Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21249.t1 | XP_024632961.1 | 94.8 | 538 | 20 | 1 | 1 | 530 | 1 | 538 | 5.50E-286 | 993 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21249.t1 | Q9SZL8 | 28.0 | 468 | 314 | 8 | 50 | 515 | 72 | 518 | 7.1e-56 | 219.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21249.t1 | D3YBB9 | 84.4 | 487 | 76 | 0 | 44 | 530 | 76 | 562 | 1.3e-244 | 855.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene21249.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21249.t1 | MTR_0558s0020 | 89.068 | 311 | 19 | 1 | 1 | 311 | 1 | 296 | 0.0 | 578 |
| MS.gene21249.t1 | MTR_1g083640 | 93.706 | 286 | 18 | 0 | 1 | 286 | 1 | 286 | 0.0 | 565 |
| MS.gene21249.t1 | MTR_8g446020 | 77.170 | 311 | 16 | 2 | 1 | 311 | 1 | 256 | 1.62e-166 | 473 |
| MS.gene21249.t1 | MTR_2g014100 | 88.142 | 253 | 21 | 2 | 1 | 252 | 1 | 245 | 1.82e-159 | 455 |
| MS.gene21249.t1 | MTR_6g090505 | 88.608 | 237 | 27 | 0 | 81 | 317 | 1 | 237 | 3.27e-152 | 441 |
| MS.gene21249.t1 | MTR_6g090505 | 64.815 | 108 | 11 | 2 | 406 | 511 | 224 | 306 | 7.00e-34 | 132 |
| MS.gene21249.t1 | MTR_0337s0040 | 73.455 | 275 | 19 | 2 | 1 | 275 | 1 | 221 | 2.13e-134 | 390 |
| MS.gene21249.t1 | MTR_3g008240 | 83.945 | 218 | 20 | 1 | 1 | 218 | 1 | 203 | 1.62e-128 | 374 |
| MS.gene21249.t1 | MTR_4g040430 | 84.404 | 218 | 14 | 2 | 1 | 218 | 1 | 198 | 3.97e-128 | 373 |
| MS.gene21249.t1 | MTR_5g071590 | 86.413 | 184 | 22 | 1 | 1 | 184 | 1 | 181 | 6.45e-114 | 337 |
| MS.gene21249.t1 | MTR_1g055240 | 94.366 | 142 | 8 | 0 | 107 | 248 | 3 | 144 | 1.35e-94 | 286 |
| MS.gene21249.t1 | MTR_0019s0290 | 88.889 | 153 | 14 | 1 | 100 | 249 | 8 | 160 | 5.97e-94 | 284 |
| MS.gene21249.t1 | MTR_1281s0010 | 95.413 | 109 | 5 | 0 | 35 | 143 | 1 | 109 | 1.25e-69 | 219 |
| MS.gene21249.t1 | MTR_6g051425 | 30.539 | 334 | 196 | 7 | 56 | 368 | 22 | 340 | 2.59e-40 | 149 |
| MS.gene21249.t1 | MTR_8g046060 | 79.167 | 96 | 11 | 2 | 1 | 95 | 91 | 178 | 7.56e-38 | 139 |
| MS.gene21249.t1 | MTR_0337s0060 | 68.317 | 101 | 20 | 1 | 463 | 563 | 21 | 109 | 7.92e-37 | 137 |
| MS.gene21249.t1 | MTR_4g008820 | 76.842 | 95 | 7 | 1 | 1 | 95 | 125 | 204 | 1.52e-35 | 142 |
| MS.gene21249.t1 | MTR_1g070355 | 24.919 | 309 | 207 | 7 | 3 | 307 | 24 | 311 | 5.28e-21 | 97.1 |
| MS.gene21249.t1 | MTR_0337s0050 | 80.556 | 36 | 7 | 0 | 275 | 310 | 14 | 49 | 3.73e-14 | 68.2 |
| MS.gene21249.t1 | MTR_0402s0040 | 25.946 | 185 | 118 | 4 | 65 | 249 | 40 | 205 | 7.86e-14 | 74.3 |
| MS.gene21249.t1 | MTR_1g013060 | 29.680 | 219 | 135 | 8 | 56 | 272 | 29 | 230 | 1.71e-13 | 70.5 |
| MS.gene21249.t1 | MTR_4g035820 | 23.019 | 265 | 179 | 5 | 56 | 315 | 80 | 324 | 7.28e-12 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21249.t1 | AT4G38180 | 27.966 | 472 | 309 | 8 | 50 | 515 | 72 | 518 | 6.43e-60 | 213 |
| MS.gene21249.t1 | AT3G06250 | 25.941 | 478 | 284 | 10 | 39 | 514 | 178 | 587 | 4.11e-43 | 164 |
| MS.gene21249.t1 | AT3G06250 | 25.941 | 478 | 284 | 10 | 39 | 514 | 178 | 587 | 4.11e-43 | 164 |
| MS.gene21249.t1 | AT3G06250 | 25.941 | 478 | 284 | 10 | 39 | 514 | 178 | 587 | 4.11e-43 | 164 |
| MS.gene21249.t1 | AT4G15090 | 25.597 | 461 | 316 | 9 | 66 | 523 | 66 | 502 | 1.39e-41 | 160 |
| MS.gene21249.t1 | AT4G15090 | 25.597 | 461 | 316 | 9 | 66 | 523 | 66 | 502 | 1.39e-41 | 160 |
| MS.gene21249.t1 | AT4G15090 | 25.597 | 461 | 316 | 9 | 66 | 523 | 66 | 502 | 1.39e-41 | 160 |
