AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene21442

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene21442.t1 MTR_5g014890 97.059 272 5 3 1 271 1 270 0.0 528
MS.gene21442.t1 MTR_4g097600 64.360 289 67 9 1 271 1 271 3.95e-98 288
MS.gene21442.t1 MTR_2g061030 70.548 146 40 2 94 237 169 313 2.14e-64 205
MS.gene21442.t1 MTR_1g054285 72.388 134 36 1 104 237 135 267 2.34e-63 201
MS.gene21442.t1 MTR_1g017090 57.868 197 73 6 73 266 83 272 3.32e-63 200
MS.gene21442.t1 MTR_5g013010 59.067 193 66 5 47 237 69 250 1.41e-62 199
MS.gene21442.t1 MTR_7g093430 70.455 132 39 0 106 237 142 273 1.54e-62 199
MS.gene21442.t1 MTR_4g100550 64.242 165 48 5 74 237 80 234 4.68e-61 194
MS.gene21442.t1 MTR_8g006705 61.765 170 55 3 74 235 91 258 6.87e-60 192
MS.gene21442.t1 MTR_3g103590 57.222 180 67 4 93 266 117 292 1.77e-50 168
MS.gene21442.t1 MTR_4g084750 58.955 134 49 1 123 250 64 197 8.04e-48 158
MS.gene21442.t1 MTR_2g038625 52.349 149 67 2 91 238 52 197 1.19e-40 140
MS.gene21442.t1 MTR_2g038580 52.349 149 67 2 91 238 52 197 1.19e-40 140
MS.gene21442.t1 MTR_4g126900 64.655 116 33 3 126 235 90 203 1.20e-37 132
MS.gene21442.t1 MTR_5g013010 53.846 130 48 4 47 175 69 187 9.52e-28 106
MS.gene21442.t1 MTR_5g039000 38.411 151 79 2 73 215 24 168 9.58e-20 86.7
MS.gene21442.t1 MTR_7g010020 45.833 96 52 0 115 210 71 166 1.32e-18 83.6
MS.gene21442.t1 MTR_8g468210 42.500 120 62 1 96 215 56 168 1.45e-18 83.6
MS.gene21442.t1 MTR_6g011610 45.794 107 51 1 111 210 83 189 1.96e-18 83.2
MS.gene21442.t1 MTR_6g007647 50.000 88 44 0 124 211 33 120 2.60e-18 82.4
MS.gene21442.t1 MTR_6g007647 48.913 92 47 0 124 215 67 158 3.97e-18 82.4
MS.gene21442.t1 MTR_6g011610 45.794 107 51 1 111 210 64 170 4.70e-18 81.6
MS.gene21442.t1 MTR_5g038280 40.559 143 72 4 78 211 43 181 1.12e-17 81.6
MS.gene21442.t1 MTR_7g103340 40.187 107 63 1 105 210 43 149 2.15e-16 76.6
MS.gene21442.t1 MTR_8g469430 46.809 94 43 1 124 210 89 182 2.53e-16 77.4
MS.gene21442.t1 MTR_1g061660 43.478 92 52 0 121 212 56 147 3.12e-16 76.3
MS.gene21442.t1 MTR_3g080100 47.368 95 43 1 124 211 20 114 3.90e-16 75.5
MS.gene21442.t1 MTR_3g080100 47.368 95 43 1 124 211 59 153 5.38e-16 75.9
MS.gene21442.t1 MTR_4g107650 45.833 96 52 0 116 211 87 182 6.73e-16 76.6
MS.gene21442.t1 MTR_3g086790 42.718 103 52 1 116 211 52 154 1.55e-15 75.5
MS.gene21442.t1 MTR_8g089895 46.392 97 45 1 122 211 52 148 2.06e-15 75.1
