Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21762.t1 | XP_024636348.1 | 58.8 | 745 | 153 | 4 | 1 | 615 | 1 | 721 | 1.80E-229 | 805.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21762.t1 | Q9SZL8 | 26.6 | 576 | 283 | 10 | 16 | 455 | 72 | 643 | 8.7e-47 | 189.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21762.t1 | A0A396GJD5 | 55.7 | 668 | 166 | 3 | 1 | 538 | 1 | 668 | 7.8e-198 | 699.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene21762.t1 | TF | FAR1 |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21762.t1 | MTR_6g051425 | 72.687 | 227 | 58 | 1 | 1 | 223 | 1 | 227 | 7.19e-117 | 352 |
MS.gene21762.t1 | MTR_2g039370 | 89.189 | 74 | 8 | 0 | 49 | 122 | 98 | 171 | 5.06e-37 | 140 |
MS.gene21762.t1 | MTR_3g465760 | 71.014 | 69 | 16 | 1 | 41 | 105 | 2 | 70 | 3.30e-27 | 105 |
MS.gene21762.t1 | MTR_4g035820 | 25.312 | 320 | 207 | 12 | 6 | 307 | 61 | 366 | 2.56e-19 | 92.8 |
MS.gene21762.t1 | MTR_1g083640 | 27.074 | 229 | 148 | 4 | 15 | 224 | 49 | 277 | 9.93e-19 | 87.4 |
MS.gene21762.t1 | MTR_1g013060 | 26.570 | 207 | 142 | 4 | 19 | 218 | 26 | 229 | 2.73e-18 | 84.7 |
MS.gene21762.t1 | MTR_0558s0020 | 28.700 | 223 | 140 | 5 | 21 | 224 | 40 | 262 | 5.81e-18 | 85.5 |
MS.gene21762.t1 | MTR_2g014100 | 27.876 | 226 | 133 | 6 | 5 | 200 | 25 | 250 | 4.90e-16 | 78.6 |
MS.gene21762.t1 | MTR_1g070355 | 26.633 | 199 | 138 | 5 | 27 | 221 | 84 | 278 | 8.46e-15 | 78.2 |
MS.gene21762.t1 | MTR_5g039760 | 27.670 | 206 | 113 | 7 | 11 | 211 | 6 | 180 | 5.01e-14 | 71.2 |
MS.gene21762.t1 | MTR_6g090505 | 24.454 | 229 | 133 | 6 | 59 | 247 | 16 | 244 | 1.45e-13 | 73.2 |
MS.gene21762.t1 | MTR_0402s0040 | 27.485 | 171 | 108 | 6 | 29 | 191 | 38 | 200 | 2.73e-13 | 73.2 |
MS.gene21762.t1 | MTR_0337s0040 | 29.630 | 135 | 94 | 1 | 83 | 216 | 81 | 215 | 7.81e-13 | 68.9 |
MS.gene21762.t1 | MTR_2g098880 | 31.405 | 121 | 73 | 3 | 7 | 121 | 51 | 167 | 8.91e-13 | 68.9 |
MS.gene21762.t1 | MTR_2g098880 | 31.405 | 121 | 73 | 3 | 7 | 121 | 63 | 179 | 9.86e-13 | 69.3 |
MS.gene21762.t1 | MTR_8g446020 | 27.222 | 180 | 119 | 2 | 56 | 223 | 42 | 221 | 2.10e-12 | 68.2 |
MS.gene21762.t1 | MTR_7g446520 | 28.986 | 207 | 119 | 9 | 27 | 230 | 98 | 279 | 2.26e-12 | 68.9 |
MS.gene21762.t1 | MTR_5g076070 | 24.519 | 208 | 145 | 5 | 20 | 221 | 56 | 257 | 9.24e-11 | 63.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21762.t1 | AT4G38180 | 31.897 | 232 | 152 | 4 | 228 | 455 | 414 | 643 | 7.51e-32 | 132 |
