Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21559.t1 | AES61869.1 | 73.9 | 157 | 17 | 2 | 1 | 145 | 1 | 145 | 7.50E-54 | 219.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21559.t1 | Q8W4H1 | 60.0 | 35 | 14 | 0 | 4 | 38 | 13 | 47 | 4.5e-07 | 55.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21559.t1 | G7I2W4 | 73.9 | 157 | 17 | 2 | 1 | 145 | 1 | 145 | 5.4e-54 | 219.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene21559.t1 | TF | C2C2-GATA |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21559.t1 | MTR_1g089830 | 75.159 | 157 | 15 | 2 | 1 | 145 | 1 | 145 | 6.31e-78 | 227 |
MS.gene21559.t1 | MTR_1g045040 | 71.014 | 138 | 33 | 1 | 1 | 138 | 1 | 131 | 9.73e-60 | 181 |
MS.gene21559.t1 | MTR_8g089170 | 42.667 | 150 | 67 | 5 | 3 | 134 | 4 | 152 | 4.95e-29 | 103 |
MS.gene21559.t1 | MTR_8g089130 | 39.610 | 154 | 74 | 4 | 3 | 137 | 4 | 157 | 3.60e-28 | 102 |
MS.gene21559.t1 | MTR_8g039350 | 77.273 | 44 | 10 | 0 | 3 | 46 | 14 | 57 | 3.67e-19 | 76.3 |
MS.gene21559.t1 | MTR_1g075130 | 66.216 | 74 | 21 | 1 | 67 | 140 | 14 | 83 | 5.18e-18 | 73.9 |
MS.gene21559.t1 | MTR_4g028990 | 43.956 | 91 | 48 | 2 | 49 | 137 | 7 | 96 | 2.92e-17 | 72.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 28 sgRNAs with CRISPR-Local
Find 141 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GGAGTTGGGTTTGAAAGCTT+TGG | 0.278312 | 1.1:+65750370 | None:intergenic |
GAGTTGGGTTTGAAAGCTTT+GGG | 0.313526 | 1.1:+65750371 | None:intergenic |
ATAGTCTTCAAGGGTTCCTT+TGG | 0.332237 | 1.1:+65750459 | None:intergenic |
TCAAACAACAAAATATTATC+TGG | 0.350768 | 1.1:+65748537 | None:intergenic |
CACAAGATTGGCTTCTCATA+TGG | 0.363409 | 1.1:+65750508 | None:intergenic |
TTTCAACAGAAACTAAAGTT+TGG | 0.373286 | 1.1:-65750540 | MS.gene21559:CDS |
ATACTTTGCTGAGCTATCTT+CGG | 0.400089 | 1.1:+65750433 | None:intergenic |
GACTATGAGGCCGACACTAA+TGG | 0.401191 | 1.1:-65748640 | MS.gene21559:CDS |
TACTTTGCTGAGCTATCTTC+GGG | 0.431538 | 1.1:+65750434 | None:intergenic |
CCAAGTAATGAGATCGGCCT+TGG | 0.442800 | 1.1:-65748495 | MS.gene21559:CDS |
CCACAGGCGTTACACAAGAT+TGG | 0.446240 | 1.1:+65750496 | None:intergenic |
GAAACTAAAGTTTGGCGTAA+AGG | 0.450000 | 1.1:-65750532 | MS.gene21559:CDS |
TCTTCGGGAGATAGTCTTCA+AGG | 0.462167 | 1.1:+65750449 | None:intergenic |
CCAAGGCCGATCTCATTACT+TGG | 0.469229 | 1.1:+65748495 | None:intergenic |
CGCCTGTGGATTGCATTTCA+AGG | 0.472275 | 1.1:-65750482 | MS.gene21559:CDS |
GGCCTTGAAATGCAATCCAC+AGG | 0.512475 | 1.1:+65750480 | None:intergenic |
GTCAGTGTCTCCATTAGTGT+CGG | 0.538511 | 1.1:+65748630 | None:intergenic |
AAGCTTTCAAACCCAACTCC+AGG | 0.571736 | 1.1:-65750367 | MS.gene21559:intron |
ATTAGTGTCGGCCTCATAGT+CGG | 0.574226 | 1.1:+65748642 | None:intergenic |
AGCTCAGCAAAGTATGTCAT+CGG | 0.576312 | 1.1:-65750425 | MS.gene21559:CDS |
