AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene21454

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene21454.t1 MTR_5g014640 94.295 298 15 1 18 315 1 296 0.0 555
MS.gene21454.t1 MTR_4g097940 46.037 328 117 15 18 315 1 298 1.20e-69 219
MS.gene21454.t1 MTR_4g097920 42.988 328 127 15 18 315 1 298 1.58e-63 204
MS.gene21454.t1 MTR_4g097920 42.492 313 121 14 32 315 1 283 1.79e-58 190
MS.gene21454.t1 MTR_2g010450 34.891 321 183 11 19 315 5 323 2.90e-44 154
MS.gene21454.t1 MTR_5g014600 42.180 211 101 6 121 315 102 307 9.03e-42 147
MS.gene21454.t1 MTR_4g092700 33.670 297 167 10 32 315 24 303 9.26e-41 145
MS.gene21454.t1 MTR_5g014520 38.235 238 127 4 80 315 83 302 1.05e-40 145
MS.gene21454.t1 MTR_2g104550 36.522 230 120 6 92 314 73 283 1.95e-37 135
MS.gene21454.t1 MTR_0250s0040 44.295 149 82 1 168 315 85 233 4.85e-36 130
MS.gene21454.t1 MTR_4g009540 39.899 198 100 4 133 314 108 302 8.56e-36 131
MS.gene21454.t1 MTR_4g009540 39.899 198 100 4 133 314 108 302 1.65e-35 131
MS.gene21454.t1 MTR_4g067010 43.506 154 81 2 164 315 140 289 2.42e-35 130
MS.gene21454.t1 MTR_4g009110 43.902 164 82 3 158 314 161 321 2.51e-35 131
MS.gene21454.t1 MTR_0011s0260 45.270 148 80 1 169 315 181 328 1.56e-34 129
MS.gene21454.t1 MTR_0011s0210 45.638 149 78 2 169 315 181 328 1.88e-34 129
MS.gene21454.t1 MTR_0246s0020 42.941 170 82 5 155 313 181 346 1.90e-34 129
MS.gene21454.t1 MTR_0246s0020 42.941 170 82 5 155 313 181 346 2.06e-34 129
MS.gene21454.t1 MTR_6g047570 43.046 151 85 1 166 315 154 304 1.24e-33 126
MS.gene21454.t1 MTR_2g104560 41.772 158 83 5 162 315 45 197 2.63e-33 122
MS.gene21454.t1 MTR_8g069740 34.375 224 127 5 96 313 49 258 4.28e-33 123
MS.gene21454.t1 MTR_5g014560 40.116 172 98 3 148 315 106 276 6.22e-33 124
MS.gene21454.t1 MTR_4g066460 43.017 179 85 4 143 315 130 297 1.66e-32 123
MS.gene21454.t1 MTR_2g104490 34.375 224 121 6 104 314 69 279 1.89e-31 119
MS.gene21454.t1 MTR_2g104490 34.375 224 121 6 104 314 69 279 2.38e-31 119
MS.gene21454.t1 MTR_8g009020 40.127 157 82 3 164 310 136 290 2.56e-31 120
MS.gene21454.t1 MTR_7g080780 41.722 151 80 1 164 314 158 300 2.71e-31 120
MS.gene21454.t1 MTR_7g080780 41.722 151 80 1 164 314 145 287 2.75e-31 119
MS.gene21454.t1 MTR_4g097950 39.521 167 83 3 150 301 45 208 4.61e-30 114
MS.gene21454.t1 MTR_4g066380 40.230 174 96 4 143 315 128 294 9.44e-30 115
MS.gene21454.t1 MTR_0246s0050 36.810 163 94 3 155 315 134 289 3.19e-28 111
MS.gene21454.t1 MTR_4g098035 36.810 163 94 3 155 315 155 310 4.84e-28 111
MS.gene21454.t1 MTR_2g104650 41.935 155 84 2 164 313 87 240 1.09e-27 109
MS.gene21454.t1 MTR_2g104590 35.152 165 81 3 154 313 52 195 5.10e-27 106
MS.gene21454.t1 MTR_8g009010 36.667 150 59 2 164 312 127 241 2.62e-24 100
MS.gene21454.t1 MTR_2g104530 34.921 189 100 4 128 311 72 242 3.20e-24 99.8
MS.gene21454.t1 MTR_2g104500 38.621 145 79 3 171 312 104 241 3.33e-24 99.8
MS.gene21454.t1 MTR_6g047550 63.636 66 24 0 166 231 168 233 2.43e-21 92.0
MS.gene21454.t1 MTR_8g067280 36.196 163 70 5 164 301 451 604 2.57e-20 91.7
MS.gene21454.t1 MTR_1g072320 34.532 139 82 2 172 301 471 609 3.14e-18 85.5
MS.gene21454.t1 MTR_5g030430 35.220 159 87 3 164 306 482 640 8.38e-18 84.3
MS.gene21454.t1 MTR_7g117670 37.705 122 51 3 172 283 403 509 1.12e-17 84.0
MS.gene21454.t1 MTR_8g027495 37.391 115 53 2 172 280 459 560 9.19e-17 81.3
MS.gene21454.t1 MTR_5g014550 35.897 117 72 2 201 315 54 169 1.30e-16 77.4
MS.gene21454.t1 MTR_4g009420 36.885 122 60 1 194 315 65 169 1.64e-16 77.0
MS.gene21454.t1 MTR_4g009420 36.885 122 60 1 194 315 65 169 2.22e-16 76.6
MS.gene21454.t1 MTR_7g451650 34.426 122 71 1 194 315 57 169 9.02e-16 74.7
MS.gene21454.t1 MTR_8g024770 36.029 136 71 4 172 295 280 411 1.57e-15 77.0
MS.gene21454.t1 MTR_8g024790 32.117 137 91 1 172 306 292 428 2.85e-15 76.3
MS.gene21454.t1 MTR_7g451650 34.426 122 71 1 194 315 57 169 4.24e-15 73.2
MS.gene21454.t1 MTR_7g083900 32.075 159 93 3 171 315 286 443 4.55e-15 75.9
MS.gene21454.t1 MTR_7g083900 32.075 159 93 3 171 315 286 443 4.61e-15 75.9
MS.gene21454.t1 MTR_4g009510 33.333 135 79 3 182 315 53 177 8.98e-15 72.4
MS.gene21454.t1 MTR_8g064700 25.150 167 119 2 155 315 228 394 7.67e-14 72.0
MS.gene21454.t1 MTR_3g030700 29.834 181 103 7 147 309 166 340 2.21e-13 70.5
MS.gene21454.t1 MTR_1g112680 32.836 134 81 3 103 235 256 381 3.77e-13 70.1
MS.gene21454.t1 MTR_7g096350 34.146 123 54 3 162 280 342 441 4.38e-13 70.1
MS.gene21454.t1 MTR_7g050350 31.897 116 70 1 200 315 1 107 1.06e-12 64.7
MS.gene21454.t1 MTR_7g451650 31.897 116 70 1 200 315 1 107 1.06e-12 64.7
MS.gene21454.t1 MTR_4g057270 31.206 141 82 4 173 304 151 285 1.19e-12 68.2
MS.gene21454.t1 MTR_3g498695 29.747 158 96 4 171 315 298 453 1.29e-12 68.6
MS.gene21454.t1 MTR_3g498695 29.747 158 96 4 171 315 298 453 1.34e-12 68.6
MS.gene21454.t1 MTR_8g098275 28.313 166 83 4 172 304 402 564 2.34e-12 67.8
MS.gene21454.t1 MTR_8g098275 28.313 166 83 4 172 304 245 407 2.82e-12 67.4
MS.gene21454.t1 MTR_8g098275 28.313 166 83 4 172 304 309 471 2.96e-12 67.4
MS.gene21454.t1 MTR_2g084280 30.714 140 84 4 173 306 135 267 1.46e-11 64.7
MS.gene21454.t1 MTR_5g030770 28.112 249 146 8 85 309 47 286 3.30e-11 63.5
MS.gene21454.t1 MTR_2g038040 24.309 181 122 4 149 314 29 209 7.51e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene21454.t1 AT4G37850 35.922 309 166 12 19 310 1 294 1.84e-43 152
