AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene21397

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene21397.t1 MTR_1g090670 98.653 297 2 1 1 297 1 295 0.0 607
MS.gene21397.t1 MTR_1g090670 100.000 220 0 0 78 297 1 220 5.26e-165 457
MS.gene21397.t1 MTR_2g027800 70.000 320 66 6 1 297 1 313 1.27e-150 424
MS.gene21397.t1 MTR_2g027800 67.508 317 65 6 1 297 1 299 2.52e-140 398
MS.gene21397.t1 MTR_6g444980 52.841 176 70 4 25 196 14 180 8.42e-48 164
MS.gene21397.t1 MTR_6g444980 55.128 156 58 3 25 177 14 160 1.10e-44 155
MS.gene21397.t1 MTR_5g027440 53.642 151 62 4 39 183 18 166 3.83e-43 149
MS.gene21397.t1 MTR_5g041350 50.704 142 67 1 39 177 8 149 4.08e-39 140
MS.gene21397.t1 MTR_4g081710 48.718 156 71 4 39 188 10 162 5.70e-39 140
MS.gene21397.t1 MTR_7g088070 48.921 139 53 2 46 180 50 174 1.38e-38 137
MS.gene21397.t1 MTR_7g088070 48.252 143 52 2 46 180 50 178 1.49e-38 137
MS.gene21397.t1 MTR_2g086450 39.234 209 115 4 13 209 12 220 1.85e-38 139
MS.gene21397.t1 MTR_6g032990 41.341 179 97 3 39 209 35 213 9.71e-38 138
MS.gene21397.t1 MTR_2g027860 47.059 136 63 2 46 180 49 176 1.19e-32 123
MS.gene21397.t1 MTR_7g098250 33.466 251 139 8 30 269 246 479 5.34e-32 124
MS.gene21397.t1 MTR_1g080330 40.559 143 76 2 38 180 167 300 4.64e-28 112
MS.gene21397.t1 MTR_7g115530 38.889 144 79 1 46 189 218 352 1.31e-27 111
MS.gene21397.t1 MTR_1g053835 35.882 170 84 4 46 211 258 406 4.18e-26 107
MS.gene21397.t1 MTR_7g093030 36.646 161 81 4 46 200 212 357 8.92e-26 105
MS.gene21397.t1 MTR_1g080330 44.628 121 58 2 42 162 171 282 4.18e-25 102
MS.gene21397.t1 MTR_7g115530 42.735 117 58 1 46 162 218 325 5.41e-24 99.8
MS.gene21397.t1 MTR_7g115530 63.158 57 21 0 46 102 218 274 2.91e-20 89.0
MS.gene21397.t1 MTR_7g068600 35.366 164 80 4 46 196 13 163 3.96e-20 87.4
MS.gene21397.t1 MTR_7g115530 63.158 57 21 0 46 102 218 274 9.73e-20 88.2
MS.gene21397.t1 MTR_7g093030 61.404 57 22 0 46 102 212 268 1.52e-19 87.0
MS.gene21397.t1 MTR_7g115530 65.385 52 18 0 46 97 218 269 4.18e-18 82.8
MS.gene21397.t1 MTR_7g115530 64.706 51 18 0 46 96 218 268 2.61e-17 80.9
MS.gene21397.t1 MTR_2g023580 64.912 57 20 0 47 103 56 112 3.18e-17 79.3
MS.gene21397.t1 MTR_7g069660 60.714 56 22 0 47 102 72 127 7.95e-17 80.1
MS.gene21397.t1 MTR_1g053800 34.307 137 87 3 41 175 172 307 2.99e-16 78.2
MS.gene21397.t1 MTR_1g053830 54.545 55 25 0 48 102 20 74 3.08e-16 73.2
MS.gene21397.t1 MTR_6g071625 58.333 60 25 0 47 106 203 262 8.58e-16 77.0
MS.gene21397.t1 MTR_1g021520 45.745 94 44 1 20 106 93 186 1.09e-15 76.3
MS.gene21397.t1 MTR_2g084230 60.714 56 22 0 47 102 98 153 1.31e-15 76.3
MS.gene21397.t1 MTR_1g112370 46.988 83 29 2 47 114 23 105 1.55e-15 76.3
MS.gene21397.t1 MTR_2g084230 60.714 56 22 0 47 102 98 153 1.64e-15 76.3
MS.gene21397.t1 MTR_3g450310 61.111 54 21 0 46 99 19 72 1.70e-15 74.3
MS.gene21397.t1 MTR_8g086410 56.452 62 25 1 47 106 110 171 1.78e-15 76.6
MS.gene21397.t1 MTR_8g086410 56.452 62 25 1 47 106 112 173 1.81e-15 76.6
MS.gene21397.t1 MTR_3g064840 54.930 71 31 1 47 116 275 345 2.15e-15 76.6
MS.gene21397.t1 MTR_8g066310 62.500 56 21 0 47 102 174 229 2.68e-15 75.5
MS.gene21397.t1 MTR_0223s0040 62.264 53 20 0 47 99 19 71 4.49e-15 74.3
MS.gene21397.t1 MTR_5g029470 58.333 60 25 0 47 106 220 279 6.45e-15 74.7
MS.gene21397.t1 MTR_8g086410 50.746 67 31 1 47 111 112 178 5.02e-14 72.4
MS.gene21397.t1 MTR_2g016220 55.357 56 25 0 47 102 90 145 1.59e-13 70.5
MS.gene21397.t1 MTR_2g016220 55.357 56 25 0 47 102 90 145 1.64e-13 70.5
MS.gene21397.t1 MTR_5g017980 58.621 58 24 0 43 100 190 247 1.90e-13 70.1
MS.gene21397.t1 MTR_4g121020 61.818 55 20 1 46 100 111 164 1.91e-13 70.9
MS.gene21397.t1 MTR_4g121020 61.818 55 20 1 46 100 215 268 2.04e-13 70.9
MS.gene21397.t1 MTR_4g121020 61.818 55 20 1 46 100 215 268 2.06e-13 70.9
MS.gene21397.t1 MTR_7g093010 34.028 144 89 2 46 183 213 356 5.97e-13 68.9
MS.gene21397.t1 MTR_4g064730 60.000 55 21 1 46 100 131 184 1.08e-12 67.8
MS.gene21397.t1 MTR_1g032570 58.182 55 22 1 46 100 131 184 2.66e-12 67.4
MS.gene21397.t1 MTR_1g032570 58.182 55 22 1 46 100 200 253 2.97e-12 67.4
MS.gene21397.t1 MTR_1g093080 58.182 55 23 0 46 100 211 265 3.25e-12 66.6
MS.gene21397.t1 MTR_7g089010 60.000 55 21 1 46 100 91 144 3.57e-12 65.9
MS.gene21397.t1 MTR_5g017980 58.621 58 23 1 43 100 189 245 3.77e-12 66.2
MS.gene21397.t1 MTR_2g016220 48.438 64 32 1 47 110 90 152 3.99e-12 66.2
MS.gene21397.t1 MTR_5g017980 58.621 58 23 1 43 100 190 246 4.01e-12 66.2
MS.gene21397.t1 MTR_2g034960 54.237 59 26 1 42 100 207 264 6.09e-12 66.2
MS.gene21397.t1 MTR_1g013170 55.932 59 25 1 42 100 187 244 8.99e-12 65.9
MS.gene21397.t1 MTR_4g021790 52.542 59 27 1 42 100 164 221 1.26e-11 64.3
MS.gene21397.t1 MTR_4g113140 58.182 55 23 0 46 100 235 289 1.33e-11 65.1
MS.gene21397.t1 MTR_2g450070 49.153 59 29 1 42 100 209 266 2.63e-11 64.3
