Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21623.t1 | XP_003611074.1 | 91.3 | 252 | 20 | 2 | 1 | 251 | 1 | 251 | 2.00E-123 | 451.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21623.t1 | G7KC16 | 91.3 | 252 | 20 | 2 | 1 | 251 | 1 | 251 | 1.5e-123 | 451.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene21623.t1 | TR | Others |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21623.t1 | MTR_5g010120 | 91.270 | 252 | 20 | 2 | 1 | 251 | 1 | 251 | 1.55e-161 | 447 |
MS.gene21623.t1 | MTR_8g098725 | 49.505 | 202 | 69 | 5 | 65 | 240 | 97 | 291 | 4.87e-54 | 177 |
MS.gene21623.t1 | MTR_8g098725 | 47.573 | 206 | 71 | 5 | 65 | 240 | 97 | 295 | 3.24e-52 | 172 |
MS.gene21623.t1 | MTR_2g068730 | 54.545 | 88 | 37 | 1 | 148 | 232 | 136 | 223 | 2.20e-22 | 93.2 |
MS.gene21623.t1 | MTR_1g044785 | 47.917 | 96 | 41 | 2 | 141 | 236 | 107 | 193 | 9.22e-20 | 85.1 |
MS.gene21623.t1 | MTR_2g096080 | 41.739 | 115 | 45 | 2 | 129 | 221 | 90 | 204 | 1.34e-19 | 85.1 |
MS.gene21623.t1 | MTR_1g073350 | 51.948 | 77 | 37 | 0 | 139 | 215 | 283 | 359 | 7.01e-19 | 85.5 |
MS.gene21623.t1 | MTR_4g061823 | 36.913 | 149 | 66 | 4 | 89 | 221 | 58 | 194 | 4.18e-17 | 78.2 |
MS.gene21623.t1 | MTR_4g061910 | 36.913 | 149 | 66 | 4 | 89 | 221 | 58 | 194 | 4.18e-17 | 78.2 |
MS.gene21623.t1 | MTR_1g008220 | 48.276 | 87 | 38 | 2 | 138 | 220 | 194 | 277 | 7.03e-17 | 78.6 |
MS.gene21623.t1 | MTR_3g091340 | 35.075 | 134 | 71 | 3 | 104 | 222 | 119 | 251 | 2.46e-15 | 73.6 |
MS.gene21623.t1 | MTR_3g091340 | 35.075 | 134 | 71 | 3 | 104 | 222 | 112 | 244 | 2.47e-15 | 73.6 |
MS.gene21623.t1 | MTR_3g091340 | 35.075 | 134 | 71 | 3 | 104 | 222 | 148 | 280 | 3.40e-15 | 73.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21623.t1 | AT5G41380 | 48.370 | 184 | 73 | 6 | 58 | 221 | 83 | 264 | 2.49e-40 | 141 |
MS.gene21623.t1 | AT1G63820 | 49.342 | 152 | 54 | 5 | 117 | 248 | 117 | 265 | 2.44e-35 | 128 |
MS.gene21623.t1 | AT3G12890 | 51.546 | 97 | 44 | 2 | 154 | 250 | 121 | 214 | 1.14e-21 | 90.9 |
MS.gene21623.t1 | AT1G04500 | 33.484 | 221 | 107 | 8 | 34 | 234 | 146 | 346 | 4.62e-20 | 88.6 |
MS.gene21623.t1 | AT1G04500 | 33.484 | 221 | 107 | 8 | 34 | 234 | 146 | 346 | 4.62e-20 | 88.6 |
MS.gene21623.t1 | AT1G04500 | 33.484 | 221 | 107 | 8 | 34 | 234 | 137 | 337 | 4.70e-20 | 88.6 |
