Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21352.t1 | XP_003591640.1 | 97.3 | 522 | 14 | 0 | 1 | 522 | 1 | 522 | 1.20E-286 | 995.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21352.t1 | Q3ECP0 | 54.6 | 527 | 221 | 6 | 7 | 521 | 5 | 525 | 1.2e-151 | 538.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21352.t1 | G7I2Y6 | 97.3 | 522 | 14 | 0 | 1 | 522 | 1 | 522 | 8.3e-287 | 995.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene21352.t1 | TF | BSD |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21352.t1 | MTR_1g090110 | 97.318 | 522 | 14 | 0 | 1 | 522 | 1 | 522 | 0.0 | 1053 |
MS.gene21352.t1 | MTR_6g071555 | 90.787 | 521 | 40 | 2 | 1 | 520 | 1 | 514 | 0.0 | 926 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21352.t1 | AT1G55750 | 54.649 | 527 | 221 | 6 | 7 | 521 | 5 | 525 | 0.0 | 540 |
MS.gene21352.t1 | AT1G55750 | 54.649 | 527 | 221 | 6 | 7 | 521 | 5 | 525 | 0.0 | 540 |
MS.gene21352.t1 | AT1G55750 | 54.442 | 529 | 223 | 6 | 7 | 523 | 5 | 527 | 0.0 | 538 |
MS.gene21352.t1 | AT1G55750 | 54.442 | 529 | 223 | 6 | 7 | 523 | 5 | 527 | 0.0 | 538 |
MS.gene21352.t1 | AT3G61420 | 54.580 | 524 | 220 | 5 | 10 | 521 | 3 | 520 | 0.0 | 531 |
MS.gene21352.t1 | AT3G61420 | 54.400 | 500 | 210 | 5 | 34 | 521 | 2 | 495 | 1.73e-174 | 506 |
MS.gene21352.t1 | AT1G55750 | 54.309 | 499 | 210 | 6 | 7 | 493 | 5 | 497 | 5.03e-173 | 501 |
MS.gene21352.t1 | AT1G55750 | 54.309 | 499 | 210 | 6 | 7 | 493 | 5 | 497 | 5.03e-173 | 501 |
Find 121 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGCTTACAGAATCAGAATTT+TGG | 0.131111 | 1.4:-71340424 | MS.gene21352:CDS |
TTTCACAGTGGATTTGTATT+TGG | 0.192656 | 1.4:+71342418 | None:intergenic |
ACATCAAAACTATGGGATTA+AGG | 0.198132 | 1.4:-71332128 | MS.gene21352:CDS |
CTGGGCCATCTTAGAAATTC+TGG | 0.226193 | 1.4:+71332484 | None:intergenic |
GGAGAAAATAAGATGCAATT+TGG | 0.242257 | 1.4:-71332193 | MS.gene21352:CDS |
AGGAATTACTGAGGCACTTT+TGG | 0.245951 | 1.4:-71331134 | MS.gene21352:CDS |
TTGTTTGATGTTGGATCATT+AGG | 0.268362 | 1.4:+71342258 | None:intergenic |
CATATCTAACATCAAAACTA+TGG | 0.272962 | 1.4:-71332136 | MS.gene21352:CDS |
TGACATCTATAATACCTTAC+TGG | 0.276591 | 1.4:+71335644 | None:intergenic |
TGTTCATCGGAAACAACTTT+TGG | 0.286087 | 1.4:+71340804 | None:intergenic |
ACAAGACTTTGAGTTGTTAC+TGG | 0.309829 | 1.4:+71331102 | None:intergenic |
