Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21516.t1 | XP_024639117.1 | 77.1 | 140 | 24 | 3 | 1 | 136 | 1 | 136 | 1.30E-47 | 199.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21516.t1 | Q9S7M2 | 36.7 | 109 | 58 | 2 | 39 | 136 | 112 | 220 | 8.3e-11 | 68.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21516.t1 | A0A396HSW0 | 86.0 | 107 | 14 | 1 | 31 | 136 | 6 | 112 | 9.0e-43 | 182.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene21516.t1 | TF | Tify |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21516.t1 | MTR_5g013515 | 85.714 | 105 | 14 | 1 | 33 | 136 | 1 | 105 | 5.15e-63 | 189 |
| MS.gene21516.t1 | MTR_5g013530 | 70.803 | 137 | 31 | 4 | 1 | 136 | 1 | 129 | 1.36e-61 | 187 |
| MS.gene21516.t1 | MTR_5g013530 | 71.963 | 107 | 23 | 2 | 31 | 136 | 7 | 107 | 1.14e-48 | 153 |
| MS.gene21516.t1 | MTR_5g013520 | 70.755 | 106 | 24 | 2 | 32 | 136 | 1 | 100 | 1.44e-48 | 153 |
| MS.gene21516.t1 | MTR_2g042900 | 41.912 | 136 | 44 | 4 | 27 | 136 | 99 | 225 | 5.20e-26 | 98.6 |
| MS.gene21516.t1 | MTR_2g042900 | 34.337 | 166 | 44 | 5 | 27 | 136 | 99 | 255 | 4.00e-20 | 83.2 |
| MS.gene21516.t1 | MTR_4g124960 | 36.082 | 97 | 39 | 2 | 40 | 136 | 95 | 168 | 4.06e-14 | 65.9 |
| MS.gene21516.t1 | MTR_4g124960 | 36.082 | 97 | 39 | 2 | 40 | 136 | 95 | 168 | 4.84e-14 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21516.t1 | AT1G19180 | 43.269 | 104 | 49 | 4 | 39 | 136 | 53 | 152 | 3.63e-17 | 73.9 |
| MS.gene21516.t1 | AT1G19180 | 43.269 | 104 | 49 | 4 | 39 | 136 | 119 | 218 | 1.61e-16 | 73.6 |
| MS.gene21516.t1 | AT1G19180 | 43.269 | 104 | 49 | 4 | 39 | 136 | 119 | 218 | 1.61e-16 | 73.6 |
| MS.gene21516.t1 | AT1G74950 | 36.697 | 109 | 58 | 2 | 39 | 136 | 112 | 220 | 4.82e-16 | 72.0 |
| MS.gene21516.t1 | AT1G74950 | 36.697 | 109 | 58 | 2 | 39 | 136 | 112 | 220 | 5.99e-16 | 72.0 |
Find 24 sgRNAs with CRISPR-Local
Find 275 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTACAAGAGGTTTCAAATTT+AGG | 0.093614 | 5.1:-6236678 | MS.gene21516:CDS |
| TCATCCTCACCTGTTATTTA+TGG | 0.150258 | 5.1:-6236323 | MS.gene21516:intron |
| GGCTTCACTTCATCGGTTCT+TGG | 0.289096 | 5.1:-6231475 | MS.gene21516:CDS |
| TTTCAAATTTAGGAAATTCC+AGG | 0.358166 | 5.1:-6236668 | MS.gene21516:intron |
| TTGAGAGTTAGTAGTTCCTT+TGG | 0.375053 | 5.1:+6236433 | None:intergenic |
| ATTCAGATTTATCAATTACT+AGG | 0.446451 | 5.1:-6231500 | MS.gene21516:intron |
| GAATTTCTAGCAAGAAATGA+TGG | 0.446507 | 5.1:+6236368 | None:intergenic |
| ATTGTCATTTGTGCACATCT+AGG | 0.463250 | 5.1:+6236530 | None:intergenic |
| TTCATCGGTTCTTGGAAAGA+AGG | 0.486928 | 5.1:-6231467 | MS.gene21516:CDS |
| TGATACTTGAAGAGAATTGT+TGG | 0.494345 | 5.1:+6236343 | None:intergenic |
| AGAGTTAGTAGTTCCTTTGG+AGG | 0.509053 | 5.1:+6236436 | None:intergenic |
| AGATTTATCAATTACTAGGA+AGG | 0.513206 | 5.1:-6231496 | MS.gene21516:CDS |
| CTAGGAAGGCTTCACTTCAT+CGG | 0.521487 | 5.1:-6231482 | MS.gene21516:CDS |
| GAAAATTCAACATAGGTGTA+CGG | 0.542214 | 5.1:+6236724 | None:intergenic |
| TCGGTTCTTGGAAAGAAGGA+TGG | 0.543639 | 5.1:-6231463 | MS.gene21516:CDS |
| TGAAAGCATAGTTATTGTTG+TGG | 0.546555 | 5.1:+6236408 | None:intergenic |
| AATGAAGGCTAATATTAAGA+AGG | 0.546955 | 5.1:-6236558 | MS.gene21516:CDS |
| ACATGTTGAAAATTCAACAT+AGG | 0.573945 | 5.1:+6236717 | None:intergenic |
| TCTTGGAAAGAAGGATGGAT+AGG | 0.575095 | 5.1:-6231458 | None:intergenic |
| TCCTCATCTCTCTCTACAAG+AGG | 0.582418 | 5.1:-6236691 | MS.gene21516:CDS |
| TTTACCATAAATAACAGGTG+AGG | 0.612964 | 5.1:+6236319 | None:intergenic |
| AATTTCTAGCAAGAAATGAT+GGG | 0.637681 | 5.1:+6236369 | None:intergenic |
| ACCTCTTGTAGAGAGAGATG+AGG | 0.644344 | 5.1:+6236690 | None:intergenic |