MS.gene21442.t1 MTR_8g026960 35.878 131 72 3 128 251 38 163 1.15e-12 66.2
MS.gene21442.t1 MTR_3g092150 43.617 94 52 1 127 220 41 133 6.68e-12 64.3
MS.gene21442.t1 MTR_5g019680 44.000 100 51 1 119 218 48 142 2.69e-11 62.0
MS.gene21442.t1 MTR_5g019650 44.086 93 52 0 119 211 48 140 4.23e-11 61.6
MS.gene21442.t1 MTR_5g029320 32.500 120 81 0 101 220 69 188 5.83e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene21442.t1 AT4G37790 60.690 290 83 9 1 271 1 278 5.62e-93 276
MS.gene21442.t1 AT2G22800 57.093 289 91 8 1 271 1 274 1.10e-83 252
MS.gene21442.t1 AT5G06710 68.707 147 42 2 96 240 162 306 2.43e-65 207
MS.gene21442.t1 AT3G60390 59.091 176 58 3 74 235 99 274 8.19e-60 192
MS.gene21442.t1 AT4G16780 66.901 142 45 2 96 236 102 242 1.41e-59 191
MS.gene21442.t1 AT2G44910 54.822 197 76 4 49 236 84 276 2.69e-57 186
MS.gene21442.t1 AT5G47370 51.659 211 73 8 74 271 72 266 8.42e-56 181
MS.gene21442.t1 AT4G17460 55.747 174 66 5 74 237 77 249 3.08e-52 172
MS.gene21442.t1 AT2G01430 55.556 126 54 1 115 240 130 253 7.14e-41 142
MS.gene21442.t1 AT1G70920 51.852 135 54 2 116 246 27 154 2.22e-36 127
MS.gene21442.t1 AT1G70920 53.846 130 49 2 116 241 57 179 2.47e-36 129
MS.gene21442.t1 AT5G06710 70.732 82 20 2 96 175 162 241 4.29e-29 111
MS.gene21442.t1 AT2G01430 57.692 78 31 1 115 192 130 205 1.50e-21 90.1
MS.gene21442.t1 AT1G26960 41.593 113 66 0 116 228 63 175 1.86e-18 82.8
MS.gene21442.t1 AT1G69780 45.833 96 52 0 116 211 77 172 5.95e-18 82.0
MS.gene21442.t1 AT5G15150 42.500 120 62 2 98 213 92 208 9.71e-18 81.6
MS.gene21442.t1 AT3G01220 40.984 122 64 2 96 213 63 180 4.77e-17 79.3
MS.gene21442.t1 AT3G01470 47.312 93 42 1 124 209 68 160 8.58e-17 78.6
MS.gene21442.t1 AT5G65310 43.000 100 50 1 119 211 67 166 2.59e-15 74.7
MS.gene21442.t1 AT5G65310 43.000 100 50 1 119 211 49 148 2.87e-15 74.3
MS.gene21442.t1 AT4G40060 43.299 97 51 1 122 214 57 153 3.85e-15 74.3
MS.gene21442.t1 AT2G22430 44.792 96 49 1 122 213 60 155 2.13e-14 72.4
MS.gene21442.t1 AT5G03790 32.653 147 96 2 124 267 77 223 4.13e-14 70.5
MS.gene21442.t1 AT1G27045 46.875 96 44 1 124 212 68 163 4.88e-14 70.5
MS.gene21442.t1 AT1G27045 50.000 88 44 0 124 211 68 155 5.58e-14 69.7
MS.gene21442.t1 AT2G46680 42.424 99 53 1 121 215 29 127 7.41e-14 70.1
MS.gene21442.t1 AT2G46680 40.625 96 57 0 121 216 29 124 7.90e-14 70.1
MS.gene21442.t1 AT1G27045 57.576 66 28 0 124 189 25 90 9.34e-14 68.6
MS.gene21442.t1 AT1G27045 57.576 66 28 0 124 189 25 90 9.34e-14 68.6