AGCACTTCTACCGCTGTTCT+TGG | 0.312811 | 1.4:+71332631 | None:intergenic |
GTGCCTGAAGATCTTCAATC+TGG | 0.330729 | 1.4:+71332465 | None:intergenic |
CTGCTTAATCTAGGAAATAA+AGG | 0.331495 | 1.4:-71330524 | MS.gene21352:intron |
CTTCATCCTCAGTGTCATTT+CGG | 0.338872 | 1.4:+71340770 | None:intergenic |
CATGTTTGCCGGGAATTTGC+TGG | 0.340170 | 1.4:-71341456 | MS.gene21352:intron |
TACTCCTGGTGTAATCAAAT+TGG | 0.343161 | 1.4:-71342387 | MS.gene21352:intron |
AGATGAGCGAGGTAGATTTC+TGG | 0.343713 | 1.4:-71335524 | MS.gene21352:CDS |
CATCAAAACTATGGGATTAA+GGG | 0.349658 | 1.4:-71332127 | MS.gene21352:CDS |
CCAGAATTGGGTTTGCAGTC+AGG | 0.354088 | 1.4:-71331154 | MS.gene21352:intron |
TTTCAGATCTTCATGTTTGC+CGG | 0.354972 | 1.4:-71341467 | MS.gene21352:CDS |
TCAAGCACCAAATCAAATCT+TGG | 0.367340 | 1.4:-71331865 | MS.gene21352:CDS |
GGCCCAGATTGAAGATCTTC+AGG | 0.372758 | 1.4:-71332468 | MS.gene21352:CDS |
GACTCCAGAGATAAAATATC+AGG | 0.375525 | 1.4:-71337599 | MS.gene21352:intron |
ACACTGAGGATGAAGCTATT+AGG | 0.375683 | 1.4:-71340762 | MS.gene21352:CDS |
TTAACTTTCGGCTTTCATCT+TGG | 0.379039 | 1.4:+71340006 | None:intergenic |
GAGAAAATAAGATGCAATTT+GGG | 0.384188 | 1.4:-71332192 | MS.gene21352:CDS |
AGTTTCTCCTTAGTTGTGTT+GGG | 0.387979 | 1.4:+71331808 | None:intergenic |
TGGTTTGGTTGACCCCTCTT+TGG | 0.391372 | 1.4:+71341783 | None:intergenic |
AAGGTTTAGCCATGGTGGTT+TGG | 0.392565 | 1.4:+71341768 | None:intergenic |
CATAAATGTAGATATAGATA+TGG | 0.397262 | 1.4:-71332659 | MS.gene21352:intron |
TGAAGCTATTAGGAGAAGAT+AGG | 0.400825 | 1.4:-71340752 | MS.gene21352:intron |
TAGTTTCTCCTTAGTTGTGT+TGG | 0.413601 | 1.4:+71331807 | None:intergenic |
TAAATACCTGAGAATGTAGA+AGG | 0.415422 | 1.4:+71341749 | None:intergenic |
GGAAGCCTATGGCTCTTTGA+GGG | 0.424965 | 1.4:-71332163 | MS.gene21352:CDS |
AACTCAAAGTCTTGTTAGTA+AGG | 0.428754 | 1.4:-71331094 | MS.gene21352:CDS |
GAAACTTACCAGCAAATTCC+CGG | 0.433882 | 1.4:+71341448 | None:intergenic |
GTGGAGCTCACCTGCTGCAT+TGG | 0.444200 | 1.4:+71330454 | None:intergenic |
CAAGCACCAAATCAAATCTT+GGG | 0.448230 | 1.4:-71331864 | MS.gene21352:CDS |
CCTGGTGAACTGCTGGTTTG+AGG | 0.451507 | 1.4:+71335685 | None:intergenic |
GCTAAACCTTCTACATTCTC+AGG | 0.463319 | 1.4:-71341755 | MS.gene21352:intron |
CTATTTGGTGAAAAGGATCA+TGG | 0.463331 | 1.4:-71333632 | MS.gene21352:intron |
TAAATTGAAGAAGATTCATA+TGG | 0.463872 | 1.4:-71340465 | MS.gene21352:CDS |