MS.gene21623.t1 | AT2G33350 | 66.667 | 57 | 19 | 0 | 163 | 219 | 301 | 357 | 4.88e-18 | 82.8 |
MS.gene21623.t1 | AT2G33350 | 66.667 | 57 | 19 | 0 | 163 | 219 | 302 | 358 | 5.78e-18 | 82.8 |
MS.gene21623.t1 | AT2G33350 | 66.667 | 57 | 19 | 0 | 163 | 219 | 290 | 346 | 6.00e-18 | 82.8 |
MS.gene21623.t1 | AT2G33350 | 66.667 | 57 | 19 | 0 | 163 | 219 | 310 | 366 | 6.23e-18 | 82.8 |
MS.gene21623.t1 | AT4G27900 | 48.315 | 89 | 37 | 3 | 138 | 222 | 178 | 261 | 3.84e-16 | 76.3 |
MS.gene21623.t1 | AT4G27900 | 48.315 | 89 | 37 | 3 | 138 | 222 | 178 | 261 | 3.84e-16 | 76.3 |
MS.gene21623.t1 | AT5G53420 | 44.318 | 88 | 47 | 2 | 129 | 216 | 177 | 262 | 2.35e-15 | 73.9 |
MS.gene21623.t1 | AT5G53420 | 44.318 | 88 | 47 | 2 | 129 | 216 | 98 | 183 | 2.89e-15 | 72.0 |
MS.gene21623.t1 | AT5G53420 | 44.318 | 88 | 47 | 2 | 129 | 216 | 98 | 183 | 2.89e-15 | 72.0 |
MS.gene21623.t1 | AT5G53420 | 44.318 | 88 | 47 | 2 | 129 | 216 | 98 | 183 | 2.89e-15 | 72.0 |
MS.gene21623.t1 | AT5G59990 | 43.103 | 116 | 56 | 3 | 136 | 243 | 119 | 232 | 4.32e-14 | 70.1 |
Find 53 sgRNAs with CRISPR-Local
Find 91 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AATTCATGCCATTGGAAATT+TGG | 0.108434 | 5.2:-3488859 | None:intergenic |
TGTTTGGGCTTGAATGTTTA+TGG | 0.196449 | 5.2:-3488546 | None:intergenic |
ATTCATGCCATTGGAAATTT+GGG | 0.264246 | 5.2:-3488858 | None:intergenic |
ATCATCATGAAGACGAGTTC+TGG | 0.270661 | 5.2:+3489709 | MS.gene21623:CDS |
CAAAGTAGGGCGTTACAATT+TGG | 0.279002 | 5.2:+3489208 | MS.gene21623:CDS |
GGATCATAAGAGACTTTGTT+TGG | 0.295719 | 5.2:-3488562 | None:intergenic |
AGCTCCTCTGCATTAACTTT+TGG | 0.308354 | 5.2:-3488765 | None:intergenic |
GGAAATTTCTCTACTTTGGA+TGG | 0.338370 | 5.2:+3488691 | MS.gene21623:CDS |
GAACTTCCTCCGGCTTCTCT+TGG | 0.364020 | 5.2:-3489264 | None:intergenic |
GCTTGGAAATTTCTCTACTT+TGG | 0.370290 | 5.2:+3488687 | MS.gene21623:CDS |
GAAGTTCAACAAGATTATTA+AGG | 0.398859 | 5.2:+3489280 | MS.gene21623:CDS |
GTGCAGTGCAGGAGATTTGC+AGG | 0.405645 | 5.2:+3488927 | MS.gene21623:CDS |
GATTGTCGGCTAGTGTCTTT+CGG | 0.419573 | 5.2:-3489605 | None:intergenic |
TAAGCTTCAGAAGGAAAATC+AGG | 0.424848 | 5.2:-3488814 | None:intergenic |
ATTTAGGTTGATTTCATTGA+AGG | 0.428619 | 5.2:+3489848 | MS.gene21623:intron |
TAATCTTGTTGAACTTCCTC+CGG | 0.431668 | 5.2:-3489274 | None:intergenic |
GGGAGTCCATCTGTGTGTTA+TGG | 0.434607 | 5.2:-3488837 | None:intergenic |