MS.gene21442.t1 AT1G27045 57.576 66 28 0 124 189 17 82 1.19e-13 67.8
MS.gene21442.t1 AT2G18550 44.000 100 55 1 112 210 48 147 3.73e-13 67.4
MS.gene21442.t1 AT2G36610 42.857 98 48 2 123 212 70 167 4.64e-13 66.6
MS.gene21442.t1 AT5G03790 37.931 116 64 2 124 231 77 192 1.23e-11 62.8
MS.gene21442.t1 AT4G36740 43.678 87 49 0 124 210 55 141 1.23e-11 63.2
MS.gene21442.t1 AT4G36740 43.678 87 49 0 124 210 56 142 1.25e-11 63.2
MS.gene21442.t1 AT3G61890 42.353 85 49 0 127 211 33 117 2.68e-11 62.4

Find 65 sgRNAs with CRISPR-Local

Find 93 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGTACCTGGCTCTCCGATTC+TGG 0.186509 5.1:+7662382 None:intergenic
GATTCTCTTCACCTTGTTCT+AGG 0.242496 5.1:-7662982 MS.gene21442:CDS
AAACATTAACAGACGAAAAT+AGG 0.283618 5.1:-7661569 MS.gene21442:CDS
GGATTGTAGAAATGAGTATT+TGG 0.305343 5.1:+7661381 None:intergenic
AAGCAATAGTGATTGTTCTT+TGG 0.306534 5.1:+7662618 None:intergenic
TGGCTCGTTGGAGGTGGAAT+AGG 0.345900 5.1:+7662897 None:intergenic
CGAAAATAGGAGGCTCAAAA+AGG 0.353329 5.1:-7661556 MS.gene21442:CDS
TAGCGAGACAGTTGAATCTA+AGG 0.358273 5.1:-7662428 MS.gene21442:CDS
GTGGTGGTAGTTATTTCCTT+TGG 0.358754 5.1:+7662934 None:intergenic
ATAGGGATTCATGGTGGTGG+TGG 0.418056 5.1:+7662915 None:intergenic
AAGTTCCTCACCATAACCTT+TGG 0.418493 5.1:+7662816 None:intergenic
GGGATTCATGGTGGTGGTGG+TGG 0.429866 5.1:+7662918 None:intergenic
AAACAAGCTCCCAAAGGTTA+TGG 0.433046 5.1:-7662826 MS.gene21442:CDS
AAGAAGAAGTAGAAGAAGAG+AGG 0.435022 5.1:-7662705 MS.gene21442:CDS
GGCTCGTTGGAGGTGGAATA+GGG 0.435231 5.1:+7662898 None:intergenic
GGCCGCGACAAGTTGAAGTA+TGG 0.440361 5.1:-7662407 MS.gene21442:CDS
GTTAATTCATCTTTCTCAAG+TGG 0.450640 5.1:-7662763 MS.gene21442:CDS
TCCTTAACGTTAGGACTCTC+TGG 0.452116 5.1:-7662874 MS.gene21442:CDS
ACCAGAGAGTCCTAACGTTA+AGG 0.454957 5.1:+7662873 None:intergenic
TTGAAGTATGGTTCCAGAAT+CGG 0.456231 5.1:-7662395 MS.gene21442:CDS
CGCGTCGCCGACGGTGGTGG+TGG 0.459139 5.1:-7661435 MS.gene21442:CDS
AGTTCCTCACCATAACCTTT+GGG 0.463230 5.1:+7662817 None:intergenic
CGCAAGAAGGGCAGATGGAG+AGG 0.463288 5.1:+7661469 None:intergenic
GGCCGCGTCGCCGACGGTGG+TGG 0.477523 5.1:-7661438 MS.gene21442:CDS
GGTTCCAGAATCGGAGAGCC+AGG 0.479376 5.1:-7662386 MS.gene21442:intron
CAAATGCTAGAAAGAAACTA+AGG 0.489611 5.1:-7662645 MS.gene21442:CDS
TAAGGATGGCTCGTTGGAGG+TGG 0.501094 5.1:+7662891 None:intergenic
GGAGGTGGAATAGGGATTCA+TGG 0.513429 5.1:+7662906 None:intergenic