CTGGTGAACTGCTGGTTTGA+GGG | 0.465958 | 1.4:+71335686 | None:intergenic |
CAAAGTGAGGTGGTTCTTGA+AGG | 0.467205 | 1.4:-71333527 | MS.gene21352:CDS |
AGGAAGCCTATGGCTCTTTG+AGG | 0.483212 | 1.4:-71332164 | MS.gene21352:CDS |
TCAAGCTTGTTGTTTGATGT+TGG | 0.487796 | 1.4:+71342249 | None:intergenic |
AGAAATGCCTGGTGAACTGC+TGG | 0.490401 | 1.4:+71335678 | None:intergenic |
TGCTATTGCAGCAGCTGCTG+AGG | 0.495654 | 1.4:-71335460 | MS.gene21352:CDS |
TTGTGTTGGGTAATATATCA+AGG | 0.498945 | 1.4:+71331821 | None:intergenic |
TACGATCAAATGAAATTATG+TGG | 0.499145 | 1.4:+71330435 | None:intergenic |
TTCAGATCTTCATGTTTGCC+GGG | 0.499741 | 1.4:-71341466 | MS.gene21352:CDS |
TCTGCTTCCATGTCTAAAGT+TGG | 0.501426 | 1.4:+71335256 | None:intergenic |
TTGATTACACCAGGAGTACC+AGG | 0.502105 | 1.4:+71342392 | None:intergenic |
CAGCGGTAGAAGTGCTTGCT+CGG | 0.503347 | 1.4:-71332624 | MS.gene21352:CDS |
GTGAAAGATCCTGGTACTCC+TGG | 0.503530 | 1.4:-71342401 | MS.gene21352:CDS |
TTGGGTTCTGAGGAAGCCTA+TGG | 0.511410 | 1.4:-71332174 | MS.gene21352:CDS |
GACATCTATAATACCTTACT+GGG | 0.513185 | 1.4:+71335645 | None:intergenic |
AAGCAATTTGAGGATGATGA+TGG | 0.513455 | 1.4:+71330399 | None:intergenic |
GCAACCTCATGACTCAATAG+AGG | 0.513815 | 1.4:+71332102 | None:intergenic |
TTGATACAGAGTGGTGCAAA+TGG | 0.514265 | 1.4:+71332431 | None:intergenic |
AGCTCACCTGCTGCATTGGA+TGG | 0.514909 | 1.4:+71330458 | None:intergenic |
CGAAAGTTAAAACAAAGGAT+TGG | 0.516018 | 1.4:-71339993 | MS.gene21352:CDS |
CCTCAAACCAGCAGTTCACC+AGG | 0.517127 | 1.4:-71335685 | MS.gene21352:CDS |
ACCTTGGATGATTCTCTAGC+CGG | 0.518857 | 1.4:-71332219 | MS.gene21352:CDS |
GGATGATTCTCTAGCCGGTA+AGG | 0.519239 | 1.4:-71332214 | MS.gene21352:CDS |
TATATTACCCAACACAACTA+AGG | 0.519676 | 1.4:-71331815 | MS.gene21352:CDS |
AAAGCCTACTAGTGATGGTC+GGG | 0.531348 | 1.4:-71339943 | MS.gene21352:intron |
ATTTGCACCACTCTGTATCA+AGG | 0.535116 | 1.4:-71332429 | MS.gene21352:intron |
ACTATGTAGAAAGCAATTTG+AGG | 0.535611 | 1.4:+71330389 | None:intergenic |
ATATCTAACATCAAAACTAT+GGG | 0.539136 | 1.4:-71332135 | MS.gene21352:CDS |
GATGGACAACAAGGGAAACC+TGG | 0.540268 | 1.4:+71330476 | None:intergenic |
AAATCCACTGTGAAAGATCC+TGG | 0.541867 | 1.4:-71342410 | MS.gene21352:CDS |
GGCAGTGCTAAGCTGTTCAT+CGG | 0.543627 | 1.4:+71340791 | None:intergenic |
AAGATGCAATTTGGGTTCTG+AGG | 0.543819 | 1.4:-71332184 | MS.gene21352:CDS |
TGTTGTCCATCCAATGCAGC+AGG | 0.545788 | 1.4:-71330464 | MS.gene21352:CDS |