MS.gene21397.t1 MTR_3g106220 45.122 82 35 2 46 118 198 278 2.71e-11 64.3
MS.gene21397.t1 MTR_2g450070 49.153 59 29 1 42 100 209 266 2.82e-11 64.3
MS.gene21397.t1 MTR_4g086835 56.364 55 24 0 46 100 274 328 3.16e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene21397.t1 AT3G24120 49.138 232 92 5 35 242 30 259 8.34e-65 206
MS.gene21397.t1 AT4G13640 48.889 225 95 4 36 241 27 250 7.96e-64 203
MS.gene21397.t1 AT3G24120 48.511 235 92 6 35 242 30 262 1.34e-62 200
MS.gene21397.t1 AT4G13640 48.246 228 95 5 36 241 27 253 1.10e-61 197
MS.gene21397.t1 AT1G79430 55.696 158 57 4 35 188 23 171 2.96e-47 162
MS.gene21397.t1 AT3G12730 51.282 156 58 4 39 185 16 162 2.33e-40 140
MS.gene21397.t1 AT1G69580 47.337 169 68 4 35 188 23 185 2.84e-40 143
MS.gene21397.t1 AT1G69580 47.619 168 70 5 35 188 23 186 2.06e-39 141
MS.gene21397.t1 AT3G04030 40.084 237 106 8 33 243 32 258 2.31e-39 142
MS.gene21397.t1 AT5G18240 37.447 235 115 6 33 243 32 258 2.25e-37 137
MS.gene21397.t1 AT5G18240 37.447 235 115 6 33 243 32 258 2.25e-37 137
MS.gene21397.t1 AT3G04030 39.241 237 107 9 33 243 32 257 1.63e-36 134
MS.gene21397.t1 AT5G18240 37.447 235 113 7 33 243 32 256 1.63e-35 132
MS.gene21397.t1 AT5G45580 42.135 178 85 5 32 195 9 182 2.58e-35 129
MS.gene21397.t1 AT5G45580 43.976 166 83 4 40 195 1 166 3.40e-35 128
MS.gene21397.t1 AT3G04030 38.819 237 103 9 33 243 32 252 6.55e-35 130
MS.gene21397.t1 AT2G01060 47.407 135 63 1 46 180 15 141 1.26e-34 127
MS.gene21397.t1 AT5G18240 36.170 235 112 7 33 243 32 252 8.36e-33 125
MS.gene21397.t1 AT5G18240 36.170 235 112 7 33 243 32 252 8.36e-33 125
MS.gene21397.t1 AT5G06800 41.481 135 74 1 46 180 192 321 1.15e-28 113
MS.gene21397.t1 AT3G13040 41.279 172 73 5 30 181 210 373 1.71e-28 114
MS.gene21397.t1 AT3G13040 41.279 172 73 5 30 181 210 373 1.71e-28 114
MS.gene21397.t1 AT3G13040 41.279 172 73 5 30 181 210 373 1.71e-28 114
MS.gene21397.t1 AT3G04450 39.241 158 81 4 33 186 187 333 2.51e-27 110
MS.gene21397.t1 AT3G04450 39.241 158 81 4 33 186 187 333 2.51e-27 110
MS.gene21397.t1 AT3G04450 39.241 158 81 4 33 186 227 373 3.49e-27 110
MS.gene21397.t1 AT5G06800 40.000 140 64 2 46 180 192 316 3.46e-26 106
MS.gene21397.t1 AT5G29000 38.356 146 80 2 46 189 188 325 2.18e-25 104
MS.gene21397.t1 AT5G29000 38.356 146 80 2 46 189 188 325 2.18e-25 104
MS.gene21397.t1 AT4G28610 40.441 136 71 2 46 180 225 351 2.81e-25 104
MS.gene21397.t1 AT5G29000 38.356 146 80 2 46 189 231 368 3.27e-25 104
MS.gene21397.t1 AT2G20400 39.706 136 72 2 46 180 231 357 2.71e-24 101
MS.gene21397.t1 AT2G06020 62.121 66 25 0 37 102 77 142 3.30e-24 100
MS.gene21397.t1 AT2G20400 39.259 135 73 1 46 180 231 356 1.58e-23 99.8
MS.gene21397.t1 AT1G79430 47.826 115 47 4 78 188 1 106 1.50e-20 89.7
MS.gene21397.t1 AT3G04450 48.276 87 39 2 33 119 227 307 4.72e-19 85.9
MS.gene21397.t1 AT5G06800 61.404 57 22 0 46 102 192 248 4.76e-19 85.5
MS.gene21397.t1 AT5G29000 59.649 57 23 0 46 102 231 287 5.09e-18 83.2
MS.gene21397.t1 AT4G04605 62.264 53 20 0 47 99 15 67 1.49e-17 80.1
MS.gene21397.t1 AT2G42660 62.500 56 21 0 47 102 51 106 6.06e-17 79.0
MS.gene21397.t1 AT2G02060 61.017 59 23 0 45 103 28 86 7.36e-17 79.0
MS.gene21397.t1 AT2G02060 61.017 59 23 0 45 103 28 86 7.36e-17 79.0
MS.gene21397.t1 AT3G04030 35.417 192 88 8 78 243 1 182 8.76e-17 79.7
MS.gene21397.t1 AT1G14600 63.636 55 20 0 45 99 22 76 1.13e-16 78.2
MS.gene21397.t1 AT2G38300 62.500 56 21 0 47 102 55 110 3.07e-16 78.2
MS.gene21397.t1 AT1G32240 50.617 81 40 0 47 127 214 294 3.69e-16 78.2
MS.gene21397.t1 AT1G32240 50.617 81 40 0 47 127 214 294 4.92e-16 78.2
MS.gene21397.t1 AT2G40260 60.714 56 22 0 47 102 83 138 1.72e-15 76.6
MS.gene21397.t1 AT5G16560 54.286 70 30 1 47 116 220 287 1.98e-15 76.3
MS.gene21397.t1 AT5G42630 58.333 60 25 0 47 106 106 165 2.49e-15 73.9
MS.gene21397.t1 AT5G42630 58.333 60 25 0 47 106 106 165 6.06e-15 73.9
MS.gene21397.t1 AT2G01060 40.000 100 52 1 81 180 1 92 1.13e-14 72.4
MS.gene21397.t1 AT4G17695 50.000 74 33 1 47 116 165 238 1.69e-14 73.2
MS.gene21397.t1 AT3G12730 41.026 117 51 5 78 185 1 108 7.13e-14 68.9
MS.gene21397.t1 AT5G59570 60.000 55 21 1 46 100 141 194 4.77e-13 68.6
MS.gene21397.t1 AT5G59570 60.000 55 21 1 46 100 141 194 4.77e-13 68.6
MS.gene21397.t1 AT4G04580 47.143 70 34 2 36 103 3 71 5.47e-13 66.2
MS.gene21397.t1 AT3G46640 60.000 55 21 1 46 100 144 197 5.90e-13 68.6
MS.gene21397.t1 AT3G46640 60.000 55 21 1 46 100 144 197 5.90e-13 68.6
MS.gene21397.t1 AT3G46640 60.000 55 21 1 46 100 144 197 6.72e-13 68.6
MS.gene21397.t1 AT4G37180 58.491 53 22 0 48 100 212 264 9.13e-13 68.2
MS.gene21397.t1 AT4G37180 58.491 53 22 0 48 100 219 271 9.96e-13 68.2
MS.gene21397.t1 AT3G04030 33.854 192 85 9 78 243 1 176 1.03e-12 67.8
MS.gene21397.t1 AT1G49560 60.000 55 22 0 46 100 192 246 1.26e-12 67.8
MS.gene21397.t1 AT5G05090 60.000 55 21 1 46 100 81 134 2.02e-12 66.6