CGTTAAGGATGGCTCGTTGG+AGG 0.516004 5.1:+7662888 None:intergenic
AGAAGAAGTAGAAGAAGAGA+GGG 0.516839 5.1:-7662704 MS.gene21442:CDS
CGGCCGAGTCTTTCGCAAGA+AGG 0.519322 5.1:+7661456 None:intergenic
CACCACCACCGTCGGCGACG+CGG 0.531823 5.1:+7661436 None:intergenic
AACGAGCCATCCTTAACGTT+AGG 0.533980 5.1:-7662883 MS.gene21442:CDS
GGCCGAGTCTTTCGCAAGAA+GGG 0.542654 5.1:+7661457 None:intergenic
GAGAGTGCTGCAAGTGAAGA+GGG 0.544213 5.1:-7662740 MS.gene21442:CDS
GAGAGGGTAGCTGCAGGCAT+AGG 0.545391 5.1:+7661486 None:intergenic
CAGATGGAGAGGGTAGCTGC+AGG 0.545980 5.1:+7661480 None:intergenic
TTAATTCATCTTTCTCAAGT+GGG 0.546761 5.1:-7662762 MS.gene21442:CDS
TTTGTTTAACATGCTGCGGA+AGG 0.548799 5.1:+7661348 None:intergenic
AGACTCGGCCGCGTCGCCGA+CGG 0.550522 5.1:-7661444 MS.gene21442:CDS
GATGAATTAACAACACTATG+AGG 0.550657 5.1:+7662775 None:intergenic
CTCGGCCGCGTCGCCGACGG+TGG 0.550736 5.1:-7661441 MS.gene21442:CDS
GAATACTTCTACTACTCCAA+AGG 0.557339 5.1:-7662950 MS.gene21442:CDS
GGAGAGTGCTGCAAGTGAAG+AGG 0.575107 5.1:-7662741 MS.gene21442:CDS
GAGCTTGTTTGTGATTTGTA+CGG 0.578033 5.1:+7662839 None:intergenic
GGAATAGGGATTCATGGTGG+TGG 0.578972 5.1:+7662912 None:intergenic
GAAATGAGTATTTGGAGCCA+TGG 0.579663 5.1:+7661389 None:intergenic
GCAAGAAGGGCAGATGGAGA+GGG 0.582206 5.1:+7661470 None:intergenic
ATTAGAACCACCACCACCGT+CGG 0.589643 5.1:+7661428 None:intergenic
TCTTTCGCAAGAAGGGCAGA+TGG 0.591761 5.1:+7661464 None:intergenic
GCTGCGGAAGGATTGTTGAA+AGG 0.595707 5.1:+7661360 None:intergenic
TGCCCTTCTTGCGAAAGACT+CGG 0.599355 5.1:-7661459 MS.gene21442:CDS
AGTATTTGGAGCCATGGTGA+AGG 0.599655 5.1:+7661395 None:intergenic
AACCATACTTCAACTTGTCG+CGG 0.615090 5.1:+7662405 None:intergenic
GAGAGTCCTAACGTTAAGGA+TGG 0.616116 5.1:+7662877 None:intergenic
TAACGTTAAGGATGGCTCGT+TGG 0.618624 5.1:+7662885 None:intergenic
CATTAACAGACGAAAATAGG+AGG 0.634319 5.1:-7661566 MS.gene21442:CDS
TAAAATCACTGCCTTCACCA+TGG 0.649046 5.1:-7661406 MS.gene21442:CDS
AAAGCTGAAACAAACAGAGG+TGG 0.651647 5.1:-7661619 MS.gene21442:CDS
AGCTCCCAAAGGTTATGGTG+AGG 0.658770 5.1:-7662821 MS.gene21442:CDS
AATCACAAACAAGCTCCCAA+AGG 0.673939 5.1:-7662832 MS.gene21442:CDS
GGTGGAATAGGGATTCATGG+TGG 0.677474 5.1:+7662909 None:intergenic
TCAAAGATAAACCTAGAACA+AGG 0.685669 5.1:+7662971 None:intergenic
GCAGGCATAGGCATGTACAA+AGG 0.695698 5.1:+7661498 None:intergenic
AACAAAGCTGAAACAAACAG+AGG 0.748355 5.1:-7661622 MS.gene21442:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTATATTAATATTCTGT+TGG - chr5.1:7661876-7661895 MS.gene21442:intron 10.0%