AGAGGTCGGCACCGACTATG+AGG | 0.586753 | 1.1:-65748653 | MS.gene21559:CDS |
AATGGAGACACTGACACCAA+TGG | 0.595378 | 1.1:-65748622 | MS.gene21559:CDS |
TTTATACCAAGTAATGAGAT+CGG | 0.595926 | 1.1:-65748501 | MS.gene21559:CDS |
CCAATCTTGTGTAACGCCTG+TGG | 0.600058 | 1.1:-65750496 | MS.gene21559:CDS |
CTTCGGGAGATAGTCTTCAA+GGG | 0.601274 | 1.1:+65750450 | None:intergenic |
TCTTTAGAAGAGTGCAGCCA+AGG | 0.606342 | 1.1:+65748478 | None:intergenic |
GGATTGCATTTCAAGGCCAA+AGG | 0.606742 | 1.1:-65750475 | MS.gene21559:CDS |
GGAGACACTGACACCAATGG+AGG | 0.696756 | 1.1:-65748619 | MS.gene21559:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATATATTTTAAAAACTTTAG+CGG | + | chr1.1:65748777-65748796 | None:intergenic | 10.0% |
!! | ATAGAATCATCTTTAAATTA+TGG | + | chr1.1:65749396-65749415 | None:intergenic | 15.0% |
!! | TAATCATTTATTTGTATCAT+CGG | + | chr1.1:65750244-65750263 | None:intergenic | 15.0% |
!! | TCATATACAATACATATTAA+TGG | + | chr1.1:65750268-65750287 | None:intergenic | 15.0% |
!! | TTTAAGCTAATGATATTATA+AGG | - | chr1.1:65749606-65749625 | MS.gene21559:intron | 15.0% |
!!! | TTATAATATCATTAGCTTAA+AGG | + | chr1.1:65749607-65749626 | None:intergenic | 15.0% |
!! | ACAACTCATATATAAATGTT+AGG | + | chr1.1:65748948-65748967 | None:intergenic | 20.0% |
!! | ATCAATCAATGCATTATAAA+AGG | + | chr1.1:65748725-65748744 | None:intergenic | 20.0% |
!! | ATGCATTATAAAAGGAAAAA+TGG | + | chr1.1:65748717-65748736 | None:intergenic | 20.0% |
!! | CAACTCATATATAAATGTTA+GGG | + | chr1.1:65748947-65748966 | None:intergenic | 20.0% |
!! | GAAAAATGGATGATATAAAA+TGG | + | chr1.1:65748703-65748722 | None:intergenic | 20.0% |
!! | TCAAACAACAAAATATTATC+TGG | + | chr1.1:65750447-65750466 | None:intergenic | 20.0% |
!!! | AACAAAAACTTTTCAATCTA+TGG | - | chr1.1:65750391-65750410 | MS.gene21559:CDS | 20.0% |
!!! | AATAACTTCAGCTTTAAATT+TGG | + | chr1.1:65748670-65748689 | None:intergenic | 20.0% |
!!! | ACAAAAACTTTTCAATCTAT+GGG | - | chr1.1:65750392-65750411 | MS.gene21559:CDS | 20.0% |
!!! | CTTTAAATTTGGTGAAATAT+GGG | + | chr1.1:65748659-65748678 | None:intergenic | 20.0% |
! | AAATGGATGATATAAAATGG+AGG | + | chr1.1:65748700-65748719 | None:intergenic | 25.0% |
! | AATGGATGATATAAAATGGA+GGG | + | chr1.1:65748699-65748718 | None:intergenic | 25.0% |
! | ATAGTTTACATTTCCTTGTT+AGG | - | chr1.1:65749944-65749963 | MS.gene21559:intron | 25.0% |
! | ATTGTACGAATATTCTTAAC+GGG | - | chr1.1:65748891-65748910 | MS.gene21559:intron | 25.0% |
! | CATTGTACGAATATTCTTAA+CGG | - | chr1.1:65748890-65748909 | MS.gene21559:intron | 25.0% |
! | CGATTGAAAATGAAAATGAT+GGG | - | chr1.1:65748809-65748828 | MS.gene21559:intron | 25.0% |
! | CTTGACATTGAAAAAATATC+TGG | - | chr1.1:65748581-65748600 | MS.gene21559:CDS | 25.0% |
! | TATTTGTCTAACTTGAAACA+TGG | + | chr1.1:65749473-65749492 | None:intergenic | 25.0% |