MS.gene21397.t1 AT3G10760 60.000 55 21 1 46 100 105 158 2.35e-12 67.0
MS.gene21397.t1 AT3G16857 58.182 55 22 1 46 100 167 220 2.62e-12 67.4
MS.gene21397.t1 AT3G16857 58.182 55 22 1 46 100 237 290 3.15e-12 67.4
MS.gene21397.t1 AT3G16857 58.182 55 22 1 46 100 237 290 3.20e-12 67.4
MS.gene21397.t1 AT2G40970 60.000 55 21 1 46 100 105 158 4.15e-12 65.5
MS.gene21397.t1 AT3G25790 60.000 50 20 0 51 100 201 250 5.82e-12 65.9
MS.gene21397.t1 AT5G58080 46.914 81 34 3 46 118 194 273 5.89e-12 66.6
MS.gene21397.t1 AT4G04555 48.387 62 32 0 42 103 10 71 1.04e-11 61.2
MS.gene21397.t1 AT1G13300 56.364 55 24 0 46 100 181 235 2.02e-11 64.3
MS.gene21397.t1 AT2G03500 56.897 58 25 0 43 100 230 287 2.32e-11 64.3
MS.gene21397.t1 AT5G18240 30.000 190 95 7 78 243 1 176 5.72e-11 62.8
MS.gene21397.t1 AT5G44190 55.556 54 23 1 46 99 147 199 6.07e-11 63.2
MS.gene21397.t1 AT5G44190 55.556 54 23 1 46 99 147 199 7.80e-11 62.4
MS.gene21397.t1 AT1G25550 55.172 58 26 0 43 100 206 263 8.45e-11 62.4

Find 72 sgRNAs with CRISPR-Local

Find 229 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAATGCCTCCTTGACTTCA+TGG 0.229322 1.4:-71778690 None:intergenic
TTTCAGTACCAGGGCTTTCT+AGG 0.257313 1.4:-71778524 None:intergenic
GTCCAACGAAGACGAGGTTT+TGG 0.346766 1.4:-71776415 None:intergenic
TCATTTAAAGAGTCATCTTC+AGG 0.349057 1.4:+71778137 MS.gene21397:CDS
ATGTTAGCTGATCAATTTAT+CGG 0.349878 1.4:+71779445 MS.gene21397:CDS
CCTTGAGGCTGGAGAATATA+TGG 0.350192 1.4:-71779556 None:intergenic
CTATTCCTTGAGGATTGACT+TGG 0.360516 1.4:-71779744 None:intergenic
GATCACCTAGTGGGACAAAA+AGG 0.371348 1.4:+71779644 MS.gene21397:CDS
ATGGTCCTCATGATCGCTTT+TGG 0.371640 1.4:-71778090 None:intergenic
CATCAGAAGCTGGTAACTTA+GGG 0.373882 1.4:-71778554 None:intergenic
CAACAACAACACTTCCTTCA+TGG 0.381627 1.4:-71776318 None:intergenic
AGGAAGTGTTGTTGTTGTTC+AGG 0.385482 1.4:+71776324 MS.gene21397:CDS
GCATCAGAAGCTGGTAACTT+AGG 0.386443 1.4:-71778555 None:intergenic
CTCAGAGGATTGACGCTAGA+AGG 0.389915 1.4:+71779622 MS.gene21397:CDS
TTTATGCATTGCAGAAGTAT+AGG 0.395607 1.4:+71778248 MS.gene21397:intron
CGTCAAACCCTTGACATTCA+TGG 0.400722 1.4:-71778109 None:intergenic
CCATGGTATCGCCTTTGATC+TGG 0.404208 1.4:+71779683 MS.gene21397:CDS
AGATGCAGAACGGAGATATA+TGG 0.414090 1.4:+71779399 MS.gene21397:CDS
AGTACTGAGCTAGGTGGAAA+TGG 0.415454 1.4:+71779514 MS.gene21397:CDS
GGAGGCATTAAGAGCACAAA+TGG 0.440107 1.4:+71778702 MS.gene21397:CDS
AGCAGTTAGCCCCTTGAGGC+TGG 0.448240 1.4:-71779567 None:intergenic
TACTCGTTTGCATCAGAAGC+TGG 0.451451 1.4:-71778564 None:intergenic
AATAGCAAGGTATGGAATGT+AGG 0.459706 1.4:+71779762 MS.gene21397:CDS
TATATCTCCGTTCTGCATCT+TGG 0.482620 1.4:-71779396 None:intergenic
TATAGGCTCGGCAAGCAAGC+TGG 0.487525 1.4:+71778265 MS.gene21397:CDS
TTTGACGAGGGATGCAAAGA+TGG 0.489601 1.4:+71778295 MS.gene21397:CDS
CATATATTCTCCAGCCTCAA+GGG 0.510954 1.4:+71779557 MS.gene21397:CDS
TTTCCACCTAGCTCAGTACT+TGG 0.511466 1.4:-71779511 None:intergenic
TGAGACTCTCAAGTGATGTT+AGG 0.512011 1.4:-71779603 None:intergenic
CCATATATTCTCCAGCCTCA+AGG 0.515434 1.4:+71779556 MS.gene21397:CDS
CCTCAAGGAATAGCAAGGTA+TGG 0.523268 1.4:+71779754 MS.gene21397:CDS
ATCCAAAACCTCGTCTTCGT+TGG 0.525904 1.4:+71776413 MS.gene21397:CDS
CCTTCATGGTCATGACTATG+AGG 0.529329 1.4:-71776304 None:intergenic
CCATACCTTGCTATTCCTTG+AGG 0.535847 1.4:-71779754 None:intergenic
GTTGATGCCGTCACTCAACT+TGG 0.538069 1.4:+71776460 MS.gene21397:CDS
TGATGTTAGGCAACTTTCTG+TGG 0.540828 1.4:-71779590 None:intergenic
GATGTTGGGCTTGGACTCCA+TGG 0.555467 1.4:+71779666 MS.gene21397:CDS
GTGGAGCAGTTAGCCCCTTG+AGG 0.556661 1.4:-71779571 None:intergenic
GCTCGGCAAGCAAGCTGGAA+AGG 0.561523 1.4:+71778270 MS.gene21397:CDS
GAAACTAACATGAGAACTCA+AGG 0.562013 1.4:+71779709 MS.gene21397:CDS
TATTCCTTGAGGATTGACTT+GGG 0.573824 1.4:-71779743 None:intergenic
CGCTAGAAGGATCACCTAGT+GGG 0.576729 1.4:+71779635 MS.gene21397:CDS
GAACTACCAAGTACTGAGCT+AGG 0.576911 1.4:+71779505 MS.gene21397:CDS
TTAGTTTCACTCCAGATCAA+AGG 0.586045 1.4:-71779694 None:intergenic
TCGTATCTCCTAGAAAGCCC+TGG 0.590615 1.4:+71778516 MS.gene21397:CDS
CATGAGGACCATGAATGTCA+AGG 0.591196 1.4:+71778101 MS.gene21397:CDS
CTTACATGCTCTTTCAAGCA+TGG 0.593170 1.4:-71779422 None:intergenic
ATATAGGGGCCATGAAGTCA+AGG 0.600134 1.4:+71778681 MS.gene21397:intron
CAAGCTGCATTTACTAGTGG+AGG 0.602001 1.4:+71778735 MS.gene21397:CDS
AAGCAAGCTGCATTTACTAG+TGG 0.606226 1.4:+71778732 MS.gene21397:CDS
GACAAGGGTCAGCAGCAGCA+AGG 0.608391 1.4:-71776375 None:intergenic
ATGAGGACCATGAATGTCAA+GGG 0.610152 1.4:+71778102 MS.gene21397:CDS
CATCAACAAAGCGTTGGTGA+AGG 0.616368 1.4:-71776444 None:intergenic
TGACGGCATCAACAAAGCGT+TGG 0.618232 1.4:-71776450 None:intergenic
CCACACCAAAAGCGATCATG+AGG 0.624758 1.4:+71778085 MS.gene21397:CDS
TCAATCCTCAAGGAATAGCA+AGG 0.627368 1.4:+71779749 MS.gene21397:CDS
GATGCCGTCACTCAACTTGG+TGG 0.631084 1.4:+71776463 MS.gene21397:CDS