| MS.gene21249.t1 | AT4G15090 | 25.597 | 461 | 316 | 9 | 66 | 523 | 66 | 502 | 1.39e-41 | 160 |
| MS.gene21249.t1 | AT4G15090 | 25.597 | 461 | 316 | 9 | 66 | 523 | 66 | 502 | 1.39e-41 | 160 |
| MS.gene21249.t1 | AT1G76320 | 26.078 | 464 | 301 | 11 | 55 | 512 | 1 | 428 | 1.00e-40 | 157 |
| MS.gene21249.t1 | AT1G76320 | 26.078 | 464 | 301 | 11 | 55 | 512 | 1 | 428 | 2.03e-40 | 156 |
| MS.gene21249.t1 | AT1G76320 | 26.078 | 464 | 301 | 11 | 55 | 512 | 1 | 428 | 2.45e-40 | 156 |
| MS.gene21249.t1 | AT1G76320 | 26.078 | 464 | 301 | 11 | 55 | 512 | 1 | 428 | 2.45e-40 | 156 |
| MS.gene21249.t1 | AT1G10240 | 26.517 | 445 | 289 | 13 | 65 | 498 | 62 | 479 | 4.55e-39 | 152 |
| MS.gene21249.t1 | AT1G10240 | 26.517 | 445 | 289 | 13 | 65 | 498 | 62 | 479 | 4.55e-39 | 152 |
| MS.gene21249.t1 | AT5G18960 | 25.466 | 483 | 287 | 13 | 37 | 514 | 197 | 611 | 8.63e-38 | 149 |
| MS.gene21249.t1 | AT5G18960 | 25.466 | 483 | 287 | 13 | 37 | 514 | 197 | 611 | 8.63e-38 | 149 |
| MS.gene21249.t1 | AT5G28530 | 26.757 | 441 | 279 | 12 | 56 | 478 | 60 | 474 | 1.80e-37 | 147 |
| MS.gene21249.t1 | AT5G28530 | 26.757 | 441 | 279 | 12 | 56 | 478 | 60 | 474 | 2.42e-37 | 147 |
| MS.gene21249.t1 | AT5G28530 | 26.757 | 441 | 279 | 12 | 56 | 478 | 60 | 474 | 2.42e-37 | 147 |
| MS.gene21249.t1 | AT3G22170 | 22.661 | 481 | 331 | 8 | 48 | 523 | 67 | 511 | 5.13e-37 | 147 |
| MS.gene21249.t1 | AT3G22170 | 22.661 | 481 | 331 | 8 | 48 | 523 | 67 | 511 | 5.13e-37 | 147 |
| MS.gene21249.t1 | AT4G38170 | 26.460 | 291 | 203 | 4 | 251 | 538 | 24 | 306 | 1.43e-35 | 140 |
| MS.gene21249.t1 | AT2G27110 | 28.621 | 290 | 197 | 5 | 229 | 515 | 36 | 318 | 1.46e-35 | 142 |
| MS.gene21249.t1 | AT2G27110 | 28.028 | 289 | 200 | 3 | 229 | 515 | 181 | 463 | 1.59e-35 | 142 |
| MS.gene21249.t1 | AT2G27110 | 28.028 | 289 | 200 | 3 | 229 | 515 | 181 | 463 | 1.59e-35 | 142 |
| MS.gene21249.t1 | AT1G80010 | 25.749 | 501 | 322 | 16 | 57 | 540 | 101 | 568 | 1.62e-35 | 142 |
| MS.gene21249.t1 | AT4G19990 | 24.664 | 446 | 287 | 10 | 57 | 499 | 27 | 426 | 2.44e-32 | 132 |
| MS.gene21249.t1 | AT4G19990 | 24.664 | 446 | 287 | 10 | 57 | 499 | 41 | 440 | 2.98e-32 | 132 |
| MS.gene21249.t1 | AT4G19990 | 24.664 | 446 | 287 | 10 | 57 | 499 | 27 | 426 | 3.02e-32 | 132 |
| MS.gene21249.t1 | AT4G19990 | 24.664 | 446 | 287 | 10 | 57 | 499 | 27 | 426 | 3.02e-32 | 132 |
| MS.gene21249.t1 | AT2G32250 | 24.593 | 492 | 297 | 12 | 24 | 511 | 13 | 434 | 4.45e-32 | 132 |
| MS.gene21249.t1 | AT4G19990 | 24.664 | 446 | 287 | 10 | 57 | 499 | 27 | 426 | 4.57e-32 | 132 |
| MS.gene21249.t1 | AT4G19990 | 24.664 | 446 | 287 | 10 | 57 | 499 | 27 | 426 | 4.57e-32 | 132 |
| MS.gene21249.t1 | AT2G32250 | 24.593 | 492 | 297 | 12 | 24 | 511 | 13 | 434 | 5.33e-32 | 132 |
| MS.gene21249.t1 | AT2G32250 | 24.593 | 492 | 297 | 12 | 24 | 511 | 13 | 434 | 5.33e-32 | 132 |
| MS.gene21249.t1 | AT2G32250 | 24.593 | 492 | 297 | 12 | 24 | 511 | 13 | 434 | 5.33e-32 | 132 |
| MS.gene21249.t1 | AT2G32250 | 24.593 | 492 | 297 | 12 | 24 | 511 | 13 | 434 | 5.97e-32 | 131 |
| MS.gene21249.t1 | AT2G32250 | 24.593 | 492 | 297 | 12 | 24 | 511 | 13 | 434 | 5.97e-32 | 131 |
| MS.gene21249.t1 | AT2G32250 | 24.837 | 459 | 273 | 11 | 57 | 511 | 3 | 393 | 1.12e-31 | 130 |
| MS.gene21249.t1 | AT2G32250 | 24.837 | 459 | 273 | 11 | 57 | 511 | 3 | 393 | 1.36e-31 | 130 |
