Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21514.t1 | XP_024640082.1 | 87 | 184 | 13 | 3 | 1 | 184 | 1 | 173 | 2.30E-79 | 305.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21514.t1 | Q84R94 | 42.9 | 163 | 78 | 3 | 17 | 167 | 54 | 213 | 5.4e-21 | 102.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21514.t1 | G7JYL9 | 87.0 | 184 | 13 | 3 | 1 | 184 | 1 | 173 | 2.1e-79 | 304.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene21514.t1 | TF | Tify |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21514.t1 | MTR_5g013530 | 86.957 | 184 | 13 | 3 | 1 | 184 | 1 | 173 | 6.13e-113 | 318 |
MS.gene21514.t1 | MTR_5g013530 | 85.256 | 156 | 12 | 3 | 29 | 184 | 7 | 151 | 1.13e-89 | 259 |
MS.gene21514.t1 | MTR_5g013520 | 82.895 | 152 | 19 | 3 | 30 | 181 | 1 | 145 | 8.89e-87 | 251 |
MS.gene21514.t1 | MTR_5g013515 | 70.345 | 145 | 28 | 5 | 31 | 168 | 1 | 137 | 6.63e-64 | 193 |
MS.gene21514.t1 | MTR_2g042900 | 46.667 | 165 | 44 | 7 | 25 | 163 | 99 | 245 | 2.60e-34 | 122 |
MS.gene21514.t1 | MTR_4g124960 | 32.941 | 170 | 69 | 5 | 5 | 169 | 73 | 202 | 3.17e-19 | 81.3 |
MS.gene21514.t1 | MTR_2g042900 | 36.905 | 168 | 40 | 7 | 25 | 136 | 99 | 256 | 3.20e-19 | 82.4 |
MS.gene21514.t1 | MTR_4g124960 | 33.099 | 142 | 50 | 5 | 5 | 141 | 73 | 174 | 1.05e-14 | 68.9 |
MS.gene21514.t1 | MTR_8g021380 | 30.534 | 131 | 85 | 3 | 19 | 144 | 79 | 208 | 5.19e-14 | 68.2 |
MS.gene21514.t1 | MTR_2g044910 | 29.310 | 116 | 73 | 1 | 40 | 146 | 11 | 126 | 7.68e-13 | 63.5 |
MS.gene21514.t1 | MTR_2g044910 | 29.310 | 116 | 73 | 1 | 40 | 146 | 54 | 169 | 1.49e-12 | 63.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21514.t1 | AT1G19180 | 43.284 | 134 | 70 | 4 | 37 | 166 | 53 | 184 | 1.20e-27 | 102 |
MS.gene21514.t1 | AT1G19180 | 43.284 | 134 | 70 | 4 | 37 | 166 | 119 | 250 | 9.54e-27 | 102 |
MS.gene21514.t1 | AT1G19180 | 43.284 | 134 | 70 | 4 | 37 | 166 | 119 | 250 | 9.54e-27 | 102 |
MS.gene21514.t1 | AT1G74950 | 39.130 | 138 | 72 | 3 | 37 | 164 | 112 | 247 | 1.46e-22 | 91.3 |
MS.gene21514.t1 | AT1G74950 | 40.000 | 110 | 56 | 2 | 37 | 136 | 112 | 221 | 3.15e-17 | 76.6 |
MS.gene21514.t1 | AT5G20900 | 35.664 | 143 | 70 | 5 | 24 | 147 | 28 | 167 | 9.26e-16 | 72.0 |
MS.gene21514.t1 | AT1G72450 | 36.885 | 122 | 65 | 4 | 39 | 152 | 101 | 218 | 1.12e-15 | 73.2 |
MS.gene21514.t1 | AT1G17380 | 35.714 | 126 | 73 | 2 | 33 | 150 | 58 | 183 | 1.20e-15 | 72.8 |