| TTCTAGCAAGAAATGATGGG+TGG | 0.652275 | 5.1:+6236372 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATCTGAATAAATATTAAA+AGG | + | chr5.1:6236687-6236706 | None:intergenic | 10.0% |
| !! | GGTAAAAAAATAATAATAAT+TGG | - | chr5.1:6231895-6231914 | MS.gene21516:intron | 10.0% |
| !! | TTGAAAAAAATTATTCAAAA+TGG | + | chr5.1:6233812-6233831 | None:intergenic | 10.0% |
| !! | TTTATGGTAAAAAAAAAAAT+CGG | - | chr5.1:6235579-6235598 | MS.gene21516:intron | 10.0% |
| !!! | AAAAAAATCTAATTTTTTTC+GGG | - | chr5.1:6232424-6232443 | MS.gene21516:intron | 10.0% |
| !!! | AAATAAAAAAATTGATTCTT+TGG | - | chr5.1:6235895-6235914 | MS.gene21516:intron | 10.0% |
| !!! | AATATGAATTTTTATGTTTT+TGG | + | chr5.1:6232388-6232407 | None:intergenic | 10.0% |
| !!! | ATATACAATTTTACTTAATT+AGG | + | chr5.1:6236470-6236489 | None:intergenic | 10.0% |
| !!! | ATTTAGAAAAATATAGATTT+TGG | - | chr5.1:6235775-6235794 | MS.gene21516:intron | 10.0% |
| !!! | TATACAATTTTACTTAATTA+GGG | + | chr5.1:6236469-6236488 | None:intergenic | 10.0% |
| !!! | TATTTTATTTTTTTTTAGTG+GGG | + | chr5.1:6236374-6236393 | None:intergenic | 10.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | - | chr5.1:6233699-6233718 | MS.gene21516:intron | 100.0% |
| !! | AAAAAAATGAAAAATGAAAG+GGG | - | chr5.1:6233680-6233699 | MS.gene21516:intron | 15.0% |
| !! | ATTATCAAATAAAAGTTCAT+CGG | + | chr5.1:6232654-6232673 | None:intergenic | 15.0% |
| !! | CAAAAAAATGAAAAATGAAA+GGG | - | chr5.1:6233679-6233698 | MS.gene21516:intron | 15.0% |
| !! | CAAAAATCATAATAGAAAAA+AGG | + | chr5.1:6233031-6233050 | None:intergenic | 15.0% |
| !! | CATCAAAAAAAAAAAAAAGA+TGG | - | chr5.1:6233606-6233625 | MS.gene21516:intron | 15.0% |
| !! | TACACTTCTTAATTAATTAT+GGG | + | chr5.1:6233374-6233393 | None:intergenic | 15.0% |
| !! | TTACACTTCTTAATTAATTA+TGG | + | chr5.1:6233375-6233394 | None:intergenic | 15.0% |
| !! | TTTAAATATGAGATGTATTA+TGG | + | chr5.1:6236415-6236434 | None:intergenic | 15.0% |
| !!! | AAATGACAATTTTTTATGAT+GGG | - | chr5.1:6231680-6231699 | MS.gene21516:intron | 15.0% |
| !!! | AAGTTTTTCATCATTTATTT+TGG | - | chr5.1:6232216-6232235 | MS.gene21516:intron | 15.0% |
| !!! | AATTTGACAAAAATTTTAGA+AGG | + | chr5.1:6232185-6232204 | None:intergenic | 15.0% |
| !!! | ATACAATTTTACTTAATTAG+GGG | + | chr5.1:6236468-6236487 | None:intergenic | 15.0% |
| !!! | ATCATAAAAAATTGTCATTT+GGG | + | chr5.1:6231680-6231699 | None:intergenic | 15.0% |
| !!! | ATTATTTCCTATTTCATTTT+TGG | + | chr5.1:6232610-6232629 | None:intergenic | 15.0% |
| !!! | ATTTTATTTTTTTTTAGTGG+GGG | + | chr5.1:6236373-6236392 | None:intergenic | 15.0% |
| !!! | ATTTTTTTACCATAAATAAC+AGG | + | chr5.1:6231886-6231905 | None:intergenic | 15.0% |
| !!! | GATTTTTTTTTTCTTTTGTA+AGG | + | chr5.1:6234097-6234116 | None:intergenic | 15.0% |
| !!! | TCTATATTTTTCTAAATACA+AGG | + | chr5.1:6235772-6235791 | None:intergenic | 15.0% |
| !!! | TGAATAATTTTTTTCAATGT+AGG | - | chr5.1:6233815-6233834 | MS.gene21516:intron | 15.0% |
| !!! | TTATGTATGGTTTTAAATTT+TGG | - | chr5.1:6235999-6236018 | MS.gene21516:intron | 15.0% |
| !!! | TTATTTCCTATTTCATTTTT+GGG | + | chr5.1:6232609-6232628 | None:intergenic | 15.0% |
| !!! | TTATTTTTTGCTTATAATAG+TGG | - | chr5.1:6234845-6234864 | MS.gene21516:intron | 15.0% |
| !!! | TTTTGGGTTTAATATATTTT+TGG | + | chr5.1:6232593-6232612 | None:intergenic | 15.0% |
| !!! | TTTTTTTTACCATAAATAAC+AGG | + | chr5.1:6235575-6235594 | None:intergenic | 15.0% |
| !! | AAAAAAAATCGGATATCTAA+TGG | - | chr5.1:6235590-6235609 | MS.gene21516:intron | 20.0% |
| !! | AAAAAAATCGGATATCTAAT+GGG | - | chr5.1:6235591-6235610 | MS.gene21516:intron | 20.0% |
| !! | AAAAAATGAAAAATGAAAGG+GGG | - | chr5.1:6233681-6233700 | MS.gene21516:intron | 20.0% |