CCTCATAGTCATGACCATGA+AGG 0.638338 1.4:+71776304 MS.gene21397:CDS
TTAGCCCAAGTCAATCCTCA+AGG 0.640967 1.4:+71779739 MS.gene21397:CDS
CCAGATCAAAGGCGATACCA+TGG 0.642100 1.4:-71779683 None:intergenic
GCATTGCAGAAGTATAGGCT+CGG 0.642536 1.4:+71778253 MS.gene21397:intron
ATATATTCTCCAGCCTCAAG+GGG 0.645538 1.4:+71779558 MS.gene21397:CDS
ATCAGAAGCTGGTAACTTAG+GGG 0.660581 1.4:-71778553 None:intergenic
TCAGAAGTGAGAACAAGACA+AGG 0.660603 1.4:-71776391 None:intergenic
AGGACCACCAAGTTGAGTGA+CGG 0.665127 1.4:-71776467 None:intergenic
TCAGTAGTCCAACGAAGACG+AGG 0.666354 1.4:-71776421 None:intergenic
AAATTCGCCAAGATGCAGAA+CGG 0.668751 1.4:+71779389 MS.gene21397:CDS
ACATCACTTGAGAGTCTCAG+AGG 0.669427 1.4:+71779607 MS.gene21397:CDS
ACGCTAGAAGGATCACCTAG+TGG 0.682794 1.4:+71779634 MS.gene21397:CDS
CAGAAGTGAGAACAAGACAA+GGG 0.729677 1.4:-71776390 None:intergenic
TAGGGGCCATGAAGTCAAGG+AGG 0.733476 1.4:+71778684 MS.gene21397:intron
CTACCAAGTACTGAGCTAGG+TGG 0.737567 1.4:+71779508 MS.gene21397:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTCACAAAAAAAAAAAATA+TGG - chr1.4:71777200-71777219 None:intergenic 10.0%
!! ATTTATCAATTTGAATTATA+TGG + chr1.4:71778321-71778340 MS.gene21397:intron 10.0%
!! TGATTAATTATGAAATATTA+TGG + chr1.4:71779094-71779113 MS.gene21397:intron 10.0%
!! TTCACAAAAAAAAAAAATAT+GGG - chr1.4:71777199-71777218 None:intergenic 10.0%
!!! TAACTAATTGATTTTTTTTT+TGG + chr1.4:71778488-71778507 MS.gene21397:intron 10.0%
!! AAATTAACAAATTAACCAAA+TGG - chr1.4:71776562-71776581 None:intergenic 15.0%
!! AATATAACATTATAGAGTTA+GGG + chr1.4:71778870-71778889 MS.gene21397:intron 15.0%
!! AATTAACAAATTAACCAAAT+GGG - chr1.4:71776561-71776580 None:intergenic 15.0%
!! TATTATTATGCGAATAATAT+AGG + chr1.4:71777955-71777974 MS.gene21397:intron 15.0%
!! TCACAAAAAAAAAAAATATG+GGG - chr1.4:71777198-71777217 None:intergenic 15.0%
!!! AATTGATTTTTTTTTTGGAA+GGG + chr1.4:71778493-71778512 MS.gene21397:intron 15.0%
!!! ATATCATTGATTTACATTAT+CGG + chr1.4:71777770-71777789 MS.gene21397:intron 15.0%
!!! CAAAATCATTCAAATTTTAT+TGG + chr1.4:71777492-71777511 MS.gene21397:intron 15.0%
!!! GAAAATGAAATTTTTTTACT+AGG - chr1.4:71777328-71777347 None:intergenic 15.0%
!!! TAATTGATTTTTTTTTTGGA+AGG + chr1.4:71778492-71778511 MS.gene21397:intron 15.0%
!! ATTAACAAATTAACCAAATG+GGG - chr1.4:71776560-71776579 None:intergenic 20.0%
!! CAAATAAATCTATCTAAGAA+AGG - chr1.4:71777134-71777153 None:intergenic 20.0%
!! CAATATAACATTATAGAGTT+AGG + chr1.4:71778869-71778888 MS.gene21397:intron 20.0%
!! GAAGTTAAGAATTATTATGT+TGG + chr1.4:71779284-71779303 MS.gene21397:intron 20.0%
!! TATCAATGTCAAACTAAAAA+TGG - chr1.4:71776592-71776611 None:intergenic 20.0%
!! TTGACTCAAAATATGATTAA+GGG + chr1.4:71777559-71777578 MS.gene21397:intron 20.0%
!!! ACTAAATTTTGTTACTTTTG+TGG + chr1.4:71776524-71776543 MS.gene21397:intron 20.0%
!!! ATTGACTCAAAATATGATTA+AGG + chr1.4:71777558-71777577 MS.gene21397:intron 20.0%
!!! TATCATTGATTTACATTATC+GGG + chr1.4:71777771-71777790 MS.gene21397:intron 20.0%
!!! TATGATTTGTGAATATTTCT+AGG + chr1.4:71777911-71777930 MS.gene21397:intron 20.0%
!!! TCATTGTTTTTATTTCATCT+TGG + chr1.4:71776764-71776783 MS.gene21397:intron 20.0%
!!! TTAGGTGAAACTTTATATTT+TGG - chr1.4:71777422-71777441 None:intergenic 20.0%
!!! TTTTTGTTTTTGAAGAGTTT+TGG + chr1.4:71776623-71776642 MS.gene21397:intron 20.0%
! ACCTAAAATACAAAATCTCA+AGG + chr1.4:71777436-71777455 MS.gene21397:intron 25.0%
! AGTGACATTAGAATTTGAAA+AGG - chr1.4:71777467-71777486 None:intergenic 25.0%
! ATAATCCAAAGTCCAAATTA+GGG + chr1.4:71777594-71777613 MS.gene21397:intron 25.0%
! ATGTAACCAATCTATTGAAA+AGG - chr1.4:71778403-71778422 None:intergenic 25.0%
! ATGTTAGCTGATCAATTTAT+CGG + chr1.4:71779445-71779464 MS.gene21397:CDS 25.0%
! CAAATACATAATTATTCGCA+TGG - chr1.4:71777067-71777086 None:intergenic 25.0%
! GATAGATTTATTTGTACTTC+TGG + chr1.4:71777140-71777159 MS.gene21397:intron 25.0%
! GATATTCAGAAAAATTCTGA+AGG - chr1.4:71777755-71777774 None:intergenic 25.0%
! GTAGAAGTTAAGAATTATTG+TGG + chr1.4:71779342-71779361 MS.gene21397:intron 25.0%
! GTTATATAGATTCTGTAGTA+TGG + chr1.4:71778955-71778974 MS.gene21397:intron 25.0%
! TAGTTGAAATTATTGAAGCT+AGG + chr1.4:71776657-71776676 MS.gene21397:intron 25.0%
! TCCAAATTAGGGTTTATAAA+CGG + chr1.4:71777605-71777624 MS.gene21397:intron 25.0%
! TTGTGATTCTGACAAATTTA+TGG + chr1.4:71776839-71776858 MS.gene21397:intron 25.0%
!! AATATTTTGCTTACTATCCA+TGG + chr1.4:71777094-71777113 MS.gene21397:intron 25.0%
!! ACCTTGAGATTTTGTATTTT+AGG - chr1.4:71777440-71777459 None:intergenic 25.0%
!! ATTCTTTTTACTGTAGTTTG+TGG + chr1.4:71779221-71779240 MS.gene21397:intron 25.0%
!! ATTTGAGATACCAATCAAAA+TGG - chr1.4:71778820-71778839 None:intergenic 25.0%
!! TAAGAATTTCATTGTTTCTC+TGG + chr1.4:71778585-71778604 MS.gene21397:intron 25.0%
!! TAGAATCCTTTTCAATAGAT+TGG + chr1.4:71778394-71778413 MS.gene21397:intron 25.0%