MS.gene21762.t1 | AT4G38180 | 37.438 | 203 | 121 | 4 | 16 | 214 | 72 | 272 | 6.39e-29 | 123 |
MS.gene21762.t1 | AT4G38170 | 25.773 | 291 | 200 | 6 | 227 | 513 | 178 | 456 | 1.48e-30 | 126 |
MS.gene21762.t1 | AT2G27110 | 31.556 | 225 | 147 | 4 | 229 | 450 | 217 | 437 | 2.16e-30 | 127 |
MS.gene21762.t1 | AT2G27110 | 31.556 | 225 | 147 | 4 | 229 | 450 | 362 | 582 | 2.65e-30 | 127 |
MS.gene21762.t1 | AT2G27110 | 24.762 | 210 | 131 | 5 | 13 | 222 | 45 | 227 | 5.41e-11 | 66.2 |
MS.gene21762.t1 | AT2G27110 | 31.556 | 225 | 147 | 4 | 229 | 450 | 362 | 582 | 2.65e-30 | 127 |
MS.gene21762.t1 | AT2G27110 | 24.762 | 210 | 131 | 5 | 13 | 222 | 45 | 227 | 5.41e-11 | 66.2 |
MS.gene21762.t1 | AT1G76320 | 29.464 | 224 | 150 | 3 | 227 | 447 | 326 | 544 | 4.83e-26 | 114 |
MS.gene21762.t1 | AT1G76320 | 29.464 | 224 | 150 | 3 | 227 | 447 | 326 | 544 | 4.83e-26 | 114 |
MS.gene21762.t1 | AT1G76320 | 29.464 | 224 | 150 | 3 | 227 | 447 | 326 | 544 | 4.94e-26 | 114 |
MS.gene21762.t1 | AT1G76320 | 29.464 | 224 | 150 | 3 | 227 | 447 | 326 | 544 | 5.14e-26 | 113 |
MS.gene21762.t1 | AT4G19990 | 31.651 | 218 | 144 | 4 | 233 | 447 | 287 | 502 | 3.66e-25 | 111 |
MS.gene21762.t1 | AT4G19990 | 31.651 | 218 | 144 | 4 | 233 | 447 | 344 | 559 | 3.67e-25 | 111 |
MS.gene21762.t1 | AT4G19990 | 31.651 | 218 | 144 | 4 | 233 | 447 | 344 | 559 | 3.67e-25 | 111 |
MS.gene21762.t1 | AT4G19990 | 31.651 | 218 | 144 | 4 | 233 | 447 | 344 | 559 | 4.04e-25 | 111 |
MS.gene21762.t1 | AT4G19990 | 31.651 | 218 | 144 | 4 | 233 | 447 | 358 | 573 | 4.14e-25 | 111 |
MS.gene21762.t1 | AT4G19990 | 31.651 | 218 | 144 | 4 | 233 | 447 | 344 | 559 | 4.96e-25 | 110 |
MS.gene21762.t1 | AT4G19990 | 31.651 | 218 | 144 | 4 | 233 | 447 | 344 | 559 | 4.96e-25 | 110 |
MS.gene21762.t1 | AT4G15090 | 29.098 | 244 | 165 | 5 | 207 | 447 | 371 | 609 | 5.03e-25 | 110 |
MS.gene21762.t1 | AT4G15090 | 29.327 | 208 | 135 | 6 | 20 | 221 | 54 | 255 | 3.81e-16 | 82.8 |
MS.gene21762.t1 | AT4G15090 | 29.098 | 244 | 165 | 5 | 207 | 447 | 371 | 609 | 5.03e-25 | 110 |
MS.gene21762.t1 | AT4G15090 | 29.327 | 208 | 135 | 6 | 20 | 221 | 54 | 255 | 3.81e-16 | 82.8 |
MS.gene21762.t1 | AT4G15090 | 29.098 | 244 | 165 | 5 | 207 | 447 | 371 | 609 | 5.03e-25 | 110 |
MS.gene21762.t1 | AT4G15090 | 29.327 | 208 | 135 | 6 | 20 | 221 | 54 | 255 | 3.81e-16 | 82.8 |
MS.gene21762.t1 | AT4G15090 | 29.098 | 244 | 165 | 5 | 207 | 447 | 371 | 609 | 5.03e-25 | 110 |