MS.gene21514.t1 | AT1G17380 | 35.714 | 126 | 73 | 2 | 33 | 150 | 87 | 212 | 3.92e-15 | 71.6 |
MS.gene21514.t1 | AT1G70700 | 36.538 | 104 | 62 | 2 | 44 | 144 | 119 | 221 | 1.59e-12 | 64.3 |
MS.gene21514.t1 | AT4G14720 | 33.121 | 157 | 85 | 7 | 40 | 181 | 153 | 304 | 7.18e-11 | 60.1 |
MS.gene21514.t1 | AT1G17380 | 33.929 | 112 | 66 | 2 | 33 | 136 | 87 | 198 | 7.36e-11 | 59.3 |
MS.gene21514.t1 | AT4G14720 | 33.121 | 157 | 85 | 7 | 40 | 181 | 153 | 304 | 7.50e-11 | 60.1 |
Find 36 sgRNAs with CRISPR-Local
Find 89 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCTACAAGAGATTCCTATTT+TGG | 0.046444 | 5.3:+6713791 | MS.gene21514:CDS |
CCATCTATGCCTGTTATTTA+TGG | 0.102905 | 5.3:+6714209 | MS.gene21514:CDS |
ATTCATCAATTGACTTATTT+AGG | 0.185988 | 5.3:-6715248 | None:intergenic |
AGCTTCACTTCATCGGTTCT+TGG | 0.292747 | 5.3:+6714353 | MS.gene21514:CDS |
CCAAAATAGGAATCTCTTGT+AGG | 0.331403 | 5.3:-6713791 | None:intergenic |
TACCTGGAGTTTCCCAAAAT+AGG | 0.395618 | 5.3:-6713804 | None:intergenic |
GGAAAAGTCCATGATGTCTT+TGG | 0.411671 | 5.3:-6714072 | None:intergenic |
ATGTCTTTGGCTTTATCAGC+TGG | 0.417227 | 5.3:-6714059 | None:intergenic |
GCTGGATTACTTGTTTGATA+AGG | 0.423471 | 5.3:-6715219 | None:intergenic |
AGTGAAGCTTTCCTAGTCAT+TGG | 0.425048 | 5.3:-6714339 | None:intergenic |
GACTTATTTAGGAATGCTGC+TGG | 0.431039 | 5.3:-6715237 | None:intergenic |
GTAGTCTTGAAGAGAATTGT+TGG | 0.442893 | 5.3:-6714177 | None:intergenic |
CCATAAATAACAGGCATAGA+TGG | 0.445007 | 5.3:-6714209 | None:intergenic |
CAAATGACAATCTTCTATGA+TGG | 0.453411 | 5.3:+6714011 | MS.gene21514:CDS |
TGAAGTACTAGTAATTCCTT+TGG | 0.455465 | 5.3:-6714096 | None:intergenic |
TTCATCGGTTCTTGGAGAAA+AGG | 0.463618 | 5.3:+6714361 | MS.gene21514:CDS |
GGAAGCTGTTGAAAATTCAT+AGG | 0.469618 | 5.3:-6713759 | None:intergenic |
AGTACTAGTAATTCCTTTGG+TGG | 0.499055 | 5.3:-6714093 | None:intergenic |
ATCCATGTCATGGCTATCCT+TGG | 0.509457 | 5.3:+6715269 | MS.gene21514:CDS |
AATGAAGGCTAATGTTAAGA+AGG | 0.511094 | 5.3:+6713971 | MS.gene21514:CDS |
AGCAAGCATAGTTGTTATTG+TGG | 0.514503 | 5.3:-6714130 | None:intergenic |
CTAGGAAAGCTTCACTTCAT+CGG | 0.529148 | 5.3:+6714346 | MS.gene21514:CDS |
AAATGACAATCTTCTATGAT+GGG | 0.538308 | 5.3:+6714012 | MS.gene21514:CDS |
CTACATTTAGATTTGTGTTG+CGG | 0.547996 | 5.3:-6715303 | None:intergenic |
ATCTCTTGTAGGAAGAGATG+AGG | 0.564072 | 5.3:-6713780 | None:intergenic |