ACCACTATACAGAATCTGAT+GGG | 0.547635 | 1.4:-71332526 | MS.gene21352:intron |
AAATCTTGGGAAAAGTTCAC+AGG | 0.549011 | 1.4:-71331851 | MS.gene21352:CDS |
AAGCTCAAAATACTCTGTAT+CGG | 0.550047 | 1.4:-71333577 | MS.gene21352:CDS |
TGCCTGAAGATCTTCAATCT+GGG | 0.556560 | 1.4:+71332466 | None:intergenic |
GAAGCCTATGGCTCTTTGAG+GGG | 0.558222 | 1.4:-71332162 | MS.gene21352:CDS |
AAGCCTATGGCTCTTTGAGG+GGG | 0.558298 | 1.4:-71332161 | MS.gene21352:CDS |
AAAGTCAGACCTACGGCACC+AGG | 0.558398 | 1.4:-71330494 | MS.gene21352:CDS |
AGAATCTGATGGGGTTGTAG+AGG | 0.563910 | 1.4:-71332516 | MS.gene21352:CDS |
GATGAGTGTAATCATCTCCT+TGG | 0.564451 | 1.4:+71335233 | None:intergenic |
CATACCCGACCATCACTAGT+AGG | 0.565408 | 1.4:+71339939 | None:intergenic |
AGAAAACGAAGCTCGAAAGA+AGG | 0.568139 | 1.4:-71335388 | MS.gene21352:intron |
TACCACTATACAGAATCTGA+TGG | 0.573551 | 1.4:-71332527 | MS.gene21352:intron |
GTGCTTGCTCGGAGAAAACA+TGG | 0.578234 | 1.4:-71332613 | MS.gene21352:intron |
TATTTGGTGAAAAGGATCAT+GGG | 0.582489 | 1.4:-71333631 | MS.gene21352:intron |
GCGAACCAGAATTTCTAAGA+TGG | 0.582581 | 1.4:-71332489 | MS.gene21352:CDS |
ATGTTTCCTTGCTACCATCA+CGG | 0.598108 | 1.4:+71333603 | None:intergenic |
GACACAAAGCCTACTAGTGA+TGG | 0.599822 | 1.4:-71339948 | MS.gene21352:CDS |
GCTGCATTGGATGGACAACA+AGG | 0.601535 | 1.4:+71330467 | None:intergenic |
GTACAAAATTGAGAAATGCC+TGG | 0.604538 | 1.4:+71335667 | None:intergenic |
TGTAGAAGGTTTAGCCATGG+TGG | 0.609234 | 1.4:+71341763 | None:intergenic |
CAAGGGAAACCTGGTGCCGT+AGG | 0.615369 | 1.4:+71330485 | None:intergenic |
CTGATGGGGTTGTAGAGGAG+AGG | 0.618513 | 1.4:-71332511 | MS.gene21352:CDS |
CAAAGCCTACTAGTGATGGT+CGG | 0.625574 | 1.4:-71339944 | MS.gene21352:CDS |
AATACCAATTTGATTACACC+AGG | 0.630251 | 1.4:+71342383 | None:intergenic |
TTCTACGGCGATGTCTTCGT+CGG | 0.637437 | 1.4:-71342462 | None:intergenic |
GGTCGATCCAACTTTAGACA+TGG | 0.638167 | 1.4:-71335263 | MS.gene21352:CDS |
AAAGCCGAAAGTTAAAACAA+AGG | 0.638776 | 1.4:-71339998 | MS.gene21352:CDS |
AGATCTCAACAGACAAAGTG+AGG | 0.645135 | 1.4:-71333540 | MS.gene21352:CDS |
GGATCCTCTATTGAGTCATG+AGG | 0.655843 | 1.4:-71332106 | MS.gene21352:CDS |
GAATGTAGAAGGTTTAGCCA+TGG | 0.665550 | 1.4:+71341760 | None:intergenic |
TATCTGCAAAGTCAGACCTA+CGG | 0.665912 | 1.4:-71330501 | MS.gene21352:CDS |
ACCGGCTAGAGAATCATCCA+AGG | 0.668297 | 1.4:+71332218 | None:intergenic |
