AlfalfaGEDB | MS.gene21083

M. sativa cultivar XinJiangDaYe / MS.gene21083

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0046983 GO:0097159 GO:1901363
PFAM: PF00319.21

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene21083.t1	XP_003591253.1	94.9	156	8	0	1	156	1	156	7.10E-74	286.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene21083.t1	Q9FJK3	46.8	156	82	1	1	155	1	156	1.8e-30	133.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene21083.t1	G7IAC3	94.9	156	8	0	1	156	1	156	5.1e-74	286.6

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene21083.t1	TF	MADS-M-type

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene21083.t1	MTR_1g084950	94.872	156	8	0	1	156	1	156	3.65e-99	282
MS.gene21083.t1	MTR_5g047580	85.897	156	22	0	1	156	1	156	9.00e-95	271
MS.gene21083.t1	MTR_7g011950	78.205	156	34	0	1	156	1	156	1.82e-79	232
MS.gene21083.t1	MTR_5g047560	76.282	156	21	1	1	156	1	140	1.26e-78	229
MS.gene21083.t1	MTR_4g028720	76.923	156	36	0	1	156	1	156	5.04e-78	229
MS.gene21083.t1	MTR_1g077320	75.641	156	38	0	1	156	1	156	2.01e-77	227
MS.gene21083.t1	MTR_1g077390	69.231	156	48	0	1	156	1	156	3.03e-75	221
MS.gene21083.t1	MTR_1g077300	73.718	156	39	1	1	156	1	154	1.11e-68	205
MS.gene21083.t1	MTR_1g090783	63.399	153	56	0	3	155	2	154	4.20e-65	196
MS.gene21083.t1	MTR_1g090697	59.355	155	63	0	1	155	1	155	1.96e-63	192

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene21083.t1	AT5G26630	44.872	156	85	1	1	155	1	156	8.81e-38	129
MS.gene21083.t1	AT5G48670	46.795	156	82	1	1	155	1	156	2.39e-35	125
MS.gene21083.t1	AT3G05860	40.268	149	88	1	1	148	1	149	4.37e-33	116
MS.gene21083.t1	AT1G65330	40.909	154	90	1	3	155	2	155	5.52e-33	118
MS.gene21083.t1	AT3G05860	40.268	149	88	1	1	148	1	149	1.78e-32	115
MS.gene21083.t1	AT3G05860	40.268	149	88	1	1	148	1	149	2.71e-32	115
MS.gene21083.t1	AT1G65300	38.312	154	94	1	3	155	2	155	3.28e-31	113
MS.gene21083.t1	AT5G26650	35.948	153	97	1	4	155	2	154	2.71e-27	104
MS.gene21083.t1	AT5G27960	34.641	153	99	1	4	155	2	154	3.46e-25	98.6
MS.gene21083.t1	AT1G31630	30.464	151	103	2	3	152	2	151	1.80e-24	97.1

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Find 25 sgRNAs with CRISPR-Local

Find 33 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTCTTTCAAATCCGAAA+CGG	0.563009	1.4:-68297201	None:intergenic
AAGAGAGCTTCCTATTGCAG+AGG	0.626560	1.4:+68297066	MS.gene21083:CDS
AAGGCACGACAATCGTGAGA+AGG	0.638977	1.4:+68297121	MS.gene21083:CDS
AGATCTAGAGAAGGCTAAAC+AGG	0.406038	1.4:+68296989	MS.gene21083:CDS
AGCGAACTCACCATTCTATG+CGG	0.710886	1.4:+68296909	MS.gene21083:CDS
AGCTGGAATACCGCATAGAA+TGG	0.529502	1.4:-68296919	None:intergenic
AGGCTAAACAGGTGATTGAG+AGG	0.629216	1.4:+68297000	MS.gene21083:CDS
CTCTGATGATTCGGCAAGAA+AGG	0.409977	1.4:+68296845	MS.gene21083:CDS
CTTTGGTAATCCTCTGCAAT+AGG	0.405146	1.4:-68297076	None:intergenic
GATAACAAGATTGATGCACT+CGG	0.692256	1.4:+68297257	MS.gene21083:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACTCTTTCAAATCCGAAA+CGG	-	chr1.4:68297204-68297223	None:intergenic	30.0%
CATGAAAAACAAAAAGCTGC+CGG	+	chr1.4:68297169-68297188	MS.gene21083:CDS	35.0%
GATAACAAGATTGATGCACT+CGG	+	chr1.4:68297257-68297276	MS.gene21083:CDS	35.0%
TTGGAAATTATAGCACAAGC+TGG	-	chr1.4:68296939-68296958	None:intergenic	35.0%
AAAAACAAAAAGCTGCCGGA+TGG	+	chr1.4:68297173-68297192	MS.gene21083:CDS	40.0%
AGATCTAGAGAAGGCTAAAC+AGG	+	chr1.4:68296989-68297008	MS.gene21083:CDS	40.0%
GGGAACATCTTCAAAAGCAA+AGG	+	chr1.4:68297102-68297121	MS.gene21083:CDS	40.0%
TTGAAGATGTTCCCTAGCTT+TGG	-	chr1.4:68297096-68297115	None:intergenic	40.0%
AAGAGAGCTTCCTATTGCAG+AGG	+	chr1.4:68297066-68297085	MS.gene21083:CDS	45.0%
AGCGAACTCACCATTCTATG+CGG	+	chr1.4:68296909-68296928	MS.gene21083:CDS	45.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.4	gene	68296813	68297283	68296813	ID=MS.gene21083
chr1.4	mRNA	68296813	68297283	68296813	ID=MS.gene21083.t1;Parent=MS.gene21083
chr1.4	exon	68296813	68297283	68296813	ID=MS.gene21083.t1.exon1;Parent=MS.gene21083.t1
chr1.4	CDS	68296813	68297283	68296813	ID=cds.MS.gene21083.t1;Parent=MS.gene21083.t1

Gene Sequence

>MS.gene21083

ATGACTAGGAAGAAGGTGAAACTTGCTTTTATCTCTGATGATTCGGCAAGAAAGGCAACCTATAAGAAAAGAAAAAAGGGTATCATCAAAAAGGTGAGCGAACTCACCATTCTATGCGGTATTCCAGCTTGTGCTATAATTTCCAATCCTTTTGATTCTAAAACAGAGGTGTGGCCAGATCTAGAGAAGGCTAAACAGGTGATTGAGAGGTATCAAAATTCATCGGTGAAAGATGAAACAAAGAATGTGAACCAAGAGAGCTTCCTATTGCAGAGGATTACCAAAGCTAGGGAACATCTTCAAAAGCAAAGGCACGACAATCGTGAGAAGGAGTTGAACGTTCTTATGATTGAGTACATGAAAAACAAAAAGCTGCCGGATGGTTTGACCGTTTCGGATTTGAAAGAGTTTGATAAGCTAATTGAGAAAAATATGAAGGAGATTGATAACAAGATTGATGCACTCGGTTGA

Protein sequence

>MS.gene21083.t1

MTRKKVKLAFISDDSARKATYKKRKKGIIKKVSELTILCGIPACAIISNPFDSKTEVWPDLEKAKQVIERYQNSSVKDETKNVNQESFLLQRITKAREHLQKQRHDNREKELNVLMIEYMKNKKLPDGLTVSDLKEFDKLIEKNMKEIDNKIDALG