!! CTAATAAAAAATAGTTAATT+TGG + chr5.1:7662521-7662540 None:intergenic 10.0%
!! CTTAAAAAATCTTATATTTA+AGG - chr5.1:7662203-7662222 MS.gene21442:intron 10.0%
!!! ATTTATTTTCTTATCTTATA+AGG - chr5.1:7662378-7662397 MS.gene21442:intron 10.0%
!!! TTTATTTTCTTATCTTATAA+GGG - chr5.1:7662379-7662398 MS.gene21442:intron 10.0%
!! AAAATTGCTCTTATAATTAT+TGG + chr5.1:7662458-7662477 None:intergenic 15.0%
!!! AAAAGTCTTATATTAAAGTA+AGG - chr5.1:7662573-7662592 MS.gene21442:intron 15.0%
!!! TGAGTTTTGTAAAAAAAAAA+AGG + chr5.1:7662286-7662305 None:intergenic 15.0%
!! CCTATATGTAAAATAAATAG+AGG + chr5.1:7662351-7662370 None:intergenic 20.0%
!!! AATATAAGACTTTTTTTGAG+AGG + chr5.1:7662567-7662586 None:intergenic 20.0%
!!! CCTCTATTTATTTTACATAT+AGG - chr5.1:7662348-7662367 MS.gene21442:intron 20.0%
!!! GATATTTTATGAATATCATG+TGG - chr5.1:7662159-7662178 MS.gene21442:intron 20.0%
!!! TAATTTTCATGACTCTATAA+TGG + chr5.1:7662033-7662052 None:intergenic 20.0%
! AAACATTAACAGACGAAAAT+AGG - chr5.1:7662787-7662806 MS.gene21442:CDS 25.0%
! GAGATGAGAAAAATAATTAC+AGG + chr5.1:7661797-7661816 None:intergenic 25.0%
! GTCTTATATTAAAGTAAGGA+GGG - chr5.1:7662577-7662596 MS.gene21442:intron 25.0%
! TGAAAGAGAGAGAAAAAATT+AGG - chr5.1:7662408-7662427 MS.gene21442:CDS 25.0%
! TTAATTCATCTTTCTCAAGT+GGG - chr5.1:7661594-7661613 MS.gene21442:CDS 25.0%
!! AGTCTTATATTAAAGTAAGG+AGG - chr5.1:7662576-7662595 MS.gene21442:intron 25.0%
AAGCAATAGTGATTGTTCTT+TGG + chr5.1:7661741-7661760 None:intergenic 30.0%
AATAAATGTTGGTGCATGTT+TGG - chr5.1:7662671-7662690 MS.gene21442:CDS 30.0%
CAAATGCTAGAAAGAAACTA+AGG - chr5.1:7661711-7661730 MS.gene21442:intron 30.0%
CAGACTAAGCTAATAAATGT+TGG - chr5.1:7662660-7662679 MS.gene21442:CDS 30.0%
GATGAATTAACAACACTATG+AGG + chr5.1:7661584-7661603 None:intergenic 30.0%
GGATTGTAGAAATGAGTATT+TGG + chr5.1:7662978-7662997 None:intergenic 30.0%
GTTAATTCATCTTTCTCAAG+TGG - chr5.1:7661593-7661612 MS.gene21442:CDS 30.0%
TCAAAGATAAACCTAGAACA+AGG + chr5.1:7661388-7661407 None:intergenic 30.0%
! CTGTCTAGCTACTAAATTTT+TGG + chr5.1:7662108-7662127 None:intergenic 30.0%
AAAAAGTTTATGTCCGTACC+TGG + chr5.1:7661991-7662010 None:intergenic 35.0%
AACAAAGCTGAAACAAACAG+AGG - chr5.1:7662734-7662753 MS.gene21442:CDS 35.0%
AACCACAAATCCAAAAGCAA+AGG + chr5.1:7662623-7662642 None:intergenic 35.0%
AAGAAGAAGTAGAAGAAGAG+AGG - chr5.1:7661651-7661670 MS.gene21442:intron 35.0%