| !! | AACTATATATATCTATGAAC+TGG | - | chr5.1:6233242-6233261 | MS.gene21516:intron | 20.0% |
| !! | AATGAAGACTAATATTATCA+AGG | - | chr5.1:6235328-6235347 | MS.gene21516:intron | 20.0% |
| !! | AATGATACATAATTATGTGT+CGG | - | chr5.1:6234329-6234348 | MS.gene21516:intron | 20.0% |
| !! | AGATTTGAAGATTTGAATTT+GGG | - | chr5.1:6236237-6236256 | MS.gene21516:intron | 20.0% |
| !! | AGTAGCTAAAAAAATGTTAA+TGG | + | chr5.1:6235228-6235247 | None:intergenic | 20.0% |
| !! | ATTAAACCCAAAAATGAAAT+AGG | - | chr5.1:6232600-6232619 | MS.gene21516:intron | 20.0% |
| !! | ATTCAGATTTATCAATTACT+AGG | - | chr5.1:6236697-6236716 | MS.gene21516:CDS | 20.0% |
| !! | CAAAAAAAAAAAAAAGATGG+TGG | - | chr5.1:6233609-6233628 | MS.gene21516:intron | 20.0% |
| !! | CAAACATATCAGTAAAAATA+TGG | + | chr5.1:6233058-6233077 | None:intergenic | 20.0% |
| !! | CATCATAAAAAATTGTCATT+TGG | + | chr5.1:6231681-6231700 | None:intergenic | 20.0% |
| !! | CCAAAAAAATGAAAAATGAA+AGG | - | chr5.1:6233678-6233697 | MS.gene21516:intron | 20.0% |
| !! | GAGTTGAATAAAAGTAATTA+AGG | + | chr5.1:6232243-6232262 | None:intergenic | 20.0% |
| !! | TAGATTTGAAGATTTGAATT+TGG | - | chr5.1:6236236-6236255 | MS.gene21516:intron | 20.0% |
| !! | TTAAATGACATGAATTTGAA+TGG | + | chr5.1:6234522-6234541 | None:intergenic | 20.0% |
| !! | TTAAATGAGATGAATTTGAA+CGG | + | chr5.1:6234669-6234688 | None:intergenic | 20.0% |
| !! | TTGAATTATTATGAAAGAGT+TGG | + | chr5.1:6235032-6235051 | None:intergenic | 20.0% |
| !!! | AAGGATATATGTTTAGTTTA+AGG | - | chr5.1:6234429-6234448 | MS.gene21516:intron | 20.0% |
| !!! | AATAACTTTTCTTCAAAAGT+AGG | - | chr5.1:6233846-6233865 | MS.gene21516:intron | 20.0% |
| !!! | AATGACATTTTTTCAGAAAT+AGG | + | chr5.1:6232471-6232490 | None:intergenic | 20.0% |
| !!! | ATGAAGCAAGAATTATTTTT+TGG | + | chr5.1:6233876-6233895 | None:intergenic | 20.0% |
| !!! | ATTCATTAATTGGCTTATTA+AGG | + | chr5.1:6233138-6233157 | None:intergenic | 20.0% |
| !!! | CAAAAACTTGTTTTTATGAA+AGG | + | chr5.1:6234940-6234959 | None:intergenic | 20.0% |
| !!! | CAAACTTTTTTTTTTTTTGC+TGG | - | chr5.1:6232734-6232753 | MS.gene21516:intron | 20.0% |
| !!! | CAAATGACAATTTTTTATGA+TGG | - | chr5.1:6231679-6231698 | MS.gene21516:intron | 20.0% |
| !!! | CCTTTCATTTTTCATTTTTT+TGG | + | chr5.1:6233681-6233700 | None:intergenic | 20.0% |
| !!! | TATAAGTTGACTAAAAAGTA+AGG | - | chr5.1:6232510-6232529 | MS.gene21516:intron | 20.0% |
| !!! | TATTTGATAATTGATAGACT+AGG | - | chr5.1:6232663-6232682 | MS.gene21516:intron | 20.0% |
| !!! | TGAAATAGATTTTCATTTTG+AGG | - | chr5.1:6235808-6235827 | MS.gene21516:intron | 20.0% |
| !!! | TGTTTTATAATATTCAAGAG+TGG | + | chr5.1:6233913-6233932 | None:intergenic | 20.0% |
| !!! | TTAAAAAAATCTAAAGCTGT+TGG | - | chr5.1:6235685-6235704 | MS.gene21516:intron | 20.0% |
| !!! | TTAATTAAGAAGTGTAATTC+TGG | - | chr5.1:6233378-6233397 | MS.gene21516:intron | 20.0% |
| !!! | TTATTTTTACAGTGTAATGA+AGG | - | chr5.1:6231624-6231643 | MS.gene21516:intron | 20.0% |
| !!! | TTTTATTTTTTTTTAGTGGG+GGG | + | chr5.1:6236372-6236391 | None:intergenic | 20.0% |
| ! | AAAAAGGTTATCAATTTGAC+AGG | + | chr5.1:6233015-6233034 | None:intergenic | 25.0% |
| ! | AAAAATGAAAAATGAAAGGG+GGG | - | chr5.1:6233682-6233701 | MS.gene21516:intron | 25.0% |
| ! | AATGAAGGCTAATATTAAGA+AGG | - | chr5.1:6231639-6231658 | MS.gene21516:intron | 25.0% |
| ! | ACATGTTGAAAATTCAACAT+AGG | + | chr5.1:6231483-6231502 | None:intergenic | 25.0% |
| ! | AGATTTATCAATTACTAGGA+AGG | - | chr5.1:6236701-6236720 | MS.gene21516:CDS | 25.0% |
| ! | ATCTTACCTAAAATATTAGG+GGG | + | chr5.1:6236518-6236537 | None:intergenic | 25.0% |
| ! | ATTATCTGACTTTCAATCAA+TGG | + | chr5.1:6232900-6232919 | None:intergenic | 25.0% |