| MS.gene21249.t1 | AT4G19990 | 29.104 | 268 | 183 | 4 | 235 | 499 | 106 | 369 | 2.34e-30 | 126 |
| MS.gene21249.t1 | AT1G52520 | 23.937 | 447 | 299 | 10 | 57 | 500 | 91 | 499 | 3.15e-30 | 126 |
| MS.gene21249.t1 | AT5G28530 | 23.898 | 431 | 241 | 15 | 56 | 478 | 60 | 411 | 2.11e-18 | 89.4 |
| MS.gene21249.t1 | AT5G28530 | 23.898 | 431 | 241 | 15 | 56 | 478 | 60 | 411 | 2.35e-18 | 89.4 |
Find 71 sgRNAs with CRISPR-Local
Find 147 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATGCTGAGTTGGACTTTA+AGG | 0.133287 | 5.1:+52361843 | MS.gene21249:CDS |
| TAAATTTCAGCTGCCTTTAT+TGG | 0.156227 | 5.1:+52361253 | MS.gene21249:intron |
| CTTTAGTCATTTCAACATTA+TGG | 0.194287 | 5.1:+52361801 | MS.gene21249:CDS |
| AATCGTCTGTGGTTTCTTAT+TGG | 0.195298 | 5.1:-52361380 | None:intergenic |
| TCTGTTGTTGGCCTGTTGTT+AGG | 0.292589 | 5.1:-52360212 | None:intergenic |
| TTACTTCTCGAAATGATCTA+AGG | 0.311482 | 5.1:-52360403 | None:intergenic |
| CAACTAGATTATTCTCTATT+CGG | 0.323831 | 5.1:+52360719 | MS.gene21249:CDS |
| TTGAAGATCTTGGAGTTCTT+AGG | 0.331625 | 5.1:+52362261 | MS.gene21249:CDS |
| GCATACGATTTGCGTAAGTT+TGG | 0.338878 | 5.1:-52361657 | None:intergenic |
| GCCGATATTTATTGTTTGTT+CGG | 0.341758 | 5.1:-52360769 | None:intergenic |
| ATGATTGTCAAAACCAATAA+AGG | 0.357876 | 5.1:-52361266 | None:intergenic |
| AACAATAAATATCGGCCATT+AGG | 0.388497 | 5.1:+52360776 | MS.gene21249:CDS |
| ACCGAACAAACAATAAATAT+CGG | 0.389395 | 5.1:+52360768 | MS.gene21249:CDS |
| GAGAACGTCTTATGAAGTTA+TGG | 0.394356 | 5.1:+52360478 | MS.gene21249:CDS |
| GAAGGCCTACCTCAGACTTT+AGG | 0.402909 | 5.1:+52361626 | MS.gene21249:CDS |
| GTCTTATGAAGTTATGGGTC+AGG | 0.415385 | 5.1:+52360484 | MS.gene21249:CDS |
| GAAGTTATGGGTCAGGGAGT+TGG | 0.426260 | 5.1:+52360491 | MS.gene21249:CDS |
| CGTTATGTTTGTAACAAAGA+AGG | 0.427485 | 5.1:+52360164 | MS.gene21249:CDS |
| AAAACACCTGGAAAACTATT+CGG | 0.428349 | 5.1:-52361439 | None:intergenic |
| CGAGAAGTAAATGAAGTTCA+AGG | 0.430014 | 5.1:+52360416 | MS.gene21249:CDS |
| TCCATGATTCTTTATTGCTA+GGG | 0.444266 | 5.1:-52360001 | None:intergenic |
| TTCCATGATTCTTTATTGCT+AGG | 0.445442 | 5.1:-52360002 | None:intergenic |
| GAAAGGGTTGGTTGTAAAGC+TGG | 0.447509 | 5.1:+52360281 | MS.gene21249:CDS |
| TATGCATTGGTCTTCAGCTT+GGG | 0.450920 | 5.1:+52361675 | MS.gene21249:CDS |
| ATGTGTATAAGATATATAGA+TGG | 0.452819 | 5.1:+52360333 | MS.gene21249:CDS |
| ACATCAACTTCATCTGATAG+TGG | 0.459514 | 5.1:+52359876 | MS.gene21249:CDS |
| GACCGCATCAGCTGACTGTT+GGG | 0.462628 | 5.1:-52361895 | None:intergenic |
| GCTCTTATAAATTCTAAAGC+TGG | 0.462891 | 5.1:+52360446 | MS.gene21249:CDS |
| ACCTGTGGACTGTCTGTTGT+TGG | 0.465317 | 5.1:-52360224 | None:intergenic |
| AGAACGTCTTATGAAGTTAT+GGG | 0.466325 | 5.1:+52360479 | MS.gene21249:CDS |
| GTTTACTTAATCCTAACAAC+AGG | 0.470860 | 5.1:+52360201 | MS.gene21249:CDS |
| CGCTTTAAAACATATTGTCC+AGG | 0.471916 | 5.1:-52362318 | None:intergenic |
| GTATGCATTGGTCTTCAGCT+TGG | 0.479582 | 5.1:+52361674 | MS.gene21249:CDS |
| TTTAAGTCTGAAAACCGAAA+AGG | 0.483010 | 5.1:-52360530 | None:intergenic |
| CATTCTTTGAAGACAATACC+TGG | 0.489494 | 5.1:+52362300 | MS.gene21249:CDS |
| ACATTATGGTTCAGAGAATG+AGG | 0.494022 | 5.1:+52361815 | MS.gene21249:CDS |
| GGACCGCATCAGCTGACTGT+TGG | 0.496835 | 5.1:-52361896 | None:intergenic |
| CCCCTAGCAATAAAGAATCA+TGG | 0.497001 | 5.1:+52360000 | MS.gene21249:CDS |