!! TTATTTTCTCACTTTGTAGT+GGG + chr1.4:71777874-71777893 MS.gene21397:intron 25.0%
!!! AACTTTATATTTTGGTTGGT+TGG - chr1.4:71777414-71777433 None:intergenic 25.0%
!!! ACATTGTCTTTTATTTGTGA+TGG + chr1.4:71777838-71777857 MS.gene21397:intron 25.0%
!!! AGAATTATTATGTTGGTAAC+TGG + chr1.4:71779291-71779310 MS.gene21397:intron 25.0%
!!! ATCATTGATTTACATTATCG+GGG + chr1.4:71777772-71777791 MS.gene21397:intron 25.0%
!!! GTGAAACTTTATATTTTGGT+TGG - chr1.4:71777418-71777437 None:intergenic 25.0%
!!! TGTTTGTAATTTTAACCTGT+TGG + chr1.4:71778442-71778461 MS.gene21397:intron 25.0%
!!! TTATTGTAGACCATTTTGAT+TGG + chr1.4:71778807-71778826 MS.gene21397:intron 25.0%
!!! TTCGATCATTTTTTGACAAT+AGG - chr1.4:71778901-71778920 None:intergenic 25.0%
!!! TTGGTAGTTCTTGAAATTTT+TGG - chr1.4:71779495-71779514 None:intergenic 25.0%
!!! TTTATTTTCTCACTTTGTAG+TGG + chr1.4:71777873-71777892 MS.gene21397:intron 25.0%
!!! TTTTTGAAGAGTTTTGGTTT+TGG + chr1.4:71776629-71776648 MS.gene21397:intron 25.0%
AAATGATCGAATCTCAACTT+AGG + chr1.4:71778910-71778929 MS.gene21397:intron 30.0%
AACCTGTTGGATATTATCTA+TGG + chr1.4:71778455-71778474 MS.gene21397:intron 30.0%
AACTCTTCAAATGCATCTAT+TGG + chr1.4:71778019-71778038 MS.gene21397:intron 30.0%
AAGAATTATTGTGGTATTGC+AGG + chr1.4:71779351-71779370 MS.gene21397:intron 30.0%
AAGTGTCAATTCAGACATAA+AGG - chr1.4:71778627-71778646 None:intergenic 30.0%
ACCGTTTATAAACCCTAATT+TGG - chr1.4:71777609-71777628 None:intergenic 30.0%
ACTAGTAAGTACAACATCTA+GGG + chr1.4:71776923-71776942 MS.gene21397:intron 30.0%
ACTTTGGATTATGACTGATT+TGG - chr1.4:71777586-71777605 None:intergenic 30.0%
AGTGTCAATTCAGACATAAA+GGG - chr1.4:71778626-71778645 None:intergenic 30.0%
ATAAACCCTAATTTGGACTT+TGG - chr1.4:71777602-71777621 None:intergenic 30.0%
CAATGTCATGTCATATATAG+GGG + chr1.4:71778667-71778686 MS.gene21397:intron 30.0%
CATAATCCAAAGTCCAAATT+AGG + chr1.4:71777593-71777612 MS.gene21397:intron 30.0%
CATTTGAAGAGTTTATCAGA+TGG - chr1.4:71778012-71778031 None:intergenic 30.0%
CCTCTCTAACTCTATTTATT+GGG + chr1.4:71777978-71777997 MS.gene21397:intron 30.0%
CTCTCTAACTCTATTTATTG+GGG + chr1.4:71777979-71777998 MS.gene21397:intron 30.0%
GAAATTATTGAAGCTAGGAA+AGG + chr1.4:71776662-71776681 MS.gene21397:intron 30.0%
GCAATGTCATGTCATATATA+GGG + chr1.4:71778666-71778685 MS.gene21397:intron 30.0%
GTTTAACACAATTAGAACGT+GGG + chr1.4:71776945-71776964 MS.gene21397:intron 30.0%
TCATTTAAAGAGTCATCTTC+AGG + chr1.4:71778137-71778156 MS.gene21397:CDS 30.0%
TGCAATGTCATGTCATATAT+AGG + chr1.4:71778665-71778684 MS.gene21397:intron 30.0%
TGGTATTGTAAGTAGATTGT+GGG + chr1.4:71779177-71779196 MS.gene21397:intron 30.0%
TTGACATTGATAGAGAAGAA+TGG + chr1.4:71776600-71776619 MS.gene21397:intron 30.0%
TTGGTATTGTAAGTAGATTG+TGG + chr1.4:71779176-71779195 MS.gene21397:intron 30.0%
! ATGTTTTATCCCACTAAGTA+GGG - chr1.4:71777269-71777288 None:intergenic 30.0%
! ATTTGTTGCAAATTGCTGTT+TGG + chr1.4:71776721-71776740 MS.gene21397:intron 30.0%
! TTTATGCATTGCAGAAGTAT+AGG + chr1.4:71778248-71778267 MS.gene21397:intron 30.0%
!! ATTACTAAAAGCATTCTCCT+CGG - chr1.4:71777678-71777697 None:intergenic 30.0%
!! TTGTCTTTTATTTGTGATGG+TGG + chr1.4:71777841-71777860 MS.gene21397:intron 30.0%
!! TTTGTTGCAAATTGCTGTTT+GGG + chr1.4:71776722-71776741 MS.gene21397:intron 30.0%
!!! TTGGTTTTTAGTGGAAAAAG+TGG - chr1.4:71777395-71777414 None:intergenic 30.0%
AGCCATAGATAATATCCAAC+AGG - chr1.4:71778460-71778479 None:intergenic 35.0%
CACTAGTAAGTACAACATCT+AGG + chr1.4:71776922-71776941 MS.gene21397:intron 35.0%
CCATGCTAAGAAAATACCAA+AGG - chr1.4:71777635-71777654 None:intergenic 35.0%
CCCAATAAATAGAGTTAGAG+AGG - chr1.4:71777981-71778000 None:intergenic 35.0%
CTAGATGTTGTACTTACTAG+TGG - chr1.4:71776924-71776943 None:intergenic 35.0%
GAAACTAACATGAGAACTCA+AGG + chr1.4:71779709-71779728 MS.gene21397:CDS 35.0%
GAAATGAGTTAGTTACTGGT+AGG - chr1.4:71776490-71776509 None:intergenic 35.0%
GAGAGAAATGAGTTAGTTAC+TGG - chr1.4:71776494-71776513 None:intergenic 35.0%
GCCTCTCTAACTCTATTTAT+TGG + chr1.4:71777977-71777996 MS.gene21397:intron 35.0%
GGTTTAACACAATTAGAACG+TGG + chr1.4:71776944-71776963 MS.gene21397:intron 35.0%
GTGAATTTGTAAAAGCTACG+AGG - chr1.4:71776811-71776830 None:intergenic 35.0%
GTTTATAAACGGTACTCCTT+TGG + chr1.4:71777616-71777635 MS.gene21397:intron 35.0%
TAACTCTTCACAGTTTCACT+TGG - chr1.4:71779050-71779069 None:intergenic 35.0%
TATGGAAAGTAGATCAGAGA+AGG + chr1.4:71778973-71778992 MS.gene21397:intron 35.0%
TCTTGGATTTGTCAGAATCA+TGG + chr1.4:71776781-71776800 MS.gene21397:intron 35.0%
TGACATTGCAATTCTCAGTT+TGG - chr1.4:71778655-71778674 None:intergenic 35.0%
TGTGAAGAGTTAGAGGTTAA+TGG + chr1.4:71779058-71779077 MS.gene21397:intron 35.0%
TTAGTTTCACTCCAGATCAA+AGG - chr1.4:71779697-71779716 None:intergenic 35.0%
TTGAAGAGTTTATCAGATGG+AGG - chr1.4:71778009-71778028 None:intergenic 35.0%