TCTTGGAGAAAAGGAAGGAT+AGG | 0.567398 | 5.3:+6714370 | MS.gene21514:CDS |
GGCTAATGTTAAGAAGGAAG+AGG | 0.580916 | 5.3:+6713977 | MS.gene21514:CDS |
TGATAAAGCCAAAGACATCA+TGG | 0.585378 | 5.3:+6714064 | MS.gene21514:CDS |
TCGGTTCTTGGAGAAAAGGA+AGG | 0.585705 | 5.3:+6714365 | MS.gene21514:CDS |
GTTTCTGCAGAATTGCTGCA+AGG | 0.606526 | 5.3:+6715193 | MS.gene21514:intron |
TTTCTGCAGAATTGCTGCAA+GGG | 0.611240 | 5.3:+6715194 | MS.gene21514:intron |
CAATTGATGAATCCATGTCA+TGG | 0.612586 | 5.3:+6715259 | MS.gene21514:CDS |
TGCCAAGGATAGCCATGACA+TGG | 0.617530 | 5.3:-6715271 | None:intergenic |
GATTTGTGTTGCGGTGAATG+TGG | 0.627153 | 5.3:-6715294 | None:intergenic |
TTGCGGTGAATGTGGTGCCA+AGG | 0.648709 | 5.3:-6715286 | None:intergenic |
ATACAGATTTACCAATGACT+AGG | 0.658525 | 5.3:+6714328 | MS.gene21514:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTATTTATGGTATTTTTTTT+TGG | + | chr5.3:6714222-6714241 | MS.gene21514:intron | 10.0% |
!! | AAAAAAATACCATAAATAAC+AGG | - | chr5.3:6714221-6714240 | None:intergenic | 15.0% |
!!! | TACACTATTATAATCAATTT+TGG | + | chr5.3:6714987-6715006 | MS.gene21514:intron | 15.0% |
!!! | TGATAGATAAATCAATTTTA+AGG | + | chr5.3:6714628-6714647 | MS.gene21514:intron | 15.0% |
!!! | TTTTTGTTTATAATAGTGAT+TGG | + | chr5.3:6714753-6714772 | MS.gene21514:intron | 15.0% |
!! | GATAACCAATTTACTAAAAT+TGG | - | chr5.3:6715083-6715102 | None:intergenic | 20.0% |
!!! | AATTTTAAGGAACCAATTTT+AGG | + | chr5.3:6714641-6714660 | MS.gene21514:intron | 20.0% |
!!! | AGTGTAATTTTGTGTATTTT+AGG | + | chr5.3:6714597-6714616 | MS.gene21514:intron | 20.0% |
!!! | ATTCATCAATTGACTTATTT+AGG | - | chr5.3:6715251-6715270 | None:intergenic | 20.0% |
!!! | TATAGTTTTTTTCTCTACAT+TGG | - | chr5.3:6714867-6714886 | None:intergenic | 20.0% |
! | AAACATCATACTAGTAGAAA+AGG | - | chr5.3:6715139-6715158 | None:intergenic | 25.0% |
! | AAATGACAATCTTCTATGAT+GGG | + | chr5.3:6714012-6714031 | MS.gene21514:CDS | 25.0% |
! | AACATCATACTAGTAGAAAA+GGG | - | chr5.3:6715138-6715157 | None:intergenic | 25.0% |
! | CATACTAGTAGTATATAACA+TGG | + | chr5.3:6713903-6713922 | MS.gene21514:intron | 25.0% |
! | GTTACAAAAATTGATTGAAC+TGG | + | chr5.3:6714496-6714515 | MS.gene21514:intron | 25.0% |
! | TCCTCTCAAAACTATATATA+TGG | + | chr5.3:6715108-6715127 | MS.gene21514:intron | 25.0% |
! | TGGATATATTATGTTTGAGA+GGG | + | chr5.3:6714242-6714261 | MS.gene21514:intron | 25.0% |
! | TTATAGTTTCAATCAGTTTC+TGG | + | chr5.3:6714889-6714908 | MS.gene21514:intron | 25.0% |