MS.gene21454.t1 AT4G37850 35.922 309 166 12 19 310 1 294 1.84e-43 152
MS.gene21454.t1 AT2G22760 46.497 157 80 1 163 315 111 267 2.75e-41 145
MS.gene21454.t1 AT2G22760 46.497 157 80 1 163 315 111 267 4.61e-41 145
MS.gene21454.t1 AT2G22750 33.939 330 145 13 19 310 5 299 2.09e-40 144
MS.gene21454.t1 AT2G22750 33.939 330 145 13 19 310 1 295 2.10e-40 144
MS.gene21454.t1 AT2G22750 33.939 330 145 13 19 310 5 299 2.42e-40 144
MS.gene21454.t1 AT2G22750 46.951 164 61 3 163 310 118 271 7.17e-38 137
MS.gene21454.t1 AT2G22750 46.951 164 61 3 163 310 118 271 7.57e-38 137
MS.gene21454.t1 AT2G22770 42.308 182 87 3 149 312 108 289 3.75e-34 127
MS.gene21454.t1 AT4G17880 30.556 216 116 6 108 306 354 552 2.22e-20 92.0
MS.gene21454.t1 AT5G46760 34.356 163 80 4 162 306 402 555 2.78e-19 88.6
MS.gene21454.t1 AT1G32640 35.099 151 92 3 162 306 439 589 3.00e-17 82.8
MS.gene21454.t1 AT1G01260 35.099 151 64 4 167 307 429 555 3.91e-16 79.3
MS.gene21454.t1 AT1G01260 35.099 151 64 4 167 307 429 555 3.91e-16 79.3
MS.gene21454.t1 AT1G01260 35.099 151 64 4 167 307 429 555 3.91e-16 79.3
MS.gene21454.t1 AT2G46510 31.250 144 78 3 162 301 382 508 4.68e-16 79.0
MS.gene21454.t1 AT5G57150 27.222 180 111 3 149 313 32 206 1.63e-15 74.7
MS.gene21454.t1 AT5G57150 27.222 180 111 3 149 313 33 207 2.05e-15 74.3
MS.gene21454.t1 AT5G57150 27.222 180 111 3 149 313 33 207 2.15e-15 74.3
MS.gene21454.t1 AT5G57150 27.222 180 111 3 149 313 33 207 2.85e-15 74.7
MS.gene21454.t1 AT5G57150 27.222 180 111 3 149 313 32 206 3.44e-15 74.3
MS.gene21454.t1 AT4G09820 34.884 129 63 2 172 299 364 472 1.06e-14 75.1
MS.gene21454.t1 AT1G12860 30.921 152 98 3 171 315 267 418 2.02e-14 73.9
MS.gene21454.t1 AT1G12860 30.921 152 98 3 171 315 267 418 2.84e-14 73.6
MS.gene21454.t1 AT2G16910 28.846 156 88 4 172 304 315 470 9.12e-14 72.0
MS.gene21454.t1 AT4G29930 30.137 146 89 3 171 313 54 189 1.27e-13 69.7
MS.gene21454.t1 AT4G29930 30.345 145 88 3 172 313 55 189 1.63e-13 69.3
MS.gene21454.t1 AT4G29930 30.822 146 89 3 172 313 55 192 1.85e-13 68.9
MS.gene21454.t1 AT1G63650 30.625 160 81 5 172 305 406 561 1.17e-12 68.9
MS.gene21454.t1 AT1G63650 30.625 160 81 5 172 305 406 561 1.17e-12 68.9
MS.gene21454.t1 AT1G63650 30.625 160 81 5 172 305 406 561 1.17e-12 68.9
MS.gene21454.t1 AT4G00870 29.927 137 92 1 172 304 250 386 3.78e-12 67.0
MS.gene21454.t1 AT4G16430 45.333 75 37 1 162 232 307 381 4.52e-12 67.0
MS.gene21454.t1 AT3G26744 30.128 156 98 3 171 315 307 462 9.34e-12 65.9
MS.gene21454.t1 AT4G29930 26.667 165 99 3 171 313 54 218 9.36e-12 64.7
MS.gene21454.t1 AT4G29930 26.667 165 99 3 171 313 54 218 9.36e-12 64.7
MS.gene21454.t1 AT3G26744 30.128 156 98 3 171 315 307 462 1.14e-11 65.9
MS.gene21454.t1 AT3G26744 30.128 156 98 3 171 315 307 462 1.14e-11 65.9
MS.gene21454.t1 AT3G26744 30.128 156 98 3 171 315 307 462 1.14e-11 65.9
MS.gene21454.t1 AT4G29930 26.829 164 98 3 172 313 55 218 1.18e-11 64.3
MS.gene21454.t1 AT5G65640 31.293 147 89 4 167 309 174 312 6.26e-11 63.2

Find 56 sgRNAs with CRISPR-Local

Find 333 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATACTCTTACTTCGATTTC+AGG 0.236620 5.3:-7771029 None:intergenic
GTTTCAACTGGGAAACAATT+TGG 0.250112 5.3:-7766839 None:intergenic
TACTTTGGACAGTGAGATTA+AGG 0.260165 5.3:-7771130 None:intergenic
TTCAGGAAGTGGTTGGTTAT+TGG 0.276191 5.3:-7771012 None:intergenic
GCTCTTTCAGCCATTGTTCC+TGG 0.288584 5.3:+7767208 MS.gene21454:CDS
CCAAAGTTGTCGAATAATAT+TGG 0.304765 5.3:-7766788 None:intergenic
TCGAGCTTGAGCAGTGTTCC+TGG 0.329696 5.3:-7767131 None:intergenic
CGATTTGATTAGATGTGGTA+TGG 0.375743 5.3:-7766431 None:intergenic
AATGAATTGAGGTGATGAAT+AGG 0.381227 5.3:-7766921 None:intergenic
CATTGTTCCTGGCCTCAAAA+AGG 0.384959 5.3:+7767219 MS.gene21454:CDS
TCATCAAGATGAGTTTCAAC+TGG 0.389714 5.3:-7766851 None:intergenic
CTTCCAGCTTTGGTTTCTCA+AGG 0.393979 5.3:+7767055 MS.gene21454:CDS
TAAAATTGCTTAGAAGCAAT+TGG 0.399867 5.3:-7766968 None:intergenic
GTTGTTTCCAAAGGGCAAAA+AGG 0.400410 5.3:-7771156 None:intergenic
CCAATATTATTCGACAACTT+TGG 0.407380 5.3:+7766788 MS.gene21454:CDS
AGTAGTATGCTTACAAGTTC+AGG 0.414356 5.3:-7766507 None:intergenic
AGAAGCAATTGGTGTTGAAC+TGG 0.425456 5.3:-7766957 None:intergenic
ATGGACAAAGCTTCTGTGTT+GGG 0.439391 5.3:+7770840 MS.gene21454:CDS
CAAGAGAATCCATCGGGTAT+TGG 0.448559 5.3:-7766760 None:intergenic
TGAAAGAGCGATGAAACTTC+GGG 0.456547 5.3:-7767194 None:intergenic
GGACGTGCCGCTACGGTGCT+TGG 0.467945 5.3:+7771095 MS.gene21454:CDS
ATCAACAATGTTGTTTCCAA+AGG 0.469768 5.3:-7771165 None:intergenic
TCAACAATGTTGTTTCCAAA+GGG 0.475298 5.3:-7771164 None:intergenic
CTGAAAGAGCGATGAAACTT+CGG 0.488970 5.3:-7767195 None:intergenic
TGAGGTGATGAATAGGAAGA+AGG 0.490585 5.3:-7766914 None:intergenic
CTTCGATTTCAGGAAGTGGT+TGG 0.508259 5.3:-7771019 None:intergenic
TAAAACCTAAAGTCGAGAAA+AGG 0.508413 5.3:+7767011 MS.gene21454:CDS
TGTTCCTGGTCTGATTCACT+TGG 0.510038 5.3:-7767117 None:intergenic
GAGGTGATGAATAGGAAGAA+GGG 0.522927 5.3:-7766913 None:intergenic
CTTACTTCGATTTCAGGAAG+TGG 0.529255 5.3:-7771023 None:intergenic
GATTTGATTAGATGTGGTAT+GGG 0.531705 5.3:-7766430 None:intergenic
GAACCTTGAGAAACCAAAGC+TGG 0.540922 5.3:-7767058 None:intergenic
ACAAGTTCAGGCACATAGGT+GGG 0.548457 5.3:-7766495 None:intergenic
ACAAGCACGTTTGCAGACAC+TGG 0.553923 5.3:+7770890 MS.gene21454:CDS
AACTTCGATTTGATTAGATG+TGG 0.560569 5.3:-7766436 None:intergenic
ACACAGTGGACGTGCCGCTA+CGG 0.562208 5.3:+7771088 MS.gene21454:CDS