! AGCTGTTCGATCAATTTTAG+AGG - chr1.4:71777522-71777541 None:intergenic 35.0%
! ATTTTCTTAGCATGGTACCA+TGG + chr1.4:71777640-71777659 MS.gene21397:intron 35.0%
! CATGTTTTATCCCACTAAGT+AGG - chr1.4:71777270-71777289 None:intergenic 35.0%
! CCTTTGGTATTTTCTTAGCA+TGG + chr1.4:71777632-71777651 MS.gene21397:intron 35.0%
! CTTTTGCCTTTTTCTGTCTT+TGG - chr1.4:71779011-71779030 None:intergenic 35.0%
! TATTCCTTGAGGATTGACTT+GGG - chr1.4:71779746-71779765 None:intergenic 35.0%
! TGGTAGCTAATGAGTGATTT+TGG + chr1.4:71777171-71777190 MS.gene21397:intron 35.0%
! TGTTGTTTGATCTGTGTATC+CGG + chr1.4:71779117-71779136 MS.gene21397:intron 35.0%
! TTTTTCTGTCTTTGGCGATT+GGG - chr1.4:71779003-71779022 None:intergenic 35.0%
!!! TTTGGTTGGTTGGTTTTTAG+TGG - chr1.4:71777404-71777423 None:intergenic 35.0%
AAATTCGCCAAGATGCAGAA+CGG + chr1.4:71779389-71779408 MS.gene21397:CDS 40.0%
AAGCAAGCTGCATTTACTAG+TGG + chr1.4:71778732-71778751 MS.gene21397:CDS 40.0%
AGATGCAGAACGGAGATATA+TGG + chr1.4:71779399-71779418 MS.gene21397:CDS 40.0%
AGTGGGACAAAAAGGATGTT+GGG + chr1.4:71779652-71779671 MS.gene21397:CDS 40.0%
ATATATTCTCCAGCCTCAAG+GGG + chr1.4:71779558-71779577 MS.gene21397:CDS 40.0%
ATCAGAAGCTGGTAACTTAG+GGG - chr1.4:71778556-71778575 None:intergenic 40.0%
ATGAGGACCATGAATGTCAA+GGG + chr1.4:71778102-71778121 MS.gene21397:CDS 40.0%
CAACAACAACACTTCCTTCA+TGG - chr1.4:71776321-71776340 None:intergenic 40.0%
CAATCGCCAAAGACAGAAAA+AGG + chr1.4:71779002-71779021 MS.gene21397:intron 40.0%
CAGAAGTGAGAACAAGACAA+GGG - chr1.4:71776393-71776412 None:intergenic 40.0%
CATATATTCTCCAGCCTCAA+GGG + chr1.4:71779557-71779576 MS.gene21397:CDS 40.0%
CATCAGAAGCTGGTAACTTA+GGG - chr1.4:71778557-71778576 None:intergenic 40.0%
CCAAGCATTATCCACTTGAT+CGG - chr1.4:71779143-71779162 None:intergenic 40.0%
CTATTCCTTGAGGATTGACT+TGG - chr1.4:71779747-71779766 None:intergenic 40.0%
CTTACATGCTCTTTCAAGCA+TGG - chr1.4:71779425-71779444 None:intergenic 40.0%
GAATCTCAACTTAGGTGGTT+TGG + chr1.4:71778918-71778937 MS.gene21397:intron 40.0%
GACCTTGTTAAGTGCATCTT+TGG - chr1.4:71776870-71776889 None:intergenic 40.0%
GCTTACTATCCATGGACATA+TGG + chr1.4:71777102-71777121 MS.gene21397:intron 40.0%
GTGAAACTGTGAAGAGTTAG+AGG + chr1.4:71779051-71779070 MS.gene21397:intron 40.0%
GTTCAACCAAGAAAGCTATG+AGG - chr1.4:71777804-71777823 None:intergenic 40.0%
TAACACAATTAGAACGTGGG+AGG + chr1.4:71776948-71776967 MS.gene21397:intron 40.0%
TAGTGGGACAAAAAGGATGT+TGG + chr1.4:71779651-71779670 MS.gene21397:CDS 40.0%
TATATCTCCGTTCTGCATCT+TGG - chr1.4:71779399-71779418 None:intergenic 40.0%
TCAATCCTCAAGGAATAGCA+AGG + chr1.4:71779749-71779768 MS.gene21397:CDS 40.0%
TCAGAAGTGAGAACAAGACA+AGG - chr1.4:71776394-71776413 None:intergenic 40.0%
TGAGACTCTCAAGTGATGTT+AGG - chr1.4:71779606-71779625 None:intergenic 40.0%
TGATCGAATCTCAACTTAGG+TGG + chr1.4:71778913-71778932 MS.gene21397:intron 40.0%
TGATGTTAGGCAACTTTCTG+TGG - chr1.4:71779593-71779612 None:intergenic 40.0%
TGCCAAAGATGCACTTAACA+AGG + chr1.4:71776865-71776884 MS.gene21397:intron 40.0%
TTAATGCCTCCTTGACTTCA+TGG - chr1.4:71778693-71778712 None:intergenic 40.0%
TTCAGTCCTCATAGCTTTCT+TGG + chr1.4:71777795-71777814 MS.gene21397:intron 40.0%
TTGTACTTCTGGTCTCTCTA+TGG + chr1.4:71777151-71777170 MS.gene21397:intron 40.0%
TTTATCCCACTAAGTAGGGT+CGG - chr1.4:71777265-71777284 None:intergenic 40.0%
! AACATCCTTTTTGTCCCACT+AGG - chr1.4:71779652-71779671 None:intergenic 40.0%
! CTTTTTCTGTCTTTGGCGAT+TGG - chr1.4:71779004-71779023 None:intergenic 40.0%
!! AGGAAGTGTTGTTGTTGTTC+AGG + chr1.4:71776324-71776343 MS.gene21397:CDS 40.0%
!!! GCTTGGCTGTTTTTGTTGAT+TGG + chr1.4:71779157-71779176 MS.gene21397:intron 40.0%
ACATCACTTGAGAGTCTCAG+AGG + chr1.4:71779607-71779626 MS.gene21397:CDS 45.0%
AGGACAGTACCATATGTCCA+TGG - chr1.4:71777114-71777133 None:intergenic 45.0%
ATATAGGGGCCATGAAGTCA+AGG + chr1.4:71778681-71778700 MS.gene21397:intron 45.0%
ATCCAAAACCTCGTCTTCGT+TGG + chr1.4:71776413-71776432 MS.gene21397:CDS 45.0%
ATTAAGTCCCATGTGGGAGA+AGG + chr1.4:71777713-71777732 MS.gene21397:intron 45.0%
ATTAGAACGTGGGAGGTTTG+AGG + chr1.4:71776955-71776974 MS.gene21397:intron 45.0%
CAAGCTGCATTTACTAGTGG+AGG + chr1.4:71778735-71778754 MS.gene21397:CDS 45.0%
CATGAGGACCATGAATGTCA+AGG + chr1.4:71778101-71778120 MS.gene21397:CDS 45.0%
CATGGGACTTAATGAGGTCA+AGG - chr1.4:71777706-71777725 None:intergenic 45.0%
CCATATATTCTCCAGCCTCA+AGG + chr1.4:71779556-71779575 MS.gene21397:CDS 45.0%
CCGATCAAGTGGATAATGCT+TGG + chr1.4:71779140-71779159 MS.gene21397:intron 45.0%
CCTCAAGGAATAGCAAGGTA+TGG + chr1.4:71779754-71779773 MS.gene21397:CDS 45.0%
CCTCATAGTCATGACCATGA+AGG + chr1.4:71776304-71776323 MS.gene21397:CDS 45.0%
CCTTCATGGTCATGACTATG+AGG - chr1.4:71776307-71776326 None:intergenic 45.0%
CCTTGAGGCTGGAGAATATA+TGG - chr1.4:71779559-71779578 None:intergenic 45.0%