! | TCGATTGAAAATGAAAATGA+TGG | - | chr1.1:65748808-65748827 | MS.gene21559:intron | 25.0% |
! | TCGTAATTTCTTTGATGTTA+TGG | - | chr1.1:65749735-65749754 | MS.gene21559:intron | 25.0% |
! | TTTATACCAAGTAATGAGAT+CGG | - | chr1.1:65750480-65750499 | MS.gene21559:CDS | 25.0% |
! | TTTCAACAGAAACTAAAGTT+TGG | - | chr1.1:65748441-65748460 | MS.gene21559:CDS | 25.0% |
!! | AATTTTTATTACCTGGAGTT+GGG | + | chr1.1:65748628-65748647 | None:intergenic | 25.0% |
!! | GAATTGCAATTTTTATTACC+TGG | + | chr1.1:65748635-65748654 | None:intergenic | 25.0% |
!! | GCTTTAAATTTGGTGAAATA+TGG | + | chr1.1:65748660-65748679 | None:intergenic | 25.0% |
!!! | ATTGATAGTGAAGCAAATTA+CGG | + | chr1.1:65748982-65749001 | None:intergenic | 25.0% |
!!! | CAGATATTTTTTCAATGTCA+AGG | + | chr1.1:65748583-65748602 | None:intergenic | 25.0% |
!!! | TTGTTCAAAAGTACTATTGT+TGG | - | chr1.1:65749213-65749232 | MS.gene21559:intron | 25.0% |
AAACAATGAACCATGATGTT+TGG | + | chr1.1:65749066-65749085 | None:intergenic | 30.0% | |
AAAGACAACTAAAGAAGAGT+TGG | - | chr1.1:65750160-65750179 | MS.gene21559:intron | 30.0% | |
AACTTTGTAACCAAACATCA+TGG | - | chr1.1:65749053-65749072 | MS.gene21559:intron | 30.0% | |
AGGAATTATGAAGGTTAGAA+AGG | - | chr1.1:65749140-65749159 | MS.gene21559:intron | 30.0% | |
ATAAGTAGTGTAAAATGGAC+AGG | - | chr1.1:65748840-65748859 | MS.gene21559:intron | 30.0% | |
ATGCCAACATGAGTATTATT+GGG | - | chr1.1:65749821-65749840 | MS.gene21559:intron | 30.0% | |
CAAATTTCAACTACCTAACA+AGG | + | chr1.1:65749960-65749979 | None:intergenic | 30.0% | |
CATTCACATTCTATTTGAGT+AGG | + | chr1.1:65749669-65749688 | None:intergenic | 30.0% | |
CTTGTTAGGTAGTTGAAATT+TGG | - | chr1.1:65749958-65749977 | MS.gene21559:intron | 30.0% | |
GACTCATAAGTAGTGTAAAA+TGG | - | chr1.1:65748835-65748854 | MS.gene21559:intron | 30.0% | |
GATATTATAAGGTGTGAGAA+TGG | - | chr1.1:65749617-65749636 | MS.gene21559:intron | 30.0% | |
GGAATTATGAAGGTTAGAAA+GGG | - | chr1.1:65749141-65749160 | MS.gene21559:intron | 30.0% | |
TAATACTGATGAGATCAAAC+AGG | - | chr1.1:65749169-65749188 | MS.gene21559:intron | 30.0% | |
TGATGTTTGGTTACAAAGTT+TGG | + | chr1.1:65749053-65749072 | None:intergenic | 30.0% | |
TTCTATCATAAAGTCACCAT+TGG | + | chr1.1:65749708-65749727 | None:intergenic | 30.0% | |
TTGCTTCACTATCAATAAGA+TGG | - | chr1.1:65748986-65749005 | MS.gene21559:intron | 30.0% | |
! | CAAATGAATCCTCTTTTCAT+TGG | + | chr1.1:65750038-65750057 | None:intergenic | 30.0% |
! | CAATTTTTATTACCTGGAGT+TGG | + | chr1.1:65748629-65748648 | None:intergenic | 30.0% |
!!! | TAGTACCTTATTTTGTAGAG+AGG | - | chr1.1:65750310-65750329 | MS.gene21559:intron | 30.0% |
AATGCCATTCCAATGAAAAG+AGG | - | chr1.1:65750026-65750045 | MS.gene21559:intron | 35.0% | |
AGGATGTGAATATTGTGAGA+TGG | + | chr1.1:65749649-65749668 | None:intergenic | 35.0% | |