ACAAATCCAAAAGCAAAGGA+AGG + chr5.1:7662619-7662638 None:intergenic 35.0%
AGAAGAAGTAGAAGAAGAGA+GGG - chr5.1:7661652-7661671 MS.gene21442:intron 35.0%
CATTAACAGACGAAAATAGG+AGG - chr5.1:7662790-7662809 MS.gene21442:CDS 35.0%
GAATACTTCTACTACTCCAA+AGG - chr5.1:7661406-7661425 MS.gene21442:CDS 35.0%
GGATTTGTGGTTGTTAAGTA+TGG - chr5.1:7662631-7662650 MS.gene21442:CDS 35.0%
TTGAAGTATGGTTCCAGAAT+CGG - chr5.1:7661961-7661980 MS.gene21442:intron 35.0%
! AAAAAGCCTTCCTTTGCTTT+TGG - chr5.1:7662610-7662629 MS.gene21442:CDS 35.0%
! GACTCTATAATGGTGATGTA+CGG + chr5.1:7662023-7662042 None:intergenic 35.0%
! GAGCTTGTTTGTGATTTGTA+CGG + chr5.1:7661520-7661539 None:intergenic 35.0%
!! TTCCTTTGCTTTTGGATTTG+TGG - chr5.1:7662618-7662637 MS.gene21442:CDS 35.0%
AAACAAGCTCCCAAAGGTTA+TGG - chr5.1:7661530-7661549 MS.gene21442:CDS 40.0%
AAAGCTGAAACAAACAGAGG+TGG - chr5.1:7662737-7662756 MS.gene21442:CDS 40.0%
AACCATACTTCAACTTGTCG+CGG + chr5.1:7661954-7661973 None:intergenic 40.0%
AAGTTCCTCACCATAACCTT+TGG + chr5.1:7661543-7661562 None:intergenic 40.0%
AATCACAAACAAGCTCCCAA+AGG - chr5.1:7661524-7661543 MS.gene21442:CDS 40.0%
AGTTCCTCACCATAACCTTT+GGG + chr5.1:7661542-7661561 None:intergenic 40.0%
CGAAAATAGGAGGCTCAAAA+AGG - chr5.1:7662800-7662819 MS.gene21442:CDS 40.0%
GATTCTCTTCACCTTGTTCT+AGG - chr5.1:7661374-7661393 MS.gene21442:CDS 40.0%
TAAAATCACTGCCTTCACCA+TGG - chr5.1:7662950-7662969 MS.gene21442:CDS 40.0%
TAGCGAGACAGTTGAATCTA+AGG - chr5.1:7661928-7661947 MS.gene21442:intron 40.0%
! GAAATGAGTATTTGGAGCCA+TGG + chr5.1:7662970-7662989 None:intergenic 40.0%
! GTGGTGGTAGTTATTTCCTT+TGG + chr5.1:7661425-7661444 None:intergenic 40.0%
AACGAGCCATCCTTAACGTT+AGG - chr5.1:7661473-7661492 MS.gene21442:CDS 45.0%
ACCAGAGAGTCCTAACGTTA+AGG + chr5.1:7661486-7661505 None:intergenic 45.0%
GAGAGTCCTAACGTTAAGGA+TGG + chr5.1:7661482-7661501 None:intergenic 45.0%
TAACGTTAAGGATGGCTCGT+TGG + chr5.1:7661474-7661493 None:intergenic 45.0%
TCCTTAACGTTAGGACTCTC+TGG - chr5.1:7661482-7661501 MS.gene21442:CDS 45.0%
! AGTATTTGGAGCCATGGTGA+AGG + chr5.1:7662964-7662983 None:intergenic 45.0%
!!! AACTTATATTAAATAAATTT+TGG - chr5.1:7662697-7662716 MS.gene21442:CDS 5.0%
AGCTCCCAAAGGTTATGGTG+AGG - chr5.1:7661535-7661554 MS.gene21442:CDS 50.0%
ATTAGAACCACCACCACCGT+CGG + chr5.1:7662931-7662950 None:intergenic 50.0%
GCAGGCATAGGCATGTACAA+AGG + chr5.1:7662861-7662880 None:intergenic 50.0%
