Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21526.t1 | XP_003611383.2 | 96.6 | 499 | 11 | 1 | 1 | 493 | 1 | 499 | 1.70E-275 | 958 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21526.t1 | Q8W4H1 | 50.2 | 516 | 203 | 15 | 1 | 470 | 1 | 508 | 5.7e-118 | 426.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21526.t1 | G7JYK7 | 96.6 | 499 | 11 | 1 | 1 | 493 | 1 | 499 | 1.2e-275 | 958.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene21526.t1 | TF | C2C2-GATA |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21526.t1 | MTR_5g013370 | 96.593 | 499 | 11 | 1 | 1 | 493 | 1 | 499 | 0.0 | 1002 |
MS.gene21526.t1 | MTR_5g013370 | 96.247 | 373 | 8 | 1 | 1 | 367 | 1 | 373 | 0.0 | 751 |
MS.gene21526.t1 | MTR_4g099410 | 64.603 | 517 | 128 | 8 | 15 | 479 | 20 | 533 | 0.0 | 612 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21526.t1 | AT4G17570 | 50.097 | 515 | 209 | 12 | 1 | 470 | 1 | 512 | 2.76e-141 | 416 |
MS.gene21526.t1 | AT4G17570 | 49.515 | 515 | 208 | 13 | 1 | 470 | 1 | 508 | 2.55e-136 | 403 |
MS.gene21526.t1 | AT4G17570 | 49.102 | 501 | 207 | 12 | 15 | 470 | 27 | 524 | 6.57e-129 | 385 |
MS.gene21526.t1 | AT5G47140 | 48.473 | 491 | 209 | 13 | 1 | 470 | 1 | 468 | 2.34e-123 | 369 |
Find 91 sgRNAs with CRISPR-Local
Find 228 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGTCTTTGTGATAATTCTTT+TGG | 0.201366 | 5.1:+6402074 | None:intergenic |
TATCTTCATCAAAAGCCTTT+TGG | 0.231803 | 5.1:+6404713 | None:intergenic |
AGCTCTCTTTCATTTGATAA+TGG | 0.271694 | 5.1:-6403538 | MS.gene21526:CDS |
CGCCTTTGATATCTCTTTGC+CGG | 0.285823 | 5.1:-6402723 | MS.gene21526:CDS |
TTCAAAGTCTCGCAGTCTTC+AGG | 0.296864 | 5.1:+6402692 | None:intergenic |
ACCAAATTGTGCGCAGCTTT+CGG | 0.305747 | 5.1:+6404651 | None:intergenic |
AGTGACGCATATTCTTATTC+TGG | 0.322140 | 5.1:-6403502 | MS.gene21526:CDS |
CATCAGGAGGCAAAGGAAAT+AGG | 0.324121 | 5.1:+6402034 | None:intergenic |
TCCGAAAGCTGCGCACAATT+TGG | 0.336033 | 5.1:-6404652 | MS.gene21526:CDS |
GACCTGCTCAGTCAGTGGTC+TGG | 0.355510 | 5.1:-6403810 | MS.gene21526:CDS |
AACCACTATAATGTAGTATC+TGG | 0.362580 | 5.1:-6404766 | MS.gene21526:CDS |
ACCTGCTCAGTCAGTGGTCT+GGG | 0.368180 | 5.1:-6403809 | MS.gene21526:CDS |
TTGTTGTTTGTGCAGCCTTA+AGG | 0.373323 | 5.1:-6402810 | MS.gene21526:intron |
ATGAGTTGTCAAAGTCGAAA+TGG | 0.378385 | 5.1:-6402655 | MS.gene21526:CDS |
TAAGAATATGCGTCACTCAT+TGG | 0.378524 | 5.1:+6403508 | None:intergenic |
AGCAGAAATCAGAACTTTCC+AGG | 0.401146 | 5.1:-6402427 | MS.gene21526:intron |
AAGAATATGCGTCACTCATT+GGG | 0.411487 | 5.1:+6403509 | None:intergenic |
TTGCATAGTATTGGCTTCTC+TGG | 0.427042 | 5.1:+6404949 | None:intergenic |
GCACACCACTTTGGCGCAAT+GGG | 0.430676 | 5.1:-6404975 | MS.gene21526:CDS |
CCACATGCATTGCATAGTAT+TGG | 0.431658 | 5.1:+6404940 | None:intergenic |
ATGAGTAATCGATCAAGTTC+AGG | 0.432484 | 5.1:-6404691 | MS.gene21526:CDS |
CCAATGGTCTCTGTCGAGAT+AGG | 0.442024 | 5.1:-6403622 | MS.gene21526:CDS |
TTACACACCTTTACATGCTC+GGG | 0.442559 | 5.1:-6404884 | MS.gene21526:CDS |
CTGCACCCAACTTCATACTT+TGG | 0.442894 | 5.1:-6401907 | MS.gene21526:CDS |
TTTCAGCAGCTTCTTGCAAA+AGG | 0.446745 | 5.1:-6402746 | MS.gene21526:CDS |
TCTCTTCACATTTGCAACAT+TGG | 0.446975 | 5.1:+6402459 | None:intergenic |
ATGCATGTGGTTCGCGGTGG+AGG | 0.452122 | 5.1:-6404927 | MS.gene21526:CDS |
GTGAGCTTCTCAACAGAAGA+TGG | 0.452294 | 5.1:+6403730 | None:intergenic |
AGCAAGTGTGAGCTTGCATC+AGG | 0.455435 | 5.1:+6402018 | None:intergenic |
TGCAGCCTTAAGGTCATGTT+CGG | 0.457133 | 5.1:-6402800 | MS.gene21526:intron |
AAGAAGTGAACTTGCTCAAA+CGG | 0.458776 | 5.1:-6404795 | MS.gene21526:CDS |
ATTACACACCTTTACATGCT+CGG | 0.466186 | 5.1:-6404885 | MS.gene21526:CDS |
GGCACACCACTTTGGCGCAA+TGG | 0.466586 | 5.1:-6404976 | MS.gene21526:CDS |