| TTACAACCAACCCTTTCCTC+AGG | 0.505082 | 5.1:-52360275 | None:intergenic |
| AGCTGGAATATATTTGAAGC+TGG | 0.507410 | 5.1:+52360298 | MS.gene21249:CDS |
| GAGGGATAATCATGCTGAGT+TGG | 0.508852 | 5.1:+52361834 | MS.gene21249:CDS |
| ACAAAACAAGAAATCTGATA+AGG | 0.511435 | 5.1:+52360130 | MS.gene21249:CDS |
| CTAAGGTAACACGAATGCTC+TGG | 0.517941 | 5.1:-52360386 | None:intergenic |
| GTCAGCATGAATCATTGCTA+GGG | 0.522802 | 5.1:-52359961 | None:intergenic |
| GGTAATTATGCATATAACAC+TGG | 0.523547 | 5.1:+52360068 | MS.gene21249:CDS |
| TAACAAAGAAGGTTTCAAGA+AGG | 0.525236 | 5.1:+52360175 | MS.gene21249:CDS |
| TAAGATATATAGATGGGATG+TGG | 0.528498 | 5.1:+52360340 | MS.gene21249:CDS |
| TGGGCTTTGTTCATGGCACA+TGG | 0.532868 | 5.1:+52361465 | MS.gene21249:CDS |
| GAATGCTCTGGTTTATGTAA+TGG | 0.534744 | 5.1:-52360374 | None:intergenic |
| CCATGATTCTTTATTGCTAG+GGG | 0.537011 | 5.1:-52360000 | None:intergenic |
| TGTCAGCATGAATCATTGCT+AGG | 0.540740 | 5.1:-52359962 | None:intergenic |
| AATCGAACAAGTGAGTGGTC+TGG | 0.543268 | 5.1:-52361778 | None:intergenic |
| AACAAAGAAGGTTTCAAGAA+GGG | 0.545537 | 5.1:+52360176 | MS.gene21249:CDS |
| GTTATGGGTCAGGGAGTTGG+AGG | 0.547221 | 5.1:+52360494 | MS.gene21249:CDS |
| AACACAATAACGCACTAGCC+TGG | 0.552106 | 5.1:-52361411 | None:intergenic |
| AAGATCTTGGAGTTCTTAGG+TGG | 0.553166 | 5.1:+52362264 | MS.gene21249:CDS |
| GGCCTACCTCAGACTTTAGG+TGG | 0.565384 | 5.1:+52361629 | MS.gene21249:CDS |
| ATCCCAACAGTCAGCTGATG+CGG | 0.597403 | 5.1:+52361893 | MS.gene21249:CDS |
| CTTACGCAAATCGTATGCAT+TGG | 0.597846 | 5.1:+52361662 | MS.gene21249:CDS |
| TGTGTATAAGATATATAGAT+GGG | 0.601002 | 5.1:+52360334 | MS.gene21249:CDS |
| TCACTGATTCATGCTGAGAG+TGG | 0.606950 | 5.1:+52359921 | MS.gene21249:CDS |
| TCTTATGAAGTTATGGGTCA+GGG | 0.609153 | 5.1:+52360485 | MS.gene21249:CDS |
| GCCAACAACAGACAGTCCAC+AGG | 0.619933 | 5.1:+52360223 | MS.gene21249:CDS |
| TTCACAAACTCAATAACCTG+TGG | 0.626760 | 5.1:-52360239 | None:intergenic |
| CATTATGGTTCAGAGAATGA+GGG | 0.643278 | 5.1:+52361816 | MS.gene21249:CDS |
| TGGTCTGTATAAATCGTCTG+TGG | 0.650424 | 5.1:-52361391 | None:intergenic |
| GACAAGCCACCTAAAGTCTG+AGG | 0.653221 | 5.1:-52361635 | None:intergenic |
| TAAAGAATCGAACAAGTGAG+TGG | 0.654901 | 5.1:-52361783 | None:intergenic |
| TCAGCATGAATCATTGCTAG+GGG | 0.681156 | 5.1:-52359960 | None:intergenic |
| AGCCACCTAAAGTCTGAGGT+AGG | 0.684957 | 5.1:-52361631 | None:intergenic |
| ACAGACGATTTATACAGACC+AGG | 0.720235 | 5.1:+52361393 | MS.gene21249:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTGATGAGTTAAATAATT+TGG | + | chr5.1:52361534-52361553 | MS.gene21249:CDS | 15.0% |
| !! | ACATACTTATTAGAATACTT+AGG | + | chr5.1:52361067-52361086 | MS.gene21249:intron | 20.0% |
| !! | ATGTGTATAAGATATATAGA+TGG | + | chr5.1:52360333-52360352 | MS.gene21249:CDS | 20.0% |
| !! | TGAATATCATAGTAAAAAGA+TGG | - | chr5.1:52360647-52360666 | None:intergenic | 20.0% |
| !! | TGTGTATAAGATATATAGAT+GGG | + | chr5.1:52360334-52360353 | MS.gene21249:CDS | 20.0% |
| !!! | AAAGAGATTGAAGATTTTTA+TGG | + | chr5.1:52360047-52360066 | MS.gene21249:CDS | 20.0% |
| !!! | AATCAGATTTTGACTATAAT+TGG | + | chr5.1:52361575-52361594 | MS.gene21249:CDS | 20.0% |
| !!! | ATCAGATTTTGACTATAATT+GGG | + | chr5.1:52361576-52361595 | MS.gene21249:CDS | 20.0% |
| !!! | ATGATGATAAATTGTTTTGA+TGG | + | chr5.1:52361604-52361623 | MS.gene21249:CDS | 20.0% |