CAAGTTCAGGCACATAGGTG+GGG 0.574321 5.3:-7766494 None:intergenic
CTTCTTTAACCAATACCCGA+TGG 0.574424 5.3:+7766751 MS.gene21454:CDS
TGTTCAAAAGAAATGAATTG+AGG 0.577900 5.3:-7766932 None:intergenic
AACTGGGAAACAATTTGGTG+TGG 0.582222 5.3:-7766834 None:intergenic
TCAAGCTCGAGAACATGTAA+TGG 0.585662 5.3:+7767144 MS.gene21454:CDS
TACAAGTTCAGGCACATAGG+TGG 0.586428 5.3:-7766496 None:intergenic
GAGATGCAAGAGAATCCATC+GGG 0.590902 5.3:-7766766 None:intergenic
GCTTACAAGTTCAGGCACAT+AGG 0.592149 5.3:-7766499 None:intergenic
CTCATCTTGATGATCAAACA+AGG 0.597867 5.3:+7766861 MS.gene21454:CDS
CATCAAGATGAGTTTCAACT+GGG 0.598938 5.3:-7766850 None:intergenic
GATGGACAAAGCTTCTGTGT+TGG 0.607222 5.3:+7770839 MS.gene21454:intron
AGATCTCTTCACTTGAACTG+TGG 0.609751 5.3:-7770946 None:intergenic
GGAGATGCAAGAGAATCCAT+CGG 0.627162 5.3:-7766767 None:intergenic
AAGTTCAGGCACATAGGTGG+GGG 0.650925 5.3:-7766493 None:intergenic
AATGGCCGAAAGAAAACGAA+GGG 0.657033 5.3:+7767162 MS.gene21454:CDS
TAATTGGCCAAGCACCGTAG+CGG 0.678187 5.3:-7771102 None:intergenic
AGCACGTTTGCAGACACTGG+AGG 0.686426 5.3:+7770893 MS.gene21454:CDS
ATAACCAAGTGAATCAGACC+AGG 0.687464 5.3:+7767113 MS.gene21454:CDS
TAATGGCCGAAAGAAAACGA+AGG 0.695210 5.3:+7767161 MS.gene21454:CDS
ATTCAATGTGACAAACACAG+TGG 0.762327 5.3:+7771074 MS.gene21454:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCAATAATTTATTTTTCTTT+TGG + chr5.3:7767417-7767436 MS.gene21454:intron 10.0%
!! TACAATATAAATATTGCAAT+TGG - chr5.3:7767796-7767815 None:intergenic 15.0%
!!! AAGTTTATGAATTTTAAGAT+AGG - chr5.3:7766540-7766559 None:intergenic 15.0%
!!! TTGTTTTTATTTCATTTTCT+AGG + chr5.3:7767619-7767638 MS.gene21454:intron 15.0%
!! ACATTAATGATCCATATTAA+AGG + chr5.3:7767327-7767346 MS.gene21454:intron 20.0%
!! CAATATTATTGTTGTGAATT+CGG + chr5.3:7767845-7767864 MS.gene21454:intron 20.0%
!!! TATTTTCTTATGATCAGATT+AGG - chr5.3:7767482-7767501 None:intergenic 20.0%
!!! TCTTTAATTACTTTTGAACA+GGG + chr5.3:7766713-7766732 MS.gene21454:intron 20.0%
! AAAAACATTGTAAACACCTT+GGG - chr5.3:7768251-7768270 None:intergenic 25.0%
! ATTATAACATGTTTGTGAGT+TGG - chr5.3:7767258-7767277 None:intergenic 25.0%
! ATTGTATATGACCAAATCTT+TGG - chr5.3:7769687-7769706 None:intergenic 25.0%
! GTAGTATGTTGATATAGAAA+TGG - chr5.3:7767296-7767315 None:intergenic 25.0%
! TAAAATTGCTTAGAAGCAAT+TGG - chr5.3:7766971-7766990 None:intergenic 25.0%
! TATTGACGAAAAACATGAAA+TGG - chr5.3:7767403-7767422 None:intergenic 25.0%
! TCTTACAAAGAGATACAAAT+GGG + chr5.3:7768124-7768143 MS.gene21454:intron 25.0%
! TGATATAGAAATGGTTTGAA+TGG - chr5.3:7767287-7767306 None:intergenic 25.0%
! TGTTCAAAAGAAATGAATTG+AGG - chr5.3:7766935-7766954 None:intergenic 25.0%
! TTGGTAAGTTCAACTTAATT+AGG - chr5.3:7767777-7767796 None:intergenic 25.0%
!! TCTAATCAAATCGAAGTTTT+AGG + chr5.3:7766441-7766460 MS.gene21454:CDS 25.0%
!! TGAGATTAAGGTTTTCTAAT+TGG - chr5.3:7771121-7771140 None:intergenic 25.0%
!! TTAGTCTTCGAGAAAAAAAT+AGG + chr5.3:7767512-7767531 MS.gene21454:intron 25.0%
!!! CTCTTTAATTACTTTTGAAC+AGG + chr5.3:7766712-7766731 MS.gene21454:intron 25.0%
!!! GTTTTTTCACAAACTCAATT+TGG + chr5.3:7768619-7768638 MS.gene21454:intron 25.0%
AAACCACAAGCAAAAGATAA+AGG + chr5.3:7768000-7768019 MS.gene21454:intron 30.0%
AAATCAAAGGAGGTAACTTT+AGG - chr5.3:7768310-7768329 None:intergenic 30.0%
AAATGGTCACTAATATTGCT+AGG - chr5.3:7767386-7767405 None:intergenic 30.0%
AACCACAAGCAAAAGATAAA+GGG + chr5.3:7768001-7768020 MS.gene21454:intron 30.0%
AAGAGTAGACATCAAAAAGT+TGG + chr5.3:7767558-7767577 MS.gene21454:intron 30.0%
AATCAAAGGAGGTAACTTTA+GGG - chr5.3:7768309-7768328 None:intergenic 30.0%
AATGAATTGAGGTGATGAAT+AGG - chr5.3:7766924-7766943 None:intergenic 30.0%
AATGGTCACTAATATTGCTA+GGG - chr5.3:7767385-7767404 None:intergenic 30.0%
AGAGTAGACATCAAAAAGTT+GGG + chr5.3:7767559-7767578 MS.gene21454:intron 30.0%
AGTAATGTTCTACTTACACT+AGG + chr5.3:7767690-7767709 MS.gene21454:intron 30.0%
ATCCATATTAAAGGCTGAAA+TGG + chr5.3:7767336-7767355 MS.gene21454:intron 30.0%
ATGTGAATTCTTCATGAGTA+CGG - chr5.3:7768894-7768913 None:intergenic 30.0%
CCAAAGTTGTCGAATAATAT+TGG - chr5.3:7766791-7766810 None:intergenic 30.0%
CCAATATTATTCGACAACTT+TGG + chr5.3:7766788-7766807 MS.gene21454:CDS 30.0%
CTCTTACAAAGAGATACAAA+TGG + chr5.3:7768123-7768142 MS.gene21454:intron 30.0%
GAAAAACATTGTAAACACCT+TGG - chr5.3:7768252-7768271 None:intergenic 30.0%
GATTTGATTAGATGTGGTAT+GGG - chr5.3:7766433-7766452 None:intergenic 30.0%
GCTTGTGTTTACTTTGATAT+TGG - chr5.3:7767925-7767944 None:intergenic 30.0%
TAAAACCTAAAGTCGAGAAA+AGG + chr5.3:7767011-7767030 MS.gene21454:CDS 30.0%
TCTACAAAGAATCAATACCA+AGG + chr5.3:7769135-7769154 MS.gene21454:intron 30.0%
TCTTTGATTAGAGTTCTCTT+GGG - chr5.3:7768279-7768298 None:intergenic 30.0%
TTGAAGGATTCAAATGATCT+CGG + chr5.3:7769497-7769516 MS.gene21454:intron 30.0%
TTGAATGCAAGGAAAAGAAA+AGG - chr5.3:7768718-7768737 None:intergenic 30.0%
TTGATTCCTAGATTAGATCT+AGG - chr5.3:7767967-7767986 None:intergenic 30.0%
TTTCACAAACTCAATTTGGA+AGG + chr5.3:7768623-7768642 MS.gene21454:intron 30.0%
! AACTTCGATTTGATTAGATG+TGG - chr5.3:7766439-7766458 None:intergenic 30.0%
! CAACAAAATCCTTGATGATT+TGG - chr5.3:7769582-7769601 None:intergenic 30.0%
! GAAGGCATAAACAACAATTA+TGG + chr5.3:7770808-7770827 MS.gene21454:intron 30.0%
! GATAAGATCATACCTTTTTG+AGG - chr5.3:7767234-7767253 None:intergenic 30.0%
! GTTTTACATCGGAATAATCA+AGG - chr5.3:7766997-7767016 None:intergenic 30.0%