TGCGGAAAAGAATTATTAGA+AGG | 0.469116 | 5.1:+6401940 | None:intergenic |
CTGGAAAGAGTACAAATCCT+TGG | 0.472378 | 5.1:-6403231 | MS.gene21526:CDS |
TTGATGATCAAAGGGCTTCA+AGG | 0.472955 | 5.1:-6404846 | MS.gene21526:CDS |
GTTCGGTAGCTCTCAATTCA+AGG | 0.476255 | 5.1:-6402783 | MS.gene21526:CDS |
ACAGATGCTAGTGATCTAAC+AGG | 0.476473 | 5.1:-6404625 | MS.gene21526:intron |
TGAGCACCAAAGTATGAAGT+TGG | 0.490384 | 5.1:+6401901 | None:intergenic |
GAGTAGAATTCTAACCCATC+AGG | 0.493607 | 5.1:+6402937 | None:intergenic |
TTGCAACAGGCACACCACTT+TGG | 0.494644 | 5.1:-6404984 | MS.gene21526:intron |
TGAGTTGTCAAAGTCGAAAT+GGG | 0.496810 | 5.1:-6402654 | MS.gene21526:CDS |
GATGCTATACCAGCAGATCC+TGG | 0.497891 | 5.1:+6402484 | None:intergenic |
TCGGATGTTCCAGGATCTGC+TGG | 0.499260 | 5.1:-6402493 | MS.gene21526:CDS |
TTTCAGTGACAAGTCTCAGC+TGG | 0.499546 | 5.1:-6403250 | MS.gene21526:intron |
CGATGCAGAGATGTAAAAGT+AGG | 0.503787 | 5.1:-6402525 | MS.gene21526:intron |
GACATGGAAGTGTTCTCATT+AGG | 0.509357 | 5.1:-6403600 | MS.gene21526:CDS |
CATAGTATTGGCTTCTCTGG+TGG | 0.517941 | 5.1:+6404952 | None:intergenic |
AGCTACCGAACATGACCTTA+AGG | 0.523689 | 5.1:+6402795 | None:intergenic |
CTCCAGATACTACATTATAG+TGG | 0.528306 | 5.1:+6404764 | None:intergenic |
TGCTGAGCTACTACTAGTGC+TGG | 0.529471 | 5.1:+6401876 | None:intergenic |
ATTATTGAAGTTTCTTCCTG+TGG | 0.538673 | 5.1:-6402977 | MS.gene21526:CDS |
TTACAACCAGGGATTCCAAA+AGG | 0.539474 | 5.1:-6404728 | MS.gene21526:CDS |
GAGCACCAAAGTATGAAGTT+GGG | 0.542626 | 5.1:+6401902 | None:intergenic |
TCGTCGCGAGCTACATAACT+AGG | 0.544739 | 5.1:+6403574 | None:intergenic |
TTCTGAGACATGGGTAAACA+AGG | 0.546162 | 5.1:-6406360 | None:intergenic |
TTATGAAAGTGAAGCACCAA+TGG | 0.548282 | 5.1:-6403638 | MS.gene21526:CDS |
GTTTCAGCCCGAGCATGTAA+AGG | 0.551747 | 5.1:+6404877 | None:intergenic |
GGTTCGCGGTGGAGGACAAA+GGG | 0.557202 | 5.1:-6404919 | MS.gene21526:CDS |
GATACTGCTAAACTTCCTGA+TGG | 0.560155 | 5.1:-6402952 | MS.gene21526:CDS |
TCCCAGACCACTGACTGAGC+AGG | 0.563264 | 5.1:+6403808 | None:intergenic |
TGGTTCGCGGTGGAGGACAA+AGG | 0.567138 | 5.1:-6404920 | MS.gene21526:CDS |
TTTAGGACCTGCTCAGTCAG+TGG | 0.572891 | 5.1:-6403815 | MS.gene21526:intron |
AGTTTAGCAGTATCAACCAC+AGG | 0.576633 | 5.1:+6402961 | None:intergenic |
GAAAGCTGCGCACAATTTGG+TGG | 0.579311 | 5.1:-6404649 | MS.gene21526:CDS |
CAGAGATGAAGACAATAATG+AGG | 0.584067 | 5.1:-6402101 | MS.gene21526:CDS |
CACTTGTAACTCCACAGTGA+TGG | 0.587666 | 5.1:+6406331 | None:intergenic |
GAGCTTGCATCAGGAGGCAA+AGG | 0.591960 | 5.1:+6402027 | None:intergenic |
ATTTAAATCTACAAAACACA+AGG | 0.595356 | 5.1:+6403194 | None:intergenic |
GATGCAGAGATGTAAAAGTA+GGG | 0.597722 | 5.1:-6402524 | MS.gene21526:intron |
GTCTCTGTCGAGATAGGACA+TGG | 0.606101 | 5.1:-6403616 | MS.gene21526:CDS |
ATACTGCTAAACTTCCTGAT+GGG | 0.607368 | 5.1:-6402951 | MS.gene21526:intron |
AGCTCGCGACGAAGAGTCTG+AGG | 0.607702 | 5.1:-6403563 | MS.gene21526:CDS |
TATGCAATGCATGTGGTTCG+CGG | 0.611941 | 5.1:-6404933 | MS.gene21526:CDS |
CCTATCTCGACAGAGACCAT+TGG | 0.618260 | 5.1:+6403622 | None:intergenic |
GTAACTCCACAGTGATGGCA+AGG | 0.624432 | 5.1:+6406336 | None:intergenic |
CTTGCATCTGATTACAACCA+GGG | 0.633133 | 5.1:-6404739 | MS.gene21526:CDS |
CACTATAATGTAGTATCTGG+AGG | 0.635640 | 5.1:-6404763 | MS.gene21526:CDS |
AGGGTGAATCATGATTTCCA+AGG | 0.637136 | 5.1:+6403214 | None:intergenic |
AAGTGTGAGCTTGCATCAGG+AGG | 0.639748 | 5.1:+6402021 | None:intergenic |
ACTTGCATCTGATTACAACC+AGG | 0.649715 | 5.1:-6404740 | MS.gene21526:CDS |
GTTGTCAAAGTCGAAATGGG+TGG | 0.657876 | 5.1:-6402651 | MS.gene21526:CDS |
ATCCGGCAAAGAGATATCAA+AGG | 0.663680 | 5.1:+6402721 | None:intergenic |
CCAATACTATGCAATGCATG+TGG | 0.675078 | 5.1:-6404940 | MS.gene21526:CDS |