| !!! | TTAATTTCATTAAGTTGTTC+TGG | + | chr5.1:52360837-52360856 | MS.gene21249:intron | 20.0% |
| !!! | TTCTTATAATTTGTGATTAC+AGG | + | chr5.1:52361130-52361149 | MS.gene21249:intron | 20.0% |
| ! | ACAAAACAAGAAATCTGATA+AGG | + | chr5.1:52360130-52360149 | MS.gene21249:CDS | 25.0% |
| ! | ACCGAACAAACAATAAATAT+CGG | + | chr5.1:52360768-52360787 | MS.gene21249:CDS | 25.0% |
| ! | AGTAAAAAACACTAACCTAA+TGG | - | chr5.1:52360794-52360813 | None:intergenic | 25.0% |
| ! | ATGATTGTCAAAACCAATAA+AGG | - | chr5.1:52361269-52361288 | None:intergenic | 25.0% |
| ! | CAAACTTAAATGATGTTGAT+TGG | + | chr5.1:52360991-52361010 | MS.gene21249:intron | 25.0% |
| ! | CAACTAGATTATTCTCTATT+CGG | + | chr5.1:52360719-52360738 | MS.gene21249:CDS | 25.0% |
| ! | CATAATAGTATTTGAAGGAA+AGG | - | chr5.1:52361975-52361994 | None:intergenic | 25.0% |
| ! | CTTTAGTCATTTCAACATTA+TGG | + | chr5.1:52361801-52361820 | MS.gene21249:CDS | 25.0% |
| ! | TCTTACTTATTTGAACTACA+CGG | + | chr5.1:52360913-52360932 | MS.gene21249:intron | 25.0% |
| ! | TTCCTTCAAATACTATTATG+AGG | + | chr5.1:52361975-52361994 | MS.gene21249:intron | 25.0% |
| !! | AACTTTGAAAAACTTCTCAA+AGG | - | chr5.1:52362022-52362041 | None:intergenic | 25.0% |
| !! | ATAACACTGGATTTTCTATT+AGG | + | chr5.1:52360081-52360100 | MS.gene21249:CDS | 25.0% |
| !! | CAAAGTTTTCACAATTGATA+AGG | + | chr5.1:52362035-52362054 | MS.gene21249:intron | 25.0% |
| !! | TGTTGTATTTTGTTCTGATA+TGG | + | chr5.1:52361224-52361243 | MS.gene21249:intron | 25.0% |
| !! | TTAACCATGTTGTTTGTTTA+GGG | + | chr5.1:52360938-52360957 | MS.gene21249:intron | 25.0% |
| !! | TTTAACCATGTTGTTTGTTT+AGG | + | chr5.1:52360937-52360956 | MS.gene21249:intron | 25.0% |
| !!! | AAGACATAGCTAGTATTTTT+TGG | + | chr5.1:52360681-52360700 | MS.gene21249:CDS | 25.0% |
| !!! | ATTTATATTTTGAACTGCCT+AGG | + | chr5.1:52361015-52361034 | MS.gene21249:intron | 25.0% |
| !!! | TGATAAATTGTTTTGATGGA+AGG | + | chr5.1:52361608-52361627 | MS.gene21249:CDS | 25.0% |
| AAAACACCTGGAAAACTATT+CGG | - | chr5.1:52361442-52361461 | None:intergenic | 30.0% | |
| AAATCCCTAAACAAACAACA+TGG | - | chr5.1:52360945-52360964 | None:intergenic | 30.0% | |
| AACAAAGAAGGTTTCAAGAA+GGG | + | chr5.1:52360176-52360195 | MS.gene21249:CDS | 30.0% | |
| AACAATAAATATCGGCCATT+AGG | + | chr5.1:52360776-52360795 | MS.gene21249:CDS | 30.0% | |
| AATAAATGCAAAGCAAGAAG+GGG | - | chr5.1:52361938-52361957 | None:intergenic | 30.0% | |
| AGAACGTCTTATGAAGTTAT+GGG | + | chr5.1:52360479-52360498 | MS.gene21249:CDS | 30.0% | |
| ATCATGATCTTCAAAACTTG+GGG | - | chr5.1:52362142-52362161 | None:intergenic | 30.0% | |
| CGTTATGTTTGTAACAAAGA+AGG | + | chr5.1:52360164-52360183 | MS.gene21249:CDS | 30.0% | |
| CTCCTCATAATAGTATTTGA+AGG | - | chr5.1:52361980-52361999 | None:intergenic | 30.0% | |
| CTTACTTATTTGAACTACAC+GGG | + | chr5.1:52360914-52360933 | MS.gene21249:intron | 30.0% | |
| CTTCAAATACTATTATGAGG+AGG | + | chr5.1:52361978-52361997 | MS.gene21249:intron | 30.0% | |
| GAATAAATGCAAAGCAAGAA+GGG | - | chr5.1:52361939-52361958 | None:intergenic | 30.0% | |
| GAGAATGCAAAGAAAAATCT+TGG | + | chr5.1:52361490-52361509 | MS.gene21249:CDS | 30.0% | |
| GATCATGATCTTCAAAACTT+GGG | - | chr5.1:52362143-52362162 | None:intergenic | 30.0% | |
| GCCGATATTTATTGTTTGTT+CGG | - | chr5.1:52360772-52360791 | None:intergenic | 30.0% | |