GAAAACTGAGGAATGTCAAA+TGG | 0.438264 | 5.2:+3488723 | MS.gene21623:CDS |
GCACGCCCTTCTTATTTGTC+CGG | 0.440631 | 5.2:-3488908 | None:intergenic |
TGTTGTTGTGATCTTAATAG+AGG | 0.449547 | 5.2:-3489886 | None:intergenic |
GATCATAAGAGACTTTGTTT+GGG | 0.452048 | 5.2:-3488561 | None:intergenic |
TCTTCTCCAACCAGTGAGCT+TGG | 0.454671 | 5.2:+3488670 | MS.gene21623:CDS |
ACGTATGCGTGTTCGATTGT+CGG | 0.459741 | 5.2:-3489619 | None:intergenic |
GAAATTTCTCTACTTTGGAT+GGG | 0.461348 | 5.2:+3488692 | MS.gene21623:CDS |
ATAAGAAGGGCGTGCAGTGC+AGG | 0.462306 | 5.2:+3488916 | MS.gene21623:CDS |
GATGAAGTAAACTTCAAAGT+AGG | 0.477302 | 5.2:+3489194 | MS.gene21623:CDS |
TCATCATGAAGACGAGTTCT+GGG | 0.484075 | 5.2:+3489710 | MS.gene21623:CDS |
GATCAGAACATGGCAACACC+TGG | 0.484597 | 5.2:+3489161 | MS.gene21623:intron |
CTGTTTCAATGTAATTGAAA+GGG | 0.489672 | 5.2:-3488591 | None:intergenic |
ACTGTTTCAATGTAATTGAA+AGG | 0.489675 | 5.2:-3488592 | None:intergenic |
TTTAGGTTGATTTCATTGAA+GGG | 0.494868 | 5.2:+3489849 | MS.gene21623:intron |
GGGAGCTCAATTCATGCCAT+TGG | 0.496254 | 5.2:-3488867 | None:intergenic |
GGCAACACCTGGGTCTCAAA+CGG | 0.500495 | 5.2:+3489172 | MS.gene21623:CDS |
GATATAGAGCCAAGAGAAGC+CGG | 0.504164 | 5.2:+3489255 | MS.gene21623:CDS |
ACTTCATCCGTTTGAGACCC+AGG | 0.512208 | 5.2:-3489179 | None:intergenic |
TCTTCACCGGACAAATAAGA+AGG | 0.514231 | 5.2:+3488902 | MS.gene21623:CDS |
AGAGAAATTTCCAAGCTCAC+TGG | 0.521246 | 5.2:-3488680 | None:intergenic |
TTACATTGAAACAGTTCAAG+AGG | 0.525691 | 5.2:+3488600 | MS.gene21623:CDS |
CCCGAAAATAGTTTCTTCAC+CGG | 0.538362 | 5.2:+3488889 | MS.gene21623:CDS |
ATGAAGTAAACTTCAAAGTA+GGG | 0.543162 | 5.2:+3489195 | MS.gene21623:CDS |
AAAACTGAGGAATGTCAAAT+GGG | 0.562447 | 5.2:+3488724 | MS.gene21623:CDS |
AAATTTCCAAGCTCACTGGT+TGG | 0.575257 | 5.2:-3488676 | None:intergenic |
ATGTAATTGAAAGGGTAATG+AGG | 0.586254 | 5.2:-3488583 | None:intergenic |
AGCTTACCATAACACACAGA+TGG | 0.590460 | 5.2:+3488831 | MS.gene21623:CDS |
TTCATGCCATTGGAAATTTG+GGG | 0.622889 | 5.2:-3488857 | None:intergenic |
CTTCACCGGACAAATAAGAA+GGG | 0.624611 | 5.2:+3488903 | MS.gene21623:CDS |
TGGACTCCCCAAATTTCCAA+TGG | 0.637971 | 5.2:+3488851 | MS.gene21623:CDS |
GTGTTATGGTAAGCTTCAGA+AGG | 0.638279 | 5.2:-3488823 | None:intergenic |
ATCAGAACATGGCAACACCT+GGG | 0.639682 | 5.2:+3489162 | MS.gene21623:intron |