GGTGGCCCATTGCGCCAAAG+TGG | 0.675260 | 5.1:+6404970 | None:intergenic |
TTTAAATCTACAAAACACAA+GGG | 0.680510 | 5.1:+6403195 | None:intergenic |
GGGTGCAGAAGTTCTGCCTG+CGG | 0.683148 | 5.1:+6401922 | None:intergenic |
GGTGGAACACTATCATAACA+AGG | 0.694043 | 5.1:-6402633 | MS.gene21526:intron |
GCAATGCATGTGGTTCGCGG+TGG | 0.695010 | 5.1:-6404930 | MS.gene21526:CDS |
CAAGGACCTTGCCATCACTG+TGG | 0.727560 | 5.1:-6406342 | MS.gene21526:CDS |
TAAACTATGAAGAATTTACG+AGG | 0.736561 | 5.1:-6403026 | MS.gene21526:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAAAATTATAAATATATAT+TGG | + | chr5.1:6401911-6401930 | None:intergenic | 0.0% |
!! | AATATAAACTAAGAAAAATT+AGG | - | chr5.1:6401982-6402001 | MS.gene21526:CDS | 10.0% |
!!! | TGTTGTATAATTTTTTTTAA+AGG | + | chr5.1:6405300-6405319 | None:intergenic | 10.0% |
!! | ATTTACAATAAAATGTTAGT+AGG | - | chr5.1:6405086-6405105 | MS.gene21526:intron | 15.0% |
!!! | AACATAATTGTTATTATGTT+TGG | - | chr5.1:6405143-6405162 | MS.gene21526:intron | 15.0% |
!!! | TAAAATACATACTATTTTGA+AGG | + | chr5.1:6403661-6403680 | None:intergenic | 15.0% |
!!! | TAAATTTGCTGATATTATTT+TGG | - | chr5.1:6404883-6404902 | MS.gene21526:CDS | 15.0% |
!! | AAAAAATGGATAGTGAAATA+AGG | - | chr5.1:6403694-6403713 | MS.gene21526:CDS | 20.0% |
!! | AAGAAGATATTGATACAAAA+GGG | + | chr5.1:6402994-6403013 | None:intergenic | 20.0% |
!! | AATGAAAAAAAGAATTGAAG+AGG | - | chr5.1:6404057-6404076 | MS.gene21526:intron | 20.0% |
!! | ACAAATCATATATGTAAACA+CGG | + | chr5.1:6404223-6404242 | None:intergenic | 20.0% |
!! | ATCATTGATGAATAAATCAA+TGG | + | chr5.1:6405944-6405963 | None:intergenic | 20.0% |
!! | ATTTAAATCTACAAAACACA+AGG | + | chr5.1:6405012-6405031 | None:intergenic | 20.0% |
!! | ATTTATACAGATTCAAAAGT+AGG | - | chr5.1:6402027-6402046 | MS.gene21526:CDS | 20.0% |
!! | TTTAAATCTACAAAACACAA+GGG | + | chr5.1:6405011-6405030 | None:intergenic | 20.0% |
!! | TTTGTGAAAAAACAAAAGAT+AGG | + | chr5.1:6404337-6404356 | None:intergenic | 20.0% |
!!! | AATTGTTATTATGTTTGGTT+AGG | - | chr5.1:6405148-6405167 | MS.gene21526:intron | 20.0% |
!!! | ATTCATTTTTGTCTTCTAAA+AGG | - | chr5.1:6402550-6402569 | MS.gene21526:intron | 20.0% |
!!! | ATTTATTGTTTGGTTGATTT+AGG | - | chr5.1:6404371-6404390 | MS.gene21526:intron | 20.0% |
!!! | CACAGATTTATAAAACTTTT+TGG | + | chr5.1:6402707-6402726 | None:intergenic | 20.0% |
!!! | CATATAAGAATCAACTTTTT+TGG | + | chr5.1:6404810-6404829 | None:intergenic | 20.0% |
!!! | TTCATGTATTCTTATTTCAA+TGG | - | chr5.1:6402483-6402502 | MS.gene21526:CDS | 20.0% |
! | AACTAACTGGAAAAAGATTA+AGG | - | chr5.1:6402187-6402206 | MS.gene21526:intron | 25.0% |
! | ACAATGATTCATTATCTATG+CGG | - | chr5.1:6405906-6405925 | MS.gene21526:intron | 25.0% |
! | ACTAACTGGAAAAAGATTAA+GGG | - | chr5.1:6402188-6402207 | MS.gene21526:intron | 25.0% |
! | AGCGTATTCAAATGTTAATT+AGG | + | chr5.1:6403990-6404009 | None:intergenic | 25.0% |
! | ATGATGTTGTATTAAGCATT+TGG | - | chr5.1:6402054-6402073 | MS.gene21526:CDS | 25.0% |
! | ATTTCAATGGAAATGAGATA+AGG | - | chr5.1:6402496-6402515 | MS.gene21526:CDS | 25.0% |
! | CAAGAAGATATTGATACAAA+AGG | + | chr5.1:6402995-6403014 | None:intergenic | 25.0% |
! | CATTAACATTTAACAGTATC+AGG | + | chr5.1:6402436-6402455 | None:intergenic | 25.0% |
! | CTTTATATTACGTTGAAATG+CGG | - | chr5.1:6402291-6402310 | MS.gene21526:intron | 25.0% |
! | GACAAAAATGAATCAAATTG+TGG | + | chr5.1:6402543-6402562 | None:intergenic | 25.0% |
! | GTAAAAAATTTCTTGATCAG+AGG | + | chr5.1:6404268-6404287 | None:intergenic | 25.0% |
! | TAAACTATGAAGAATTTACG+AGG | - | chr5.1:6405177-6405196 | MS.gene21526:intron | 25.0% |
! | TAACAAATCGTAAATCTTGA+TGG | + | chr5.1:6405373-6405392 | None:intergenic | 25.0% |
! | TATATCAACCACATTTATTG+CGG | - | chr5.1:6404114-6404133 | MS.gene21526:intron | 25.0% |