| ! | ATTGAAATCAACAATTCCTT+TGG | - | chr5.1:6232918-6232937 | MS.gene21516:intron | 25.0% |
| ! | ATTTCGAAACAAGAAGTAAA+GGG | + | chr5.1:6232983-6233002 | None:intergenic | 25.0% |
| ! | CAATTAATGAATTCATGTCA+TGG | - | chr5.1:6233146-6233165 | MS.gene21516:intron | 25.0% |
| ! | CATGACATGAATTCATTAAT+TGG | + | chr5.1:6233148-6233167 | None:intergenic | 25.0% |
| ! | CATGATTCATGTTTATAACA+TGG | - | chr5.1:6235260-6235279 | MS.gene21516:intron | 25.0% |
| ! | CCTACTAAAAAAAATGTTGA+AGG | + | chr5.1:6231589-6231608 | None:intergenic | 25.0% |
| ! | GATCTTACCTAAAATATTAG+GGG | + | chr5.1:6236519-6236538 | None:intergenic | 25.0% |
| ! | GATTTGAAGATTTGAATTTG+GGG | - | chr5.1:6236238-6236257 | MS.gene21516:intron | 25.0% |
| ! | GGATCTTACCTAAAATATTA+GGG | + | chr5.1:6236520-6236539 | None:intergenic | 25.0% |
| ! | TAATTGGATATCTATTTGAG+TGG | - | chr5.1:6231911-6231930 | MS.gene21516:intron | 25.0% |
| ! | TACAATCAAACAGTAATTAG+TGG | + | chr5.1:6232111-6232130 | None:intergenic | 25.0% |
| ! | TATTTCGAAACAAGAAGTAA+AGG | + | chr5.1:6232984-6233003 | None:intergenic | 25.0% |
| ! | TTATACTACTTTCTTCATGA+TGG | + | chr5.1:6233649-6233668 | None:intergenic | 25.0% |
| ! | TTGTAAAAATGTACGAGTTA+TGG | - | chr5.1:6234568-6234587 | MS.gene21516:intron | 25.0% |
| ! | TTTCAAATTTAGGAAATTCC+AGG | - | chr5.1:6231529-6231548 | MS.gene21516:intron | 25.0% |
| !! | AAAAAAATCAGCATTTTTCG+AGG | - | chr5.1:6234108-6234127 | MS.gene21516:intron | 25.0% |
| !! | ACTACCACAATTTAAAACTA+CGG | - | chr5.1:6236630-6236649 | MS.gene21516:intron | 25.0% |
| !! | AGATTCAATACTTTTGCAAA+AGG | + | chr5.1:6232776-6232795 | None:intergenic | 25.0% |
| !! | ATTCATGTCATTTAAAAGTG+TGG | - | chr5.1:6234527-6234546 | MS.gene21516:intron | 25.0% |
| !! | ATTTCACAAAGATGTTTTTC+AGG | + | chr5.1:6234189-6234208 | None:intergenic | 25.0% |
| !! | GTTAATTCTGAAAACTTAAG+AGG | - | chr5.1:6232690-6232709 | MS.gene21516:intron | 25.0% |
| !! | TCTTATTTGTTTGAAAGATC+TGG | + | chr5.1:6232078-6232097 | None:intergenic | 25.0% |
| !! | TTTCACAAAGATGTTTTTCA+GGG | + | chr5.1:6234188-6234207 | None:intergenic | 25.0% |
| !!! | AAAAAATCAGCATTTTTCGA+GGG | - | chr5.1:6234109-6234128 | MS.gene21516:intron | 25.0% |
| !!! | AAAACCGTAGTTTTAAATTG+TGG | + | chr5.1:6236637-6236656 | None:intergenic | 25.0% |
| !!! | AAAATTTCTAGCAAGAAATG+AGG | + | chr5.1:6235522-6235541 | None:intergenic | 25.0% |
| !!! | AAATTTCTAGCAAGAAATGA+GGG | + | chr5.1:6235521-6235540 | None:intergenic | 25.0% |
| !!! | AATTTCTAGCAAGAAATGAT+GGG | + | chr5.1:6231831-6231850 | None:intergenic | 25.0% |
| !!! | CCTTCAACATTTTTTTTAGT+AGG | - | chr5.1:6231586-6231605 | MS.gene21516:intron | 25.0% |
| !!! | CTTGATTTTGATTTGTGTAA+TGG | - | chr5.1:6231939-6231958 | MS.gene21516:intron | 25.0% |
| !!! | TCAGTACACTTTTTTATGAA+AGG | + | chr5.1:6234639-6234658 | None:intergenic | 25.0% |
| AAAAGCAATTAATTTCCGTG+GGG | - | chr5.1:6234155-6234174 | MS.gene21516:intron | 30.0% | |
| AAAATGAAAAATGAAAGGGG+GGG | - | chr5.1:6233683-6233702 | MS.gene21516:intron | 30.0% | |
| AATAAATAGCATAAGACGAG+TGG | + | chr5.1:6236544-6236563 | None:intergenic | 30.0% | |
| ATACAGATTTACCAATGACT+AGG | - | chr5.1:6232002-6232021 | MS.gene21516:intron | 30.0% | |
| ATGAACTGGATCAATCATTA+GGG | - | chr5.1:6233256-6233275 | MS.gene21516:intron | 30.0% | |
| CAAAAGCAATTAATTTCCGT+GGG | - | chr5.1:6234154-6234173 | MS.gene21516:intron | 30.0% | |
| CATTATATATGCAAGGTTCA+AGG | + | chr5.1:6233995-6234014 | None:intergenic | 30.0% | |
| CGAATGGAAAATCAGAAAAT+AGG | - | chr5.1:6233786-6233805 | MS.gene21516:intron | 30.0% | |
| CGGATCTTACCTAAAATATT+AGG | + | chr5.1:6236521-6236540 | None:intergenic | 30.0% | |
| CTACAAGAGGTTTCAAATTT+AGG | - | chr5.1:6231519-6231538 | MS.gene21516:intron | 30.0% | |