!! AATTACTTTTGAACAGGGAA+TGG + chr5.3:7766718-7766737 MS.gene21454:intron 30.0%
!! ATCAACAATGTTGTTTCCAA+AGG - chr5.3:7771168-7771187 None:intergenic 30.0%
!! TCAACAATGTTGTTTCCAAA+GGG - chr5.3:7771167-7771186 None:intergenic 30.0%
!! TTATTTTTCTGGTCGAACTT+TGG + chr5.3:7766645-7766664 MS.gene21454:intron 30.0%
!!! TATCGATGTTTTGATCTTCT+TGG - chr5.3:7766891-7766910 None:intergenic 30.0%
!!! TCATTTTCTAGGATCAAATC+AGG + chr5.3:7767630-7767649 MS.gene21454:intron 30.0%
!!! TTGACCAAGCTTTATTTTTC+TGG + chr5.3:7766634-7766653 MS.gene21454:intron 30.0%
AAAACTTGGGAAATCAAAGG+AGG - chr5.3:7768320-7768339 None:intergenic 35.0%
AACTTCAAGAGAGGAAAACT+TGG - chr5.3:7768334-7768353 None:intergenic 35.0%
ACAACTCTACTCATTCAAGA+TGG - chr5.3:7769642-7769661 None:intergenic 35.0%
ACAATTATGGTATGTGCAGA+TGG + chr5.3:7770821-7770840 MS.gene21454:intron 35.0%
ACTTCAAGAGAGGAAAACTT+GGG - chr5.3:7768333-7768352 None:intergenic 35.0%
AGGAAAACTTGGGAAATCAA+AGG - chr5.3:7768323-7768342 None:intergenic 35.0%
AGTAGTATGCTTACAAGTTC+AGG - chr5.3:7766510-7766529 None:intergenic 35.0%
ATTCAATGTGACAAACACAG+TGG + chr5.3:7771074-7771093 MS.gene21454:CDS 35.0%
ATTGGTGAGATTGGGAAAAT+GGG - chr5.3:7768200-7768219 None:intergenic 35.0%
CAAGGAAAAGAAAAGGAGAT+TGG - chr5.3:7768711-7768730 None:intergenic 35.0%
CAATGTTCTCCAAATCATCA+AGG + chr5.3:7769570-7769589 MS.gene21454:intron 35.0%
CACCATTTCAGCCTTTAATA+TGG - chr5.3:7767341-7767360 None:intergenic 35.0%
CATCAAGATGAGTTTCAACT+GGG - chr5.3:7766853-7766872 None:intergenic 35.0%
CATTTCCTCTTGAAACACTA+AGG + chr5.3:7769357-7769376 MS.gene21454:intron 35.0%
CCAATACAAACTATGATGTG+TGG + chr5.3:7767881-7767900 MS.gene21454:intron 35.0%
CGATTTGATTAGATGTGGTA+TGG - chr5.3:7766434-7766453 None:intergenic 35.0%
CTTAGTGTTTCAAGAGGAAA+TGG - chr5.3:7769359-7769378 None:intergenic 35.0%
GAGATCATTTGAATCCTTCA+AGG - chr5.3:7769498-7769517 None:intergenic 35.0%
GAGTAGACATCAAAAAGTTG+GGG + chr5.3:7767560-7767579 MS.gene21454:intron 35.0%
GATACTCTTACTTCGATTTC+AGG - chr5.3:7771032-7771051 None:intergenic 35.0%
GCTGAAGACAACAAAAAAAC+TGG + chr5.3:7770921-7770940 MS.gene21454:CDS 35.0%
GGGAAAATGGGTAGAAATTA+GGG - chr5.3:7768188-7768207 None:intergenic 35.0%
GTCTTTGATTAGAGTTCTCT+TGG - chr5.3:7768280-7768299 None:intergenic 35.0%
GTGATTACCTAAAAGACCAA+GGG - chr5.3:7768831-7768850 None:intergenic 35.0%
GTTTCAACTGGGAAACAATT+TGG - chr5.3:7766842-7766861 None:intergenic 35.0%
TACTTTGGACAGTGAGATTA+AGG - chr5.3:7771133-7771152 None:intergenic 35.0%
TCATCAAGATGAGTTTCAAC+TGG - chr5.3:7766854-7766873 None:intergenic 35.0%
TCATCATCAATTTGAAGGCA+AGG - chr5.3:7768667-7768686 None:intergenic 35.0%
TCGACCAGAAAAATAAAGCT+TGG - chr5.3:7766641-7766660 None:intergenic 35.0%
TCTTGTTCATTGGTGAGATT+GGG - chr5.3:7768208-7768227 None:intergenic 35.0%
TGGCATCATCATCAATTTGA+AGG - chr5.3:7768672-7768691 None:intergenic 35.0%
TGGGAAAATGGGTAGAAATT+AGG - chr5.3:7768189-7768208 None:intergenic 35.0%
TGTGATTACCTAAAAGACCA+AGG - chr5.3:7768832-7768851 None:intergenic 35.0%
TTGTAAGAGCTCATTGATAG+TGG - chr5.3:7768112-7768131 None:intergenic 35.0%
! AAAACGTGACACGATTTTGA+CGG - chr5.3:7768415-7768434 None:intergenic 35.0%
! AAAGTGTGAGAAAGCTTTGA+AGG - chr5.3:7769864-7769883 None:intergenic 35.0%
! AATTGGTTTAGTGAGTACCA+TGG - chr5.3:7769972-7769991 None:intergenic 35.0%
! ATGAGTAGAGTTGTTGCTTA+AGG + chr5.3:7769648-7769667 MS.gene21454:intron 35.0%
! ATTGGTTTAGTGAGTACCAT+GGG - chr5.3:7769971-7769990 None:intergenic 35.0%
! CAAAGATTTTCTTCCAGCTT+TGG + chr5.3:7767045-7767064 MS.gene21454:CDS 35.0%
! CCACACATCATAGTTTGTAT+TGG - chr5.3:7767884-7767903 None:intergenic 35.0%
! CTCATCTTGATGATCAAACA+AGG + chr5.3:7766861-7766880 MS.gene21454:CDS 35.0%
! CTTTTCCCTTCGTTTTCTTT+CGG - chr5.3:7767170-7767189 None:intergenic 35.0%
! GTGTTCTTTGCAGATTTTGA+AGG - chr5.3:7768374-7768393 None:intergenic 35.0%
! TCATTGAGTGTCTTGTTCAT+TGG - chr5.3:7768218-7768237 None:intergenic 35.0%
! TGATGATTTGGAGAACATTG+AGG - chr5.3:7769570-7769589 None:intergenic 35.0%
! TGCTTTAAGTGTCACAAGTT+TGG - chr5.3:7769281-7769300 None:intergenic 35.0%
! TTACACCTTTTCTCGACTTT+AGG - chr5.3:7767019-7767038 None:intergenic 35.0%
!! AAGTGTGAGAAAGCTTTGAA+GGG - chr5.3:7769863-7769882 None:intergenic 35.0%
!! CTCGACTTTAGGTTTTACAT+CGG - chr5.3:7767008-7767027 None:intergenic 35.0%
!! GGTATTGATTCTTTGTAGAG+CGG - chr5.3:7769134-7769153 None:intergenic 35.0%
!!! GATGTTTTGATCTTCTTGGT+TGG - chr5.3:7766887-7766906 None:intergenic 35.0%
AACTATGATGTGTGGAGCAA+AGG + chr5.3:7767889-7767908 MS.gene21454:intron 40.0%
AAGAGAGAGAACTTCAAGAG+AGG - chr5.3:7768343-7768362 None:intergenic 40.0%
AATATCCCACTTTGAACCCA+TGG + chr5.3:7769952-7769971 MS.gene21454:intron 40.0%
AATGGCCGAAAGAAAACGAA+GGG + chr5.3:7767162-7767181 MS.gene21454:CDS 40.0%
ACAAGTTTGGTCACTTCAAG+AGG - chr5.3:7769268-7769287 None:intergenic 40.0%
ACAGCACCTAGATCTAATCT+AGG + chr5.3:7767958-7767977 MS.gene21454:intron 40.0%
ACTCTACTCATTCAAGATGG+TGG - chr5.3:7769639-7769658 None:intergenic 40.0%
AGATCTCTTCACTTGAACTG+TGG - chr5.3:7770949-7770968 None:intergenic 40.0%
AGTGTTTCAAGAGGAAATGG+TGG - chr5.3:7769356-7769375 None:intergenic 40.0%
ATAACCAAGTGAATCAGACC+AGG + chr5.3:7767113-7767132 MS.gene21454:CDS 40.0%
ATACTCGTGATCAACCTTTG+AGG - chr5.3:7769054-7769073 None:intergenic 40.0%
ATAGAGCATGGTATCCTTGA+AGG + chr5.3:7769481-7769500 MS.gene21454:intron 40.0%
ATCATACATTCTTCAACCCC+CGG + chr5.3:7768860-7768879 MS.gene21454:intron 40.0%