! | TATTAATTGTCCAACTTTGA+AGG | + | chr5.1:6405875-6405894 | None:intergenic | 25.0% |
! | TCATGAAAACATGTTATCTA+AGG | + | chr5.1:6404190-6404209 | None:intergenic | 25.0% |
! | TGTTAATTAGGTTTATCTCA+TGG | + | chr5.1:6403978-6403997 | None:intergenic | 25.0% |
! | TTCATAACTGATTAAAGCAT+TGG | - | chr5.1:6403630-6403649 | MS.gene21526:CDS | 25.0% |
! | TTCTTTCACTAGAATAAACA+TGG | - | chr5.1:6404746-6404765 | MS.gene21526:CDS | 25.0% |
! | TTTCAATGGAAATGAGATAA+GGG | - | chr5.1:6402497-6402516 | MS.gene21526:CDS | 25.0% |
!! | AGTCTTTGTGATAATTCTTT+TGG | + | chr5.1:6406132-6406151 | None:intergenic | 25.0% |
!! | ATCATACATGAGACTTTTTA+AGG | - | chr5.1:6405329-6405348 | MS.gene21526:intron | 25.0% |
!! | GAATATTGTTTGTTAGAACT+TGG | - | chr5.1:6403144-6403163 | MS.gene21526:intron | 25.0% |
!! | GTCTTTGTGATAATTCTTTT+GGG | + | chr5.1:6406131-6406150 | None:intergenic | 25.0% |
!! | TCATAACTGATTAAAGCATT+GGG | - | chr5.1:6403631-6403650 | MS.gene21526:CDS | 25.0% |
!! | TCATACATGAGACTTTTTAA+GGG | - | chr5.1:6405330-6405349 | MS.gene21526:intron | 25.0% |
!! | TCTTTGTGATAATTCTTTTG+GGG | + | chr5.1:6406130-6406149 | None:intergenic | 25.0% |
!!! | ACATGTTCATAAGTTGTTTT+CGG | + | chr5.1:6403902-6403921 | None:intergenic | 25.0% |
!!! | AGATTCTTTTAACTTTGTTG+AGG | - | chr5.1:6406208-6406227 | MS.gene21526:intron | 25.0% |
!!! | ATGGTTTAAATTTTTTGTCG+CGG | - | chr5.1:6402249-6402268 | MS.gene21526:intron | 25.0% |
!!! | ATTCTTTTTTTCATTGTCGA+TGG | + | chr5.1:6404052-6404071 | None:intergenic | 25.0% |
!!! | TGATGATTTTGATGATCAAA+GGG | - | chr5.1:6403349-6403368 | MS.gene21526:intron | 25.0% |
!!! | TTATTTTTTTGCGTGTAACT+TGG | - | chr5.1:6404841-6404860 | MS.gene21526:CDS | 25.0% |
AACAAAGATGTATCTCAGAT+TGG | + | chr5.1:6403178-6403197 | None:intergenic | 30.0% | |
AACCACTATAATGTAGTATC+TGG | - | chr5.1:6403437-6403456 | MS.gene21526:intron | 30.0% | |
AGCTCTCTTTCATTTGATAA+TGG | - | chr5.1:6404665-6404684 | MS.gene21526:CDS | 30.0% | |
ATCATACGTAACTGTTTAAG+TGG | - | chr5.1:6403052-6403071 | MS.gene21526:intron | 30.0% | |
ATGTTAGCACAGTCAAAAAA+TGG | - | chr5.1:6403680-6403699 | MS.gene21526:CDS | 30.0% | |
ATGTTCAATACTCTTAGACT+TGG | - | chr5.1:6402871-6402890 | MS.gene21526:intron | 30.0% | |
ATTATTGAAGTTTCTTCCTG+TGG | - | chr5.1:6405226-6405245 | MS.gene21526:intron | 30.0% | |
CATATATGTAAACACGGAAT+TGG | + | chr5.1:6404217-6404236 | None:intergenic | 30.0% | |
CGCATTTCAACGTAATATAA+AGG | + | chr5.1:6402293-6402312 | None:intergenic | 30.0% | |
CTAACTGGAAAAAGATTAAG+GGG | - | chr5.1:6402189-6402208 | MS.gene21526:intron | 30.0% | |
GATTCCTCAGTTAAATCATA+AGG | + | chr5.1:6406056-6406075 | None:intergenic | 30.0% | |
TAAAAGTAGGGCTGAAAAAT+CGG | - | chr5.1:6405691-6405710 | MS.gene21526:intron | 30.0% | |
TACAATACTGATCACCTTAA+TGG | - | chr5.1:6402745-6402764 | MS.gene21526:CDS | 30.0% | |
TACTCCTTATGATTTAACTG+AGG | - | chr5.1:6406049-6406068 | MS.gene21526:intron | 30.0% | |
TAGTAGAAGTAGTTCCATTA+AGG | + | chr5.1:6402762-6402781 | None:intergenic | 30.0% | |
TAGTTCAATACTTGATTGTG+AGG | + | chr5.1:6403019-6403038 | None:intergenic | 30.0% | |
TATTCTCCTAGTTGAATTCT+TGG | - | chr5.1:6405040-6405059 | MS.gene21526:intron | 30.0% | |
TGCGGAAAAGAATTATTAGA+AGG | + | chr5.1:6406266-6406285 | None:intergenic | 30.0% | |
TGTAATCTGTACATCAAAAC+TGG | - | chr5.1:6404308-6404327 | MS.gene21526:intron | 30.0% | |
TTATATCAGTGTTTGGACTT+TGG | + | chr5.1:6403946-6403965 | None:intergenic | 30.0% | |
TTCAATGGAAATGAGATAAG+GGG | - | chr5.1:6402498-6402517 | MS.gene21526:CDS | 30.0% | |
TTGATATAACAAGAGCTTCA+TGG | + | chr5.1:6404102-6404121 | None:intergenic | 30.0% | |
! | ATATCTGAGTTTTGCTTCTA+GGG | - | chr5.1:6403779-6403798 | MS.gene21526:CDS | 30.0% |