AGTTTAAGCATGGATTTCCA+TGG | - | chr1.1:65749303-65749322 | MS.gene21559:intron | 35.0% | |
ATAACCTTCTATGACTGCAT+TGG | - | chr1.1:65749490-65749509 | MS.gene21559:intron | 35.0% | |
ATACTTTGCTGAGCTATCTT+CGG | + | chr1.1:65748551-65748570 | None:intergenic | 35.0% | |
CATAGCATCAAAGAAGTCAT+TGG | + | chr1.1:65749896-65749915 | None:intergenic | 35.0% | |
GAAACTAAAGTTTGGCGTAA+AGG | - | chr1.1:65748449-65748468 | MS.gene21559:CDS | 35.0% | |
GATAACTTCCAAACAAGTGT+GGG | + | chr1.1:65749867-65749886 | None:intergenic | 35.0% | |
GATGCCAACATGAGTATTAT+TGG | - | chr1.1:65749820-65749839 | MS.gene21559:intron | 35.0% | |
GTTTAAGCATGGATTTCCAT+GGG | - | chr1.1:65749304-65749323 | MS.gene21559:intron | 35.0% | |
TCTATACCCATCATACCTAT+AGG | + | chr1.1:65749121-65749140 | None:intergenic | 35.0% | |
TGATAACTTCCAAACAAGTG+TGG | + | chr1.1:65749868-65749887 | None:intergenic | 35.0% | |
TGCCAACATGAGTATTATTG+GGG | - | chr1.1:65749822-65749841 | MS.gene21559:intron | 35.0% | |
TGGGTATAGAGGAATTATGA+AGG | - | chr1.1:65749131-65749150 | MS.gene21559:intron | 35.0% | |
TTCCCCAATAATACTCATGT+TGG | + | chr1.1:65749827-65749846 | None:intergenic | 35.0% | |
! | AATCAGTGAGTTTTTCCTTG+AGG | - | chr1.1:65749783-65749802 | MS.gene21559:intron | 35.0% |
! | ATTCTTAACGGGTACAATTC+AGG | - | chr1.1:65748902-65748921 | MS.gene21559:intron | 35.0% |
! | GAATCCTCTTTTCATTGGAA+TGG | + | chr1.1:65750033-65750052 | None:intergenic | 35.0% |
! | TCTCTGCTATGTGGATTAAA+GGG | - | chr1.1:65749424-65749443 | MS.gene21559:intron | 35.0% |
! | TTCTTAACGGGTACAATTCA+GGG | - | chr1.1:65748903-65748922 | MS.gene21559:intron | 35.0% |
! | TTTCATTGGAATGGCATTGA+TGG | + | chr1.1:65750024-65750043 | None:intergenic | 35.0% |
! | TTTTGTTGAAACTCCTCCAT+TGG | + | chr1.1:65750378-65750397 | None:intergenic | 35.0% |
!! | AATGGCATTGATGGTTTGAT+AGG | + | chr1.1:65750015-65750034 | None:intergenic | 35.0% |
!! | TATAGGTATGATGGGTATAG+AGG | - | chr1.1:65749120-65749139 | MS.gene21559:intron | 35.0% |
!!! | ACCTTATTTTGTAGAGAGGT+CGG | - | chr1.1:65750314-65750333 | MS.gene21559:intron | 35.0% |
!!! | ATTGGGGAACACCTTTTTTA+TGG | - | chr1.1:65749838-65749857 | MS.gene21559:intron | 35.0% |
AACTCCATAGTCTTCATGTC+TGG | - | chr1.1:65750119-65750138 | MS.gene21559:intron | 40.0% | |
ACAACCAATGCAGTCATAGA+AGG | + | chr1.1:65749497-65749516 | None:intergenic | 40.0% | |
ACCATATCAACGTCTTCCAA+TGG | - | chr1.1:65749689-65749708 | MS.gene21559:intron | 40.0% | |
ACCATTGGAAGACGTTGATA+TGG | + | chr1.1:65749693-65749712 | None:intergenic | 40.0% | |
AGCTCAGCAAAGTATGTCAT+CGG | - | chr1.1:65748556-65748575 | MS.gene21559:CDS | 40.0% | |
AGTGTGGGACACCATAAAAA+AGG | + | chr1.1:65749852-65749871 | None:intergenic | 40.0% | |
ATAGTCTTCAAGGGTTCCTT+TGG | + | chr1.1:65748525-65748544 | None:intergenic | 40.0% | |