ATGGACAAAGCTTCTGTGTT+GGG + chr5.3:7770840-7770859 MS.gene21454:CDS 40.0%
CAAAAGATGTTCACCCAGTT+CGG + chr5.3:7768044-7768063 MS.gene21454:intron 40.0%
CAAGTTTGGTCACTTCAAGA+GGG - chr5.3:7769267-7769286 None:intergenic 40.0%
CATTGGTGAGATTGGGAAAA+TGG - chr5.3:7768201-7768220 None:intergenic 40.0%
CTGAAAGAGCGATGAAACTT+CGG - chr5.3:7767198-7767217 None:intergenic 40.0%
CTTACTTCGATTTCAGGAAG+TGG - chr5.3:7771026-7771045 None:intergenic 40.0%
CTTCTTTAACCAATACCCGA+TGG + chr5.3:7766751-7766770 MS.gene21454:CDS 40.0%
GAATTCTTCATGAGTACGGA+AGG - chr5.3:7768890-7768909 None:intergenic 40.0%
GAGGTGATGAATAGGAAGAA+GGG - chr5.3:7766916-7766935 None:intergenic 40.0%
GAGTCCGAATTCACAACAAT+TGG - chr5.3:7767852-7767871 None:intergenic 40.0%
GATTAGAGTTCTCTTGGGTT+GGG - chr5.3:7768274-7768293 None:intergenic 40.0%
GGAAAAGAAAAGGAGATTGG+TGG - chr5.3:7768708-7768727 None:intergenic 40.0%
GGGTTGAAGAATGTATGATG+TGG - chr5.3:7768859-7768878 None:intergenic 40.0%
TAACCCAAAGTCGTTACTTC+CGG + chr5.3:7769919-7769938 MS.gene21454:intron 40.0%
TAATGGCCGAAAGAAAACGA+AGG + chr5.3:7767161-7767180 MS.gene21454:CDS 40.0%
TCAAGCTCGAGAACATGTAA+TGG + chr5.3:7767144-7767163 MS.gene21454:CDS 40.0%
TCATCAATTTGAAGGCAAGG+TGG - chr5.3:7768664-7768683 None:intergenic 40.0%
TGAAAGAGCGATGAAACTTC+GGG - chr5.3:7767197-7767216 None:intergenic 40.0%
TGAGGTGATGAATAGGAAGA+AGG - chr5.3:7766917-7766936 None:intergenic 40.0%
TGATTAGAGTTCTCTTGGGT+TGG - chr5.3:7768275-7768294 None:intergenic 40.0%
TGGGATATTGAGAAGTTCAC+CGG - chr5.3:7769941-7769960 None:intergenic 40.0%
TTAAACACTCAACATCAGCC+TGG - chr5.3:7769093-7769112 None:intergenic 40.0%
TTCAAGGATACCATGCTCTA+TGG - chr5.3:7769482-7769501 None:intergenic 40.0%
TTGCCTATGAGCCAAAGATT+TGG + chr5.3:7769673-7769692 MS.gene21454:intron 40.0%
! AAAAGGAGATTGGTGGTTGA+TGG - chr5.3:7768701-7768720 None:intergenic 40.0%
! AACTGGGAAACAATTTGGTG+TGG - chr5.3:7766837-7766856 None:intergenic 40.0%
! AGTAGTACCTTTTTGCCCTT+TGG + chr5.3:7771149-7771168 MS.gene21454:CDS 40.0%
! ATTGATTCTTTGTAGAGCGG+TGG - chr5.3:7769131-7769150 None:intergenic 40.0%
! CAATGATTTTCACTCACCCA+AGG + chr5.3:7768232-7768251 MS.gene21454:intron 40.0%
! CTCCCTTTATCTTTTGCTTG+TGG - chr5.3:7768006-7768025 None:intergenic 40.0%
! GAAGTAACGACTTTGGGTTA+TGG - chr5.3:7769919-7769938 None:intergenic 40.0%
! GGAAAACGTGACACGATTTT+CGG - chr5.3:7768417-7768436 None:intergenic 40.0%
! GTCTTGTTCATTGGTGAGAT+TGG - chr5.3:7768209-7768228 None:intergenic 40.0%
! GTTGTTTCCAAAGGGCAAAA+AGG - chr5.3:7771159-7771178 None:intergenic 40.0%
! TAACGACTTTGGGTTATGGA+AGG - chr5.3:7769915-7769934 None:intergenic 40.0%
! TACTTTTGAACAGGGAATGG+AGG + chr5.3:7766721-7766740 MS.gene21454:intron 40.0%
! TCCAATCGTGACACGATTTT+GGG - chr5.3:7768532-7768551 None:intergenic 40.0%
! TGACCAAATCTTTGGCTCAT+AGG - chr5.3:7769679-7769698 None:intergenic 40.0%
! TTCAGGAAGTGGTTGGTTAT+TGG - chr5.3:7771015-7771034 None:intergenic 40.0%
!! ACTTGGTGTAGTTGAATGCA+AGG - chr5.3:7768729-7768748 None:intergenic 40.0%
!! AGAAGCAATTGGTGTTGAAC+TGG - chr5.3:7766960-7766979 None:intergenic 40.0%
!! AGAGCTCATTGATAGTGGAT+TGG - chr5.3:7768107-7768126 None:intergenic 40.0%
!! AGGGCAAAAAGGTACTACTT+TGG - chr5.3:7771148-7771167 None:intergenic 40.0%
!! TTGGTGGTTGATGGTTAAAG+TGG - chr5.3:7768692-7768711 None:intergenic 40.0%
!!! GCAAGTTTTGAGGATAAGGT+TGG - chr5.3:7768480-7768499 None:intergenic 40.0%
AAGCTCAAAGAGCGGTAACA+AGG - chr5.3:7769315-7769334 None:intergenic 45.0%
AAGGTGATCTTCAAGGAAGC+GGG - chr5.3:7768797-7768816 None:intergenic 45.0%
ACAAGTTCAGGCACATAGGT+GGG - chr5.3:7766498-7766517 None:intergenic 45.0%
ACCATGCTCTATGGCAAAGA+AGG - chr5.3:7769473-7769492 None:intergenic 45.0%
ACCTTGAAACTCCACCTCAA+AGG + chr5.3:7769037-7769056 MS.gene21454:intron 45.0%
AGAGAAAGCTCAACTTGAGG+TGG - chr5.3:7768980-7768999 None:intergenic 45.0%
AGAGCGGATGAAAACAGTGA+AGG - chr5.3:7769383-7769402 None:intergenic 45.0%
ATGGAAGGTGAAGATGCAAG+CGG - chr5.3:7769900-7769919 None:intergenic 45.0%
CAACTAGAGCATAACACCCA+AGG + chr5.3:7768919-7768938 MS.gene21454:intron 45.0%
CAAGAGAATCCATCGGGTAT+TGG - chr5.3:7766763-7766782 None:intergenic 45.0%
CAAGGTGATCTTCAAGGAAG+CGG - chr5.3:7768798-7768817 None:intergenic 45.0%
CACCAAACGTGTCACGATTT+GGG - chr5.3:7768438-7768457 None:intergenic 45.0%
CACCTTGGAAGAAGTTCAAG+CGG - chr5.3:7769444-7769463 None:intergenic 45.0%
CATTGTTCCTGGCCTCAAAA+AGG + chr5.3:7767219-7767238 MS.gene21454:CDS 45.0%
CCTAAAAGACCAAGGGTGAT+TGG - chr5.3:7768824-7768843 None:intergenic 45.0%
CTCCGTTAATTGCTCCATCA+CGG + chr5.3:7769604-7769623 MS.gene21454:intron 45.0%
CTTCGATTTCAGGAAGTGGT+TGG - chr5.3:7771022-7771041 None:intergenic 45.0%
GAACCTTGAGAAACCAAAGC+TGG - chr5.3:7767061-7767080 None:intergenic 45.0%
GAAGGCCTTAGTGTTTCAAG+AGG - chr5.3:7769365-7769384 None:intergenic 45.0%
GAGATGCAAGAGAATCCATC+GGG - chr5.3:7766769-7766788 None:intergenic 45.0%
GAGTACCATGGGTTCAAAGT+GGG - chr5.3:7769960-7769979 None:intergenic 45.0%
GATGGACAAAGCTTCTGTGT+TGG + chr5.3:7770839-7770858 MS.gene21454:intron 45.0%
GCATAGTGTGTGTACGCATT+TGG - chr5.3:7769013-7769032 None:intergenic 45.0%
GCTTACAAGTTCAGGCACAT+AGG - chr5.3:7766502-7766521 None:intergenic 45.0%
GGAGATGCAAGAGAATCCAT+CGG - chr5.3:7766770-7766789 None:intergenic 45.0%
GGCGCCAATTGTTGTGAATT+CGG + chr5.3:7770012-7770031 MS.gene21454:intron 45.0%
GGTAGAGAAAGCTCAACTTG+AGG - chr5.3:7768983-7769002 None:intergenic 45.0%
