAGTGAATTATGAGTA+TGG - chr1.2:65503396-65503415 MS.gene20800:CDS 35.0%
GGAGACCAACTTAAAACAAA+TGG - chr1.2:65501291-65501310 MS.gene20800:intron 35.0%
GGAGATCTAATAAGGAATGA+GGG - chr1.2:65500136-65500155 MS.gene20800:CDS 35.0%
GTAGATTGTTCCAAGTCATT+AGG - chr1.2:65504042-65504061 MS.gene20800:intron 35.0%
GTGTTTGGATTAAGTATAGG+AGG + chr1.2:65502614-65502633 None:intergenic 35.0%
GTGTTTGTATCAAGTATAGG+AGG + chr1.2:65502478-65502497 None:intergenic 35.0%
GTTGTATTGGACTCTTGTAA+TGG - chr1.2:65501656-65501675 MS.gene20800:CDS 35.0%
TACAAGAAATGGGTATACCT+TGG + chr1.2:65499322-65499341 None:intergenic 35.0%
TAGAATCAACAGAATAGGAG+GGG - chr1.2:65499937-65499956 MS.gene20800:CDS 35.0%
TAGACACACACTTTCATCAT+TGG + chr1.2:65504144-65504163 None:intergenic 35.0%
TATCAGTGATCAAAGTTCAC+CGG - chr1.2:65503695-65503714 MS.gene20800:CDS 35.0%
TATGAGATTTGTGTCAAGTG+AGG + chr1.2:65499635-65499654 None:intergenic 35.0%
TCAGCTAGAATCAACAGAAT+AGG - chr1.2:65499932-65499951 MS.gene20800:CDS 35.0%
TCATATTTGGCTACCAAAGA+TGG - chr1.2:65500031-65500050 MS.gene20800:CDS 35.0%
TCCAACCAAACAACTTTACT+AGG + chr1.2:65503945-65503964 None:intergenic 35.0%
TCCTAGTAAAGTTGTTTGGT+TGG - chr1.2:65503941-65503960 MS.gene20800:CDS 35.0%
TGCTACCCCATTGATATTAT+GGG - chr1.2:65500229-65500248 MS.gene20800:CDS 35.0%
TGGAGATCTAATAAGGAATG+AGG - chr1.2:65500135-65500154 MS.gene20800:CDS 35.0%
TGTACTCTAACTCATCTAGT+GGG - chr1.2:65499714-65499733 MS.gene20800:CDS 35.0%
TGTGATCTAGGTTCATTTCT+TGG + chr1.2:65504113-65504132 None:intergenic 35.0%
TGTGCCCTATTTAACAACAT+TGG + chr1.2:65501365-65501384 None:intergenic 35.0%
TTCATCTTTCATGATCATGC+TGG - chr1.2:65498889-65498908 MS.gene20800:CDS 35.0%
TTGCTACCCCATTGATATTA+TGG - chr1.2:65500228-65500247 MS.gene20800:CDS 35.0%
TTGGATTAAGTATAGGAGGT+GGG + chr1.2:65502610-65502629 None:intergenic 35.0%
TTTGGATTAAGTATAGGAGG+TGG + chr1.2:65502611-65502630 None:intergenic 35.0%
! AAGATGAGAGATCCATTTTG+TGG + chr1.2:65500953-65500972 None:intergenic 35.0%
! ACCTAATGCCTTAAGGTTTT+GGG + chr1.2:65502772-65502791 None:intergenic 35.0%
! ACCTTAAGGCATTAGGTATA+TGG - chr1.2:65502775-65502794 MS.gene20800:intron 35.0%
! AGATGAGAGATCCATTTTGT+GGG + chr1.2:65500952-65500971 None:intergenic 35.0%
! AGGAGGATTAGTAAAATCCT+TGG + chr1.2:65504426-65504445 None:intergenic 35.0%
! ATGACACTGGAATGGTTTTT+GGG - chr1.2:65499780-65499799 MS.gene20800:CDS 35.0%
! CACAGGTTGGATATAGTATA+TGG + chr1.2:65499756-65499775 None:intergenic 35.0%
! CCTTAAGGCATTAGGTATAT+GGG - chr1.2:65502776-65502795 MS.gene20800:intron 35.0%
! GAAAGGTGTAGAAGTTGTAT+TGG - chr1.2:65501643-65501662 MS.gene20800:CDS 35.0%
! GTATTTGAAGTGGATGATAC+AGG - chr1.2:65501947-65501966 MS.gene20800:CDS 35.0%
! GTTGTGTTATTGTAGGCATA+TGG - chr1.2:65499072-65499091 MS.gene20800:intron 35.0%
! TACCTAATGCCTTAAGGTTT+TGG + chr1.2:65502773-65502792 None:intergenic 35.0%
! TTTTTATTACCGAACTGTCG+TGG - chr1.2:65499409-65499428 MS.gene20800:CDS 35.0%
!! ACTGACTTGTGATTCTCTTT+AGG + chr1.2:65501983-65502002 None:intergenic 35.0%
!! AGTTGATTTGTACCATCCAA+TGG - chr1.2:65501613-65501632 MS.gene20800:CDS 35.0%
!! GAAGAAAATAAAGAGTGCTG+AGG + chr1.2:65498958-65498977 None:intergenic 35.0%