MS.gene21762.t1 | AT4G15090 | 29.327 | 208 | 135 | 6 | 20 | 221 | 54 | 255 | 3.81e-16 | 82.8 |
MS.gene21762.t1 | AT4G15090 | 29.098 | 244 | 165 | 5 | 207 | 447 | 371 | 609 | 5.03e-25 | 110 |
MS.gene21762.t1 | AT4G15090 | 29.327 | 208 | 135 | 6 | 20 | 221 | 54 | 255 | 3.81e-16 | 82.8 |
MS.gene21762.t1 | AT3G22170 | 32.287 | 223 | 145 | 4 | 228 | 447 | 399 | 618 | 9.88e-25 | 110 |
MS.gene21762.t1 | AT3G22170 | 32.287 | 223 | 145 | 4 | 228 | 447 | 399 | 618 | 9.88e-25 | 110 |
MS.gene21762.t1 | AT5G18960 | 29.915 | 234 | 136 | 5 | 228 | 448 | 511 | 729 | 1.02e-23 | 107 |
MS.gene21762.t1 | AT5G18960 | 29.915 | 234 | 136 | 5 | 228 | 448 | 511 | 729 | 1.02e-23 | 107 |
MS.gene21762.t1 | AT3G06250 | 29.487 | 234 | 137 | 6 | 228 | 448 | 487 | 705 | 2.02e-23 | 105 |
MS.gene21762.t1 | AT3G06250 | 28.293 | 205 | 104 | 6 | 14 | 216 | 187 | 350 | 4.93e-14 | 75.9 |
MS.gene21762.t1 | AT3G06250 | 29.487 | 234 | 137 | 6 | 228 | 448 | 487 | 705 | 2.02e-23 | 105 |
MS.gene21762.t1 | AT3G06250 | 28.293 | 205 | 104 | 6 | 14 | 216 | 187 | 350 | 4.93e-14 | 75.9 |
MS.gene21762.t1 | AT3G06250 | 29.487 | 234 | 137 | 6 | 228 | 448 | 487 | 705 | 2.02e-23 | 105 |
MS.gene21762.t1 | AT3G06250 | 28.293 | 205 | 104 | 6 | 14 | 216 | 187 | 350 | 4.93e-14 | 75.9 |
MS.gene21762.t1 | AT2G32250 | 27.074 | 229 | 159 | 5 | 221 | 446 | 288 | 511 | 1.23e-21 | 100 |
MS.gene21762.t1 | AT2G32250 | 27.074 | 229 | 159 | 5 | 221 | 446 | 288 | 511 | 1.26e-21 | 100 |
MS.gene21762.t1 | AT2G32250 | 27.074 | 229 | 159 | 5 | 221 | 446 | 329 | 552 | 1.33e-21 | 100 |
MS.gene21762.t1 | AT2G32250 | 27.074 | 229 | 159 | 5 | 221 | 446 | 329 | 552 | 1.33e-21 | 100 |
MS.gene21762.t1 | AT2G32250 | 27.074 | 229 | 159 | 5 | 221 | 446 | 329 | 552 | 1.33e-21 | 100 |
MS.gene21762.t1 | AT2G32250 | 27.074 | 229 | 159 | 5 | 221 | 446 | 329 | 552 | 1.44e-21 | 100 |
MS.gene21762.t1 | AT2G32250 | 27.074 | 229 | 159 | 5 | 221 | 446 | 329 | 552 | 1.44e-21 | 100 |
MS.gene21762.t1 | AT2G32250 | 27.074 | 229 | 159 | 5 | 221 | 446 | 329 | 552 | 1.47e-21 | 100 |
MS.gene21762.t1 | AT1G52520 | 26.432 | 227 | 138 | 4 | 238 | 445 | 420 | 636 | 4.17e-17 | 85.9 |
MS.gene21762.t1 | AT1G10240 | 26.291 | 213 | 149 | 4 | 234 | 444 | 398 | 604 | 8.04e-17 | 84.7 |
MS.gene21762.t1 | AT1G10240 | 28.095 | 210 | 144 | 4 | 18 | 221 | 49 | 257 | 2.75e-12 | 70.5 |
MS.gene21762.t1 | AT1G10240 | 26.291 | 213 | 149 | 4 | 234 | 444 | 398 | 604 | 8.04e-17 | 84.7 |