GTGTACGCATTTGGAAGTTG+AGG - chr5.3:7769004-7769023 None:intergenic 45.0%
GTTTCAAGAGGAAATGGTGG+AGG - chr5.3:7769353-7769372 None:intergenic 45.0%
TACAAGTTCAGGCACATAGG+TGG - chr5.3:7766499-7766518 None:intergenic 45.0%
TCACCGGAAGTAACGACTTT+GGG - chr5.3:7769925-7769944 None:intergenic 45.0%
TCACTTCAAGAGGGATTGTC+CGG - chr5.3:7769258-7769277 None:intergenic 45.0%
TCCCAAAATCGTGTCACGAT+TGG + chr5.3:7768528-7768547 MS.gene21454:intron 45.0%
TGAGTACCATGGGTTCAAAG+TGG - chr5.3:7769961-7769980 None:intergenic 45.0%
TGGATGCAAGGTGATCTTCA+AGG - chr5.3:7768804-7768823 None:intergenic 45.0%
TGTAGACTTGTGGAGCTACT+TGG - chr5.3:7768746-7768765 None:intergenic 45.0%
TGTTCCTGGTCTGATTCACT+TGG - chr5.3:7767120-7767139 None:intergenic 45.0%
TTCACCGGAAGTAACGACTT+TGG - chr5.3:7769926-7769945 None:intergenic 45.0%
TTCCATAGTCGTACCATTCC+CGG + chr5.3:7768943-7768962 MS.gene21454:intron 45.0%
TTCCCAAATCGTGACACGTT+TGG + chr5.3:7768433-7768452 MS.gene21454:intron 45.0%
! CGAACTGGGTGAACATCTTT+TGG - chr5.3:7768046-7768065 None:intergenic 45.0%
! CTTCCAGCTTTGGTTTCTCA+AGG + chr5.3:7767055-7767074 MS.gene21454:CDS 45.0%
! GACCGTGATGGAGCAATTAA+CGG - chr5.3:7769609-7769628 None:intergenic 45.0%
! GATAAGGTTGGTCGTACCTT+GGG - chr5.3:7768468-7768487 None:intergenic 45.0%
! GTCCAATCGTGACACGATTT+TGG - chr5.3:7768533-7768552 None:intergenic 45.0%
!! ACCTTTGAGGTGGAGTTTCA+AGG - chr5.3:7769041-7769060 None:intergenic 45.0%
!! AGGAGGTAACTTTAGGGTTG+AGG - chr5.3:7768303-7768322 None:intergenic 45.0%
!! CCAATCACCCTTGGTCTTTT+AGG + chr5.3:7768821-7768840 MS.gene21454:intron 45.0%
!! CCTCGGAGACAAAGTTTTGA+GGG - chr5.3:7769759-7769778 None:intergenic 45.0%
!! GAGAAAGCTTTGAAGGGTGA+AGG - chr5.3:7769857-7769876 None:intergenic 45.0%
!! GGAGGTAACTTTAGGGTTGA+GGG - chr5.3:7768302-7768321 None:intergenic 45.0%
!! TGCTTTGGTGGTGAGTTGTT+GGG - chr5.3:7769183-7769202 None:intergenic 45.0%
!!! CTGGGCAAGTTTTGAGGATA+AGG - chr5.3:7768484-7768503 None:intergenic 45.0%
!!! CTTTTTGAGGCCAGGAACAA+TGG - chr5.3:7767221-7767240 None:intergenic 45.0%
!!! GATCATACCTTTTTGAGGCC+AGG - chr5.3:7767229-7767248 None:intergenic 45.0%
AACCGAGGAAGCTCAAAGAG+CGG - chr5.3:7769323-7769342 None:intergenic 50.0%
AAGTTCAGGCACATAGGTGG+GGG - chr5.3:7766496-7766515 None:intergenic 50.0%
ACAAGCACGTTTGCAGACAC+TGG + chr5.3:7770890-7770909 MS.gene21454:CDS 50.0%
ACCAAGGGTGATTGGATGCA+AGG - chr5.3:7768816-7768835 None:intergenic 50.0%
ACCTTGCATCCAATCACCCT+TGG + chr5.3:7768812-7768831 MS.gene21454:intron 50.0%
AGACGTTCCGTGGTTGAAGA+GGG - chr5.3:7768774-7768793 None:intergenic 50.0%
AGCCGCTTGAACTTCTTCCA+AGG + chr5.3:7769439-7769458 MS.gene21454:intron 50.0%
AGCTCAACTTGAGGTGGAGT+TGG - chr5.3:7768974-7768993 None:intergenic 50.0%
ATCAATCTCTCCCCCAGAGT+AGG - chr5.3:7768080-7768099 None:intergenic 50.0%
ATTATTCACACCGCCTCTCC+AGG + chr5.3:7769072-7769091 MS.gene21454:intron 50.0%
CAAGGAGTTGACCAAGTCCA+AGG - chr5.3:7769411-7769430 None:intergenic 50.0%
CAAGTCCAAGGACTTGAGAG+CGG - chr5.3:7769399-7769418 None:intergenic 50.0%
CAAGTTCAGGCACATAGGTG+GGG - chr5.3:7766497-7766516 None:intergenic 50.0%
CAATTCACTCCTATGCCCCA+CGG + chr5.3:7769987-7770006 MS.gene21454:intron 50.0%
CACCAAACCCTCTTCAACCA+CGG + chr5.3:7768764-7768783 MS.gene21454:intron 50.0%
CACCCTGCAAAACATGCTCA+CGG + chr5.3:7768552-7768571 MS.gene21454:intron 50.0%
CCCTCAAAACTTTGTCTCCG+AGG + chr5.3:7769756-7769775 MS.gene21454:intron 50.0%
GAAGGTGAGGTTTCTCACCT+TGG - chr5.3:7769155-7769174 None:intergenic 50.0%
GAGGTGGAGTTTCAAGGTGA+AGG - chr5.3:7769035-7769054 None:intergenic 50.0%
GCACCAAACGTGTCACGATT+TGG - chr5.3:7768439-7768458 None:intergenic 50.0%
GCCTTCTTTGCCATAGAGCA+TGG + chr5.3:7769469-7769488 MS.gene21454:intron 50.0%
GCTCTTTCAGCCATTGTTCC+TGG + chr5.3:7767208-7767227 MS.gene21454:CDS 50.0%
GGTACGACTATGGAAGCCTT+GGG - chr5.3:7768938-7768957 None:intergenic 50.0%
GGTCCAACTTGACCTACTCT+GGG + chr5.3:7768065-7768084 MS.gene21454:intron 50.0%
GTCCAACTTGACCTACTCTG+GGG + chr5.3:7768066-7768085 MS.gene21454:intron 50.0%
GTGAGTTGTTGGGAGGATGA+AGG - chr5.3:7769173-7769192 None:intergenic 50.0%
TACCGCTCTTTGAGCTTCCT+CGG + chr5.3:7769318-7769337 MS.gene21454:intron 50.0%
TCCAACTTGACCTACTCTGG+GGG + chr5.3:7768067-7768086 MS.gene21454:intron 50.0%
TGGTACGACTATGGAAGCCT+TGG - chr5.3:7768939-7768958 None:intergenic 50.0%
TTCATCCGCTCTCAAGTCCT+TGG + chr5.3:7769391-7769410 MS.gene21454:intron 50.0%
TTCCGTGGTTGAAGAGGGTT+TGG - chr5.3:7768769-7768788 None:intergenic 50.0%
TTGTTGGGAGGATGAAGGTG+AGG - chr5.3:7769168-7769187 None:intergenic 50.0%
! AGAGGAAATGGTGGAGGTAG+AGG - chr5.3:7769347-7769366 None:intergenic 50.0%
! AGTGCCATTGTCTTGTGCCT+CGG - chr5.3:7769776-7769795 None:intergenic 50.0%
! AGTTGTGTCCGAGGAGTATG+AGG - chr5.3:7769213-7769232 None:intergenic 50.0%
! CTCGTGATCAACCTTTGAGG+TGG - chr5.3:7769051-7769070 None:intergenic 50.0%
! CTTGGACTTGGTCAACTCCT+TGG + chr5.3:7769409-7769428 MS.gene21454:intron 50.0%
! GCCTCGGAGACAAAGTTTTG+AGG - chr5.3:7769760-7769779 None:intergenic 50.0%
! GGATAAGGTTGGTCGTACCT+TGG - chr5.3:7768469-7768488 None:intergenic 50.0%
! TAATTGGCCAAGCACCGTAG+CGG - chr5.3:7771105-7771124 None:intergenic 50.0%
! TGCCGTGAGCATGTTTTGCA+GGG - chr5.3:7768557-7768576 None:intergenic 50.0%
!! AGGTCAAGTTGGACCGAACT+GGG - chr5.3:7768060-7768079 None:intergenic 50.0%
!! ATGAGTACGGAAGGCATTCC+GGG - chr5.3:7768881-7768900 None:intergenic 50.0%