!! TCTTGATAGGTTTGGTAATG+TGG + chr1.2:65504721-65504740 None:intergenic 35.0%
!!! ATTGTTGGGTTTTAAGTGAG+TGG + chr1.2:65502433-65502452 None:intergenic 35.0%
!!! GCGAAGGAAATTCACTTTTT+TGG - chr1.2:65499457-65499476 MS.gene20800:CDS 35.0%
AACAAGGGAGATAAGAGAGA+TGG - chr1.2:65504613-65504632 MS.gene20800:intron 40.0%
AACAAGTGGTATTAGTGCCT+TGG + chr1.2:65502671-65502690 None:intergenic 40.0%
AAGTATAGGAGGTGAGAACT+CGG + chr1.2:65502467-65502486 None:intergenic 40.0%
AAGTGTGGAACAATGTTGGA+AGG - chr1.2:65504163-65504182 MS.gene20800:intron 40.0%
ACAATTCGTACTGCTAGTTC+TGG - chr1.2:65503462-65503481 MS.gene20800:CDS 40.0%
ACACCTTTCTTCATTGCCAT+TGG + chr1.2:65501632-65501651 None:intergenic 40.0%
ACTTGACACAAGCAAGATTG+AGG - chr1.2:65501532-65501551 MS.gene20800:intron 40.0%
AGACATTGGAATTGTGGACA+AGG - chr1.2:65503314-65503333 MS.gene20800:intron 40.0%
AGAGAGATGGAGAAACACTA+TGG - chr1.2:65504626-65504645 MS.gene20800:intron 40.0%
AGGCACTAATACCACTTGTT+GGG - chr1.2:65502671-65502690 MS.gene20800:CDS 40.0%
AGGGAGAATCTTGGGTTTAT+GGG + chr1.2:65502577-65502596 None:intergenic 40.0%
AGTCTCACGTCACCTATAAA+TGG + chr1.2:65502407-65502426 None:intergenic 40.0%
AGTGTGGAACAATGTTGGAA+GGG - chr1.2:65504164-65504183 MS.gene20800:intron 40.0%
ATTAGGCTTCTTCCTGAGTT+CGG - chr1.2:65504059-65504078 MS.gene20800:intron 40.0%
ATTCACGTGTGAAAGGTGAT+AGG - chr1.2:65501693-65501712 MS.gene20800:CDS 40.0%
CAAAAACCATTCCAGTGTCA+TGG + chr1.2:65499781-65499800 None:intergenic 40.0%
CAAGATAAGCACGAAGATCA+TGG + chr1.2:65501183-65501202 None:intergenic 40.0%
CACACACTTTCATCATTGGA+AGG + chr1.2:65504140-65504159 None:intergenic 40.0%
CACTGTCTCATTCTCACATA+AGG + chr1.2:65503385-65503404 None:intergenic 40.0%
CAGTTGTTCATAGAGAGCTT+AGG - chr1.2:65503594-65503613 MS.gene20800:CDS 40.0%
CATCCAATGGCAATGAAGAA+AGG - chr1.2:65501626-65501645 MS.gene20800:CDS 40.0%
CCAACAAGATCCATGTCTTA+TGG - chr1.2:65501919-65501938 MS.gene20800:CDS 40.0%
CCATAAGACATGGATCTTGT+TGG + chr1.2:65501922-65501941 None:intergenic 40.0%
CCCATATACCTAATGCCTTA+AGG + chr1.2:65502779-65502798 None:intergenic 40.0%
CCTTTCAAAGCTATGGATCA+TGG - chr1.2:65503777-65503796 MS.gene20800:CDS 40.0%
CTCTTGTGGTTATGGAACAT+TGG + chr1.2:65502729-65502748 None:intergenic 40.0%
CTTTCTTCATTGCCATTGGA+TGG + chr1.2:65501628-65501647 None:intergenic 40.0%
GAGCTTAGGGATTAAAGTCA+AGG - chr1.2:65503608-65503627 MS.gene20800:CDS 40.0%
GCTAGAATCAACAGAATAGG+AGG - chr1.2:65499935-65499954 MS.gene20800:CDS 40.0%
GTACTCTAACTCATCTAGTG+GGG - chr1.2:65499715-65499734 MS.gene20800:CDS 40.0%
GTCTAAGTGTGGAACAATGT+TGG - chr1.2:65504159-65504178 MS.gene20800:intron 40.0%
GTCTATGTCTCTTGTGGTTA+TGG + chr1.2:65502737-65502756 None:intergenic 40.0%
GTCTCACATTGCCTATGAAT+AGG + chr1.2:65502830-65502849 None:intergenic 40.0%
GTCTCACGTCACCTATAAAT+GGG + chr1.2:65502406-65502425 None:intergenic 40.0%
TACTCTAACTCATCTAGTGG+GGG - chr1.2:65499716-65499735 MS.gene20800:CDS 40.0%
TATGAGTATGGATCAACCTC+AGG - chr1.2:65503408-65503427 MS.gene20800:CDS 40.0%
TGATTTATCCTCTCTCCTTG+AGG - chr1.2:65501586-65501605 MS.gene20800:CDS 40.0%
TGTTCAAGAGGGTTTAACCA+AGG - chr1.2:65504406-65504425 MS.gene20800:CDS 40.0%