MS.gene21762.t1 | AT1G10240 | 28.095 | 210 | 144 | 4 | 18 | 221 | 49 | 257 | 2.75e-12 | 70.5 |
MS.gene21762.t1 | AT5G28530 | 24.554 | 224 | 154 | 4 | 237 | 455 | 353 | 566 | 4.62e-14 | 75.9 |
MS.gene21762.t1 | AT5G28530 | 24.554 | 224 | 154 | 4 | 237 | 455 | 416 | 629 | 4.80e-14 | 75.9 |
MS.gene21762.t1 | AT5G28530 | 24.554 | 224 | 150 | 4 | 237 | 455 | 353 | 562 | 1.16e-13 | 74.7 |
MS.gene21762.t1 | AT5G28530 | 24.554 | 224 | 150 | 4 | 237 | 455 | 416 | 625 | 1.37e-13 | 74.3 |
MS.gene21762.t1 | AT5G28530 | 24.554 | 224 | 150 | 4 | 237 | 455 | 416 | 625 | 1.37e-13 | 74.3 |
MS.gene21762.t1 | AT1G80010 | 22.086 | 326 | 216 | 8 | 213 | 521 | 421 | 725 | 4.39e-11 | 66.6 |
Find 96 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACAAATATTTGGAGTTATTT+AGG | 0.112891 | 5.2:+1903059 | MS.gene21762:CDS |
GAATCACGTTTGACCTCTTT+TGG | 0.206656 | 5.2:+1903257 | MS.gene21762:CDS |
TTCTGTGTTTGAATTTAAAT+TGG | 0.213517 | 5.2:-1904541 | None:intergenic |
ATTATTCTTAAACCCTTCTT+TGG | 0.257903 | 5.2:-1902805 | None:intergenic |
CAAATATTTGGAGTTATTTA+GGG | 0.270669 | 5.2:+1903060 | MS.gene21762:CDS |
GTCATTCCTTTGGTCTTTGC+CGG | 0.288457 | 5.2:-1904627 | None:intergenic |
CCTTTCTGAAGGCATATTCT+TGG | 0.293242 | 5.2:-1902704 | None:intergenic |
GTATGCGAGTTACAAATATT+TGG | 0.295956 | 5.2:+1903048 | MS.gene21762:CDS |
TCCTTCATTAGATATGTTAC+AGG | 0.315515 | 5.2:+1904896 | MS.gene21762:CDS |
CTTCTGTGCTCTTATTTGTA+TGG | 0.320280 | 5.2:-1904338 | None:intergenic |
GTCTTATTATAATTTAGTTT+TGG | 0.324636 | 5.2:+1904431 | MS.gene21762:CDS |
TCTGTGTTTGAATTTAAATT+GGG | 0.367129 | 5.2:-1904540 | None:intergenic |
ATGAATTCCTATCAACTTCA+TGG | 0.368033 | 5.2:+1903721 | MS.gene21762:CDS |
CATTCACCATGGACTTTATG+AGG | 0.372652 | 5.2:-1903022 | None:intergenic |
CAGGTTATAAAAGTGCAGTC+TGG | 0.397734 | 5.2:+1905496 | MS.gene21762:intron |
CCTTTGGTCTTTGCCGGACG+TGG | 0.403247 | 5.2:-1904621 | None:intergenic |
TCTTTGTAGTCATGCATTGC+GGG | 0.414873 | 5.2:+1904230 | MS.gene21762:CDS |
TCTCAACCCGTTGAAATTGA+TGG | 0.428719 | 5.2:+1902621 | MS.gene21762:CDS |
GAGAGTACAAATAGTGTGTT+GGG | 0.432233 | 5.2:+1903844 | MS.gene21762:CDS |
TTGTCATAAGTTTGATTCCA+TGG | 0.432438 | 5.2:+1904203 | MS.gene21762:CDS |
AGATTTAATGTGAGCAAGGA+AGG | 0.436528 | 5.2:+1902891 | MS.gene21762:CDS |
GACATTTGACATATTTCTCA+TGG | 0.442957 | 5.2:-1902991 | None:intergenic |
TGAGAGTACAAATAGTGTGT+TGG | 0.452339 | 5.2:+1903843 | MS.gene21762:CDS |
CCAATACATTGTCGAACCTT+CGG | 0.457360 | 5.2:-1904513 | None:intergenic |