!! CAAAGAAGGCACTGTCACCT+TGG - chr5.3:7769459-7769478 None:intergenic 50.0%
!! CATGAGTACGGAAGGCATTC+CGG - chr5.3:7768882-7768901 None:intergenic 50.0%
!! GACACGATTTTCGGCTTGCT+GGG - chr5.3:7768502-7768521 None:intergenic 50.0%
!! GAGGGTTTGGTGTAGACTTG+TGG - chr5.3:7768756-7768775 None:intergenic 50.0%
!! GTGCTTTGGTGGTGAGTTGT+TGG - chr5.3:7769184-7769203 None:intergenic 50.0%
!! TAGGTCAAGTTGGACCGAAC+TGG - chr5.3:7768061-7768080 None:intergenic 50.0%
!! TCAAGCGGCTTTGAGAACCA+AGG - chr5.3:7769429-7769448 None:intergenic 50.0%
!! TGACACGATTTTCGGCTTGC+TGG - chr5.3:7768503-7768522 None:intergenic 50.0%
!! TTTGGTGGTGAGTTGTTGGG+AGG - chr5.3:7769180-7769199 None:intergenic 50.0%
!!! AGTTTTGAGGGATGTCGCGA+AGG - chr5.3:7769747-7769766 None:intergenic 50.0%
ACAAGCGGAGAAGACCGAGA+TGG - chr5.3:7769813-7769832 None:intergenic 55.0%
ACCCGCATCCTCATACTCCT+CGG + chr5.3:7769202-7769221 MS.gene21454:intron 55.0%
ACCGGTCACCATGACACAAG+CGG - chr5.3:7769828-7769847 None:intergenic 55.0%
AGCACGTTTGCAGACACTGG+AGG + chr5.3:7770893-7770912 MS.gene21454:CDS 55.0%
CACCGGGAATGGTACGACTA+TGG - chr5.3:7768948-7768967 None:intergenic 55.0%
CACTCAACATCAGCCTGGAG+AGG - chr5.3:7769088-7769107 None:intergenic 55.0%
CGCTCTCAAGTCCTTGGACT+TGG + chr5.3:7769397-7769416 MS.gene21454:intron 55.0%
CGGTCCAACTTGACCTACTC+TGG + chr5.3:7768064-7768083 MS.gene21454:intron 55.0%
CGTGGGGCATAGGAGTGAAT+TGG - chr5.3:7769989-7770008 None:intergenic 55.0%
CTTCAAGAGGGATTGTCCGG+AGG - chr5.3:7769255-7769274 None:intergenic 55.0%
GAGACGTTCCGTGGTTGAAG+AGG - chr5.3:7768775-7768794 None:intergenic 55.0%
GCAAAACATGCTCACGGCAC+AGG + chr5.3:7768558-7768577 MS.gene21454:intron 55.0%
GCGGAGTTCTCATTGTCCTC+CGG + chr5.3:7769236-7769255 MS.gene21454:intron 55.0%
GGTCTTCTCCGCTTGTGTCA+TGG + chr5.3:7769817-7769836 MS.gene21454:intron 55.0%
GGTGGAGTCAAAGACCGTGA+TGG - chr5.3:7769621-7769640 None:intergenic 55.0%
GTATGAGGATGCGGGTGCTT+TGG - chr5.3:7769198-7769217 None:intergenic 55.0%
GTCTCCGAGGCACAAGACAA+TGG + chr5.3:7769769-7769788 MS.gene21454:intron 55.0%
TCAACATCAGCCTGGAGAGG+CGG - chr5.3:7769085-7769104 None:intergenic 55.0%
TCCCCCAGAGTAGGTCAAGT+TGG - chr5.3:7768071-7768090 None:intergenic 55.0%
TCCGCTTGTGTCATGGTGAC+CGG + chr5.3:7769824-7769843 MS.gene21454:intron 55.0%
TCGAGCTTGAGCAGTGTTCC+TGG - chr5.3:7767134-7767153 None:intergenic 55.0%
TTTGTAGAGCGGTGGTCGTC+TGG - chr5.3:7769123-7769142 None:intergenic 55.0%
! GAAGGGTGAAGGTGCGTTAC+CGG - chr5.3:7769846-7769865 None:intergenic 55.0%
! GTCCGAGGAGTATGAGGATG+CGG - chr5.3:7769207-7769226 None:intergenic 55.0%
! GTGCCGTGAGCATGTTTTGC+AGG - chr5.3:7768558-7768577 None:intergenic 55.0%
! TCCGAGGAGTATGAGGATGC+GGG - chr5.3:7769206-7769225 None:intergenic 55.0%
!! CCTAGCCTTGTCCACCATCT+CGG + chr5.3:7769796-7769815 MS.gene21454:intron 55.0%
!! GAAGACCGAGATGGTGGACA+AGG - chr5.3:7769804-7769823 None:intergenic 55.0%
!! GGCGTCGATGTGGTCAAAGT+TGG - chr5.3:7769714-7769733 None:intergenic 55.0%
!! TGAGGTGGAGTTGGTGACAC+CGG - chr5.3:7768965-7768984 None:intergenic 55.0%
!! TGAGTACGGAAGGCATTCCG+GGG - chr5.3:7768880-7768899 None:intergenic 55.0%
!!! GGCTTGCTGGGCAAGTTTTG+AGG - chr5.3:7768490-7768509 None:intergenic 55.0%
AACAATTGGCGCCCACCGTG+GGG - chr5.3:7770005-7770024 None:intergenic 60.0%
ACAACAATTGGCGCCCACCG+TGG - chr5.3:7770007-7770026 None:intergenic 60.0%
AGCGGAGAAGACCGAGATGG+TGG - chr5.3:7769810-7769829 None:intergenic 60.0%
CAACAATTGGCGCCCACCGT+GGG - chr5.3:7770006-7770025 None:intergenic 60.0%
CTCCTCGGACACAACTTGCG+CGG + chr5.3:7769217-7769236 MS.gene21454:intron 60.0%
CTTTGACCACATCGACGCCG+CGG + chr5.3:7769715-7769734 MS.gene21454:intron 60.0%
GGTGGAGGTAGAGGTAACCG+AGG - chr5.3:7769338-7769357 None:intergenic 60.0%
TCACTCCTATGCCCCACGGT+GGG + chr5.3:7769991-7770010 MS.gene21454:intron 60.0%
TGAGGATGCGGGTGCTTTGG+TGG - chr5.3:7769195-7769214 None:intergenic 60.0%
TGTCGCGAAGGAACCTACCG+CGG - chr5.3:7769735-7769754 None:intergenic 60.0%
TTCACTCCTATGCCCCACGG+TGG + chr5.3:7769990-7770009 MS.gene21454:intron 60.0%
! ACACAGTGGACGTGCCGCTA+CGG + chr5.3:7771088-7771107 MS.gene21454:CDS 60.0%
!! CCGAGATGGTGGACAAGGCT+AGG - chr5.3:7769799-7769818 None:intergenic 60.0%
!! CGTTTGGTGCGTACGACCCA+AGG + chr5.3:7768449-7768468 MS.gene21454:intron 60.0%
!! GAGGTGGAGTTGGTGACACC+GGG - chr5.3:7768964-7768983 None:intergenic 60.0%
!! GAGTACGGAAGGCATTCCGG+GGG - chr5.3:7768879-7768898 None:intergenic 60.0%
!! GGAGTTGGTGACACCGGGAA+TGG - chr5.3:7768959-7768978 None:intergenic 60.0%
AGGAAGCGGGAGACGTTCCG+TGG - chr5.3:7768784-7768803 None:intergenic 65.0%
CTCCGCGCAAGTTGTGTCCG+AGG - chr5.3:7769222-7769241 None:intergenic 65.0%
!! AACCTACCGCGGCGTCGATG+TGG - chr5.3:7769724-7769743 None:intergenic 65.0%
GACCACATCGACGCCGCGGT+AGG + chr5.3:7769719-7769738 MS.gene21454:intron 70.0%
! GGACGTGCCGCTACGGTGCT+TGG + chr5.3:7771095-7771114 MS.gene21454:CDS 70.0%
TGGCGCCCACCGTGGGGCAT+AGG - chr5.3:7769999-7770018 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr5.3 gene 7766426 7771187 7766426 ID=MS.gene21454
chr5.3 mRNA 7766426 7771187 7766426 ID=MS.gene21454.t1;Parent=MS.gene21454
chr5.3 exon 7766426 7766515 7766426 ID=MS.gene21454.t1.exon1;Parent=MS.gene21454.t1
chr5.3 CDS 7766426 7766515 7766426 ID=cds.MS.gene21454.t1;Parent=MS.gene21454.t1
chr5.3 exon 7766734 7767240 7766734 ID=MS.gene21454.t1.exon2;Parent=MS.gene21454.t1
chr5.3 CDS 7766734 7767240 7766734 ID=cds.MS.gene21454.t1;Parent=MS.gene21454.t1