GACAATCGAACACGCATACG+TGG | 0.645981 | 5.2:+3489621 | MS.gene21623:CDS |
TGGGTCTCGTTTGAAAACTG+AGG | 0.669045 | 5.2:+3488711 | MS.gene21623:CDS |
ACTACCAAAAGTTAATGCAG+AGG | 0.669632 | 5.2:+3488761 | MS.gene21623:CDS |
ATAGAGCCAAGAGAAGCCGG+AGG | 0.708071 | 5.2:+3489258 | MS.gene21623:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATTTTCATTTTTTAAATGTA+GGG | + | chr5.2:3489053-3489072 | MS.gene21623:intron | 10.0% |
!!! | TTTAATTTTATCTGTATTAA+AGG | + | chr5.2:3489125-3489144 | MS.gene21623:intron | 10.0% |
!! | ATGATTAAATTAATACGTAT+CGG | - | chr5.2:3489035-3489054 | None:intergenic | 15.0% |
!! | ATTTAGAAACAAAAAATATG+TGG | - | chr5.2:3489535-3489554 | None:intergenic | 15.0% |
!! | TTCAGATTAAAAAATGTATA+TGG | + | chr5.2:3489006-3489025 | MS.gene21623:intron | 15.0% |
!!! | ATTTTTTGTTTCTAAATATG+TGG | + | chr5.2:3489538-3489557 | MS.gene21623:intron | 15.0% |
!!! | CATTTTCATTTTTTAAATGT+AGG | + | chr5.2:3489052-3489071 | MS.gene21623:intron | 15.0% |
!!! | TATTATTGAGGTTTTTATTT+AGG | + | chr5.2:3489832-3489851 | MS.gene21623:intron | 15.0% |
!! | ACTTTACTAGTAATAATTGA+AGG | + | chr5.2:3489478-3489497 | MS.gene21623:intron | 20.0% |
!! | TCAAATAATAGACATAAACA+CGG | - | chr5.2:3489087-3489106 | None:intergenic | 20.0% |
!!! | ATTTTTTTTTTTACTTCCGA+GGG | - | chr5.2:3489407-3489426 | None:intergenic | 20.0% |
!!! | TCTTTTGTTGTTTTTAATTG+TGG | + | chr5.2:3489563-3489582 | MS.gene21623:intron | 20.0% |
! | AAAATATATATGGTAAGCCA+CGG | - | chr5.2:3488973-3488992 | None:intergenic | 25.0% |
! | ACTGTTTCAATGTAATTGAA+AGG | - | chr5.2:3488595-3488614 | None:intergenic | 25.0% |
! | ATGAAGTAAACTTCAAAGTA+GGG | + | chr5.2:3489195-3489214 | MS.gene21623:CDS | 25.0% |
! | CTGTTTCAATGTAATTGAAA+GGG | - | chr5.2:3488594-3488613 | None:intergenic | 25.0% |
! | GAAGTTCAACAAGATTATTA+AGG | + | chr5.2:3489280-3489299 | MS.gene21623:CDS | 25.0% |
! | TGGATGCTCAAAAATATATA+TGG | - | chr5.2:3488983-3489002 | None:intergenic | 25.0% |
!! | ATGTGGTGTTAATATTATTG+AGG | + | chr5.2:3489820-3489839 | MS.gene21623:intron | 25.0% |
!! | GTCTATTATTTGATAGTAGA+TGG | + | chr5.2:3489094-3489113 | MS.gene21623:intron | 25.0% |
!!! | ACATTTTTTAATCTGAAGTG+TGG | - | chr5.2:3489003-3489022 | None:intergenic | 25.0% |
!!! | ATTTAGGTTGATTTCATTGA+AGG | + | chr5.2:3489848-3489867 | MS.gene21623:intron | 25.0% |