! | CTTTTATATGCTTTGCGATT+TGG | - | chr5.1:6403105-6403124 | MS.gene21526:intron | 30.0% |
! | GTTTTTCTGAATCTTCTGAT+GGG | - | chr5.1:6404534-6404553 | MS.gene21526:intron | 30.0% |
! | TATCTTCATCAAAAGCCTTT+TGG | + | chr5.1:6403493-6403512 | None:intergenic | 30.0% |
! | TATTGTTTGTTAGAACTTGG+CGG | - | chr5.1:6403147-6403166 | MS.gene21526:intron | 30.0% |
! | TCTTCGCATAGTTTAAAATC+CGG | + | chr5.1:6402410-6402429 | None:intergenic | 30.0% |
! | TGTTTTTCTGAATCTTCTGA+TGG | - | chr5.1:6404533-6404552 | MS.gene21526:intron | 30.0% |
! | TTCTAATAATTCTTTTCCGC+AGG | - | chr5.1:6406265-6406284 | MS.gene21526:intron | 30.0% |
! | TTTAAGATTTAACGCTAACC+TGG | + | chr5.1:6405797-6405816 | None:intergenic | 30.0% |
! | TTTGTTGCATTGATAGGAAA+TGG | - | chr5.1:6402230-6402249 | MS.gene21526:intron | 30.0% |
! | TTTTTCTGAATCTTCTGATG+GGG | - | chr5.1:6404535-6404554 | MS.gene21526:intron | 30.0% |
!! | CACAATCAAGTATTGAACTA+TGG | - | chr5.1:6403019-6403038 | MS.gene21526:CDS | 30.0% |
!! | CATACATGAGACTTTTTAAG+GGG | - | chr5.1:6405331-6405350 | MS.gene21526:intron | 30.0% |
!! | CTGATGATTTTGATGATCAA+AGG | - | chr5.1:6403348-6403367 | MS.gene21526:intron | 30.0% |
!! | TTTTTGTTTCACTGTGTTTC+TGG | - | chr5.1:6402123-6402142 | MS.gene21526:intron | 30.0% |
AAGAATATGCGTCACTCATT+GGG | + | chr5.1:6404697-6404716 | None:intergenic | 35.0% | |
ACAATTTCTCAATGTGTCAG+AGG | - | chr5.1:6402608-6402627 | MS.gene21526:intron | 35.0% | |
AGAACTTTCCGCAATAAATG+TGG | + | chr5.1:6404125-6404144 | None:intergenic | 35.0% | |
AGTGACGCATATTCTTATTC+TGG | - | chr5.1:6404701-6404720 | MS.gene21526:CDS | 35.0% | |
ATACTGCTAAACTTCCTGAT+GGG | - | chr5.1:6405252-6405271 | MS.gene21526:intron | 35.0% | |
ATGAGTAATCGATCAAGTTC+AGG | - | chr5.1:6403512-6403531 | MS.gene21526:CDS | 35.0% | |
ATGAGTTGTCAAAGTCGAAA+TGG | - | chr5.1:6405548-6405567 | MS.gene21526:intron | 35.0% | |
ATTACACACCTTTACATGCT+CGG | - | chr5.1:6403318-6403337 | MS.gene21526:intron | 35.0% | |
CAAGCACTTATATCAGTGTT+TGG | + | chr5.1:6403953-6403972 | None:intergenic | 35.0% | |
CACTATAATGTAGTATCTGG+AGG | - | chr5.1:6403440-6403459 | MS.gene21526:intron | 35.0% | |
CAGAGATGAAGACAATAATG+AGG | - | chr5.1:6406102-6406121 | MS.gene21526:intron | 35.0% | |
CTAAGAACATATGTATCCTG+TGG | + | chr5.1:6402942-6402961 | None:intergenic | 35.0% | |
CTCCAGATACTACATTATAG+TGG | + | chr5.1:6403442-6403461 | None:intergenic | 35.0% | |
GAAATGAGATAAGGGGATTA+TGG | - | chr5.1:6402505-6402524 | MS.gene21526:CDS | 35.0% | |
GATGCAGAGATGTAAAAGTA+GGG | - | chr5.1:6405679-6405698 | MS.gene21526:intron | 35.0% | |
GCTTGTTCTGTGTAATACTA+TGG | - | chr5.1:6402004-6402023 | MS.gene21526:CDS | 35.0% | |
TAAGAATATGCGTCACTCAT+TGG | + | chr5.1:6404698-6404717 | None:intergenic | 35.0% | |
TCAAAAAAGAGGACATGTGT+TGG | - | chr5.1:6404437-6404456 | MS.gene21526:intron | 35.0% | |
TCTCTTCACATTTGCAACAT+TGG | + | chr5.1:6405747-6405766 | None:intergenic | 35.0% | |
TGAAGGAGTCATATCCTAAT+TGG | + | chr5.1:6405858-6405877 | None:intergenic | 35.0% | |
TGAGTTGTCAAAGTCGAAAT+GGG | - | chr5.1:6405549-6405568 | MS.gene21526:intron | 35.0% | |
TTTCATTAGCCAGAAAGCAA+TGG | + | chr5.1:6402677-6402696 | None:intergenic | 35.0% | |
! | AAGAAATTGTGCTGCTATTC+AGG | + | chr5.1:6403735-6403754 | None:intergenic | 35.0% |
! | AAGAAGTGAACTTGCTCAAA+CGG | - | chr5.1:6403408-6403427 | MS.gene21526:intron | 35.0% |
! | CAGGTTTGTTCTGATTTCAT+TGG | - | chr5.1:6403597-6403616 | MS.gene21526:CDS | 35.0% |
! | GATATCTGAGTTTTGCTTCT+AGG | - | chr5.1:6403778-6403797 | MS.gene21526:CDS | 35.0% |
! | GCATTTGGAATTGAAAGTTG+TGG | - | chr5.1:6402069-6402088 | MS.gene21526:CDS | 35.0% |
! | TCTGAGACAATGTAACTAAC+TGG | - | chr5.1:6402174-6402193 | MS.gene21526:intron | 35.0% |