| CTACAAGAGGTTTCAAATTT+GGG | - | chr5.1:6231519-6231538 | MS.gene21516:intron | 30.0% | |
| GAAAATTCAACATAGGTGTA+CGG | + | chr5.1:6231476-6231495 | None:intergenic | 30.0% | |
| GACAATGCATTATATATGCA+AGG | + | chr5.1:6234002-6234021 | None:intergenic | 30.0% | |
| TATGAACTGGATCAATCATT+AGG | - | chr5.1:6233255-6233274 | MS.gene21516:intron | 30.0% | |
| TCTACAAGAGGTTTCAAATT+TGG | - | chr5.1:6231518-6231537 | MS.gene21516:intron | 30.0% | |
| TGAAAAAGTCAACGATATCA+TGG | - | chr5.1:6235421-6235440 | MS.gene21516:intron | 30.0% | |
| TGAAAAAGTCAAGGACATTA+TGG | - | chr5.1:6231732-6231751 | MS.gene21516:intron | 30.0% | |
| TGATACTTGAAGAGAATTGT+TGG | + | chr5.1:6231857-6231876 | None:intergenic | 30.0% | |
| TTAAAGTTAAATAGTAGCCG+TGG | + | chr5.1:6236165-6236184 | None:intergenic | 30.0% | |
| TTTACCATAAATAACAGGTG+AGG | + | chr5.1:6231881-6231900 | None:intergenic | 30.0% | |
| ! | ATTGGCTTATTAAGGTTTGT+TGG | + | chr5.1:6233130-6233149 | None:intergenic | 30.0% |
| ! | GATATAAAGCTTTGTGTTGA+TGG | + | chr5.1:6233497-6233516 | None:intergenic | 30.0% |
| ! | TGAAAGCATAGTTATTGTTG+TGG | + | chr5.1:6231792-6231811 | None:intergenic | 30.0% |
| ! | TTAAATTTTGGATGCAGTTG+CGG | - | chr5.1:6236011-6236030 | MS.gene21516:intron | 30.0% |
| ! | TTCAATACTTTTGCAAAAGG+AGG | + | chr5.1:6232773-6232792 | None:intergenic | 30.0% |
| ! | TTGGCTTATTAAGGTTTGTT+GGG | + | chr5.1:6233129-6233148 | None:intergenic | 30.0% |
| ! | TTTCTCTATTTTGTAGGACT+TGG | - | chr5.1:6233281-6233300 | MS.gene21516:intron | 30.0% |
| !! | AATTTCTAGCAAGAAATGAG+GGG | + | chr5.1:6235520-6235539 | None:intergenic | 30.0% |
| !! | GAATTTCTAGCAAGAAATGA+TGG | + | chr5.1:6231832-6231851 | None:intergenic | 30.0% |
| !! | GGAAATTAATTGCTTTTGCA+AGG | + | chr5.1:6234152-6234171 | None:intergenic | 30.0% |
| !! | TTATTATGAAAGAGTTGGTG+AGG | + | chr5.1:6235027-6235046 | None:intergenic | 30.0% |
| !! | TTCACAAAGATGTTTTTCAG+GGG | + | chr5.1:6234187-6234206 | None:intergenic | 30.0% |
| !! | TTGTGTAACGGTTTTATGTA+TGG | - | chr5.1:6235986-6236005 | MS.gene21516:intron | 30.0% |
| !!! | AAAAATCAGCATTTTTCGAG+GGG | - | chr5.1:6234110-6234129 | MS.gene21516:intron | 30.0% |
| !!! | ATGTTGCTTTGTGCTATTTT+TGG | + | chr5.1:6235081-6235100 | None:intergenic | 30.0% |
| AAACCTCTTGTAGAAAGAGA+TGG | + | chr5.1:6235151-6235170 | None:intergenic | 35.0% | |
| AAACTGCCCAATATTTGAGA+GGG | - | chr5.1:6235955-6235974 | MS.gene21516:intron | 35.0% | |
| AAATGAAAAATGAAAGGGGG+GGG | - | chr5.1:6233684-6233703 | MS.gene21516:intron | 35.0% | |
| AACCTCTTGTAGAAAGAGAT+GGG | + | chr5.1:6235150-6235169 | None:intergenic | 35.0% | |
| AAGTTAAAGAAAGACAGAGC+TGG | + | chr5.1:6233212-6233231 | None:intergenic | 35.0% | |
| ATTGAAATCGTCTTATGCAG+TGG | - | chr5.1:6236312-6236331 | MS.gene21516:intron | 35.0% | |
| ATTTGTTTGAAAGATCTGGC+TGG | + | chr5.1:6232074-6232093 | None:intergenic | 35.0% | |
| CCATAAATAACAGGTGTAGA+TGG | + | chr5.1:6235566-6235585 | None:intergenic | 35.0% | |
| CTAAATGTTCGTGAATGTTG+TGG | - | chr5.1:6233332-6233351 | MS.gene21516:intron | 35.0% | |
| GCAAAAGCAATTAATTTCCG+TGG | - | chr5.1:6234153-6234172 | MS.gene21516:intron | 35.0% | |
| GTACAAAACAAAACACGCAT+AGG | - | chr5.1:6234888-6234907 | MS.gene21516:intron | 35.0% | |
| GTTGGGTTACTTGTTTGATA+TGG | + | chr5.1:6233112-6233131 | None:intergenic | 35.0% | |
| TATTCCAGCTGAAAAAGTCA+AGG | - | chr5.1:6231723-6231742 | MS.gene21516:intron | 35.0% | |
| TCAACAATTCCTTTGGACAT+AGG | - | chr5.1:6232925-6232944 | MS.gene21516:intron | 35.0% | |
| TGCATATACAGTGAATGTAG+AGG | + | chr5.1:6233407-6233426 | None:intergenic | 35.0% | |
| TGGTATTTGAGCTGAATTGT+TGG | + | chr5.1:6235546-6235565 | None:intergenic | 35.0% | |