!!! | CATTTTTTTTTTTACTTCCG+AGG | - | chr5.2:3489408-3489427 | None:intergenic | 25.0% |
!!! | TTTAGGTTGATTTCATTGAA+GGG | + | chr5.2:3489849-3489868 | MS.gene21623:intron | 25.0% |
AAAACTGAGGAATGTCAAAT+GGG | + | chr5.2:3488724-3488743 | MS.gene21623:CDS | 30.0% | |
AAATAACCTAATTAACACCG+TGG | + | chr5.2:3488953-3488972 | MS.gene21623:intron | 30.0% | |
AATTCATGCCATTGGAAATT+TGG | - | chr5.2:3488862-3488881 | None:intergenic | 30.0% | |
AGAAAAAGAAAAGAAGGAAG+AGG | - | chr5.2:3488653-3488672 | None:intergenic | 30.0% | |
ATGTAATTGAAAGGGTAATG+AGG | - | chr5.2:3488586-3488605 | None:intergenic | 30.0% | |
ATTCATGCCATTGGAAATTT+GGG | - | chr5.2:3488861-3488880 | None:intergenic | 30.0% | |
GAAATTTCTCTACTTTGGAT+GGG | + | chr5.2:3488692-3488711 | MS.gene21623:CDS | 30.0% | |
GATGAAGTAAACTTCAAAGT+AGG | + | chr5.2:3489194-3489213 | MS.gene21623:CDS | 30.0% | |
GTTTAATACTTGCATCAATG+TGG | + | chr5.2:3489803-3489822 | MS.gene21623:intron | 30.0% | |
TGGAGAAGAAAAAGAAAAGA+AGG | - | chr5.2:3488659-3488678 | None:intergenic | 30.0% | |
TTACATTGAAACAGTTCAAG+AGG | + | chr5.2:3488600-3488619 | MS.gene21623:CDS | 30.0% | |
! | GATCATAAGAGACTTTGTTT+GGG | - | chr5.2:3488564-3488583 | None:intergenic | 30.0% |
!!! | TTTTCTGTTTTTGAACACAC+AGG | - | chr5.2:3489687-3489706 | None:intergenic | 30.0% |
ACAAAAGAAAGTTGTTCCCT+CGG | + | chr5.2:3489388-3489407 | MS.gene21623:intron | 35.0% | |
ACTACCAAAAGTTAATGCAG+AGG | + | chr5.2:3488761-3488780 | MS.gene21623:CDS | 35.0% | |
GAAAACTGAGGAATGTCAAA+TGG | + | chr5.2:3488723-3488742 | MS.gene21623:CDS | 35.0% | |
GCTGTTTATTGATCAGAACA+TGG | + | chr5.2:3489151-3489170 | MS.gene21623:intron | 35.0% | |
GCTTGGAAATTTCTCTACTT+TGG | + | chr5.2:3488687-3488706 | MS.gene21623:CDS | 35.0% | |
GGAAATTTCTCTACTTTGGA+TGG | + | chr5.2:3488691-3488710 | MS.gene21623:CDS | 35.0% | |
GGATCATAAGAGACTTTGTT+TGG | - | chr5.2:3488565-3488584 | None:intergenic | 35.0% | |
TAAGCTTCAGAAGGAAAATC+AGG | - | chr5.2:3488817-3488836 | None:intergenic | 35.0% | |
TAATCTTGTTGAACTTCCTC+CGG | - | chr5.2:3489277-3489296 | None:intergenic | 35.0% | |
TGTTTGGGCTTGAATGTTTA+TGG | - | chr5.2:3488549-3488568 | None:intergenic | 35.0% | |
TTCATGCCATTGGAAATTTG+GGG | - | chr5.2:3488860-3488879 | None:intergenic | 35.0% | |
! | GTTTTTGAACACACAGGTTT+TGG | - | chr5.2:3489681-3489700 | None:intergenic | 35.0% |