! | TGCTTTGCGATTTGGATTAT+CGG | - | chr5.1:6403113-6403132 | MS.gene21526:intron | 35.0% |
! | TTAAGGGGAGTTGATTGAAT+TGG | - | chr5.1:6402204-6402223 | MS.gene21526:intron | 35.0% |
! | TTATGAAAGTGAAGCACCAA+TGG | - | chr5.1:6404565-6404584 | MS.gene21526:intron | 35.0% |
!! | CTACTTTTACATCTCTGCAT+CGG | + | chr5.1:6405680-6405699 | None:intergenic | 35.0% |
!! | GAAAGCTTGCCTTTTAAGAA+CGG | + | chr5.1:6404729-6404748 | None:intergenic | 35.0% |
!! | TGGTGATTTGTTGCATTGAT+AGG | - | chr5.1:6402224-6402243 | MS.gene21526:intron | 35.0% |
!! | TGTTTAAGTGGTTTGTTGTG+CGG | - | chr5.1:6403064-6403083 | MS.gene21526:intron | 35.0% |
!!! | ACACATGTCCTCTTTTTTGA+AGG | + | chr5.1:6404437-6404456 | None:intergenic | 35.0% |
AACCGCAATTATGACAGCAT+CGG | + | chr5.1:6402327-6402346 | None:intergenic | 40.0% | |
AATGGAGCAAGACATGATTG+AGG | + | chr5.1:6402659-6402678 | None:intergenic | 40.0% | |
ACAGATGCTAGTGATCTAAC+AGG | - | chr5.1:6403578-6403597 | MS.gene21526:CDS | 40.0% | |
ACTTGCATCTGATTACAACC+AGG | - | chr5.1:6403463-6403482 | MS.gene21526:intron | 40.0% | |
AGATCCTATGCGTGATTACA+TGG | + | chr5.1:6404024-6404043 | None:intergenic | 40.0% | |
AGCAGAAATCAGAACTTTCC+AGG | - | chr5.1:6405776-6405795 | MS.gene21526:intron | 40.0% | |
AGGGTGAATCATGATTTCCA+AGG | + | chr5.1:6404992-6405011 | None:intergenic | 40.0% | |
AGTGCTCATTCGCTATTCTA+AGG | - | chr5.1:6403827-6403846 | MS.gene21526:intron | 40.0% | |
AGTTTAGCAGTATCAACCAC+AGG | + | chr5.1:6405245-6405264 | None:intergenic | 40.0% | |
ATCCGGCAAAGAGATATCAA+AGG | + | chr5.1:6405485-6405504 | None:intergenic | 40.0% | |
ATGGAGCAAGACATGATTGA+GGG | + | chr5.1:6402658-6402677 | None:intergenic | 40.0% | |
CAACTGCCAAGAATTCAACT+AGG | + | chr5.1:6405049-6405068 | None:intergenic | 40.0% | |
CAACTGCGAACGCAATATAA+CGG | + | chr5.1:6402377-6402396 | None:intergenic | 40.0% | |
CCAATACTATGCAATGCATG+TGG | - | chr5.1:6403263-6403282 | MS.gene21526:intron | 40.0% | |
CCACATGCATTGCATAGTAT+TGG | + | chr5.1:6403266-6403285 | None:intergenic | 40.0% | |
CGATGCAGAGATGTAAAAGT+AGG | - | chr5.1:6405678-6405697 | MS.gene21526:intron | 40.0% | |
CTAGTTGAATTCTTGGCAGT+TGG | - | chr5.1:6405047-6405066 | MS.gene21526:intron | 40.0% | |
CTTGCATCTGATTACAACCA+GGG | - | chr5.1:6403464-6403483 | MS.gene21526:intron | 40.0% | |
GAGCACCAAAGTATGAAGTT+GGG | + | chr5.1:6406304-6406323 | None:intergenic | 40.0% | |
GAGTAGAATTCTAACCCATC+AGG | + | chr5.1:6405269-6405288 | None:intergenic | 40.0% | |
GATACTGCTAAACTTCCTGA+TGG | - | chr5.1:6405251-6405270 | MS.gene21526:intron | 40.0% | |
GATCCTATGCGTGATTACAT+GGG | + | chr5.1:6404023-6404042 | None:intergenic | 40.0% | |
GGATATGACTCCTTCAAAGT+TGG | - | chr5.1:6405862-6405881 | MS.gene21526:intron | 40.0% | |
GGTGGAACACTATCATAACA+AGG | - | chr5.1:6405570-6405589 | MS.gene21526:intron | 40.0% | |
TGAGCACCAAAGTATGAAGT+TGG | + | chr5.1:6406305-6406324 | None:intergenic | 40.0% | |
TTACAACCAGGGATTCCAAA+AGG | - | chr5.1:6403475-6403494 | MS.gene21526:intron | 40.0% | |
TTACACACCTTTACATGCTC+GGG | - | chr5.1:6403319-6403338 | MS.gene21526:intron | 40.0% | |
TTATATTGCGTTCGCAGTTG+CGG | - | chr5.1:6402377-6402396 | MS.gene21526:intron | 40.0% | |
TTTCAGCAGCTTCTTGCAAA+AGG | - | chr5.1:6405457-6405476 | MS.gene21526:intron | 40.0% | |
! | CTGGAAAGAGTACAAATCCT+TGG | - | chr5.1:6404972-6404991 | MS.gene21526:CDS | 40.0% |
! | GCAATCAATCTTTTCACCAC+AGG | - | chr5.1:6402923-6402942 | MS.gene21526:intron | 40.0% |
! | GGCAAAGGAAATAGGCTTTT+TGG | + | chr5.1:6406164-6406183 | None:intergenic | 40.0% |
! | TGACAATTGAGCATTGCAAC+AGG | - | chr5.1:6403206-6403225 | MS.gene21526:CDS | 40.0% |
! | TTGATGATCAAAGGGCTTCA+AGG | - | chr5.1:6403357-6403376 | MS.gene21526:intron | 40.0% |
!! | CAGTCTTCAGGTTTTACATC+CGG | + | chr5.1:6405502-6405521 | None:intergenic | 40.0% |