CCGAAGGTTCGACAATGTAT+TGG | 0.459720 | 5.2:+1904513 | MS.gene21762:CDS |
ACGAACATTAGTCATTCCTT+TGG | 0.461296 | 5.2:-1904637 | None:intergenic |
ATGACTAATGTTCGTAAGAA+AGG | 0.462988 | 5.2:+1904645 | MS.gene21762:CDS |
AAGCTGAAATTGATTGAAGC+TGG | 0.470684 | 5.2:+1903152 | MS.gene21762:CDS |
CGCAACAAATGCCTTTGCTC+AGG | 0.473041 | 5.2:-1902966 | None:intergenic |
TTTGTGACCATGAAGTTGAT+AGG | 0.476903 | 5.2:-1903728 | None:intergenic |
CAAGAATATGCCTTCAGAAA+GGG | 0.477601 | 5.2:+1902705 | MS.gene21762:CDS |
AGCTGAAATTGATTGAAGCT+GGG | 0.479699 | 5.2:+1903153 | MS.gene21762:CDS |
ATTTACCATCTCTCCAAAAG+AGG | 0.480323 | 5.2:-1903270 | None:intergenic |
GACGGTTTCTAATCCACGTC+CGG | 0.481007 | 5.2:+1904608 | MS.gene21762:CDS |
AGGTTATAAAAGTGCAGTCT+GGG | 0.483789 | 5.2:+1905497 | MS.gene21762:intron |
TTGGAGTTATTTAGGGGAAG+AGG | 0.485109 | 5.2:+1903067 | MS.gene21762:CDS |
AAGAGGAATTTCAAAGCACT+TGG | 0.487235 | 5.2:+1903689 | MS.gene21762:CDS |
AGTGTGTTGGGAGAGATTGT+AGG | 0.498551 | 5.2:+1903856 | MS.gene21762:CDS |
ATCAACTTCATGGTCACAAA+TGG | 0.499307 | 5.2:+1903731 | MS.gene21762:CDS |
TCTGACCCATCAATTTCAAC+GGG | 0.500790 | 5.2:-1902627 | None:intergenic |
TGTCATAAGTTTGATTCCAT+GGG | 0.503094 | 5.2:+1904204 | MS.gene21762:CDS |
TTCTGACCCATCAATTTCAA+CGG | 0.510463 | 5.2:-1902628 | None:intergenic |
ACCTGTAACATATCTAATGA+AGG | 0.511088 | 5.2:-1904897 | None:intergenic |
AATGAGTATCTTGATGGGAC+AGG | 0.511341 | 5.2:+1904054 | MS.gene21762:CDS |
AAGAACAAATTGCAAAGCTA+TGG | 0.512487 | 5.2:+1902866 | MS.gene21762:CDS |
ACAAATAAGAGCACAGAAGA+AGG | 0.515980 | 5.2:+1904342 | MS.gene21762:CDS |
CCAAGAATATGCCTTCAGAA+AGG | 0.516475 | 5.2:+1902704 | MS.gene21762:CDS |
CGAGGACAATGAATGCTTGA+CGG | 0.516812 | 5.2:+1904590 | MS.gene21762:CDS |
GCGACAATTAGAGGTTGAAA+AGG | 0.527986 | 5.2:+1903927 | MS.gene21762:CDS |
TTCTTTGTAGTCATGCATTG+CGG | 0.533194 | 5.2:+1904229 | MS.gene21762:CDS |
CTCAACCCGTTGAAATTGAT+GGG | 0.534737 | 5.2:+1902622 | MS.gene21762:CDS |
AATATTTGTAACTCGCATAC+CGG | 0.535536 | 5.2:-1903045 | None:intergenic |
AGAAATATGTCAAATGTCAA+AGG | 0.545496 | 5.2:+1902996 | MS.gene21762:CDS |
AACAAATGCCTTTGCTCAGG+TGG | 0.559202 | 5.2:-1902963 | None:intergenic |
GAAAGAATGCGACTCAGAAG+AGG | 0.559378 | 5.2:+1903672 | MS.gene21762:CDS |
GTCGGTGGATATAACAATCT+CGG | 0.563144 | 5.2:+1903089 | MS.gene21762:CDS |
AGTTATTTAGGGGAAGAGGT+CGG | 0.564345 | 5.2:+1903071 | MS.gene21762:CDS |