! | TCCGGTGAAGAAACTATTTT+CGG | - | chr5.2:3488893-3488912 | None:intergenic | 35.0% |
!! | CTGCATTAACTTTTGGTAGT+AGG | - | chr5.2:3488761-3488780 | None:intergenic | 35.0% |
AAATTTCCAAGCTCACTGGT+TGG | - | chr5.2:3488679-3488698 | None:intergenic | 40.0% | |
AGAGAAATTTCCAAGCTCAC+TGG | - | chr5.2:3488683-3488702 | None:intergenic | 40.0% | |
AGCTTACCATAACACACAGA+TGG | + | chr5.2:3488831-3488850 | MS.gene21623:CDS | 40.0% | |
AGTTCAGATATACCCCTTTC+AGG | - | chr5.2:3489352-3489371 | None:intergenic | 40.0% | |
ATCATCATGAAGACGAGTTC+TGG | + | chr5.2:3489709-3489728 | MS.gene21623:CDS | 40.0% | |
ATGCTCCAACATTACCTGAA+AGG | + | chr5.2:3489335-3489354 | MS.gene21623:intron | 40.0% | |
CCCGAAAATAGTTTCTTCAC+CGG | + | chr5.2:3488889-3488908 | MS.gene21623:CDS | 40.0% | |
CTTCACCGGACAAATAAGAA+GGG | + | chr5.2:3488903-3488922 | MS.gene21623:CDS | 40.0% | |
GTGTTATGGTAAGCTTCAGA+AGG | - | chr5.2:3488826-3488845 | None:intergenic | 40.0% | |
TCATCATGAAGACGAGTTCT+GGG | + | chr5.2:3489710-3489729 | MS.gene21623:CDS | 40.0% | |
TCTTCACCGGACAAATAAGA+AGG | + | chr5.2:3488902-3488921 | MS.gene21623:CDS | 40.0% | |
TGCTCCAACATTACCTGAAA+GGG | + | chr5.2:3489336-3489355 | MS.gene21623:intron | 40.0% | |
! | AGCTCCTCTGCATTAACTTT+TGG | - | chr5.2:3488768-3488787 | None:intergenic | 40.0% |
! | ATACCCCTTTCAGGTAATGT+TGG | - | chr5.2:3489343-3489362 | None:intergenic | 40.0% |
! | CAAAGTAGGGCGTTACAATT+TGG | + | chr5.2:3489208-3489227 | MS.gene21623:CDS | 40.0% |
! | CCGGTGAAGAAACTATTTTC+GGG | - | chr5.2:3488892-3488911 | None:intergenic | 40.0% |
! | CGGTGAAGAAACTATTTTCG+GGG | - | chr5.2:3488891-3488910 | None:intergenic | 40.0% |
! | GGTGAAGAAACTATTTTCGG+GGG | - | chr5.2:3488890-3488909 | None:intergenic | 40.0% |
ACGTATGCGTGTTCGATTGT+CGG | - | chr5.2:3489622-3489641 | None:intergenic | 45.0% | |
ATCAGAACATGGCAACACCT+GGG | + | chr5.2:3489162-3489181 | MS.gene21623:intron | 45.0% | |
GATATAGAGCCAAGAGAAGC+CGG | + | chr5.2:3489255-3489274 | MS.gene21623:CDS | 45.0% | |
GCTCCAACATTACCTGAAAG+GGG | + | chr5.2:3489337-3489356 | MS.gene21623:intron | 45.0% | |
TGGACTCCCCAAATTTCCAA+TGG | + | chr5.2:3488851-3488870 | MS.gene21623:CDS | 45.0% | |
TGGGTCTCGTTTGAAAACTG+AGG | + | chr5.2:3488711-3488730 | MS.gene21623:CDS | 45.0% | |
TTTCGGCATGCATACTGTTG+TGG | - | chr5.2:3489591-3489610 | None:intergenic | 45.0% | |