ATCTCCAGACATGAAGACTA+TGG | + | chr1.1:65750126-65750145 | None:intergenic | 40.0% | |
ATGTGCAATCCATTGTGGTT+GGG | - | chr1.1:65749272-65749291 | MS.gene21559:intron | 40.0% | |
CAGGTACTCAACATGACAAT+GGG | - | chr1.1:65749091-65749110 | MS.gene21559:intron | 40.0% | |
CATTGTCATGTTGAGTACCT+GGG | + | chr1.1:65749092-65749111 | None:intergenic | 40.0% | |
GAGTTGGGTTTGAAAGCTTT+GGG | + | chr1.1:65748613-65748632 | None:intergenic | 40.0% | |
GGTTCTCCTATAGGTATGAT+GGG | - | chr1.1:65749112-65749131 | MS.gene21559:intron | 40.0% | |
TACTTTGCTGAGCTATCTTC+GGG | + | chr1.1:65748550-65748569 | None:intergenic | 40.0% | |
! | ACGCTGCTAAAGTTTTCTAC+GGG | + | chr1.1:65749360-65749379 | None:intergenic | 40.0% |
! | ATGACAATGGGTTCTCCTAT+AGG | - | chr1.1:65749103-65749122 | MS.gene21559:intron | 40.0% |
! | CACGCTGCTAAAGTTTTCTA+CGG | + | chr1.1:65749361-65749380 | None:intergenic | 40.0% |
! | GTCTCTGCTATGTGGATTAA+AGG | - | chr1.1:65749423-65749442 | MS.gene21559:intron | 40.0% |
! | TCTTAACGGGTACAATTCAG+GGG | - | chr1.1:65748904-65748923 | MS.gene21559:intron | 40.0% |
!! | AAAGTTTTCTACGGGTTGCA+TGG | + | chr1.1:65749352-65749371 | None:intergenic | 40.0% |
!! | CACAAGATTGGCTTCTCATA+TGG | + | chr1.1:65748476-65748495 | None:intergenic | 40.0% |
!! | TTCTATGACTGCATTGGTTG+TGG | - | chr1.1:65749496-65749515 | MS.gene21559:intron | 40.0% |
AAGCTTTCAAACCCAACTCC+AGG | - | chr1.1:65748614-65748633 | MS.gene21559:CDS | 45.0% | |
AATGGAGACACTGACACCAA+TGG | - | chr1.1:65750359-65750378 | MS.gene21559:intron | 45.0% | |
ATGGTTCATTGTTTGTGCCC+AGG | - | chr1.1:65749072-65749091 | MS.gene21559:intron | 45.0% | |
CCAGGTACTCAACATGACAA+TGG | - | chr1.1:65749090-65749109 | MS.gene21559:intron | 45.0% | |
CCATGATGTGCAATCCATTG+TGG | - | chr1.1:65749267-65749286 | MS.gene21559:intron | 45.0% | |
CCATTGTCATGTTGAGTACC+TGG | + | chr1.1:65749093-65749112 | None:intergenic | 45.0% | |
CTTCGGGAGATAGTCTTCAA+GGG | + | chr1.1:65748534-65748553 | None:intergenic | 45.0% | |
GATGTGCAATCCATTGTGGT+TGG | - | chr1.1:65749271-65749290 | MS.gene21559:intron | 45.0% | |
GCCGACCTCTCTACAAAATA+AGG | + | chr1.1:65750318-65750337 | None:intergenic | 45.0% | |
GGAGTTGGGTTTGAAAGCTT+TGG | + | chr1.1:65748614-65748633 | None:intergenic | 45.0% | |
GGATTGCATTTCAAGGCCAA+AGG | - | chr1.1:65748506-65748525 | MS.gene21559:CDS | 45.0% | |
GGCATGGTGTAGTTTAAGCA+TGG | - | chr1.1:65749293-65749312 | MS.gene21559:intron | 45.0% | |
GGGTTCTCCTATAGGTATGA+TGG | - | chr1.1:65749111-65749130 | MS.gene21559:intron | 45.0% | |
GGTTACCCAGAATGTCCAAA+CGG | + | chr1.1:65749331-65749350 | None:intergenic | 45.0% | |
GTCAGTGTCTCCATTAGTGT+CGG | + | chr1.1:65750354-65750373 | None:intergenic | 45.0% | |
TATGGTGTCCCACACTTGTT+TGG | - | chr1.1:65749856-65749875 | MS.gene21559:intron | 45.0% | |