TTCTAGGTACGTTTGATGCA+TGG - chr1.2:65503291-65503310 MS.gene20800:intron 40.0%
TTGGTCTCCAATTCTGAACT+TGG + chr1.2:65501280-65501299 None:intergenic 40.0%
TTGTTAACGAGCGGCTATAA+TGG - chr1.2:65501457-65501476 MS.gene20800:intron 40.0%
! AAGGCACTAATACCACTTGT+TGG - chr1.2:65502670-65502689 MS.gene20800:CDS 40.0%
! AATTGTGCCCAAGATTTGCT+AGG - chr1.2:65501316-65501335 MS.gene20800:intron 40.0%
! ACCCAAAACCTTAAGGCATT+AGG - chr1.2:65502768-65502787 MS.gene20800:intron 40.0%
! ATACCAACATGGTGTCAATG+AGG + chr1.2:65499115-65499134 None:intergenic 40.0%
! CATGACACTGGAATGGTTTT+TGG - chr1.2:65499779-65499798 MS.gene20800:CDS 40.0%
! TGAAAGTGTGTGTCTAAGTG+TGG - chr1.2:65504148-65504167 MS.gene20800:intron 40.0%
! TGACACTGGAATGGTTTTTG+GGG - chr1.2:65499781-65499800 MS.gene20800:CDS 40.0%
!! AACACTCTTGTGGTTAGTCT+TGG + chr1.2:65501828-65501847 None:intergenic 40.0%
!! ATGGCTACTTTGAGATCTCT+TGG - chr1.2:65504335-65504354 MS.gene20800:CDS 40.0%
!! CCATGATCCATAGCTTTGAA+AGG + chr1.2:65503780-65503799 None:intergenic 40.0%
!! GTTTGTGTTGGGTTTCTAGT+AGG + chr1.2:65502862-65502881 None:intergenic 40.0%
!! TTGGAAGGTACTTGTGATCT+AGG + chr1.2:65504125-65504144 None:intergenic 40.0%
!!! TAATGCCTTAAGGTTTTGGG+TGG + chr1.2:65502769-65502788 None:intergenic 40.0%
AACAAGTGGTTGCAATGTGC+TGG + chr1.2:65502537-65502556 None:intergenic 45.0%
AACTACATCCTCAAGGAGAG+AGG + chr1.2:65501597-65501616 None:intergenic 45.0%
AATTGGACAGATGCCAGTGA+AGG - chr1.2:65504577-65504596 MS.gene20800:intron 45.0%
ACTCACTTGAGGGAGAATCT+TGG + chr1.2:65502586-65502605 None:intergenic 45.0%
ACTTGGGATTGTGCAGTCAT+TGG - chr1.2:65502063-65502082 MS.gene20800:CDS 45.0%
AGAATGACATGTGAAGGCTC+AGG + chr1.2:65503540-65503559 None:intergenic 45.0%
AGCACATTGCAACCACTTGT+TGG - chr1.2:65502536-65502555 MS.gene20800:CDS 45.0%
AGTCTTCGGAGATGAGTTCT+AGG - chr1.2:65503718-65503737 MS.gene20800:CDS 45.0%
AGTTAGAGCATGGACTCAGA+AGG - chr1.2:65501787-65501806 MS.gene20800:CDS 45.0%
ATAATGCTCCTGACTCTCCT+CGG + chr1.2:65502203-65502222 None:intergenic 45.0%
ATCCAATTACCACCGAACTC+AGG + chr1.2:65504074-65504093 None:intergenic 45.0%
ATTAGTGCCTTGGTTCAGCT+TGG + chr1.2:65502661-65502680 None:intergenic 45.0%
ATTCCAGTGTCATGGTTCAC+AGG + chr1.2:65499773-65499792 None:intergenic 45.0%
CAGGAAGAAGCCTAATGACT+TGG + chr1.2:65504055-65504074 None:intergenic 45.0%
CATCTCCACCCAAAACCTTA+AGG - chr1.2:65502761-65502780 MS.gene20800:intron 45.0%
CCAATGTGAGAATGGTGAAG+AGG - chr1.2:65504373-65504392 MS.gene20800:CDS 45.0%
CCTCTTCACCATTCTCACAT+TGG + chr1.2:65504376-65504395 None:intergenic 45.0%
CGTTTGATGCATGGAGACAT+TGG - chr1.2:65503300-65503319 MS.gene20800:intron 45.0%
CTCACTTGAGGGAGAATCTT+GGG + chr1.2:65502585-65502604 None:intergenic 45.0%
CTCTCTCTCTCTCTCTCTTA+TGG + chr1.2:65502244-65502263 None:intergenic 45.0%
CTTCTCTGATGTTCACACCA+AGG - chr1.2:65499302-65499321 MS.gene20800:CDS 45.0%
GAAATCCATTCCAGTCTCAG+TGG + chr1.2:65504699-65504718 None:intergenic 45.0%
GAAGTGGATGATACAGGGAA+AGG - chr1.2:65501953-65501972 MS.gene20800:CDS 45.0%
GACAAGGAAGTTGGCAAAAG+AGG - chr1.2:65503330-65503349 MS.gene20800:intron 45.0%
GACACCATGTTGGTATCTCA+TGG - chr1.2:65499119-65499138 MS.gene20800:intron 45.0%