! | TTGCGTTTATATAATAGTGA+CGG | - | chr5.3:6714675-6714694 | None:intergenic | 25.0% |
! | TTGGATATATTATGTTTGAG+AGG | + | chr5.3:6714241-6714260 | MS.gene21514:intron | 25.0% |
!! | TTTTCTACTAGTATGATGTT+TGG | + | chr5.3:6715138-6715157 | MS.gene21514:intron | 25.0% |
!! | TTTTCTCTACATTGGATTTT+TGG | - | chr5.3:6714859-6714878 | None:intergenic | 25.0% |
!!! | ATATAGTTTTGAGAGGATAA+CGG | - | chr5.3:6715105-6715124 | None:intergenic | 25.0% |
!!! | GTTTTATTACAGTGTAATGA+AGG | + | chr5.3:6713956-6713975 | MS.gene21514:intron | 25.0% |
AAAAAGAACATGTATGTACC+TGG | - | chr5.3:6713823-6713842 | None:intergenic | 30.0% | |
AACACACTACTTAACAATTG+AGG | - | chr5.3:6714466-6714485 | None:intergenic | 30.0% | |
AAGTAGTGTGTTTGATTCTA+CGG | + | chr5.3:6714474-6714493 | MS.gene21514:intron | 30.0% | |
AATGAAGGCTAATGTTAAGA+AGG | + | chr5.3:6713971-6713990 | MS.gene21514:CDS | 30.0% | |
ATACAGATTTACCAATGACT+AGG | + | chr5.3:6714328-6714347 | MS.gene21514:intron | 30.0% | |
ATATTTGATTGAGAGAGATC+TGG | - | chr5.3:6714404-6714423 | None:intergenic | 30.0% | |
ATCCAAATTCTCTACCTTTA+AGG | - | chr5.3:6714836-6714855 | None:intergenic | 30.0% | |
CAAATGACAATCTTCTATGA+TGG | + | chr5.3:6714011-6714030 | MS.gene21514:CDS | 30.0% | |
CTACATTTAGATTTGTGTTG+CGG | - | chr5.3:6715306-6715325 | None:intergenic | 30.0% | |
GACAAACTTATCAGTCAATA+TGG | - | chr5.3:6715170-6715189 | None:intergenic | 30.0% | |
TGCGTTTATATAATAGTGAC+GGG | - | chr5.3:6714674-6714693 | None:intergenic | 30.0% | |
! | CTACAAGAGATTCCTATTTT+GGG | + | chr5.3:6713792-6713811 | MS.gene21514:CDS | 30.0% |
! | GTGATTTTGCTAAAAGTGAA+TGG | + | chr5.3:6714529-6714548 | MS.gene21514:intron | 30.0% |
! | TGAAGTACTAGTAATTCCTT+TGG | - | chr5.3:6714099-6714118 | None:intergenic | 30.0% |
! | TTTATATAATAGTGACGGGA+GGG | - | chr5.3:6714670-6714689 | None:intergenic | 30.0% |
!! | AGGAGCCAATTTTAGTAAAT+TGG | + | chr5.3:6715075-6715094 | MS.gene21514:intron | 30.0% |
!!! | GCCATATATATAGTTTTGAG+AGG | - | chr5.3:6715112-6715131 | None:intergenic | 30.0% |
!!! | GTCAATAGACTTCACTTTTT+AGG | + | chr5.3:6714436-6714455 | MS.gene21514:intron | 30.0% |
AGATATAGTGACTTTGGTGA+TGG | + | chr5.3:6714556-6714575 | MS.gene21514:intron | 35.0% | |
AGTACTAGTAATTCCTTTGG+TGG | - | chr5.3:6714096-6714115 | None:intergenic | 35.0% | |
CAATTGATGAATCCATGTCA+TGG | + | chr5.3:6715259-6715278 | MS.gene21514:CDS | 35.0% | |