!! | GACATGGAAGTGTTCTCATT+AGG | - | chr5.1:6404603-6404622 | MS.gene21526:intron | 40.0% |
!! | TTGCATAGTATTGGCTTCTC+TGG | + | chr5.1:6403257-6403276 | None:intergenic | 40.0% |
!! | TTGTTGTTTGTGCAGCCTTA+AGG | - | chr5.1:6405393-6405412 | MS.gene21526:intron | 40.0% |
!!! | CTCTTTTTTGAAGGCACTGT+GGG | + | chr5.1:6404428-6404447 | None:intergenic | 40.0% |
ACCAAATTGTGCGCAGCTTT+CGG | + | chr5.1:6403555-6403574 | None:intergenic | 45.0% | |
AGAAGAGACAAAGTGCGATG+CGG | - | chr5.1:6404906-6404925 | MS.gene21526:CDS | 45.0% | |
AGCCGATGCTGTCATAATTG+CGG | - | chr5.1:6402322-6402341 | MS.gene21526:intron | 45.0% | |
AGCTACCGAACATGACCTTA+AGG | + | chr5.1:6405411-6405430 | None:intergenic | 45.0% | |
ATTCTGGCGCCGTTCTTAAA+AGG | - | chr5.1:6404717-6404736 | MS.gene21526:CDS | 45.0% | |
CACTTGTAACTCCACAGTGA+TGG | + | chr5.1:6401875-6401894 | None:intergenic | 45.0% | |
CATCAGGAGGCAAAGGAAAT+AGG | + | chr5.1:6406172-6406191 | None:intergenic | 45.0% | |
CCACAGTGCCTTCAAAAAAG+AGG | - | chr5.1:6404426-6404445 | MS.gene21526:intron | 45.0% | |
CGCCTTTGATATCTCTTTGC+CGG | - | chr5.1:6405480-6405499 | MS.gene21526:intron | 45.0% | |
CTCAATGTGTCAGAGGATCT+TGG | - | chr5.1:6402615-6402634 | MS.gene21526:intron | 45.0% | |
CTGCACCCAACTTCATACTT+TGG | - | chr5.1:6406296-6406315 | MS.gene21526:intron | 45.0% | |
GCTGAAAAATCGGATGTTCC+AGG | - | chr5.1:6405701-6405720 | MS.gene21526:intron | 45.0% | |
GTGAGCTTCTCAACAGAAGA+TGG | + | chr5.1:6404476-6404495 | None:intergenic | 45.0% | |
GTTCGGTAGCTCTCAATTCA+AGG | - | chr5.1:6405420-6405439 | MS.gene21526:intron | 45.0% | |
GTTGTCAAAGTCGAAATGGG+TGG | - | chr5.1:6405552-6405571 | MS.gene21526:intron | 45.0% | |
TATGCAATGCATGTGGTTCG+CGG | - | chr5.1:6403270-6403289 | MS.gene21526:intron | 45.0% | |
TGCAGCCTTAAGGTCATGTT+CGG | - | chr5.1:6405403-6405422 | MS.gene21526:intron | 45.0% | |
TGTCTTGCTCCATTGCTTTC+TGG | - | chr5.1:6402665-6402684 | MS.gene21526:CDS | 45.0% | |
TTCAAAGTCTCGCAGTCTTC+AGG | + | chr5.1:6405514-6405533 | None:intergenic | 45.0% | |
TTTCAGTGACAAGTCTCAGC+TGG | - | chr5.1:6404953-6404972 | MS.gene21526:CDS | 45.0% | |
! | ACATCTCTGCATCGGTAGAA+GGG | + | chr5.1:6405672-6405691 | None:intergenic | 45.0% |
! | TACATCTCTGCATCGGTAGA+AGG | + | chr5.1:6405673-6405692 | None:intergenic | 45.0% |
! | TTGCGGTTGTGATGATGCTA+TGG | - | chr5.1:6402339-6402358 | MS.gene21526:intron | 45.0% |
!! | CATAGTATTGGCTTCTCTGG+TGG | + | chr5.1:6403254-6403273 | None:intergenic | 45.0% |
!!! | CAAAAGCCTTTTGGAATCCC+TGG | + | chr5.1:6403484-6403503 | None:intergenic | 45.0% |
!!! | CCTCTTTTTTGAAGGCACTG+TGG | + | chr5.1:6404429-6404448 | None:intergenic | 45.0% |
!!! | TTTAATTTTAATTTATTGTT+TGG | - | chr5.1:6404361-6404380 | MS.gene21526:intron | 5.0% |
AAGTGTGAGCTTGCATCAGG+AGG | + | chr5.1:6406185-6406204 | None:intergenic | 50.0% | |
ACGCCCATGTAATCACGCAT+AGG | - | chr5.1:6404017-6404036 | MS.gene21526:intron | 50.0% | |
AGCAAGTGTGAGCTTGCATC+AGG | + | chr5.1:6406188-6406207 | None:intergenic | 50.0% | |
CCAATGGTCTCTGTCGAGAT+AGG | - | chr5.1:6404581-6404600 | MS.gene21526:intron | 50.0% | |
CCTATCTCGACAGAGACCAT+TGG | + | chr5.1:6404584-6404603 | None:intergenic | 50.0% | |
GAAAGCTGCGCACAATTTGG+TGG | - | chr5.1:6403554-6403573 | MS.gene21526:CDS | 50.0% | |
GATGCTATACCAGCAGATCC+TGG | + | chr5.1:6405722-6405741 | None:intergenic | 50.0% | |
GTAACTCCACAGTGATGGCA+AGG | + | chr5.1:6401870-6401889 | None:intergenic | 50.0% | |
GTCTCTGTCGAGATAGGACA+TGG | - | chr5.1:6404587-6404606 | MS.gene21526:intron | 50.0% | |
GTTTCAGCCCGAGCATGTAA+AGG | + | chr5.1:6403329-6403348 | None:intergenic | 50.0% | |
TCCGAAAGCTGCGCACAATT+TGG | - | chr5.1:6403551-6403570 | MS.gene21526:CDS | 50.0% | |