GAGAATTCTGTTGGCCAAGT+AGG - chr1.2:65502028-65502047 MS.gene20800:CDS 45.0%
GAGGGAGAATCTTGGGTTTA+TGG + chr1.2:65502578-65502597 None:intergenic 45.0%
GATCTTCGTGCTTATCTTGC+AGG - chr1.2:65501184-65501203 MS.gene20800:intron 45.0%
GCACATTGCAACCACTTGTT+GGG - chr1.2:65502537-65502556 MS.gene20800:CDS 45.0%
GCATGGAGACATTGGAATTG+TGG - chr1.2:65503308-65503327 MS.gene20800:intron 45.0%
GCTGTGAGAACTGTTCAAGA+GGG - chr1.2:65504395-65504414 MS.gene20800:CDS 45.0%
GGAAGTGGGATTCTAGTGTT+TGG + chr1.2:65502629-65502648 None:intergenic 45.0%
GGAATTGTGGACAAGGAAGT+TGG - chr1.2:65503321-65503340 MS.gene20800:intron 45.0%
GGCACATAACAGTTAGAGCA+TGG - chr1.2:65501777-65501796 MS.gene20800:CDS 45.0%
GGCAGGAAAAATGCAACTAG+AGG - chr1.2:65501553-65501572 MS.gene20800:intron 45.0%
GGCATCTGTCCAATTCATTG+TGG + chr1.2:65504572-65504591 None:intergenic 45.0%
GGGAGAATCTTGGGTTTATG+GGG + chr1.2:65502576-65502595 None:intergenic 45.0%
GTGACCATGAGATACCAACA+TGG + chr1.2:65499126-65499145 None:intergenic 45.0%
GTGTTAGCTGTCCCACAAAA+TGG - chr1.2:65500938-65500957 MS.gene20800:intron 45.0%
TAAGTAGTTCGAGATCGCGA+AGG - chr1.2:65499441-65499460 MS.gene20800:CDS 45.0%
TCAAAGTTCACCGGAGTCTT+CGG - chr1.2:65503704-65503723 MS.gene20800:CDS 45.0%
TCTTGCAAGGATCAAGCTGT+TGG - chr1.2:65500166-65500185 MS.gene20800:CDS 45.0%
TGGGGAATCTGAGGAAACAT+CGG - chr1.2:65502690-65502709 MS.gene20800:CDS 45.0%
TGTGAACCATGACACTGGAA+TGG - chr1.2:65499772-65499791 MS.gene20800:CDS 45.0%
TGTGGTGTCTATGTCTCTTG+TGG + chr1.2:65502743-65502762 None:intergenic 45.0%
TTGCCTCATTGACACCATGT+TGG - chr1.2:65499109-65499128 MS.gene20800:intron 45.0%
! AACATGGTGTCAATGAGGCA+AGG + chr1.2:65499110-65499129 None:intergenic 45.0%
! CTTGGTGTGAACATCAGAGA+AGG + chr1.2:65499304-65499323 None:intergenic 45.0%
! CTTTCTCTCAGCTTGTTCTG+TGG + chr1.2:65501125-65501144 None:intergenic 45.0%
! GCTTATCTTGCAGGCCTTAT+TGG - chr1.2:65501193-65501212 MS.gene20800:intron 45.0%
! GGCACTAATACCACTTGTTG+GGG - chr1.2:65502672-65502691 MS.gene20800:CDS 45.0%
! TTCCTGAGTTCGGTGGTAAT+TGG - chr1.2:65504069-65504088 MS.gene20800:intron 45.0%
!! AGGAGAGTCAGGAGCATTAT+TGG - chr1.2:65502203-65502222 MS.gene20800:intron 45.0%
!! GGAGAGTCAGGAGCATTATT+GGG - chr1.2:65502204-65502223 MS.gene20800:intron 45.0%
!!! GGTTTGGTTTTTGTCACCTG+AGG + chr1.2:65503427-65503446 None:intergenic 45.0%
!!! TAAGGTTTTGGGTGGAGATG+TGG + chr1.2:65502761-65502780 None:intergenic 45.0%
!!! AAATATTTTTATTAAATAAC+AGG - chr1.2:65500910-65500929 MS.gene20800:intron 5.0%
!!! TATTTGAATATTTTTTTTTA+TGG + chr1.2:65500600-65500619 None:intergenic 5.0%
ACAATCTGTTAGAGAGCCCG+AGG - chr1.2:65502183-65502202 MS.gene20800:intron 50.0%
ACTCGCATTGTCGATCGTCA+AGG - chr1.2:65500001-65500020 MS.gene20800:CDS 50.0%
AGAATAGGAGGGGTCTCTCT+TGG - chr1.2:65499947-65499966 MS.gene20800:CDS 50.0%
CAACCTGTGAACCATGACAC+TGG - chr1.2:65499767-65499786 MS.gene20800:CDS 50.0%
CAGTGTCATGGTTCACAGGT+TGG + chr1.2:65499769-65499788 None:intergenic 50.0%
CCACTTTGACCACGACAGTT+CGG + chr1.2:65499421-65499440 None:intergenic 50.0%
CGGTTGAGGGAGAGATTGTT+GGG + chr1.2:65502447-65502466 None:intergenic 50.0%