GCAAGTAATTCTTCAGTGGA+TGG | 0.564724 | 5.2:+1904825 | MS.gene21762:CDS |
CACACTAAAACCCTTTCTGA+AGG | 0.567547 | 5.2:-1902715 | None:intergenic |
ATAAAGTCCATGGTGAATGC+CGG | 0.567614 | 5.2:+1903026 | MS.gene21762:CDS |
TGTACTCTCACTCCTTTGAG+AGG | 0.568833 | 5.2:-1903830 | None:intergenic |
GCTTGATACTGCAGTTCCGA+AGG | 0.570615 | 5.2:+1904497 | MS.gene21762:CDS |
CCATGCAAGTAATTCTTCAG+TGG | 0.577546 | 5.2:+1904821 | MS.gene21762:CDS |
ACTTTGTTCCACCTGAGCAA+AGG | 0.578696 | 5.2:+1902955 | MS.gene21762:CDS |
GAAGGATAAACAACTGCAGA+AGG | 0.581877 | 5.2:-1904879 | None:intergenic |
TTTAAGAATAATGAATCTGA+AGG | 0.582819 | 5.2:+1902816 | MS.gene21762:CDS |
TGTATGAAATTCGTCACAAG+TGG | 0.587826 | 5.2:+1903764 | MS.gene21762:CDS |
TTTGGACTCTTCTACCGCAA+CGG | 0.595816 | 5.2:+1904170 | MS.gene21762:CDS |
GGTGAGATTTAATGTGAGCA+AGG | 0.596375 | 5.2:+1902887 | MS.gene21762:CDS |
CCACTGAAGAATTACTTGCA+TGG | 0.598732 | 5.2:-1904821 | None:intergenic |
CTGTTATTTATGACGCGAGG+AGG | 0.599410 | 5.2:-1903973 | None:intergenic |
AGGAGGCCTCATAAAGTCCA+TGG | 0.601163 | 5.2:+1903016 | MS.gene21762:CDS |
TCGCATACCGGCATTCACCA+TGG | 0.601352 | 5.2:-1903033 | None:intergenic |
AATGCTATAAATTATACGAA+CGG | 0.603612 | 5.2:+1904855 | MS.gene21762:CDS |
GACAGGTGCAAGCACTTCTG+TGG | 0.604877 | 5.2:+1904071 | MS.gene21762:CDS |
ATGTGAGCAAGGAAGGAGTG+TGG | 0.605680 | 5.2:+1902898 | MS.gene21762:CDS |
CCACGTCCGGCAAAGACCAA+AGG | 0.605682 | 5.2:+1904621 | MS.gene21762:CDS |
GCTCAGGTGGAACAAAGTCA+TGG | 0.606620 | 5.2:-1902950 | None:intergenic |
AAGACCGACATCATCACCAT+TGG | 0.607860 | 5.2:-1904385 | None:intergenic |
CTGGTATCAAATCCTCTCAA+AGG | 0.610021 | 5.2:+1903818 | MS.gene21762:CDS |
AGAGGAATTTCAAAGCACTT+GGG | 0.610268 | 5.2:+1903690 | MS.gene21762:CDS |
ATAACCAATGGTGATGATGT+CGG | 0.610590 | 5.2:+1904381 | MS.gene21762:CDS |
ATTATAATAAGACTTCAGAA+TGG | 0.615362 | 5.2:-1904421 | None:intergenic |
CGATAATATGTCATATCATG+AGG | 0.616676 | 5.2:+1904107 | MS.gene21762:CDS |
TATTTAGGGGAAGAGGTCGG+TGG | 0.620164 | 5.2:+1903074 | MS.gene21762:CDS |
ACTACAAGTTCAATAACCAA+TGG | 0.629006 | 5.2:+1904369 | MS.gene21762:CDS |
AAATATTTGGAGTTATTTAG+GGG | 0.630032 | 5.2:+1903061 | MS.gene21762:CDS |
GAACACTTTCTTGCAAAACG+AGG | 0.635297 | 5.2:+1904572 | MS.gene21762:CDS |
AATATGTCAAATGTCAAAGG+AGG | 0.636188 | 5.2:+1902999 | MS.gene21762:CDS |
GCTGAAATTGATTGAAGCTG+GGG | 0.639401 | 5.2:+1903154 | MS.gene21762:CDS |
TGCACACTATAATAGAACAT+AGG | 0.643887 | 5.2:-1903224 | None:intergenic |