GCTGCGGAAGGATTGTTGAA+AGG + chr5.1:7662999-7663018 None:intergenic 50.0%
GGAATAGGGATTCATGGTGG+TGG + chr5.1:7661447-7661466 None:intergenic 50.0%
GGAGGTGGAATAGGGATTCA+TGG + chr5.1:7661453-7661472 None:intergenic 50.0%
GGTGGAATAGGGATTCATGG+TGG + chr5.1:7661450-7661469 None:intergenic 50.0%
TCTTTCGCAAGAAGGGCAGA+TGG + chr5.1:7662895-7662914 None:intergenic 50.0%
TGCCCTTCTTGCGAAAGACT+CGG - chr5.1:7662897-7662916 MS.gene21442:CDS 50.0%
!! ATAGGGATTCATGGTGGTGG+TGG + chr5.1:7661444-7661463 None:intergenic 50.0%
!! GAGAGTGCTGCAAGTGAAGA+GGG - chr5.1:7661616-7661635 MS.gene21442:CDS 50.0%
CAGAATCGGAGAGCCAGGTA+CGG - chr5.1:7661975-7661994 MS.gene21442:intron 55.0%
CGTTAAGGATGGCTCGTTGG+AGG + chr5.1:7661471-7661490 None:intergenic 55.0%
GCAAGAAGGGCAGATGGAGA+GGG + chr5.1:7662889-7662908 None:intergenic 55.0%
GGCCGAGTCTTTCGCAAGAA+GGG + chr5.1:7662902-7662921 None:intergenic 55.0%
GGCTCGTTGGAGGTGGAATA+GGG + chr5.1:7661461-7661480 None:intergenic 55.0%
TAAGGATGGCTCGTTGGAGG+TGG + chr5.1:7661468-7661487 None:intergenic 55.0%
TGGCTCGTTGGAGGTGGAAT+AGG + chr5.1:7661462-7661481 None:intergenic 55.0%
! GGCCGCGACAAGTTGAAGTA+TGG - chr5.1:7661949-7661968 MS.gene21442:intron 55.0%
!! GGAGAGTGCTGCAAGTGAAG+AGG - chr5.1:7661615-7661634 MS.gene21442:CDS 55.0%
CAGATGGAGAGGGTAGCTGC+AGG + chr5.1:7662879-7662898 None:intergenic 60.0%
CGCAAGAAGGGCAGATGGAG+AGG + chr5.1:7662890-7662909 None:intergenic 60.0%
CGGCCGAGTCTTTCGCAAGA+AGG + chr5.1:7662903-7662922 None:intergenic 60.0%
GAGAGGGTAGCTGCAGGCAT+AGG + chr5.1:7662873-7662892 None:intergenic 60.0%
GGTTCCAGAATCGGAGAGCC+AGG - chr5.1:7661970-7661989 MS.gene21442:intron 60.0%
! CGTACCTGGCTCTCCGATTC+TGG + chr5.1:7661977-7661996 None:intergenic 60.0%
!! GGGATTCATGGTGGTGGTGG+TGG + chr5.1:7661441-7661460 None:intergenic 60.0%
AGACTCGGCCGCGTCGCCGA+CGG - chr5.1:7662912-7662931 MS.gene21442:CDS 75.0%
CACCACCACCGTCGGCGACG+CGG + chr5.1:7662923-7662942 None:intergenic 75.0%
!! CGCGTCGCCGACGGTGGTGG+TGG - chr5.1:7662921-7662940 MS.gene21442:CDS 80.0%
! CTCGGCCGCGTCGCCGACGG+TGG - chr5.1:7662915-7662934 MS.gene21442:CDS 85.0%
! GGCCGCGTCGCCGACGGTGG+TGG - chr5.1:7662918-7662937 MS.gene21442:CDS 85.0%


Chromosome Type Strat End Strand Name
chr5.1 gene 7661353 7663025 7661353 ID=MS.gene21442
chr5.1 mRNA 7661353 7663025 7661353 ID=MS.gene21442.t1;Parent=MS.gene21442
chr5.1 exon 7662582 7663025 7662582 ID=MS.gene21442.t1.exon1;Parent=MS.gene21442.t1