CTCGCATTGTCGATCGTCAA+GGG - chr1.2:65500002-65500021 MS.gene20800:CDS 50.0%
CTTGGTGGAAGAGTGGAAGT+GGG + chr1.2:65502643-65502662 None:intergenic 50.0%
GAACTCATCTCCGAAGACTC+CGG + chr1.2:65503717-65503736 None:intergenic 50.0%
GACACAAGCAAGATTGAGGC+AGG - chr1.2:65501536-65501555 MS.gene20800:intron 50.0%
GACAGATGCCAGTGAAGGAT+GGG - chr1.2:65504582-65504601 MS.gene20800:intron 50.0%
GGCTGTGAGAACTGTTCAAG+AGG - chr1.2:65504394-65504413 MS.gene20800:CDS 50.0%
GGGAATCTGAGGAAACATCG+GGG - chr1.2:65502692-65502711 MS.gene20800:CDS 50.0%
GGGGAATCTGAGGAAACATC+GGG - chr1.2:65502691-65502710 MS.gene20800:CDS 50.0%
TAATGCTCCTGACTCTCCTC+GGG + chr1.2:65502202-65502221 None:intergenic 50.0%
TCCTCAGATTCCCCAACAAG+TGG + chr1.2:65502685-65502704 None:intergenic 50.0%
TCGGTTGAGGGAGAGATTGT+TGG + chr1.2:65502448-65502467 None:intergenic 50.0%
TCTGTTGGCCAAGTAGGAAC+TGG - chr1.2:65502034-65502053 MS.gene20800:CDS 50.0%
TCTTCCACCAAGCTGAACCA+AGG - chr1.2:65502651-65502670 MS.gene20800:CDS 50.0%
TGAGGGAGCTGTATCTTGCA+AGG - chr1.2:65500153-65500172 MS.gene20800:CDS 50.0%
! ACCACTTGTTGGGGAATCTG+AGG - chr1.2:65502681-65502700 MS.gene20800:CDS 50.0%
! AGGATGGGTTTGAGGCAACA+AGG - chr1.2:65504597-65504616 MS.gene20800:intron 50.0%
! CATTGCAACCACTTGTTGGG+CGG - chr1.2:65502540-65502559 MS.gene20800:CDS 50.0%
! GAGGGGCTAACATGGAGTTT+TGG + chr1.2:65503510-65503529 None:intergenic 50.0%
! GGATGGGTTTGAGGCAACAA+GGG - chr1.2:65504598-65504617 MS.gene20800:intron 50.0%
!! GTGGTTGCAATGTGCTGGTT+CGG + chr1.2:65502532-65502551 None:intergenic 50.0%
!! TAGGAACTGGCTTGGGACTT+GGG - chr1.2:65502047-65502066 MS.gene20800:CDS 50.0%
AGGAGGTGAGAACTCGGTTG+AGG + chr1.2:65502461-65502480 None:intergenic 55.0%
AGGAGGTGGGAACTCACTTG+AGG + chr1.2:65502597-65502616 None:intergenic 55.0%
AGGCTTCTTCCTGAGTTCGG+TGG - chr1.2:65504062-65504081 MS.gene20800:intron 55.0%
AGTGCCTTGGTTCAGCTTGG+TGG + chr1.2:65502658-65502677 None:intergenic 55.0%
CCGAACTGTCGTGGTCAAAG+TGG - chr1.2:65499418-65499437 MS.gene20800:CDS 55.0%
CTCGGTGGAAGAGTGGAAGT+GGG + chr1.2:65502509-65502528 None:intergenic 55.0%
GACAAGCTGACCACTGAGAC+TGG - chr1.2:65504686-65504705 MS.gene20800:intron 55.0%
GCCTCAAACCCATCCTTCAC+TGG + chr1.2:65504593-65504612 None:intergenic 55.0%
GCTGACCACTGAGACTGGAA+TGG - chr1.2:65504691-65504710 MS.gene20800:intron 55.0%
GGACAGATGCCAGTGAAGGA+TGG - chr1.2:65504581-65504600 MS.gene20800:intron 55.0%
GGAGGTGAGAACTCGGTTGA+GGG + chr1.2:65502460-65502479 None:intergenic 55.0%
GGAGGTGGGAACTCACTTGA+GGG + chr1.2:65502596-65502615 None:intergenic 55.0%
GTCCCAAGCCAGTTCCTACT+TGG + chr1.2:65502045-65502064 None:intergenic 55.0%
TCCATGTTAGCCCCTCTCAG+AGG - chr1.2:65503514-65503533 MS.gene20800:CDS 55.0%
TGGCCAAGTAGGAACTGGCT+TGG - chr1.2:65502039-65502058 MS.gene20800:CDS 55.0%
! GCCAGTGAAGGATGGGTTTG+AGG - chr1.2:65504589-65504608 MS.gene20800:intron 55.0%
! GCTTGGTGGAAGAGTGGAAG+TGG + chr1.2:65502644-65502663 None:intergenic 55.0%
! GGCCAAGTAGGAACTGGCTT+GGG - chr1.2:65502040-65502059 MS.gene20800:CDS 55.0%
! GGTTCAGCTTGGTGGAAGAG+TGG + chr1.2:65502650-65502669 None:intergenic 55.0%
!! GTAGGAACTGGCTTGGGACT+TGG - chr1.2:65502046-65502065 MS.gene20800:CDS 55.0%