AATTCGTCACAAGTGGAGCA+CGG | 0.645876 | 5.2:+1903771 | MS.gene21762:CDS |
TCACTGTTATTTATGACGCG+AGG | 0.660596 | 5.2:-1903976 | None:intergenic |
ATGACTACAAAGAATGCCCA+TGG | 0.670886 | 5.2:-1904220 | None:intergenic |
AAGACTTCAGAATGGCATTG+CGG | 0.687925 | 5.2:-1904413 | None:intergenic |
ACAACTGCAACTGACCGTTG+CGG | 0.722503 | 5.2:-1904184 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATACATATGTAATCTTTTTA+AGG | + | chr5.2:1905373-1905392 | MS.gene21762:intron | 15.0% |
!!! | GGTTATATTATTAAATTTTC+TGG | + | chr5.2:1905395-1905414 | MS.gene21762:intron | 15.0% |
!!! | GTCTTATTATAATTTAGTTT+TGG | + | chr5.2:1904431-1904450 | MS.gene21762:CDS | 15.0% |
!!! | TACATATGTAATCTTTTTAA+GGG | + | chr5.2:1905374-1905393 | MS.gene21762:intron | 15.0% |
!! | AATGCTATAAATTATACGAA+CGG | + | chr5.2:1904855-1904874 | MS.gene21762:CDS | 20.0% |
!! | AGAAAAGCAAAAAAAGATAA+AGG | + | chr5.2:1904696-1904715 | MS.gene21762:CDS | 20.0% |
!! | ATTATAATAAGACTTCAGAA+TGG | - | chr5.2:1904424-1904443 | None:intergenic | 20.0% |
!! | CTCATATAATTATTTAAGTC+AGG | + | chr5.2:1905050-1905069 | MS.gene21762:intron | 20.0% |
!! | CTCATTTAAAAAATGCTTAA+AGG | - | chr5.2:1904040-1904059 | None:intergenic | 20.0% |
!! | TCTGTGTTTGAATTTAAATT+GGG | - | chr5.2:1904543-1904562 | None:intergenic | 20.0% |
!! | TTCTGTGTTTGAATTTAAAT+TGG | - | chr5.2:1904544-1904563 | None:intergenic | 20.0% |
!! | TTTAAGAATAATGAATCTGA+AGG | + | chr5.2:1902816-1902835 | MS.gene21762:CDS | 20.0% |
!!! | AAATATTTGGAGTTATTTAG+GGG | + | chr5.2:1903061-1903080 | MS.gene21762:CDS | 20.0% |
!!! | AATATCTGCTTTGTTTATAT+AGG | + | chr5.2:1905419-1905438 | MS.gene21762:intron | 20.0% |
!!! | ACAAATATTTGGAGTTATTT+AGG | + | chr5.2:1903059-1903078 | MS.gene21762:CDS | 20.0% |
!!! | CAAATATTTGGAGTTATTTA+GGG | + | chr5.2:1903060-1903079 | MS.gene21762:CDS | 20.0% |
!!! | TAAATATTGTTTTTGGTTGT+TGG | - | chr5.2:1903498-1903517 | None:intergenic | 20.0% |
!!! | TGATCTGTAAATATTGTTTT+TGG | - | chr5.2:1903505-1903524 | None:intergenic | 20.0% |
!!! | TTTTAAATGAGTATCTTGAT+GGG | + | chr5.2:1904049-1904068 | MS.gene21762:CDS | 20.0% |
!!! | TTTTTAAATGAGTATCTTGA+TGG | + | chr5.2:1904048-1904067 | MS.gene21762:CDS | 20.0% |
! | ACAAATCAAGTCATACTTAT+TGG | - | chr5.2:1903353-1903372 | None:intergenic | 25.0% |
! | ACAATAATTTGATCTTAGGA+TGG | + | chr5.2:1905266-1905285 | MS.gene21762:intron | 25.0% |
! | AGAAATATGTCAAATGTCAA+AGG | + | chr5.2:1902996-1903015 | MS.gene21762:CDS | 25.0% |