CCAAAATAGGAATCTCTTGT+AGG | - | chr5.3:6713794-6713813 | None:intergenic | 35.0% | |
CCATAAATAACAGGCATAGA+TGG | - | chr5.3:6714212-6714231 | None:intergenic | 35.0% | |
CTACAAAAATAACACAGAGG+TGG | - | chr5.3:6715331-6715350 | None:intergenic | 35.0% | |
GATACCATGAACAAAAGTGA+AGG | + | chr5.3:6715055-6715074 | MS.gene21514:intron | 35.0% | |
GCTGGATTACTTGTTTGATA+AGG | - | chr5.3:6715222-6715241 | None:intergenic | 35.0% | |
GGAAGCTGTTGAAAATTCAT+AGG | - | chr5.3:6713762-6713781 | None:intergenic | 35.0% | |
GGATTGAGATATAGTGACTT+TGG | + | chr5.3:6714550-6714569 | MS.gene21514:intron | 35.0% | |
TGATAAAGCCAAAGACATCA+TGG | + | chr5.3:6714064-6714083 | MS.gene21514:CDS | 35.0% | |
TTAAGGCGAAAAAGTCATCA+TGG | - | chr5.3:6714819-6714838 | None:intergenic | 35.0% | |
! | AGCAAGCATAGTTGTTATTG+TGG | - | chr5.3:6714133-6714152 | None:intergenic | 35.0% |
! | CCATCTATGCCTGTTATTTA+TGG | + | chr5.3:6714209-6714228 | MS.gene21514:CDS | 35.0% |
! | CCTACAAGAGATTCCTATTT+TGG | + | chr5.3:6713791-6713810 | MS.gene21514:CDS | 35.0% |
! | GATATAGTGACTTTGGTGAT+GGG | + | chr5.3:6714557-6714576 | MS.gene21514:intron | 35.0% |
! | GTAGTCTTGAAGAGAATTGT+TGG | - | chr5.3:6714180-6714199 | None:intergenic | 35.0% |
! | GTTTATATAATAGTGACGGG+AGG | - | chr5.3:6714671-6714690 | None:intergenic | 35.0% |
!!! | TGATGACTTTTTCGCCTTAA+AGG | + | chr5.3:6714819-6714838 | MS.gene21514:intron | 35.0% |
AGTGAAGCTTTCCTAGTCAT+TGG | - | chr5.3:6714342-6714361 | None:intergenic | 40.0% | |
ATCTCTTGTAGGAAGAGATG+AGG | - | chr5.3:6713783-6713802 | None:intergenic | 40.0% | |
CGCCTTAAAGGTAGAGAATT+TGG | + | chr5.3:6714831-6714850 | MS.gene21514:intron | 40.0% | |
CTAGGAAAGCTTCACTTCAT+CGG | + | chr5.3:6714346-6714365 | MS.gene21514:CDS | 40.0% | |
GACTTATTTAGGAATGCTGC+TGG | - | chr5.3:6715240-6715259 | None:intergenic | 40.0% | |
GGAAAAGTCCATGATGTCTT+TGG | - | chr5.3:6714075-6714094 | None:intergenic | 40.0% | |
GGCTAATGTTAAGAAGGAAG+AGG | + | chr5.3:6713977-6713996 | MS.gene21514:CDS | 40.0% | |
TACCTGGAGTTTCCCAAAAT+AGG | - | chr5.3:6713807-6713826 | None:intergenic | 40.0% | |
TCTTGGAGAAAAGGAAGGAT+AGG | + | chr5.3:6714370-6714389 | MS.gene21514:CDS | 40.0% | |
TTTCTGCAGAATTGCTGCAA+GGG | + | chr5.3:6715194-6715213 | MS.gene21514:intron | 40.0% | |
! | ATCATGGACTTTTCCACCAA+AGG | + | chr5.3:6714080-6714099 | MS.gene21514:CDS | 40.0% |
!! | AGGGTGTTTGATTTGTGTCA+TGG | + | chr5.3:6714261-6714280 | MS.gene21514:intron | 40.0% |