CGTCAAACCCTTGACATTCA+TGG - chr1.4:71778112-71778131 None:intergenic 45.0%
GACAAAAAGGATGTTGGGCT+TGG + chr1.4:71779657-71779676 MS.gene21397:CDS 45.0%
GACCTCATTAAGTCCCATGT+GGG + chr1.4:71777707-71777726 MS.gene21397:intron 45.0%
GATCACCTAGTGGGACAAAA+AGG + chr1.4:71779644-71779663 MS.gene21397:CDS 45.0%
GCATCAGAAGCTGGTAACTT+AGG - chr1.4:71778558-71778577 None:intergenic 45.0%
GCTCATAAACATGTCTCGTC+TGG - chr1.4:71778844-71778863 None:intergenic 45.0%
TACTCGTTTGCATCAGAAGC+TGG - chr1.4:71778567-71778586 None:intergenic 45.0%
TATAGCCGACCCTACTTAGT+GGG + chr1.4:71777257-71777276 MS.gene21397:intron 45.0%
TGACCTCATTAAGTCCCATG+TGG + chr1.4:71777706-71777725 MS.gene21397:intron 45.0%
TTAAGTCCCATGTGGGAGAA+GGG + chr1.4:71777714-71777733 MS.gene21397:intron 45.0%
TTAGCCCAAGTCAATCCTCA+AGG + chr1.4:71779739-71779758 MS.gene21397:CDS 45.0%
TTTCAGTACCAGGGCTTTCT+AGG - chr1.4:71778527-71778546 None:intergenic 45.0%
TTTCCACCTAGCTCAGTACT+TGG - chr1.4:71779514-71779533 None:intergenic 45.0%
TTTGACGAGGGATGCAAAGA+TGG + chr1.4:71778295-71778314 MS.gene21397:CDS 45.0%
! AGTACTGAGCTAGGTGGAAA+TGG + chr1.4:71779514-71779533 MS.gene21397:CDS 45.0%
! ATGGTCCTCATGATCGCTTT+TGG - chr1.4:71778093-71778112 None:intergenic 45.0%
! GCATTGCAGAAGTATAGGCT+CGG + chr1.4:71778253-71778272 MS.gene21397:intron 45.0%
! GGGATGAGTTTTCAGTACCA+GGG - chr1.4:71778536-71778555 None:intergenic 45.0%
! TTAGGTGGTTTGGACATGTG+TGG + chr1.4:71778928-71778947 MS.gene21397:intron 45.0%
!! AGCTGGAAAGGATTTTGACG+AGG + chr1.4:71778282-71778301 MS.gene21397:CDS 45.0%
!! CATCAACAAAGCGTTGGTGA+AGG - chr1.4:71776447-71776466 None:intergenic 45.0%
!! CCATACCTTGCTATTCCTTG+AGG - chr1.4:71779757-71779776 None:intergenic 45.0%
!! GAACTACCAAGTACTGAGCT+AGG + chr1.4:71779505-71779524 MS.gene21397:CDS 45.0%
!! GCTGGAAAGGATTTTGACGA+GGG + chr1.4:71778283-71778302 MS.gene21397:CDS 45.0%
!! GGAGGCATTAAGAGCACAAA+TGG + chr1.4:71778702-71778721 MS.gene21397:CDS 45.0%
!!! TGGTTTTGATGCACCCCATT+TGG + chr1.4:71776544-71776563 MS.gene21397:intron 45.0%
ACGCTAGAAGGATCACCTAG+TGG + chr1.4:71779634-71779653 MS.gene21397:CDS 50.0%
CCACACCAAAAGCGATCATG+AGG + chr1.4:71778085-71778104 MS.gene21397:CDS 50.0%
CCAGATCAAAGGCGATACCA+TGG - chr1.4:71779686-71779705 None:intergenic 50.0%
CCATGGTATCGCCTTTGATC+TGG + chr1.4:71779683-71779702 MS.gene21397:CDS 50.0%
CGCTAGAAGGATCACCTAGT+GGG + chr1.4:71779635-71779654 MS.gene21397:CDS 50.0%
CTATAGCCGACCCTACTTAG+TGG + chr1.4:71777256-71777275 MS.gene21397:intron 50.0%
CTCAGAGGATTGACGCTAGA+AGG + chr1.4:71779622-71779641 MS.gene21397:CDS 50.0%
CTCCCACATGGGACTTAATG+AGG - chr1.4:71777712-71777731 None:intergenic 50.0%
GCATTATCCACTTGATCGGC+CGG - chr1.4:71779139-71779158 None:intergenic 50.0%
GTTGATGCCGTCACTCAACT+TGG + chr1.4:71776460-71776479 MS.gene21397:CDS 50.0%
TAAGTCCCATGTGGGAGAAG+GGG + chr1.4:71777715-71777734 MS.gene21397:intron 50.0%
TCAGTAGTCCAACGAAGACG+AGG - chr1.4:71776424-71776443 None:intergenic 50.0%
TCGTATCTCCTAGAAAGCCC+TGG + chr1.4:71778516-71778535 MS.gene21397:CDS 50.0%
TGACGGCATCAACAAAGCGT+TGG - chr1.4:71776453-71776472 None:intergenic 50.0%
! AGGACCACCAAGTTGAGTGA+CGG - chr1.4:71776470-71776489 None:intergenic 50.0%
! GGGGATGAGTTTTCAGTACC+AGG - chr1.4:71778537-71778556 None:intergenic 50.0%
! GTCCAACGAAGACGAGGTTT+TGG - chr1.4:71776418-71776437 None:intergenic 50.0%
!! CCTCATGATCGCTTTTGGTG+TGG - chr1.4:71778088-71778107 None:intergenic 50.0%
!! CTACCAAGTACTGAGCTAGG+TGG + chr1.4:71779508-71779527 MS.gene21397:CDS 50.0%
CATGGTCTACGATTGAGCCG+AGG + chr1.4:71777658-71777677 MS.gene21397:intron 55.0%
CTCGGCTCAATCGTAGACCA+TGG - chr1.4:71777660-71777679 None:intergenic 55.0%
GAAGACCCCTTCTCCCACAT+GGG - chr1.4:71777723-71777742 None:intergenic 55.0%
GATGCCGTCACTCAACTTGG+TGG + chr1.4:71776463-71776482 MS.gene21397:CDS 55.0%
GATGTTGGGCTTGGACTCCA+TGG + chr1.4:71779666-71779685 MS.gene21397:CDS 55.0%
TAGGGGCCATGAAGTCAAGG+AGG + chr1.4:71778684-71778703 MS.gene21397:intron 55.0%
TATAGGCTCGGCAAGCAAGC+TGG + chr1.4:71778265-71778284 MS.gene21397:CDS 55.0%
TGAAGACCCCTTCTCCCACA+TGG - chr1.4:71777724-71777743 None:intergenic 55.0%
TGTGTATCCGGCCGATCAAG+TGG + chr1.4:71779129-71779148 MS.gene21397:intron 55.0%
! GGTGGTTTGGACATGTGTGG+AGG + chr1.4:71778931-71778950 MS.gene21397:intron 55.0%
AGCAGTTAGCCCCTTGAGGC+TGG - chr1.4:71779570-71779589 None:intergenic 60.0%
GACAAGGGTCAGCAGCAGCA+AGG - chr1.4:71776378-71776397 None:intergenic 60.0%
GCTCGGCAAGCAAGCTGGAA+AGG + chr1.4:71778270-71778289 MS.gene21397:CDS 60.0%
GTGGAGCAGTTAGCCCCTTG+AGG - chr1.4:71779574-71779593 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 71776283 71779783 71776283 ID=MS.gene21397
chr1.4 mRNA 71776283 71779783 71776283 ID=MS.gene21397.t1;Parent=MS.gene21397
chr1.4 exon 71776283 71776493 71776283 ID=MS.gene21397.t1.exon1;Parent=MS.gene21397.t1
chr1.4 CDS 71776283 71776493 71776283 ID=cds.MS.gene21397.t1;Parent=MS.gene21397.t1