| GGTAATTATGCATATAACAC+TGG | + | chr5.1:52360068-52360087 | MS.gene21249:CDS | 30.0% | |
| GTTTACTTAATCCTAACAAC+AGG | + | chr5.1:52360201-52360220 | MS.gene21249:CDS | 30.0% | |
| TAAATTTCAGCTGCCTTTAT+TGG | + | chr5.1:52361253-52361272 | MS.gene21249:intron | 30.0% | |
| TAACAAAGAAGGTTTCAAGA+AGG | + | chr5.1:52360175-52360194 | MS.gene21249:CDS | 30.0% | |
| TAAGATATATAGATGGGATG+TGG | + | chr5.1:52360340-52360359 | MS.gene21249:CDS | 30.0% | |
| TAAGTTTGTCTCAAACCAAA+TGG | - | chr5.1:52360979-52360998 | None:intergenic | 30.0% | |
| TCCATGATTCTTTATTGCTA+GGG | - | chr5.1:52360004-52360023 | None:intergenic | 30.0% | |
| TGAATAAATGCAAAGCAAGA+AGG | - | chr5.1:52361940-52361959 | None:intergenic | 30.0% | |
| TTACTTCTCGAAATGATCTA+AGG | - | chr5.1:52360406-52360425 | None:intergenic | 30.0% | |
| TTCCATGATTCTTTATTGCT+AGG | - | chr5.1:52360005-52360024 | None:intergenic | 30.0% | |
| TTTAAGTCTGAAAACCGAAA+AGG | - | chr5.1:52360533-52360552 | None:intergenic | 30.0% | |
| ! | TATGATGATGCTGATAATGA+CGG | + | chr5.1:52362069-52362088 | MS.gene21249:intron | 30.0% |
| !! | ATCATGATCGATTTGATGAA+AGG | + | chr5.1:52362154-52362173 | MS.gene21249:intron | 30.0% |
| !! | GCTCTTATAAATTCTAAAGC+TGG | + | chr5.1:52360446-52360465 | MS.gene21249:CDS | 30.0% |
| !!! | GACAATATGTTTTAAAGCGT+TGG | + | chr5.1:52362322-52362341 | MS.gene21249:CDS | 30.0% |
| !!! | TAGTGTTTTTTACTTCTCTC+AGG | + | chr5.1:52360800-52360819 | MS.gene21249:intron | 30.0% |
| AATCGTCTGTGGTTTCTTAT+TGG | - | chr5.1:52361383-52361402 | None:intergenic | 35.0% | |
| AATTCGTCAAAAAGAGATGG+TGG | + | chr5.1:52360568-52360587 | MS.gene21249:CDS | 35.0% | |
| ACATCAACTTCATCTGATAG+TGG | + | chr5.1:52359876-52359895 | MS.gene21249:CDS | 35.0% | |
| ACATTATGGTTCAGAGAATG+AGG | + | chr5.1:52361815-52361834 | MS.gene21249:CDS | 35.0% | |
| AGTAAAAAGATGGTTTCGAG+AGG | - | chr5.1:52360637-52360656 | None:intergenic | 35.0% | |
| ATGTCGTATGTTTGAGAACA+GGG | + | chr5.1:52362218-52362237 | MS.gene21249:intron | 35.0% | |
| CATTATGGTTCAGAGAATGA+GGG | + | chr5.1:52361816-52361835 | MS.gene21249:CDS | 35.0% | |
| CCATGATTCTTTATTGCTAG+GGG | - | chr5.1:52360003-52360022 | None:intergenic | 35.0% | |
| CGAGAAGTAAATGAAGTTCA+AGG | + | chr5.1:52360416-52360435 | MS.gene21249:CDS | 35.0% | |
| CGATCATGATCTTCAAAACT+TGG | - | chr5.1:52362144-52362163 | None:intergenic | 35.0% | |
| CTTGCTTTGCATTTATTCAC+AGG | + | chr5.1:52361941-52361960 | MS.gene21249:intron | 35.0% | |
| GAAAGAAAAACCTGAGGAAA+GGG | + | chr5.1:52360265-52360284 | MS.gene21249:CDS | 35.0% | |
| GAAAGTGAAAGAAAAACCTG+AGG | + | chr5.1:52360259-52360278 | MS.gene21249:CDS | 35.0% | |
| GACAATTCGTCAAAAAGAGA+TGG | + | chr5.1:52360565-52360584 | MS.gene21249:CDS | 35.0% | |
| GAGAACGTCTTATGAAGTTA+TGG | + | chr5.1:52360478-52360497 | MS.gene21249:CDS | 35.0% | |
| GTAAAAAGATGGTTTCGAGA+GGG | - | chr5.1:52360636-52360655 | None:intergenic | 35.0% | |
| TAAAGAATCGAACAAGTGAG+TGG | - | chr5.1:52361786-52361805 | None:intergenic | 35.0% | |
| TAAGACCTATAGTCAATCCT+AGG | - | chr5.1:52360898-52360917 | None:intergenic | 35.0% | |
| TCCAAAACATCAACATTCGA+AGG | - | chr5.1:52362096-52362115 | None:intergenic | 35.0% | |
| TCTTATGAAGTTATGGGTCA+GGG | + | chr5.1:52360485-52360504 | MS.gene21249:CDS | 35.0% | |
| TGAAAGAAAAACCTGAGGAA+AGG | + | chr5.1:52360264-52360283 | MS.gene21249:CDS | 35.0% | |