chr5.1 CDS 7662582 7663025 7662582 ID=cds.MS.gene21442.t1;Parent=MS.gene21442.t1
chr5.1 exon 7662387 7662466 7662387 ID=MS.gene21442.t1.exon2;Parent=MS.gene21442.t1
chr5.1 CDS 7662387 7662466 7662387 ID=cds.MS.gene21442.t1;Parent=MS.gene21442.t1
chr5.1 exon 7661353 7661644 7661353 ID=MS.gene21442.t1.exon3;Parent=MS.gene21442.t1
chr5.1 CDS 7661353 7661644 7661353 ID=cds.MS.gene21442.t1;Parent=MS.gene21442.t1
Gene Sequence

>MS.gene21442

ATGGGTCTTAATAATGATCAAGATTCTCTTCACCTTGTTCTAGGTTTATCTTTGAATACTTCTACTACTCCAAAGGAAATAACTACCACCACCACCACCATGAATCCCTATTCCACCTCCAACGAGCCATCCTTAACGTTAGGACTCTCTGGTGAGAGTTATAACCGTACAAATCACAAACAAGCTCCCAAAGGTTATGGTGAGGAACTTTGTAGACAAACTTCATCACCTCATAGTGTTGTTAATTCATCTTTCTCAAGTGGGAGAGTGCTGCAAGTGAAGAGGGAGAGAGATGAAGAAGAAGAAGTAGAAGAAGAGAGGGTTTCTTCAAGAGTTAGTGATGAAGATGAAGATGCTACAAATGCTAGAAAGAAACTAAGGCTTACCAAAGAACAATCACTATTGCTTGAAGAAAGCTTCAAACTACATAGCACTCTCAATCCTGTAATTATTTTTCTCATCTCTTCTAAATTATAATTAATTAAATTAACTAATTAAATAATTAGAGTAATGATTAATAATAATATTATATTAATATTCTGTTGGATTTGATTTTCAGAAACAAAAACAAGCTTTAGCGAGACAGTTGAATCTAAGGCCGCGACAAGTTGAAGTATGGTTCCAGAATCGGAGAGCCAGGTACGGACATAAACTTTTTCATTATATACCGTACATCACCATTATAGAGTCATGAAAATTAATATTGAGATATATTTAAATAAATTGATACAAAAAAATTATGTAATTATCTACCAAAAATTTAGTAGCTAGACAGAGTTTCTGCATTTTTTTTGTTGCTATTTCTAGATATTTTATGAATATCATGTGGTATATTGTATGTATAAATCTTCTTAAAAAATCTTATATTTAAGGATAATATTTTTGATAAAAAAATTAATAGTAATTTTTTTTTAACATCTATTAATTTGTCCTTTTTTTTTTTACAAAACTCATTTTGCATTATTTATTATATTAATTATTTTTTTACTAAATCACCTCTATTTATTTTACATATAGGAAATATAATTTATTTTCTTATCTTATAAGGGTTAATATGAAAGAGAGAGAAAAAATTAGGATAATAATATATACAACTATGTTGCCAATAATTATAAGAGCAATTTTAAAAATCGATACAGATTATTCACAAATTTATTATTATTAACCAAATTAACTATTTTTTATTAGTTAAATAATTTTTTTTATTAAATCCTCTCAAAAAAAGTCTTATATTAAAGTAAGGAGGGAATATAATTTAAAAAGCCTTCCTTTGCTTTTGGATTTGTGGTTGTTAAGTATGGATTTGACAGACTAAGCTAATAAATGTTGGTGCATGTTTGGTGTAACTTATATTAAATAAATTTTGGTTTGAATTTTACAGAACAAAGCTGAAACAAACAGAGGTGGATTGCGAGTTCTTGAAGAAATGTTGTGAAACATTAACAGACGAAAATAGGAGGCTCAAAAAGGAGTTGCAAGAGTTGAAATCATTGAAAGTAGCACAACCTTTGTACATGCCTATGCCTGCAGCTACCCTCTCCATCTGCCCTTCTTGCGAAAGACTCGGCCGCGTCGCCGACGGTGGTGGTGGTTCTAATAAAATCACTGCCTTCACCATGGCTCCAAATACTCATTTCTACAATCCTTTCAACAATCCTTCCGCAGCATGTTAA
Protein sequence

>MS.gene21442.t1

MGLNNDQDSLHLVLGLSLNTSTTPKEITTTTTTMNPYSTSNEPSLTLGLSGESYNRTNHKQAPKGYGEELCRQTSSPHSVVNSSFSSGRVLQVKRERDEEEEVEEERVSSRVSDEDEDATNARKKLRLTKEQSLLLEESFKLHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLKKELQELKSLKVAQPLYMPMPAATLSICPSCERLGRVADGGGGSNKITAFTMAPNTHFYNPFNNPSAAC