TCGTCGCGAGCTACATAACT+AGG | + | chr5.1:6404632-6404651 | None:intergenic | 50.0% | |
TGCGTGATTACATGGGCGTT+TGG | + | chr5.1:6404016-6404035 | None:intergenic | 50.0% | |
TGCTGAGCTACTACTAGTGC+TGG | + | chr5.1:6406330-6406349 | None:intergenic | 50.0% | |
TTGCAACAGGCACACCACTT+TGG | - | chr5.1:6403219-6403238 | MS.gene21526:CDS | 50.0% | |
! | TTTAGGACCTGCTCAGTCAG+TGG | - | chr5.1:6404388-6404407 | MS.gene21526:intron | 50.0% |
!!! | TTTTGAAGGCACTGTGGGAG+TGG | + | chr5.1:6404423-6404442 | None:intergenic | 50.0% |
ACCTGCTCAGTCAGTGGTCT+GGG | - | chr5.1:6404394-6404413 | MS.gene21526:intron | 55.0% | |
CAAGGACCTTGCCATCACTG+TGG | - | chr5.1:6401861-6401880 | MS.gene21526:CDS | 55.0% | |
GAGCTTGCATCAGGAGGCAA+AGG | + | chr5.1:6406179-6406198 | None:intergenic | 55.0% | |
GCACACCACTTTGGCGCAAT+GGG | - | chr5.1:6403228-6403247 | MS.gene21526:CDS | 55.0% | |
TCGGATGTTCCAGGATCTGC+TGG | - | chr5.1:6405710-6405729 | MS.gene21526:intron | 55.0% | |
AGCTCGCGACGAAGAGTCTG+AGG | - | chr5.1:6404640-6404659 | MS.gene21526:CDS | 60.0% | |
ATGCATGTGGTTCGCGGTGG+AGG | - | chr5.1:6403276-6403295 | MS.gene21526:intron | 60.0% | |
GACCTGCTCAGTCAGTGGTC+TGG | - | chr5.1:6404393-6404412 | MS.gene21526:intron | 60.0% | |
GCAATGCATGTGGTTCGCGG+TGG | - | chr5.1:6403273-6403292 | MS.gene21526:intron | 60.0% | |
GGCACACCACTTTGGCGCAA+TGG | - | chr5.1:6403227-6403246 | MS.gene21526:CDS | 60.0% | |
GGGTGCAGAAGTTCTGCCTG+CGG | + | chr5.1:6406284-6406303 | None:intergenic | 60.0% | |
GGTTCGCGGTGGAGGACAAA+GGG | - | chr5.1:6403284-6403303 | MS.gene21526:intron | 60.0% | |
TCGCAGTTGCGGTTGTGGAC+CGG | - | chr5.1:6402388-6402407 | MS.gene21526:intron | 60.0% | |
TGCGTTCGCAGTTGCGGTTG+TGG | - | chr5.1:6402383-6402402 | MS.gene21526:intron | 60.0% | |
TGGTTCGCGGTGGAGGACAA+AGG | - | chr5.1:6403283-6403302 | MS.gene21526:intron | 60.0% | |
! | TCCCAGACCACTGACTGAGC+AGG | + | chr5.1:6404398-6404417 | None:intergenic | 60.0% |
GGTGGCCCATTGCGCCAAAG+TGG | + | chr5.1:6403236-6403255 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.1 | gene | 6401852 | 6406373 | 6401852 | ID=MS.gene21526 |
chr5.1 | mRNA | 6401852 | 6406373 | 6401852 | ID=MS.gene21526.t1;Parent=MS.gene21526 |
chr5.1 | exon | 6406334 | 6406373 | 6406334 | ID=MS.gene21526.t1.exon1;Parent=MS.gene21526.t1 |
chr5.1 | CDS | 6406334 | 6406373 | 6406334 | ID=cds.MS.gene21526.t1;Parent=MS.gene21526.t1 |
chr5.1 | exon | 6404626 | 6404997 | 6404626 | ID=MS.gene21526.t1.exon2;Parent=MS.gene21526.t1 |
chr5.1 | CDS | 6404626 | 6404997 | 6404626 | ID=cds.MS.gene21526.t1;Parent=MS.gene21526.t1 |
chr5.1 | exon | 6403498 | 6403832 | 6403498 | ID=MS.gene21526.t1.exon3;Parent=MS.gene21526.t1 |
chr5.1 | CDS | 6403498 | 6403832 | 6403498 | ID=cds.MS.gene21526.t1;Parent=MS.gene21526.t1 |
chr5.1 | exon | 6403194 | 6403259 | 6403194 | ID=MS.gene21526.t1.exon4;Parent=MS.gene21526.t1 |
chr5.1 | CDS | 6403194 | 6403259 | 6403194 | ID=cds.MS.gene21526.t1;Parent=MS.gene21526.t1 |
chr5.1 | exon | 6402952 | 6403055 | 6402952 | ID=MS.gene21526.t1.exon5;Parent=MS.gene21526.t1 |
chr5.1 | CDS | 6402952 | 6403055 | 6402952 | ID=cds.MS.gene21526.t1;Parent=MS.gene21526.t1 |
chr5.1 | exon | 6402634 | 6402817 | 6402634 | ID=MS.gene21526.t1.exon6;Parent=MS.gene21526.t1 |
chr5.1 | CDS | 6402634 | 6402817 | 6402634 | ID=cds.MS.gene21526.t1;Parent=MS.gene21526.t1 |
chr5.1 | exon | 6402428 | 6402539 | 6402428 | ID=MS.gene21526.t1.exon7;Parent=MS.gene21526.t1 |
chr5.1 | CDS | 6402428 | 6402539 | 6402428 | ID=cds.MS.gene21526.t1;Parent=MS.gene21526.t1 |
chr5.1 | exon | 6401852 | 6402120 | 6401852 | ID=MS.gene21526.t1.exon8;Parent=MS.gene21526.t1 |
chr5.1 | CDS | 6401852 | 6402120 | 6401852 | ID=cds.MS.gene21526.t1;Parent=MS.gene21526.t1 |
Gene Sequence |
Protein sequence |