chr1.4 exon 71778082 71778158 71778082 ID=MS.gene21397.t1.exon2;Parent=MS.gene21397.t1
chr1.4 CDS 71778082 71778158 71778082 ID=cds.MS.gene21397.t1;Parent=MS.gene21397.t1
chr1.4 exon 71778262 71778316 71778262 ID=MS.gene21397.t1.exon3;Parent=MS.gene21397.t1
chr1.4 CDS 71778262 71778316 71778262 ID=cds.MS.gene21397.t1;Parent=MS.gene21397.t1
chr1.4 exon 71778514 71778583 71778514 ID=MS.gene21397.t1.exon4;Parent=MS.gene21397.t1
chr1.4 CDS 71778514 71778583 71778514 ID=cds.MS.gene21397.t1;Parent=MS.gene21397.t1
chr1.4 exon 71778687 71778756 71778687 ID=MS.gene21397.t1.exon5;Parent=MS.gene21397.t1
chr1.4 CDS 71778687 71778756 71778687 ID=cds.MS.gene21397.t1;Parent=MS.gene21397.t1
chr1.4 exon 71779373 71779783 71779373 ID=MS.gene21397.t1.exon6;Parent=MS.gene21397.t1
chr1.4 CDS 71779373 71779783 71779373 ID=cds.MS.gene21397.t1;Parent=MS.gene21397.t1
Gene Sequence

>MS.gene21397

ATGTTTTCTAGGTTGATACGTCCTCATAGTCATGACCATGAAGGAAGTGTTGTTGTTGTTCAGGAAGATACAAATCATCATCTTCACACTCACCTTGCTGCTGCTGACCCTTGTCTTGTTCTCACTTCTGATCCAAAACCTCGTCTTCGTTGGACTACTGACCTTCACCAACGCTTTGTTGATGCCGTCACTCAACTTGGTGGTCCTACCAGTAACTAACTCATTTCTCTCTCTTTTTCTTACTAAATTTTGTTACTTTTGTGGTTTTGATGCACCCCATTTGGTTAATTTGTTAATTTATTTTTGCCATTTTTAGTTTGACATTGATAGAGAAGAATGGTTTTTGTTTTTGAAGAGTTTTGGTTTTGGTTTAATAGTTGAAATTATTGAAGCTAGGAAAGGAATGAACTTTATAGTTTTTTTTTTGAATTGTGTGAAATTTGTTGCAAATTGCTGTTTGGGTTTGATTTTCATTAATTTGTCATTGTTTTTATTTCATCTTGGATTTGTCAGAATCATGGTGAGCCTCGTAGCTTTTACAAATTCACGTTGCTCATTGTGATTCTGACAAATTTATGGTGATGCCAAAGATGCACTTAACAAGGTCTTAAGTTCATGCATTGTGAATGCTGTATAAACCACTAGTAAGTACAACATCTAGGGTTTAACACAATTAGAACGTGGGAGGTTTGAGGTGTTAAACTTGTATGATGTGAAACTCTTCTGCTTGTCTTCAATTTCATGTTTGTACAATGCTTTGCATCATTCTTGTACTTTGTCACCATGCGAATAATTATGTATTTGTCATTGTAATATTTTGCTTACTATCCATGGACATATGGTACTGTCCTTTCTTAGATAGATTTATTTGTACTTCTGGTCTCTCTATGGTAGCTAATGAGTGATTTTGGTCCCCATATTTTTTTTTTTTGTGAATTATCTCTCAATTTTTATTTCTTACAATTTAGTCTCTCTATAGCCGACCCTACTTAGTGGGATAAAACATGATTGTTGTTGTTGTTGTTAGTATCTCTATAACTTTCCTAGTAAAAAAATTTCATTTTCAACTCAAAATATTCTCAAATTTAACTGATCAAATTATATTTTTACCACTTTTTCCACTAAAAACCAACCAACCAAAATATAAAGTTTCACCTAAAATACAAAATCTCAAGGTTTAGCCTTTTCAAATTCTAATGTCACTTCATACAAAATCATTCAAATTTTATTGGTTTTCCTCTAAAATTGATCGAACAGCTTTGCGAGACAGACTTTATTGACTCAAAATATGATTAAGGGACCAAATCAGTCATAATCCAAAGTCCAAATTAGGGTTTATAAACGGTACTCCTTTGGTATTTTCTTAGCATGGTACCATGGTCTACGATTGAGCCGAGGAGAATGCTTTTAGTAATTGACACCTTGACCTCATTAAGTCCCATGTGGGAGAAGGGGTCTTCATTTGTATGCCTTCAGAATTTTTCTGAATATCATTGATTTACATTATCGGGGTTCAGTCCTCATAGCTTTCTTGGTTGAACTTCTTTTTGTTTTAACATTGTCTTTTATTTGTGATGGTGGTTTTACGCTTTTATTTTCTCACTTTGTAGTGGGAGTATGTTATGAATTATGATTTGTGAATATTTCTAGGAATTCTTATAAAAACAACTAATATTATTATGCGAATAATATAGGCCTCTCTAACTCTATTTATTGGGGCATTCCTCCATCTGATAAACTCTTCAAATGCATCTATTGGTCTTCTCACATTTATTATAATCTGAAAATATCATTTGCAGAAGCCACACCAAAAGCGATCATGAGGACCATGAATGTCAAGGGTTTGACGCTCTATCATTTAAAGAGTCATCTTCAGGTTCATTTGTGTATCATTGTTGCAACACAGTTATAATATTTAGTGCAGTAGAAACTTCATGATGCTTTCTTTTTTCATTTACACTATTTTTTATGCATTGCAGAAGTATAGGCTCGGCAAGCAAGCTGGAAAGGATTTTGACGAGGGATGCAAAGATGGTACATTTATCAATTTGAATTATATGGCACTTATTTGACATTATTAATATGATTTTTGTTTAATTATGTATCACTATTAGAATCCTTTTCAATAGATTGGTTACATTACATCTTTAGTGTTTCTATGTTTGTAATTTTAACCTGTTGGATATTATCTATGGCTCTACGCTTTAACTAATTGATTTTTTTTTTGGAAGGGTCGTATCTCCTAGAAAGCCCTGGTACTGAAAACTCATCCCCTAAGTTACCAGCTTCTGATGCAAACGAGTAAGAATTTCATTGTTTCTCTGGAAACAATTTACTTCTCCCTTTATGTCTGAATTGACACTTGATGACCAAACTGAGAATTGCAATGTCATGTCATATATAGGGGCCATGAAGTCAAGGAGGCATTAAGAGCACAAATGGAAGTGCAAAGCAAGCTGCATTTACTAGTGGAGGTAAATTTCTTTTTCATTGTGTACAGTGTATTATTTTGTTTTGTTTATATTTATTGTAGACCATTTTGATTGGTATCTCAAATTCCAGACGAGACATGTTTATGAGCAATAGCAATATAACATTATAGAGTTAGGGTAGCACCTATTGTCAAAAAATGATCGAATCTCAACTTAGGTGGTTTGGACATGTGTGGAGGAGTTATATAGATTCTGTAGTATGGAAAGTAGATCAGAGAAGGACAGCCCAATCGCCAAAGACAGAAAAAGGCAAAAGAAAAAAAAGACTATAACCAAGTGAAACTGTGAAGAGTTAGAGGTTAATGGCATGCAGTAGACATGATTAATTATGAAATATTATGGTGTTGTTTGATCTGTGTATCCGGCCGATCAAGTGGATAATGCTTGGCTGTTTTTGTTGATTGGTATTGTAAGTAGATTGTGGGCTGATTGTACATCAATGAGTGATTCTTTTTACTGTAGTTTGTGGCTTAGACGTCATCAACTTTAACAACTGAGAATGACTAATTGAAGTTAAGAATTATTATGTTGGTAACTGGCAGCGATTGAATTTTCTTATTATGTCTTGTAGAAGTTAAGAATTATTGTGGTATTGCAGGCAGAGAAGCACTTGCAAATTCGCCAAGATGCAGAACGGAGATATATGGCCATGCTTGAAAGAGCATGTAAGATGTTAGCTGATCAATTTATCGGTGATACAACTATAGACACAGACATCCAAAAATTTCAAGAACTACCAAGTACTGAGCTAGGTGGAAATGGAATGCATATTTCAGAAGTACCATATATTCTCCAGCCTCAAGGGGCTAACTGCTCCACAGAAAGTTGCCTAACATCACTTGAGAGTCTCAGAGGATTGACGCTAGAAGGATCACCTAGTGGGACAAAAAGGATGTTGGGCTTGGACTCCATGGTATCGCCTTTGATCTGGAGTGAAACTAACATGAGAACTCAAGGCATTCACTTAGCCCAAGTCAATCCTCAAGGAATAGCAAGGTATGGAATGTAG
Protein sequence

>MS.gene21397.t1

MFSRLIRPHSHDHEGSVVVVQEDTNHHLHTHLAAADPCLVLTSDPKPRLRWTTDLHQRFVDAVTQLGGPTKATPKAIMRTMNVKGLTLYHLKSHLQKYRLGKQAGKDFDEGCKDGSYLLESPGTENSSPKLPASDANEGHEVKEALRAQMEVQSKLHLLVEAEKHLQIRQDAERRYMAMLERACKMLADQFIGDTTIDTDIQKFQELPSTELGGNGMHISEVPYILQPQGANCSTESCLTSLESLRGLTLEGSPSGTKRMLGLDSMVSPLIWSETNMRTQGIHLAQVNPQGIARYGM