!! | ATGTCTTTGGCTTTATCAGC+TGG | - | chr5.3:6714062-6714081 | None:intergenic | 40.0% |
!! | TTCATCGGTTCTTGGAGAAA+AGG | + | chr5.3:6714361-6714380 | MS.gene21514:CDS | 40.0% |
!! | TTCCTATTTTGGGAAACTCC+AGG | + | chr5.3:6713802-6713821 | MS.gene21514:CDS | 40.0% |
ATCCATGTCATGGCTATCCT+TGG | + | chr5.3:6715269-6715288 | MS.gene21514:CDS | 45.0% | |
GACATGACTCAGTGTATCCT+CGG | - | chr5.3:6715030-6715049 | None:intergenic | 45.0% | |
GATTTGTGTTGCGGTGAATG+TGG | - | chr5.3:6715297-6715316 | None:intergenic | 45.0% | |
GTTTCTGCAGAATTGCTGCA+AGG | + | chr5.3:6715193-6715212 | MS.gene21514:intron | 45.0% | |
TCGGTTCTTGGAGAAAAGGA+AGG | + | chr5.3:6714365-6714384 | MS.gene21514:CDS | 45.0% | |
TTGATTGAGAGAGATCTGGC+AGG | - | chr5.3:6714400-6714419 | None:intergenic | 45.0% | |
!! | AGCTTCACTTCATCGGTTCT+TGG | + | chr5.3:6714353-6714372 | MS.gene21514:CDS | 45.0% |
!! | GGCTCCTTCACTTTTGTTCA+TGG | - | chr5.3:6715062-6715081 | None:intergenic | 45.0% |
ACGGGAGGGAGTCCTAAAAT+TGG | - | chr5.3:6714656-6714675 | None:intergenic | 50.0% | |
TGCCAAGGATAGCCATGACA+TGG | - | chr5.3:6715274-6715293 | None:intergenic | 50.0% | |
! | TGTATCCTCGGCTCGACTTT+AGG | - | chr5.3:6715018-6715037 | None:intergenic | 50.0% |
CTCATCCTAAAGTCGAGCCG+AGG | + | chr5.3:6715010-6715029 | MS.gene21514:intron | 55.0% | |
! | TTGCGGTGAATGTGGTGCCA+AGG | - | chr5.3:6715289-6715308 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.3 | gene | 6713738 | 6715350 | 6713738 | ID=MS.gene21514 |
chr5.3 | mRNA | 6713738 | 6715350 | 6713738 | ID=MS.gene21514.t1;Parent=MS.gene21514 |
chr5.3 | exon | 6713738 | 6713823 | 6713738 | ID=MS.gene21514.t1.exon1;Parent=MS.gene21514.t1 |
chr5.3 | CDS | 6713738 | 6713823 | 6713738 | ID=cds.MS.gene21514.t1;Parent=MS.gene21514.t1 |
chr5.3 | exon | 6713968 | 6714230 | 6713968 | ID=MS.gene21514.t1.exon2;Parent=MS.gene21514.t1 |
chr5.3 | CDS | 6713968 | 6714230 | 6713968 | ID=cds.MS.gene21514.t1;Parent=MS.gene21514.t1 |
chr5.3 | exon | 6714334 | 6714391 | 6714334 | ID=MS.gene21514.t1.exon3;Parent=MS.gene21514.t1 |
chr5.3 | CDS | 6714334 | 6714391 | 6714334 | ID=cds.MS.gene21514.t1;Parent=MS.gene21514.t1 |
chr5.3 | exon | 6715203 | 6715350 | 6715203 | ID=MS.gene21514.t1.exon4;Parent=MS.gene21514.t1 |
chr5.3 | CDS | 6715203 | 6715350 | 6715203 | ID=cds.MS.gene21514.t1;Parent=MS.gene21514.t1 |
Gene Sequence |
Protein sequence |