chr5.3 exon 7770840 7771187 7770840 ID=MS.gene21454.t1.exon3;Parent=MS.gene21454.t1
chr5.3 CDS 7770840 7771187 7770840 ID=cds.MS.gene21454.t1;Parent=MS.gene21454.t1
Gene Sequence

>MS.gene21454

ATGTCCCATACCACATCTAATCAAATCGAAGTTTTAGGAAAGAAACTGAAGATGATGCAAATTATGTCCCCCACCTATGTGCCTGAACTTGTAAGCATACTACTATCATCACCTATCTTAAAATTCATAAACTTTAAGTAATCACAATTATAGCTGAACTTGAAGTATTGAAGTGATTCATCTTAAAATCTTAGCTCTCGAATAATTTTTGACCAAGCTTTATTTTTCTGGTCGAACTTTGGATTTGAAGAAATGAAGTTGCATGTGTATAAAAGAAGAAAGCTTACTCTTTAATTACTTTTGAACAGGGAATGGAGGATCTCAACTTCTTTAACCAATACCCGATGGATTCTCTTGCATCTCCAATATTATTCGACAACTTTGGCTTTCACTTTGATGACAACGAAACCACACCAAATTGTTTCCCAGTTGAAACTCATCTTGATGATCAAACAAGGCCAACCAAGAAGATCAAAACATCGATAAACCCTTCTTCCTATTCATCACCTCAATTCATTTCTTTTGAACACTCCAGTTCAACACCAATTGCTTCTAAGCAATTTTATAACCTTGATTATTCCGATGTAAAACCTAAAGTCGAGAAAAGGTGTAATGATAACAAAGATTTTCTTCCAGCTTTGGTTTCTCAAGGTTCTTATGAAGATCAAAAAATATTTTCAAATTATGATAACCAAGTGAATCAGACCAGGAACACTGCTCAAGCTCGAGAACATGTAATGGCCGAAAGAAAACGAAGGGAAAAGCTTACCCGAAGTTTCATCGCTCTTTCAGCCATTGTTCCTGGCCTCAAAAAGGTATGATCTTATCTCCAACTCACAAACATGTTATAATGTAACTCCATTCAAACCATTTCTATATCAACATACTACTAGAAAAAGAAACATTAATGATCCATATTAAAGGCTGAAATGGTGTGATCTCTCTAATTCTCTAGTCCCTAGCAATATTAGTGACCATTTCATGTTTTTCGTCAATAATTTATTTTTCTTTTGGAATGAAGACTTGTTTTAATTTCTGAGAAAAACAGTATAACCTAATCTGATCATAAGAAAATAAAATCAATTTTTAGTCTTCGAGAAAAAAATAGGACAGCTTTTACTACTCAGACACAAAGAGTAGACATCAAAAAGTTGGGGATTAAATTGTTCTAGTTTCTTTTCTCAGAAACTAAATTGTTTTTATTTCATTTTCTAGGATCAAATCAGGTATCTAATTTTTTTATAATTTAAATTTTATAATTGTGAGTAATGTTCTACTTACACTAGGTGCAACTAATTTCAGTAGTACTAAATTACTGATTAGTGAATAAACACACATGCAAGCTTAACCTAATTAAGTTGAACTTACCAATTGCAATATTTATATTGTACTAGATTTGAATGAATAAATTAATGTATTCAATATTATTGTTGTGAATTCGGACTCAAAATCACACCAATACAAACTATGATGTGTGGAGCAAAGGAAAGTAGTAACCAATATCAAAGTAAACACAAGCAATAACAACAATAACAGCACCTAGATCTAATCTAGGAATCAAAGTGAAAAGCACAAAACCACAAGCAAAAGATAAAGGGAGAAGAGAAACAAAACACACCAAAAGATGTTCACCCAGTTCGGTCCAACTTGACCTACTCTGGGGGAGAGATTGATCTCTCCAATCCACTATCAATGAGCTCTTACAAAGAGATACAAATGGGTTACAAGAAATTAGCTTCAACAAGCTCACAAAGAACAACCCTAATTTCTACCCATTTTCCCAATCTCACCAATGAACAAGACACTCAATGATTTTCACTCACCCAAGGTGTTTACAATGTTTTTCCCAACCCAAGAGAACTCTAATCAAAGACCCTCAACCCTAAAGTTACCTCCTTTGATTTCCCAAGTTTTCCTCTCTTGAAGTTCTCTCTCTTCAAGCTCTCCTTCAAAATCTGCAAAGAACACTTAAATAGTACTCTGCAACCGTCAAAATCGTGTCACGTTTTCCCAAATCGTGACACGTTTGGTGCGTACGACCCAAGGTACGACCAACCTTATCCTCAAAACTTGCCCAGCAAGCCGAAAATCGTGTCACGTTTTCCCAAAATCGTGTCACGATTGGACACCCTGCAAAACATGCTCACGGCACAGGAAAATCGTGACACGCTTGCTAAATCGTGTCACGATTGTGTTTTTTCACAAACTCAATTTGGAAGGCATAAACAACATTCTCCACCTTGCCTTCAAATTGATGATGATGCCACTTTAACCATCAACCACCAATCTCCTTTTCTTTTCCTTGCATTCAACTACACCAAGTAGCTCCACAAGTCTACACCAAACCCTCTTCAACCACGGAACGTCTCCCGCTTCCTTGAAGATCACCTTGCATCCAATCACCCTTGGTCTTTTAGGTAATCACACAAGCCACATCATACATTCTTCAACCCCCGGAATGCCTTCCGTACTCATGAAGAATTCACATGCTCACAACTAGAGCATAACACCCAAGGCTTCCATAGTCGTACCATTCCCGGTGTCACCAACTCCACCTCAAGTTGAGCTTTCTCTACCTCAACTTCCAAATGCGTACACACACTATGCCTTCACCTTGAAACTCCACCTCAAAGGTTGATCACGAGTATTATTCACACCGCCTCTCCAGGCTGATGTTGAGTGTTTAACGTCTCTCCAGACGACCACCGCTCTACAAAGAATCAATACCAAGGTGAGAAACCTCACCTTCATCCTCCCAACAACTCACCACCAAAGCACCCGCATCCTCATACTCCTCGGACACAACTTGCGCGGAGTTCTCATTGTCCTCCGGACAATCCCTCTTGAAGTGACCAAACTTGTGACACTTAAAGCACTTATACTTATCCTTGTTACCGCTCTTTGAGCTTCCTCGGTTACCTCTACCTCCACCATTTCCTCTTGAAACACTAAGGCCTTCACTGTTTTCATCCGCTCTCAAGTCCTTGGACTTGGTCAACTCCTTGGTTCTCAAAGCCGCTTGAACTTCTTCCAAGGTGACAGTGCCTTCTTTGCCATAGAGCATGGTATCCTTGAAGGATTCAAATGATCTCGGTAGAGCACACAACAAGAGTATAGCTTTGTCTTCGTCTTCAAGTTGCACCTCAATGTTCTCCAAATCATCAAGGATTTTGTTGAACTCCGTTAATTGCTCCATCACGGTCTTTGACTCCACCATCTTGAATGAGTAGAGTTGTTGCTTAAGGAATTGCCTATGAGCCAAAGATTTGGTCATATACAATGACTCCAACTTTGACCACATCGACGCCGCGGTAGGTTCCTTCGCGACATCCCTCAAAACTTTGTCTCCGAGGCACAAGACAATGGCACTCCTAGCCTTGTCCACCATCTCGGTCTTCTCCGCTTGTGTCATGGTGACCGGTAACGCACCTTCACCCTTCAAAGCTTTCTCACACTTTTGTTGTATCAACACCGCTTGCATCTTCACCTTCCATAACCCAAAGTCGTTACTTCCGGTGAACTTCTCAATATCCCACTTTGAACCCATGGTACTCACTAAACCAATTCACTCCTATGCCCCACGGTGGGCGCCAATTGTTGTGAATTCGGACTCAAAATCACACCAATACAAACTATGATGTGTGGAGCAAAGGAAAGTAGTAACCAATATCAAAGTAAACACAAGCAATAACAACAATAACAGCACCTAGATCTAATCTAGGAATCAAAGTGAAAAGCACAAAACCACAAGCAAAAGATAAAGGGAGAAGAGAAACAAAACACACCAAAAGATGTTCACCCAGTTCGGTCCAACTTGACCTACTCTGGGGGAGAGATTGATCTCTCCAATCCACTATCAATGAGCTCTTACAAAGAGATACAAATGGGTTACAAGAAATTAGCTTCAACAAGCTCACAAAGAACAACCCTAATTTCTACCCATTTTCCCAATCTCACCAATGAACAAGACACTCAATGATTTTCACTCACCCAAGGTGTTTACAATGTTTTTCCCAACCCAAGAGAACTCTAATCAAAGACCCTCAACCCTAAAGTTACCTCCTTTGATTTCCCAAGTTTTCCTCTCTTGAAGTTCTCTCTCTTCAAGCTCTCCTTCAAAATCTGCAAAGAACACTTAAATAGTACTCTGCAACCGTCAAAATCGTGTCACGTTTTCCCAAATCGTGACACGTTTGGTGCGTACGACCCAAGGTACGACCAACCTTATCCTCAAAACTTGCCCAGCAAGCCGAAAATCGTGTCACGTTTTCCCAAAATCGTGTCACGATTGGACACCCTGCAAAACATGCTCACGGCACAGGAAAATCGTGACACGCTTGCTAAATCGTGTCACGATTGTGTTTTTTCACAAACTCAATTTGGAAGGCATAAACAACAATTATGGTATGTGCAGATGGACAAAGCTTCTGTGTTGGGAGATGCTATCAAGTACATGAAACAACTACAAGCACGTTTGCAGACACTGGAGGAACAAGCTGAAGACAACAAAAAAACTGGATCCACAGTTCAAGTGAAGAGATCTATTATCTTCACTAATGATGACGATGATGATGATGATAGCAACTCCAATAACCAACCACTTCCTGAAATCGAAGTAAGAGTATCAAGCAAAGATGTACTCATCAAGATTCAATGTGACAAACACAGTGGACGTGCCGCTACGGTGCTTGGCCAATTAGAAAACCTTAATCTCACTGTCCAAAGTAGTACCTTTTTGCCCTTTGGAAACAACATTGTTGAT
Protein sequence

>MS.gene21454.t1

MSHTTSNQIEVLGKKLKMMQIMSPTYVPELGMEDLNFFNQYPMDSLASPILFDNFGFHFDDNETTPNCFPVETHLDDQTRPTKKIKTSINPSSYSSPQFISFEHSSSTPIASKQFYNLDYSDVKPKVEKRCNDNKDFLPALVSQGSYEDQKIFSNYDNQVNQTRNTAQAREHVMAERKRREKLTRSFIALSAIVPGLKKMDKASVLGDAIKYMKQLQARLQTLEEQAEDNKKTGSTVQVKRSIIFTNDDDDDDDSNSNNQPLPEIEVRVSSKDVLIKIQCDKHSGRAATVLGQLENLNLTVQSSTFLPFGNNIVD