| TTAATAGACCCTCTCTCATT+TGG | - | chr5.1:6236440-6236459 | MS.gene21516:CDS | 35.0% | |
| TTGAGAGTTAGTAGTTCCTT+TGG | + | chr5.1:6231767-6231786 | None:intergenic | 35.0% | |
| TTTACCACACGCAAATAACA+TGG | + | chr5.1:6233946-6233965 | None:intergenic | 35.0% | |
| ! | ATTATGGTCTTTTCCTCCAA+AGG | - | chr5.1:6231748-6231767 | MS.gene21516:intron | 35.0% |
| ! | ATTGTCATTTGTGCACATCT+AGG | + | chr5.1:6231670-6231689 | None:intergenic | 35.0% |
| ! | CAAAGCTTTATATCGCTGAT+AGG | - | chr5.1:6233503-6233522 | MS.gene21516:intron | 35.0% |
| ! | CCATCTACACCTGTTATTTA+TGG | - | chr5.1:6235563-6235582 | MS.gene21516:intron | 35.0% |
| ! | TCATCCTCACCTGTTATTTA+TGG | - | chr5.1:6231874-6231893 | MS.gene21516:intron | 35.0% |
| ! | TGTTGATGGAAGAATTGACA+TGG | + | chr5.1:6233483-6233502 | None:intergenic | 35.0% |
| ! | TTCTGATTTTCCATTCGAGA+TGG | + | chr5.1:6233783-6233802 | None:intergenic | 35.0% |
| ! | TTTCAAATTTGGGACATTCC+AGG | - | chr5.1:6235168-6235187 | MS.gene21516:intron | 35.0% |
| !! | AGGGTGTTTCTCTATTTTGT+AGG | - | chr5.1:6233275-6233294 | MS.gene21516:intron | 35.0% |
| !! | GGAGCTTGTTGAAAATTCAT+AGG | + | chr5.1:6235128-6235147 | None:intergenic | 35.0% |
| !!! | ATATCGTTGACTTTTTCAGC+TGG | + | chr5.1:6235419-6235438 | None:intergenic | 35.0% |
| !!! | TGTGGTAAACCTGTTTTTTG+TGG | - | chr5.1:6233957-6233976 | MS.gene21516:intron | 35.0% |
| AAATAGCATAAGACGAGTGG+CGG | + | chr5.1:6236541-6236560 | None:intergenic | 40.0% | |
| AAGGTTCAAGGTTCAAATCC+CGG | + | chr5.1:6233983-6234002 | None:intergenic | 40.0% | |
| AAGTTAAATAGTAGCCGTGG+TGG | + | chr5.1:6236162-6236181 | None:intergenic | 40.0% | |
| AATGAAAAATGAAAGGGGGG+GGG | - | chr5.1:6233685-6233704 | MS.gene21516:intron | 40.0% | |
| AATGCGTATTGCTACTGTTG+CGG | - | chr5.1:6236072-6236091 | MS.gene21516:intron | 40.0% | |
| AATTGTGGTAGTTTCCGTGA+TGG | + | chr5.1:6236622-6236641 | None:intergenic | 40.0% | |
| ACCTCTTGTAGAAAGAGATG+GGG | + | chr5.1:6235149-6235168 | None:intergenic | 40.0% | |
| AGAGTTAGTAGTTCCTTTGG+AGG | + | chr5.1:6231764-6231783 | None:intergenic | 40.0% | |
| AGTGAAGCTTTCCTAGTCAT+TGG | + | chr5.1:6232016-6232035 | None:intergenic | 40.0% | |
| AGTTAAATAGTAGCCGTGGT+GGG | + | chr5.1:6236161-6236180 | None:intergenic | 40.0% | |
| CAAACTGCCCAATATTTGAG+AGG | - | chr5.1:6235954-6235973 | MS.gene21516:intron | 40.0% | |
| CAAGCACCCTCTCAAATATT+GGG | + | chr5.1:6235964-6235983 | None:intergenic | 40.0% | |
| CATGCATTTCCTATGTCCAA+AGG | + | chr5.1:6232937-6232956 | None:intergenic | 40.0% | |
| CTAGGAAAGCTTCACTTCAT+CGG | - | chr5.1:6232020-6232039 | MS.gene21516:intron | 40.0% | |
| CTGCAATTACAATGCCATCA+CGG | - | chr5.1:6236605-6236624 | MS.gene21516:intron | 40.0% | |
| GCCATCAATTTGTGATCAGT+CGG | - | chr5.1:6232798-6232817 | MS.gene21516:intron | 40.0% | |
| GTAGCAAAAGAACATGTACC+TGG | + | chr5.1:6231550-6231569 | None:intergenic | 40.0% | |
| TCTTGGAGAAAAGGAAGGAT+AGG | - | chr5.1:6232044-6232063 | MS.gene21516:intron | 40.0% | |
| ! | ATCATGGTCTTTTGCACCAA+AGG | - | chr5.1:6235437-6235456 | MS.gene21516:intron | 40.0% |
| ! | ATTGTCATTTGGGCACTTCT+AGG | + | chr5.1:6235359-6235378 | None:intergenic | 40.0% |
| ! | CATTCTGATTTGTGGTCTTG+TGG | + | chr5.1:6233184-6233203 | None:intergenic | 40.0% |
| ! | TGGAGCTACATTCTGATTTG+TGG | + | chr5.1:6233192-6233211 | None:intergenic | 40.0% |
| ! | TTCGCTCCCCCTAATATTTT+AGG | - | chr5.1:6236509-6236528 | MS.gene21516:CDS | 40.0% |
| ! | TTCTAGCAAGAAATGATGGG+TGG | + | chr5.1:6231828-6231847 | None:intergenic | 40.0% |
| ! | TTTGCCATGTTATTTGCGTG+TGG | - | chr5.1:6233939-6233958 | MS.gene21516:intron | 40.0% |
| !! | AATTGCTTTTGCAAGGAGCA+AGG | + | chr5.1:6234145-6234164 | None:intergenic | 40.0% |