| TTCACAAACTCAATAACCTG+TGG | - | chr5.1:52360242-52360261 | None:intergenic | 35.0% | |
| TTGAAGATCTTGGAGTTCTT+AGG | + | chr5.1:52362261-52362280 | MS.gene21249:CDS | 35.0% | |
| ! | AGCTGGAATATATTTGAAGC+TGG | + | chr5.1:52360298-52360317 | MS.gene21249:CDS | 35.0% |
| ! | AGTTTTCCAGGTGTTTTTCA+TGG | + | chr5.1:52361445-52361464 | MS.gene21249:CDS | 35.0% |
| ! | ATGATGATGCTGATAATGAC+GGG | + | chr5.1:52362070-52362089 | MS.gene21249:intron | 35.0% |
| ! | ATTTAGTTTACGCATTGCTG+AGG | + | chr5.1:52361101-52361120 | MS.gene21249:intron | 35.0% |
| ! | CATTCTTTGAAGACAATACC+TGG | + | chr5.1:52362300-52362319 | MS.gene21249:CDS | 35.0% |
| ! | GAATGCTCTGGTTTATGTAA+TGG | - | chr5.1:52360377-52360396 | None:intergenic | 35.0% |
| ! | GTTTTCCAGGTGTTTTTCAT+GGG | + | chr5.1:52361446-52361465 | MS.gene21249:CDS | 35.0% |
| ! | TCAATTCCGAATAGTTTTCC+AGG | + | chr5.1:52361433-52361452 | MS.gene21249:CDS | 35.0% |
| ! | TCTTTCAATGCTTTTCTTCG+TGG | + | chr5.1:52361745-52361764 | MS.gene21249:CDS | 35.0% |
| !! | CGCTTTAAAACATATTGTCC+AGG | - | chr5.1:52362321-52362340 | None:intergenic | 35.0% |
| !!! | CATCGAAAGAGTGTTTTGTT+TGG | + | chr5.1:52361286-52361305 | MS.gene21249:CDS | 35.0% |
| !!! | GCTAGTATTTTTTGGTCAGA+TGG | + | chr5.1:52360689-52360708 | MS.gene21249:CDS | 35.0% |
| !!! | TCGACATGTTTTGAAGATCT+TGG | + | chr5.1:52362251-52362270 | MS.gene21249:CDS | 35.0% |
| !!! | TTTTTCATGGGCTTTGTTCA+TGG | + | chr5.1:52361458-52361477 | MS.gene21249:CDS | 35.0% |
| AACTGCCTAGGATTGACTAT+AGG | + | chr5.1:52360890-52360909 | MS.gene21249:intron | 40.0% | |
| AAGATCTTGGAGTTCTTAGG+TGG | + | chr5.1:52362264-52362283 | MS.gene21249:CDS | 40.0% | |
| ACAGACGATTTATACAGACC+AGG | + | chr5.1:52361393-52361412 | MS.gene21249:CDS | 40.0% | |
| ATGAGGAGGACACAACAAAA+GGG | + | chr5.1:52361992-52362011 | MS.gene21249:intron | 40.0% | |
| CATGTCGTATGTTTGAGAAC+AGG | + | chr5.1:52362217-52362236 | MS.gene21249:intron | 40.0% | |
| CCCCTAGCAATAAAGAATCA+TGG | + | chr5.1:52360000-52360019 | MS.gene21249:CDS | 40.0% | |
| CTTACGCAAATCGTATGCAT+TGG | + | chr5.1:52361662-52361681 | MS.gene21249:CDS | 40.0% | |
| GCATACGATTTGCGTAAGTT+TGG | - | chr5.1:52361660-52361679 | None:intergenic | 40.0% | |
| GTCAGCATGAATCATTGCTA+GGG | - | chr5.1:52359964-52359983 | None:intergenic | 40.0% | |
| GTCTTATGAAGTTATGGGTC+AGG | + | chr5.1:52360484-52360503 | MS.gene21249:CDS | 40.0% | |
| TATGAGGAGGACACAACAAA+AGG | + | chr5.1:52361991-52362010 | MS.gene21249:intron | 40.0% | |
| TCACACAAGACAAAATGCCT+AGG | - | chr5.1:52361035-52361054 | None:intergenic | 40.0% | |
| TCAGCATGAATCATTGCTAG+GGG | - | chr5.1:52359963-52359982 | None:intergenic | 40.0% | |
| TGGTCTGTATAAATCGTCTG+TGG | - | chr5.1:52361394-52361413 | None:intergenic | 40.0% | |
| TGTCAGCATGAATCATTGCT+AGG | - | chr5.1:52359965-52359984 | None:intergenic | 40.0% | |
| TGTCGTATGTTTGAGAACAG+GGG | + | chr5.1:52362219-52362238 | MS.gene21249:intron | 40.0% | |
| ! | AGGGGTGTACTTGTTTACAA+TGG | - | chr5.1:52361920-52361939 | None:intergenic | 40.0% |
| ! | ATTTTCTCGCTTCTGCCATT+TGG | + | chr5.1:52360961-52360980 | MS.gene21249:intron | 40.0% |
| ! | CAGTACATTTTGAACTGCCT+AGG | + | chr5.1:52360878-52360897 | MS.gene21249:intron | 40.0% |
| ! | GCACAGAGAATCTTCCTTTT+CGG | + | chr5.1:52360516-52360535 | MS.gene21249:CDS | 40.0% |
| ! | GCCTTCGAATGTTGATGTTT+TGG | + | chr5.1:52362092-52362111 | MS.gene21249:intron | 40.0% |