! | GATTGTCGGCTAGTGTCTTT+CGG | - | chr5.2:3489608-3489627 | None:intergenic | 45.0% |
! | GGTAAGCCACGGTGTTAATT+AGG | - | chr5.2:3488962-3488981 | None:intergenic | 45.0% |
!!! | CACAGGTTTTGGAATCTCGT+TGG | - | chr5.2:3489670-3489689 | None:intergenic | 45.0% |
GACAATCGAACACGCATACG+TGG | + | chr5.2:3489621-3489640 | MS.gene21623:CDS | 50.0% | |
GATCAGAACATGGCAACACC+TGG | + | chr5.2:3489161-3489180 | MS.gene21623:intron | 50.0% | |
GGGAGCTCAATTCATGCCAT+TGG | - | chr5.2:3488870-3488889 | None:intergenic | 50.0% | |
GGGAGTCCATCTGTGTGTTA+TGG | - | chr5.2:3488840-3488859 | None:intergenic | 50.0% | |
TCTTCTCCAACCAGTGAGCT+TGG | + | chr5.2:3488670-3488689 | MS.gene21623:CDS | 50.0% | |
! | ACTTCATCCGTTTGAGACCC+AGG | - | chr5.2:3489182-3489201 | None:intergenic | 50.0% |
! | GCACGCCCTTCTTATTTGTC+CGG | - | chr5.2:3488911-3488930 | None:intergenic | 50.0% |
ATAGAGCCAAGAGAAGCCGG+AGG | + | chr5.2:3489258-3489277 | MS.gene21623:CDS | 55.0% | |
GAACTTCCTCCGGCTTCTCT+TGG | - | chr5.2:3489267-3489286 | None:intergenic | 55.0% | |
GGCAACACCTGGGTCTCAAA+CGG | + | chr5.2:3489172-3489191 | MS.gene21623:CDS | 55.0% | |
GTGCAGTGCAGGAGATTTGC+AGG | + | chr5.2:3488927-3488946 | MS.gene21623:CDS | 55.0% | |
! | ATAAGAAGGGCGTGCAGTGC+AGG | + | chr5.2:3488916-3488935 | MS.gene21623:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.2 | gene | 3488505 | 3489895 | 3488505 | ID=MS.gene21623 |
chr5.2 | mRNA | 3488505 | 3489895 | 3488505 | ID=MS.gene21623.t1;Parent=MS.gene21623 |
chr5.2 | exon | 3488505 | 3488948 | 3488505 | ID=MS.gene21623.t1.exon1;Parent=MS.gene21623.t1 |
chr5.2 | CDS | 3488505 | 3488948 | 3488505 | ID=cds.MS.gene21623.t1;Parent=MS.gene21623.t1 |
chr5.2 | exon | 3489167 | 3489301 | 3489167 | ID=MS.gene21623.t1.exon2;Parent=MS.gene21623.t1 |
chr5.2 | CDS | 3489167 | 3489301 | 3489167 | ID=cds.MS.gene21623.t1;Parent=MS.gene21623.t1 |
chr5.2 | exon | 3489597 | 3489731 | 3489597 | ID=MS.gene21623.t1.exon3;Parent=MS.gene21623.t1 |
chr5.2 | CDS | 3489597 | 3489731 | 3489597 | ID=cds.MS.gene21623.t1;Parent=MS.gene21623.t1 |
chr5.2 | exon | 3489854 | 3489895 | 3489854 | ID=MS.gene21623.t1.exon4;Parent=MS.gene21623.t1 |
chr5.2 | CDS | 3489854 | 3489895 | 3489854 | ID=cds.MS.gene21623.t1;Parent=MS.gene21623.t1 |
Gene Sequence |
Protein sequence |