| !! | TATGAAAGAGTTGGTGAGGA+GGG | + | chr5.1:6235023-6235042 | None:intergenic | 40.0% |
| !! | TTATGAAAGAGTTGGTGAGG+AGG | + | chr5.1:6235024-6235043 | None:intergenic | 40.0% |
| !! | TTCATCGGTTCTTGGAAAGA+AGG | - | chr5.1:6236730-6236749 | MS.gene21516:CDS | 40.0% |
| !! | TTCATCGGTTCTTGGAGAAA+AGG | - | chr5.1:6232035-6232054 | MS.gene21516:intron | 40.0% |
| !!! | ATGTCCTTGACTTTTTCAGC+TGG | + | chr5.1:6231730-6231749 | None:intergenic | 40.0% |
| !!! | GTAAACCTGTTTTTTGTGGC+CGG | - | chr5.1:6233961-6233980 | MS.gene21516:intron | 40.0% |
| !!! | TAAACCTGTTTTTTGTGGCC+GGG | - | chr5.1:6233962-6233981 | MS.gene21516:intron | 40.0% |
| AAATCCCGGCCACAAAAAAC+AGG | + | chr5.1:6233969-6233988 | None:intergenic | 45.0% | |
| ACCTCTTGTAGAGAGAGATG+AGG | + | chr5.1:6231510-6231529 | None:intergenic | 45.0% | |
| ATGAAAAATGAAAGGGGGGG+GGG | - | chr5.1:6233686-6233705 | MS.gene21516:intron | 45.0% | |
| ATTCATGTCATGGCTCTCCT+TGG | - | chr5.1:6233156-6233175 | MS.gene21516:intron | 45.0% | |
| CATACACTATTGACCCACCA+CGG | - | chr5.1:6236145-6236164 | MS.gene21516:intron | 45.0% | |
| CCAAGCACCCTCTCAAATAT+TGG | + | chr5.1:6235965-6235984 | None:intergenic | 45.0% | |
| CTAGGAAGGCTTCACTTCAT+CGG | - | chr5.1:6236715-6236734 | MS.gene21516:CDS | 45.0% | |
| GAAATCGTCTTATGCAGTGG+CGG | - | chr5.1:6236315-6236334 | MS.gene21516:intron | 45.0% | |
| GCCGACTGATCACAAATTGA+TGG | + | chr5.1:6232802-6232821 | None:intergenic | 45.0% | |
| GGTCAATAGTGTATGCATGG+TGG | + | chr5.1:6236140-6236159 | None:intergenic | 45.0% | |
| GTGGGTCAATAGTGTATGCA+TGG | + | chr5.1:6236143-6236162 | None:intergenic | 45.0% | |
| GTTATTGCTGTGGTTTCGAG+AGG | + | chr5.1:6235471-6235490 | None:intergenic | 45.0% | |
| GTTGCTAGTTGCTACGACAA+AGG | + | chr5.1:6234066-6234085 | None:intergenic | 45.0% | |
| TCCCCATCTCTTTCTACAAG+AGG | - | chr5.1:6235145-6235164 | MS.gene21516:intron | 45.0% | |
| TCCTCATCTCTCTCTACAAG+AGG | - | chr5.1:6231506-6231525 | MS.gene21516:intron | 45.0% | |
| TCGAGAGGTAGTAGTTCCTT+TGG | + | chr5.1:6235456-6235475 | None:intergenic | 45.0% | |
| TCGGTTCTTGGAAAGAAGGA+TGG | - | chr5.1:6236734-6236753 | MS.gene21516:CDS | 45.0% | |
| TCGGTTCTTGGAGAAAAGGA+AGG | - | chr5.1:6232039-6232058 | MS.gene21516:intron | 45.0% | |
| TGAGCTTAGCTCAACTGGTA+AGG | + | chr5.1:6234024-6234043 | None:intergenic | 45.0% | |
| ! | TGGAAGCGTAGTTATTGCTG+TGG | + | chr5.1:6235481-6235500 | None:intergenic | 45.0% |
| !! | AGCTTCACTTCATCGGTTCT+TGG | - | chr5.1:6232027-6232046 | MS.gene21516:intron | 45.0% |
| !! | AGGGTGCTTGGTTTGTGTAA+CGG | - | chr5.1:6235974-6235993 | MS.gene21516:intron | 45.0% |
| !! | CCAATATTTGAGAGGGTGCT+TGG | - | chr5.1:6235962-6235981 | MS.gene21516:intron | 45.0% |
| !!! | ATTTAAAAAAAAATCTATTT+TGG | + | chr5.1:6235857-6235876 | None:intergenic | 5.0% |
| !!! | CATTTAAATTTAAAATAATA+AGG | - | chr5.1:6234410-6234429 | MS.gene21516:intron | 5.0% |
| !!! | TAAAAAAATCTAATTTTTTT+CGG | - | chr5.1:6232423-6232442 | MS.gene21516:intron | 5.0% |
| !!! | TTATTTTATTTTTTTTTAGT+GGG | + | chr5.1:6236375-6236394 | None:intergenic | 5.0% |
| !!! | TTTATTTTATTTTTTTTTAG+TGG | + | chr5.1:6236376-6236395 | None:intergenic | 5.0% |
| AGATGGCACCATCATCCTTC+AGG | + | chr5.1:6233766-6233785 | None:intergenic | 50.0% | |
| GGAGCTCTTAAAGAGCCCAT+GGG | - | chr5.1:6236336-6236355 | MS.gene21516:CDS | 50.0% | |
| GGAGTCATCCTGAAGGATGA+TGG | - | chr5.1:6233755-6233774 | MS.gene21516:intron | 50.0% | |
| TAGGGGAGCCAAATGAGAGA+GGG | + | chr5.1:6236451-6236470 | None:intergenic | 50.0% | |
| TGAAAAATGAAAGGGGGGGG+GGG | - | chr5.1:6233687-6233706 | MS.gene21516:intron | 50.0% | |
| TGGTGAGAGTGAAGAGAGAG+CGG | + | chr5.1:6235000-6235019 | None:intergenic | 50.0% | |