CTTTAAATTCCAGATGAGCG+AGG | 0.670205 | 1.4:-71335535 | MS.gene21352:intron |
CTGCATTGGATGGACAACAA+GGG | 0.683490 | 1.4:+71330468 | None:intergenic |
CCACTATACAGAATCTGATG+GGG | 0.698617 | 1.4:-71332525 | MS.gene21352:intron |
TTAGACATGGAAGCAGACCA+AGG | 0.701290 | 1.4:-71335250 | MS.gene21352:CDS |
AGGGGTCAACCAAACCACCA+TGG | 0.710586 | 1.4:-71341777 | MS.gene21352:CDS |
TCTCAACAGACAAAGTGAGG+TGG | 0.714299 | 1.4:-71333537 | MS.gene21352:CDS |
AGTAGGACCTTGATACAGAG+TGG | 0.719964 | 1.4:+71332422 | None:intergenic |
TTTGCAGTCAGGAATTACTG+AGG | 0.720765 | 1.4:-71331143 | MS.gene21352:CDS |
TGAGAATCAAAATAGTCACG+AGG | 0.736285 | 1.4:+71332261 | None:intergenic |
TATGGAACATCCAAGAACAG+CGG | 0.741786 | 1.4:-71332641 | MS.gene21352:CDS |
AGTACCAGGATCTTTCACAG+TGG | 0.761380 | 1.4:+71342406 | None:intergenic |
AGTGATGAAATTGTGCAATG+CGG | 0.771592 | 1.4:-71330369 | MS.gene21352:CDS |
GCACTGCCGAAATGACACTG+AGG | 0.788791 | 1.4:-71340776 | MS.gene21352:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.4 | gene | 71330361 | 71342474 | 71330361 | ID=MS.gene21352 |
chr1.4 | mRNA | 71330361 | 71342474 | 71330361 | ID=MS.gene21352.t1;Parent=MS.gene21352 |
chr1.4 | exon | 71342388 | 71342474 | 71342388 | ID=MS.gene21352.t1.exon1;Parent=MS.gene21352.t1 |
chr1.4 | CDS | 71342388 | 71342474 | 71342388 | ID=cds.MS.gene21352.t1;Parent=MS.gene21352.t1 |
chr1.4 | exon | 71342226 | 71342304 | 71342226 | ID=MS.gene21352.t1.exon2;Parent=MS.gene21352.t1 |
chr1.4 | CDS | 71342226 | 71342304 | 71342226 | ID=cds.MS.gene21352.t1;Parent=MS.gene21352.t1 |
chr1.4 | exon | 71341756 | 71341817 | 71341756 | ID=MS.gene21352.t1.exon3;Parent=MS.gene21352.t1 |
chr1.4 | CDS | 71341756 | 71341817 | 71341756 | ID=cds.MS.gene21352.t1;Parent=MS.gene21352.t1 |
chr1.4 | exon | 71341457 | 71341517 | 71341457 | ID=MS.gene21352.t1.exon4;Parent=MS.gene21352.t1 |
chr1.4 | CDS | 71341457 | 71341517 | 71341457 | ID=cds.MS.gene21352.t1;Parent=MS.gene21352.t1 |
chr1.4 | exon | 71340753 | 71340855 | 71340753 | ID=MS.gene21352.t1.exon5;Parent=MS.gene21352.t1 |
chr1.4 | CDS | 71340753 | 71340855 | 71340753 | ID=cds.MS.gene21352.t1;Parent=MS.gene21352.t1 |
chr1.4 | exon | 71340412 | 71340487 | 71340412 | ID=MS.gene21352.t1.exon6;Parent=MS.gene21352.t1 |
chr1.4 | CDS | 71340412 | 71340487 | 71340412 | ID=cds.MS.gene21352.t1;Parent=MS.gene21352.t1 |