TCTTCGGGAGATAGTCTTCA+AGG | + | chr1.1:65748535-65748554 | None:intergenic | 45.0% | |
TGAGAGTTGTCTCTGCTATG+TGG | - | chr1.1:65749415-65749434 | MS.gene21559:intron | 45.0% | |
! | GTTTTTCCTTGAGGTCCTTG+AGG | - | chr1.1:65749792-65749811 | MS.gene21559:intron | 45.0% |
! | TCTTTAGAAGAGTGCAGCCA+AGG | + | chr1.1:65750506-65750525 | None:intergenic | 45.0% |
!! | ATTAGTGTCGGCCTCATAGT+CGG | + | chr1.1:65750342-65750361 | None:intergenic | 45.0% |
!! | CCACAATGGATTGCACATCA+TGG | + | chr1.1:65749270-65749289 | None:intergenic | 45.0% |
!! | GGCATTGATGGTTTGATAGG+TGG | + | chr1.1:65750012-65750031 | None:intergenic | 45.0% |
AGAATGTCCAAACGGACCCA+TGG | + | chr1.1:65749323-65749342 | None:intergenic | 50.0% | |
ATGGGTCCGTTTGGACATTC+TGG | - | chr1.1:65749322-65749341 | MS.gene21559:intron | 50.0% | |
CAATCCATTGTGGTTGGGCA+TGG | - | chr1.1:65749277-65749296 | MS.gene21559:intron | 50.0% | |
CCAAGGCCGATCTCATTACT+TGG | + | chr1.1:65750489-65750508 | None:intergenic | 50.0% | |
CCAAGTAATGAGATCGGCCT+TGG | - | chr1.1:65750486-65750505 | MS.gene21559:CDS | 50.0% | |
CCAATCTTGTGTAACGCCTG+TGG | - | chr1.1:65748485-65748504 | MS.gene21559:CDS | 50.0% | |
CCACAGGCGTTACACAAGAT+TGG | + | chr1.1:65748488-65748507 | None:intergenic | 50.0% | |
GACTATGAGGCCGACACTAA+TGG | - | chr1.1:65750341-65750360 | MS.gene21559:intron | 50.0% | |
GGCCTTGAAATGCAATCCAC+AGG | + | chr1.1:65748504-65748523 | None:intergenic | 50.0% | |
TACACCATGCCCAACCACAA+TGG | + | chr1.1:65749284-65749303 | None:intergenic | 50.0% | |
TGGATTTCCATGGGTCCGTT+TGG | - | chr1.1:65749313-65749332 | MS.gene21559:intron | 50.0% | |
TGGGTCCGTTTGGACATTCT+GGG | - | chr1.1:65749323-65749342 | MS.gene21559:intron | 50.0% | |
TGTTGGCATCATGCACCTCA+AGG | + | chr1.1:65749810-65749829 | None:intergenic | 50.0% | |
! | CGCCTGTGGATTGCATTTCA+AGG | - | chr1.1:65748499-65748518 | MS.gene21559:CDS | 50.0% |
CATGCACCTCAAGGACCTCA+AGG | + | chr1.1:65749801-65749820 | None:intergenic | 55.0% | |
GGAGACACTGACACCAATGG+AGG | - | chr1.1:65750362-65750381 | MS.gene21559:intron | 55.0% | |
!! | AGAGGTCGGCACCGACTATG+AGG | - | chr1.1:65750328-65750347 | MS.gene21559:intron | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.1 | gene | 65748437 | 65750566 | 65748437 | ID=MS.gene21559 |
chr1.1 | mRNA | 65748437 | 65750566 | 65748437 | ID=MS.gene21559.t1;Parent=MS.gene21559 |
chr1.1 | exon | 65750368 | 65750566 | 65750368 | ID=MS.gene21559.t1.exon1;Parent=MS.gene21559.t1 |
chr1.1 | CDS | 65750368 | 65750566 | 65750368 | ID=cds.MS.gene21559.t1;Parent=MS.gene21559.t1 |
chr1.1 | exon | 65748437 | 65748675 | 65748437 | ID=MS.gene21559.t1.exon2;Parent=MS.gene21559.t1 |
chr1.1 | CDS | 65748437 | 65748675 | 65748437 | ID=cds.MS.gene21559.t1;Parent=MS.gene21559.t1 |
Gene Sequence |
Protein sequence |