| TTAGGGGAGCCAAATGAGAG+AGG | + | chr5.1:6236452-6236471 | None:intergenic | 50.0% | |
| TTTGCAAGGAGCAAGGTCCT+AGG | + | chr5.1:6234138-6234157 | None:intergenic | 50.0% | |
| TTTGGATGCAGTTGCGGATG+CGG | - | chr5.1:6236017-6236036 | MS.gene21516:intron | 50.0% | |
| !! | GATGATGGTGCCATCTCGAA+TGG | - | chr5.1:6233770-6233789 | MS.gene21516:intron | 50.0% |
| !! | GGCTTCACTTCATCGGTTCT+TGG | - | chr5.1:6236722-6236741 | MS.gene21516:CDS | 50.0% |
| !! | TTTGTGGTCTTGTGGTGCCA+AGG | + | chr5.1:6233176-6233195 | None:intergenic | 50.0% |
| !!! | GCATTTTTCGAGGGGTTCCT+AGG | - | chr5.1:6234118-6234137 | MS.gene21516:intron | 50.0% |
| AAAAATGAAAGGGGGGGGGG+GGG | - | chr5.1:6233689-6233708 | MS.gene21516:intron | 55.0% | |
| CCAGTTGAGCTAAGCTCACG+AGG | - | chr5.1:6234026-6234045 | MS.gene21516:intron | 55.0% | |
| CCTCGTGAGCTTAGCTCAAC+TGG | + | chr5.1:6234029-6234048 | None:intergenic | 55.0% | |
| CGGAGCTCTTAAAGAGCCCA+TGG | - | chr5.1:6236335-6236354 | MS.gene21516:CDS | 55.0% | |
| GAAAAATGAAAGGGGGGGGG+GGG | - | chr5.1:6233688-6233707 | MS.gene21516:intron | 55.0% | |
| GGGGTGACTCTGAGCAAATC+TGG | + | chr5.1:6235501-6235520 | None:intergenic | 55.0% | |
| GTGAGAGGGAGTCATCCTGA+AGG | - | chr5.1:6233748-6233767 | MS.gene21516:intron | 55.0% | |
| TAAAGAGCCCATGGGAGCAG+TGG | - | chr5.1:6236344-6236363 | MS.gene21516:CDS | 55.0% | |
| TAAGCTCACGAGGTCGTGTG+TGG | - | chr5.1:6234036-6234055 | MS.gene21516:intron | 55.0% | |
| ! | TTTCAGGGGCACAAACCCCA+CGG | + | chr5.1:6234173-6234192 | None:intergenic | 55.0% |
| !! | GAAAGAGTTGGTGAGGAGGG+TGG | + | chr5.1:6235020-6235039 | None:intergenic | 55.0% |
| AAAATGAAAGGGGGGGGGGG+GGG | - | chr5.1:6233690-6233709 | MS.gene21516:intron | 60.0% | |
| GCGGTCATTGCAGTTGCGCA+CGG | - | chr5.1:6236036-6236055 | MS.gene21516:intron | 60.0% | |
| AAATGAAAGGGGGGGGGGGG+GGG | - | chr5.1:6233691-6233710 | MS.gene21516:intron | 65.0% | |
| AATGAAAGGGGGGGGGGGGG+GGG | - | chr5.1:6233692-6233711 | MS.gene21516:intron | 70.0% | |
| GGGGGAGCCACTGCTCCCAT+GGG | + | chr5.1:6236354-6236373 | None:intergenic | 70.0% | |
| !! | GGGGGGGGCGTCAAGTGAGA+GGG | - | chr5.1:6233734-6233753 | MS.gene21516:intron | 70.0% |
| ATGAAAGGGGGGGGGGGGGG+GGG | - | chr5.1:6233693-6233712 | MS.gene21516:intron | 75.0% | |
| GGGGGGAGCCACTGCTCCCA+TGG | + | chr5.1:6236355-6236374 | None:intergenic | 75.0% | |
| !! | GGGGGGGGGCGTCAAGTGAG+AGG | - | chr5.1:6233733-6233752 | MS.gene21516:intron | 75.0% |
| ! | TGAAAGGGGGGGGGGGGGGG+GGG | - | chr5.1:6233694-6233713 | MS.gene21516:intron | 80.0% |
| ! | AAAGGGGGGGGGGGGGGGGG+GGG | - | chr5.1:6233696-6233715 | MS.gene21516:intron | 85.0% |
| ! | GAAAGGGGGGGGGGGGGGGG+GGG | - | chr5.1:6233695-6233714 | MS.gene21516:intron | 85.0% |
| ! | AAGGGGGGGGGGGGGGGGGG+GGG | - | chr5.1:6233697-6233716 | MS.gene21516:intron | 90.0% |
| ! | AGGGGGGGGGGGGGGGGGGG+GGG | - | chr5.1:6233698-6233717 | MS.gene21516:intron | 95.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 6231459 | 6236760 | 6231459 | ID=MS.gene21516 |
| chr5.1 | mRNA | 6231459 | 6236760 | 6231459 | ID=MS.gene21516.t1;Parent=MS.gene21516 |
| chr5.1 | exon | 6236669 | 6236760 | 6236669 | ID=MS.gene21516.t1.exon1;Parent=MS.gene21516.t1 |
| chr5.1 | CDS | 6236669 | 6236760 | 6236669 | ID=cds.MS.gene21516.t1;Parent=MS.gene21516.t1 |
| chr5.1 | exon | 6236324 | 6236583 | 6236324 | ID=MS.gene21516.t1.exon2;Parent=MS.gene21516.t1 |
| chr5.1 | CDS | 6236324 | 6236583 | 6236324 | ID=cds.MS.gene21516.t1;Parent=MS.gene21516.t1 |
| chr5.1 | exon | 6231459 | 6231516 | 6231459 | ID=MS.gene21516.t1.exon3;Parent=MS.gene21516.t1 |
| chr5.1 | CDS | 6231459 | 6231516 | 6231459 | ID=cds.MS.gene21516.t1;Parent=MS.gene21516.t1 |
| Gene Sequence |
| Protein sequence |