| ! | GTCAAGTCACATTTTACAGC+TGG | + | chr5.1:52361697-52361716 | MS.gene21249:CDS | 40.0% |
| ! | TCATGCTGAGTTGGACTTTA+AGG | + | chr5.1:52361843-52361862 | MS.gene21249:CDS | 40.0% |
| !! | TATGCATTGGTCTTCAGCTT+GGG | + | chr5.1:52361675-52361694 | MS.gene21249:CDS | 40.0% |
| !!! | AGACAGCAGCTACTTTTGAT+TGG | + | chr5.1:52361329-52361348 | MS.gene21249:CDS | 40.0% |
| AACACAATAACGCACTAGCC+TGG | - | chr5.1:52361414-52361433 | None:intergenic | 45.0% | |
| AATCGAACAAGTGAGTGGTC+TGG | - | chr5.1:52361781-52361800 | None:intergenic | 45.0% | |
| CAAAGCCCATGAAAAACACC+TGG | - | chr5.1:52361454-52361473 | None:intergenic | 45.0% | |
| CTAAGGTAACACGAATGCTC+TGG | - | chr5.1:52360389-52360408 | None:intergenic | 45.0% | |
| GAAAAACCTGAGGAAAGGGT+TGG | + | chr5.1:52360269-52360288 | MS.gene21249:CDS | 45.0% | |
| GAGGGATAATCATGCTGAGT+TGG | + | chr5.1:52361834-52361853 | MS.gene21249:CDS | 45.0% | |
| TTACAACCAACCCTTTCCTC+AGG | - | chr5.1:52360278-52360297 | None:intergenic | 45.0% | |
| ! | CGTCAAAAAGAGATGGTGGT+TGG | + | chr5.1:52360572-52360591 | MS.gene21249:CDS | 45.0% |
| ! | TCTGTTGTTGGCCTGTTGTT+AGG | - | chr5.1:52360215-52360234 | None:intergenic | 45.0% |
| !! | GAAAGGGTTGGTTGTAAAGC+TGG | + | chr5.1:52360281-52360300 | MS.gene21249:CDS | 45.0% |
| !! | GTATGCATTGGTCTTCAGCT+TGG | + | chr5.1:52361674-52361693 | MS.gene21249:CDS | 45.0% |
| !! | TCACTGATTCATGCTGAGAG+TGG | + | chr5.1:52359921-52359940 | MS.gene21249:CDS | 45.0% |
| ATCCCAACAGTCAGCTGATG+CGG | + | chr5.1:52361893-52361912 | MS.gene21249:CDS | 50.0% | |
| GAAGGCCTACCTCAGACTTT+AGG | + | chr5.1:52361626-52361645 | MS.gene21249:CDS | 50.0% | |
| GAAGTTATGGGTCAGGGAGT+TGG | + | chr5.1:52360491-52360510 | MS.gene21249:CDS | 50.0% | |
| GACAAGCCACCTAAAGTCTG+AGG | - | chr5.1:52361638-52361657 | None:intergenic | 50.0% | |
| ! | ACCTGTGGACTGTCTGTTGT+TGG | - | chr5.1:52360227-52360246 | None:intergenic | 50.0% |
| ! | AGCCACCTAAAGTCTGAGGT+AGG | - | chr5.1:52361634-52361653 | None:intergenic | 50.0% |
| !! | TGGGCTTTGTTCATGGCACA+TGG | + | chr5.1:52361465-52361484 | MS.gene21249:CDS | 50.0% |
| GACCGCATCAGCTGACTGTT+GGG | - | chr5.1:52361898-52361917 | None:intergenic | 55.0% | |
| GCCAACAACAGACAGTCCAC+AGG | + | chr5.1:52360223-52360242 | MS.gene21249:CDS | 55.0% | |
| GGCCTACCTCAGACTTTAGG+TGG | + | chr5.1:52361629-52361648 | MS.gene21249:CDS | 55.0% | |
| GTTATGGGTCAGGGAGTTGG+AGG | + | chr5.1:52360494-52360513 | MS.gene21249:CDS | 55.0% | |
| GGACCGCATCAGCTGACTGT+TGG | - | chr5.1:52361899-52361918 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 52359867 | 52362349 | 52359867 | ID=MS.gene21249 |
| chr5.1 | mRNA | 52359867 | 52362349 | 52359867 | ID=MS.gene21249.t1;Parent=MS.gene21249 |
| chr5.1 | exon | 52359867 | 52360797 | 52359867 | ID=MS.gene21249.t1.exon1;Parent=MS.gene21249.t1 |
| chr5.1 | CDS | 52359867 | 52360797 | 52359867 | ID=cds.MS.gene21249.t1;Parent=MS.gene21249.t1 |
| chr5.1 | exon | 52361263 | 52361921 | 52361263 | ID=MS.gene21249.t1.exon2;Parent=MS.gene21249.t1 |
| chr5.1 | CDS | 52361263 | 52361921 | 52361263 | ID=cds.MS.gene21249.t1;Parent=MS.gene21249.t1 |
| chr5.1 | exon | 52362239 | 52362349 | 52362239 | ID=MS.gene21249.t1.exon3;Parent=MS.gene21249.t1 |
| chr5.1 | CDS | 52362239 | 52362349 | 52362239 | ID=cds.MS.gene21249.t1;Parent=MS.gene21249.t1 |
| Gene Sequence |
| Protein sequence |