!! TGCAATGTGCTGGTTCGGCT+CGG + chr1.2:65502527-65502546 None:intergenic 55.0%
CCAACAGACCGCCCAACAAG+TGG + chr1.2:65502551-65502570 None:intergenic 60.0%
TAGAGAGCCCGAGGAGAGTC+AGG - chr1.2:65502192-65502211 MS.gene20800:intron 60.0%
TGAAGGCTCAGGCCTCTGAG+AGG + chr1.2:65503529-65503548 None:intergenic 60.0%
! AAGGCTCAGGCCTCTGAGAG+GGG + chr1.2:65503527-65503546 None:intergenic 60.0%
! CCACTTGTTGGGCGGTCTGT+TGG - chr1.2:65502548-65502567 MS.gene20800:CDS 60.0%
! GAAGGCTCAGGCCTCTGAGA+GGG + chr1.2:65503528-65503547 None:intergenic 60.0%
! GCCTCTGAGAGGGGCTAACA+TGG + chr1.2:65503518-65503537 None:intergenic 60.0%
! GCTCGGTGGAAGAGTGGAAG+TGG + chr1.2:65502510-65502529 None:intergenic 60.0%
!! AATGTGCTGGTTCGGCTCGG+TGG + chr1.2:65502524-65502543 None:intergenic 60.0%
!! GGTTCGGCTCGGTGGAAGAG+TGG + chr1.2:65502516-65502535 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 65498854 65504793 65498854 ID=MS.gene20800
chr1.2 mRNA 65498854 65504793 65498854 ID=MS.gene20800.t1;Parent=MS.gene20800
chr1.2 exon 65504737 65504793 65504737 ID=MS.gene20800.t1.exon1;Parent=MS.gene20800.t1
chr1.2 CDS 65504737 65504793 65504737 ID=cds.MS.gene20800.t1;Parent=MS.gene20800.t1
chr1.2 exon 65504324 65504560 65504324 ID=MS.gene20800.t1.exon2;Parent=MS.gene20800.t1
chr1.2 CDS 65504324 65504560 65504324 ID=cds.MS.gene20800.t1;Parent=MS.gene20800.t1
chr1.2 exon 65503386 65504051 65503386 ID=MS.gene20800.t1.exon3;Parent=MS.gene20800.t1
chr1.2 CDS 65503386 65504051 65503386 ID=cds.MS.gene20800.t1;Parent=MS.gene20800.t1
chr1.2 exon 65502310 65502715 65502310 ID=MS.gene20800.t1.exon4;Parent=MS.gene20800.t1
chr1.2 CDS 65502310 65502715 65502310 ID=cds.MS.gene20800.t1;Parent=MS.gene20800.t1
chr1.2 exon 65501563 65502131 65501563 ID=MS.gene20800.t1.exon5;Parent=MS.gene20800.t1
chr1.2 CDS 65501563 65502131 65501563 ID=cds.MS.gene20800.t1;Parent=MS.gene20800.t1
chr1.2 exon 65499175 65500350 65499175 ID=MS.gene20800.t1.exon6;Parent=MS.gene20800.t1
chr1.2 CDS 65499175 65500350 65499175 ID=cds.MS.gene20800.t1;Parent=MS.gene20800.t1
chr1.2 exon 65498854 65499060 65498854 ID=MS.gene20800.t1.exon7;Parent=MS.gene20800.t1
chr1.2 CDS 65498854 65499060 65498854 ID=cds.MS.gene20800.t1;Parent=MS.gene20800.t1
Gene Sequence

>MS.gene20800

ATGAATACTGGTTTATCAATGGCATTACTTCGACCTTCATCTTTCATGATCATGCTGGTACGTCTTTATATTTATGCGTTCATGCTATTTTTCTTCATGTTCCTCAGCACTCTTTATTTTCTTCGATTTGATTTGTAACAAAGATTAAGGAACAATTGAGATTTGTTATTGATGTCTTCAACTAGCGCATAGCTACACATAAATTTACGATATTATTTGTTGTGTTATTGTAGGCATATGGTGCACTAATAGTCCTTGCCTCATTGACACCATGTTGGTATCTCATGGTCACACATATTGAGAAAAGTGTGAATTTGCACTCAGCAAATATTGTGTCACAATTGCAATCAGAAATTGAGTACTCAGCTGAACTATTGCAACCAATGAAATCATCATCAACAAATTTATCTACATTATTGAGCTCAACCCTTAATTCTACTAATGTCACCTTCTCTGATGTTCACACCAAGGTATACCCATTTCTTGTATAATTTCCCTTCAAAACCATAAATATTTTGTTTGCTTATTTTTTATTATTTTTTATATCAAAATTATTTTTTATTACCGAACTGTCGTGGTCAAAGTGGTAAGTAGTTCGAGATCGCGAAGGAAATTCACTTTTTTGGAGCGAAAACTCTTAAATGTACTCTAGATTTGCGAAGGAATTAAGTTTTCGCGCCAGCGCGAAAAGAAAAAAAATATCTTTGTAGCTTTAATGGTTTAATTTATTTGCACTTTGTAGGTGGCTCCGTTATTATTTCAAGCATTGAAGACAATTCCTCACTTGACACAAATCTCATACATAGGAATGGAAGGTCTTTTTTTCACACACTACAATGATGGTGATCAAGTTCTAGCAATGTACTCTAACTCATCTAGTGGGGGTGCTTCAAACAAAACCATATACTATATCCAACCTGTGAACCATGACACTGGAATGGTTTTTGGGGAAGCCATAATATCTAACGACACTATCAATATTGATGCAAGTTGGATAAATGGAACAAATAATATTTCACATGAATTTGCATCATTGGGAACAAAGTTGAATAATGTTAGTGATCTTTTGTTCATGAATTCAGCTAGAATCAACAGAATAGGAGGGGTCTCTCTTGGATTTTCGACGAAAGCAATAACCGATTATATCACTCGCATTGTCGATCGTCAAGGGACAAAATCATATTTGGCTACCAAAGATGGAAAAGTTATTGTAAAAGGAATTCAAAATATCCGTTTGATGATTTTTAATGATAGTGTTTCAATTCAAGCTGTTAATGGTAATGGAGATCTAATAAGGAATGAGGGAGCTGTATCTTGCAAGGATCAAGCTGTTGGTTTTAGTTTGAATATTCATGATACTCAATATTTGATTCATTGCTACCCCATTGATATTATGGGAATAGAATCGGTACGTTTTTATATTTTTTGCATATTAGTTTGTTTGATTACGATGCAATTTTTTTTCAATTGATTCCAATAGTAGTATATTAACTAACTAAGAAAACAAGACCGTACTTTTGTACCCGAAAATACCAAATAGTACTTTGTACCCAAAAAATAATTTTACTACTTTCACAATACAATTTGCATATTAGTTCACACTTTAATATTTTTATACTATTTTCACAAAACATCTCTCTTGGTCTTGTATCTTATAATTGTTTTCTAATTTTATTTTTTATGCTACATTTTTCTCACTCTATTTCATTATTTATTTAAATAATCACCGTTTATAAACACATTCCATAAAAAAAAATATTCAAATACACATTGTTTACAACATTTATTTTAGATAAGTTTTAGCAACATTATTTCTAACTCATACGTGAAATTGATGTGTTCCCATAATTTGAAAATTTAACACACATTAATTGACATGAATTTCACTCAATAAGAAAGTGAACATTGTGTTTTTTTGTCGAACATAACCTTAATAGTTTTAACTCAAAGAAGAAGAAAAAAAAATAATCAAGTAATAATGACTTCAATTAACATGTGTTTAATTATCCAAATATGTTCACAAATGTCGTATGTTTCAATTAACATGTACGTAACTAAATATTTTTATTAAATAACAGGTGCATGTGTTAGCTGTCCCACAAAATGGATCTCTCATCTTTAATCCAAGTCATAAAGAAAAGGGATTGACACTCTTGATTGTAATGATGGTGATGATATTTATTGCTATCTTGAGTTTTCTATTCTTGAATGTTGGAGTGACAAAGAGAGAAATGCATTTGTGTGCATCACTCATACAACAAAAAGAAGCCACAGAACAAGCTGAGAGAAAGAATACCAATAAGAGTCTTGCTTTTGCTACTGCTAGCCATGATCTTCGTGCTTATCTTGCAGGCCTTATTGGTTTGATTGAAATGTCCTCTAAATTAGTTGTTACTAATTCAAAATTGGACACCAATTTGAAACCAAGTTCAGAATTGGAGACCAACTTAAAACAAATGGATAATTGTGCCCAAGATTTGCTAGGTAAATCATCATAGGTTCATGCTACCAATGTTGTTAAATAGGGCACATTATAGTGTTACAACATAATTGAATTTAAACAAATTGTTGTTGTTCCGTGATATACTATTTAGTACAAAATATTGTTAACGAGCGGCTATAATGGCATCATTAACTCATTTTTATTTTGTTACAATCTTAGGACTGTTGAATTCTATACTTGACACAAGCAAGATTGAGGCAGGAAAAATGCAACTAGAGGAAGAGGAATTTGATTTATCCTCTCTCCTTGAGGATGTAGTTGATTTGTACCATCCAATGGCAATGAAGAAAGGTGTAGAAGTTGTATTGGACTCTTGTAATGGCTCAGTGATCAAACATTCACGTGTGAAAGGTGATAGGAGAAAATTGAAGCAAGTTTTGTGTAACTTGCTTAGCAATGCTGTTAAATTTACTGATGAAGGGCACATAACAGTTAGAGCATGGACTCAGAAGGCCAAATTGCTAAAATCCAAGACTAACCACAAGAGTGTTATGAAATCTTTGTCTTGGTTGTTTAATAAGAAAGACAAAGAATGTGAAGACATAGAAGCTGTGAATTTAGCCCAACAAGATCCATGTCTTATGGATTTTGTATTTGAAGTGGATGATACAGGGAAAGGTATTCCTAAAGAGAATCACAAGTCAGTGTTTGAGAATTATGTTCAAGTTAAAGAGAATTCTGTTGGCCAAGTAGGAACTGGCTTGGGACTTGGGATTGTGCAGTCATTGGTAAGCATATTTTTTATCTATTCAAATAATTGTGAGAAAATTTCGAGTTTATAGTTCACTTAGTTGTCAATTCATTTAGAGGTCATACTAAATTGAATACAATCTGTTAGAGAGCCCGAGGAGAGTCAGGAGCATTATTGGGTGAATGCTTTAGGACCATAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACGTCACGTCTCGATATATGTGTCACCTCTCTTATATATCAAACATTTTACCTATTTATAGACGATAAGAGTCTTAACCACTCACACATTTTACCCATTTATAGGTGACGTGAGACTTAACCACTCACTTAAAACCCAACAATCTCTCCCTCAACCGAGTTCTCACCTCCTATACTTGATACAAACACTAGAAAATCCCACTTCCACTCTTCCACCGAGCCGAACCAGCACATTGCAACCACTTGTTGGGCGGTCTGTTGGAACCCCATAAACCCAAGATTCTCCCTCAAGTGAGTTCCCACCTCCTATACTTAATCCAAACACTAGAATCCCACTTCCACTCTTCCACCAAGCTGAACCAAGGCACTAATACCACTTGTTGGGGAATCTGAGGAAACATCGGGGACAACAACGAACCAATGTTCCATAACCACAAGAGACATAGACACCACATCTCCACCCAAAACCTTAAGGCATTAGGTATATGGGTCACCTCTCTTACGTATCCAACATTTTACCTATTCATAGGCAATGTGAGACTTAATCACTCCTACTAGAAACCCAACACAAACAATATGACTCTAATATGTATCTGTTTGAATATTGAATCACAGTTCATTATGATGAACCTTGATTCATTCTAATGAAACATTACTAAACTTAATGTAGTTAACAACTTTTTGGTCAATTTTGTATAACCAATCACTTCTCTTTTGTCTTTTAATATATGACTTGAATCTTGAATTATTTTGAAGTTCATATATGATATAGAAAGGTTAGCTTATAATTTTGTTATGTCACTTGATTTTTACTTAAAAATAAATTTTTATTGACAATGTAGCTTATGTTTCATAATAAGATTCGATTCACAATTCGAAAACAACATCTTCCAATTCATGATTTGAATCTTAATAGTATGCATACATTAGTCCTCCCTTTTAGTTGTAAAAAAATCATTTAATAAAAATGTCAAATGGTTTTTTCTAGGTACGTTTGATGCATGGAGACATTGGAATTGTGGACAAGGAAGTTGGCAAAAGAGGAACATGCTTCAAGTTCAATGTGCTTCTCACCTTATGTGAGAATGAGACAGTGAATTATGAGTATGGATCAACCTCAGGTGACAAAAACCAAACCCTAGAGAAAAAATTAACAATTCGTACTGCTAGTTCTGGTTCAAGCATTTGTTCTTTGAGTCCAAAACTCCATGTTAGCCCCTCTCAGAGGCCTGAGCCTTCACATGTCATTCTTTACATTACTGATGAGGAAAGAAGAAGAACTTCGCAGTTGTTCATAGAGAGCTTAGGGATTAAAGTCAAGGTTGTGAAGAGTAGAAATCATCTAATTCATACTCTCAAGAAGATCAAAAAAGAAAAGGGTGACGATATCAGTGATCAAAGTTCACCGGAGTCTTCGGAGATGAGTTCTAGGTGTACATCTTATAACTCTTCTTGTAGTAGAAGAGTTCCTTTCAAAGCTATGGATCATGGAAATGAATATCTATCTTCAATGTTCAAGAAGAAAAACAATGGAGCTGCACCAAGTTTTGTTTTGATTATCATTGATGCAAATGCAGGACCATTTTCTAAGCTTTGTAAGATTGTGTCAAACTTCAAGAAAGATCTTCTCAATCCTAGTAAAGTTGTTTGGTTGGAAAAGCCTTTTGAGAGTAGTGTTGATTACCAAGCAATTGATCAAGATGATATTGTGATATCAAAACCATTTCATGGTAGTAGATTGTTCCAAGTCATTAGGCTTCTTCCTGAGTTCGGTGGTAATTGGATAAGCAATTCTAGTAAACCAAGAAATGAACCTAGATCACAAGTACCTTCCAATGATGAAAGTGTGTGTCTAAGTGTGGAACAATGTTGGAAGGGAACACAAAAGTCCTATGTTAATCTGGGAAGAAAAGGTTCTGTTCATCAAGGTGAAATAGAAGAAAGTGGAGAATCAAGCAATCCTAAACCATTAAGTGGAAAGAAGTTTTTGGTTGTTGATGATAGTCCTATGCTGAGAAAGATTTGTATGGCTACTTTGAGATCTCTTGGTGTGACTACTATTGACCAATGTGAGAATGGTGAAGAGGCTGTGAGAACTGTTCAAGAGGGTTTAACCAAGGATTTTACTAATCCTCCTTATGATTATATCTTAATGGATTGTCAGGTAAGTAATGATTATTTGAGAGCATTTTTTTTCATGCTTGCAAGTCTTTTGCAATATAACTTAAGCTTTATATTTTGGTCAATGTGCTTAACTTTTCCACAATGAATTGGACAGATGCCAGTGAAGGATGGGTTTGAGGCAACAAGGGAGATAAGAGAGATGGAGAAACACTATGGTCTTCACATTTCTATCATTGCATTATCTGCTGAAATTGACAAGCTGACCACTGAGACTGGAATGGATTTCCACATTACCAAACCTATCAAGAAAGAGCATTTACTCAAAGCTATTGCGTACATAGAAAATAGTGACATAATGTAA
Protein sequence

>MS.gene20800.t1

MNTGLSMALLRPSSFMIMLAYGALIVLASLTPCWYLMVTHIEKSVNLHSANIVSQLQSEIEYSAELLQPMKSSSTNLSTLLSSTLNSTNVTFSDVHTKVAPLLFQALKTIPHLTQISYIGMEGLFFTHYNDGDQVLAMYSNSSSGGASNKTIYYIQPVNHDTGMVFGEAIISNDTINIDASWINGTNNISHEFASLGTKLNNVSDLLFMNSARINRIGGVSLGFSTKAITDYITRIVDRQGTKSYLATKDGKVIVKGIQNIRLMIFNDSVSIQAVNGNGDLIRNEGAVSCKDQAVGFSLNIHDTQYLIHCYPIDIMGIESVHVLAVPQNGSLIFNPSHKEKGLTLLIVMMVMIFIAILSFLFLNVGVTKREMHLCASLIQQKEATEQAERKNTNKSLAFATASHDLRAYLAGLIGLIEMSSKLVVTNSKLDTNLKPSSELETNLKQMDNCAQDLLGLLNSILDTSKIEAGKMQLEEEEFDLSSLLEDVVDLYHPMAMKKGVEVVLDSCNGSVIKHSRVKGDRRKLKQVLCNLLSNAVKFTDEGHITVRAWTQKAKLLKSKTNHKSVMKSLSWLFNKKDKECEDIEAVNLAQQDPCLMDFVFEVDDTGKGIPKENHKSVFENYVQVKENSVGQVGTGLGLGIVQSLVRLMHGDIGIVDKEVGKRGTCFKFNVLLTLCENETVNYEYGSTSGDKNQTLEKKLTIRTASSGSSICSLSPKLHVSPSQRPEPSHVILYITDEERRRTSQLFIESLGIKVKVVKSRNHLIHTLKKIKKEKGDDISDQSSPESSEMSSRCTSYNSSCSRRVPFKAMDHGNEYLSSMFKKKNNGAAPSFVLIIIDANAGPFSKLCKIVSNFKKDLLNPSKVVWLEKPFESSVDYQAIDQDDIVISKPFHGSRLFQVIRLLPEFGGNWISNSSKPRNEPRSQVPSNDESVCLSVEQCWKGTQKSYVNLGRKGSVHQGEIEESGESSNPKPLSGKKFLVVDDSPMLRKICMATLRSLGVTTIDQCENGEEAVRTVQEGLTKDFTNPPYDYILMDCQMPVKDGFEATREIREMEKHYGLHISIIALSAEIDKLTTETGMDFHITKPIKKEHLLKAIAYIENSDIM