chr1.4 | exon | 71339944 | 71340039 | 71339944 | ID=MS.gene21352.t1.exon7;Parent=MS.gene21352.t1 |
chr1.4 | CDS | 71339944 | 71340039 | 71339944 | ID=cds.MS.gene21352.t1;Parent=MS.gene21352.t1 |
chr1.4 | exon | 71337600 | 71337644 | 71337600 | ID=MS.gene21352.t1.exon8;Parent=MS.gene21352.t1 |
chr1.4 | CDS | 71337600 | 71337644 | 71337600 | ID=cds.MS.gene21352.t1;Parent=MS.gene21352.t1 |
chr1.4 | exon | 71335659 | 71335715 | 71335659 | ID=MS.gene21352.t1.exon9;Parent=MS.gene21352.t1 |
chr1.4 | CDS | 71335659 | 71335715 | 71335659 | ID=cds.MS.gene21352.t1;Parent=MS.gene21352.t1 |
chr1.4 | exon | 71335389 | 71335544 | 71335389 | ID=MS.gene21352.t1.exon10;Parent=MS.gene21352.t1 |
chr1.4 | CDS | 71335389 | 71335544 | 71335389 | ID=cds.MS.gene21352.t1;Parent=MS.gene21352.t1 |
chr1.4 | exon | 71335228 | 71335293 | 71335228 | ID=MS.gene21352.t1.exon11;Parent=MS.gene21352.t1 |
chr1.4 | CDS | 71335228 | 71335293 | 71335228 | ID=cds.MS.gene21352.t1;Parent=MS.gene21352.t1 |
chr1.4 | exon | 71333516 | 71333639 | 71333516 | ID=MS.gene21352.t1.exon12;Parent=MS.gene21352.t1 |
chr1.4 | CDS | 71333516 | 71333639 | 71333516 | ID=cds.MS.gene21352.t1;Parent=MS.gene21352.t1 |
chr1.4 | exon | 71332614 | 71332670 | 71332614 | ID=MS.gene21352.t1.exon13;Parent=MS.gene21352.t1 |
chr1.4 | CDS | 71332614 | 71332670 | 71332614 | ID=cds.MS.gene21352.t1;Parent=MS.gene21352.t1 |
chr1.4 | exon | 71332430 | 71332536 | 71332430 | ID=MS.gene21352.t1.exon14;Parent=MS.gene21352.t1 |
chr1.4 | CDS | 71332430 | 71332536 | 71332430 | ID=cds.MS.gene21352.t1;Parent=MS.gene21352.t1 |
chr1.4 | exon | 71332095 | 71332286 | 71332095 | ID=MS.gene21352.t1.exon15;Parent=MS.gene21352.t1 |
chr1.4 | CDS | 71332095 | 71332286 | 71332095 | ID=cds.MS.gene21352.t1;Parent=MS.gene21352.t1 |
chr1.4 | exon | 71331801 | 71331914 | 71331801 | ID=MS.gene21352.t1.exon16;Parent=MS.gene21352.t1 |
chr1.4 | CDS | 71331801 | 71331914 | 71331801 | ID=cds.MS.gene21352.t1;Parent=MS.gene21352.t1 |
chr1.4 | exon | 71331073 | 71331172 | 71331073 | ID=MS.gene21352.t1.exon17;Parent=MS.gene21352.t1 |
chr1.4 | CDS | 71331073 | 71331172 | 71331073 | ID=cds.MS.gene21352.t1;Parent=MS.gene21352.t1 |
chr1.4 | exon | 71330361 | 71330533 | 71330361 | ID=MS.gene21352.t1.exon18;Parent=MS.gene21352.t1 |
chr1.4 | CDS | 71330361 | 71330533 | 71330361 | ID=cds.MS.gene21352.t1;Parent=MS.gene21352.t1 |
Gene Sequence |
Protein sequence |