! | ATTATTCTTAAACCCTTCTT+TGG | - | chr5.2:1902808-1902827 | None:intergenic | 25.0% |
! | CATTGGCAAAATGTAATATT+TGG | + | chr5.2:1903397-1903416 | MS.gene21762:intron | 25.0% |
! | GGTAACAATAATTTGATCTT+AGG | + | chr5.2:1905262-1905281 | MS.gene21762:intron | 25.0% |
! | TACTTTGAACAACCAATTAA+AGG | - | chr5.2:1903455-1903474 | None:intergenic | 25.0% |
!! | AAAGTTGATTATGATTGCTT+TGG | + | chr5.2:1903295-1903314 | MS.gene21762:intron | 25.0% |
!! | AAGTTGATTATGATTGCTTT+GGG | + | chr5.2:1903296-1903315 | MS.gene21762:intron | 25.0% |
!! | ACTAAAAATGTATTTTCTGC+TGG | + | chr5.2:1903799-1903818 | MS.gene21762:CDS | 25.0% |
!! | ATATTACATTTTGCCAATGA+TGG | - | chr5.2:1903396-1903415 | None:intergenic | 25.0% |
!! | CATACCCAATAAAAAGTATA+TGG | + | chr5.2:1904143-1904162 | MS.gene21762:CDS | 25.0% |
!! | TAAAAAGTATATGGTGACTT+TGG | + | chr5.2:1904152-1904171 | MS.gene21762:CDS | 25.0% |
!! | TCATTTAGTTCCTTATTACA+AGG | + | chr5.2:1905021-1905040 | MS.gene21762:intron | 25.0% |
!!! | AAAGTATTTTTGGAGAGTAT+GGG | + | chr5.2:1903469-1903488 | MS.gene21762:intron | 25.0% |
!!! | AGTCACCATATACTTTTTAT+TGG | - | chr5.2:1904151-1904170 | None:intergenic | 25.0% |
!!! | AGTTTTATTGTTCCAAAGAA+GGG | + | chr5.2:1902793-1902812 | MS.gene21762:CDS | 25.0% |
!!! | GGATGTTTTAAATGATACAA+TGG | + | chr5.2:1905287-1905306 | MS.gene21762:intron | 25.0% |
!!! | GTCACCATATACTTTTTATT+GGG | - | chr5.2:1904150-1904169 | None:intergenic | 25.0% |
!!! | TTGGTTGTTCAAAGTATTTT+TGG | + | chr5.2:1903459-1903478 | MS.gene21762:intron | 25.0% |
AAAAAATGCTCCTTCTCATT+TGG | + | chr5.2:1903600-1903619 | MS.gene21762:intron | 30.0% | |
AAAAATGCTCCTTCTCATTT+GGG | + | chr5.2:1903601-1903620 | MS.gene21762:intron | 30.0% | |
AAACCTCTGTTTCCTTTAAT+TGG | + | chr5.2:1903440-1903459 | MS.gene21762:intron | 30.0% | |
AAGAACAAATTGCAAAGCTA+TGG | + | chr5.2:1902866-1902885 | MS.gene21762:CDS | 30.0% | |
AAGAAGCAAGAAAAATCATG+TGG | + | chr5.2:1904469-1904488 | MS.gene21762:CDS | 30.0% | |
AAGGAACTAAATGAAGTTGA+TGG | - | chr5.2:1905015-1905034 | None:intergenic | 30.0% | |
AATATGTCAAATGTCAAAGG+AGG | + | chr5.2:1902999-1903018 | MS.gene21762:CDS | 30.0% | |
AATATTTGTAACTCGCATAC+CGG | - | chr5.2:1903048-1903067 | None:intergenic | 30.0% | |
ACCAGTACATCTTAAAAAGA+TGG | + | chr5.2:1904286-1904305 | MS.gene21762:CDS | 30.0% | |
ACCTGTAACATATCTAATGA+AGG | - | chr5.2:1904900-1904919 | None:intergenic | 30.0% | |
ACTACAAGTTCAATAACCAA+TGG | + | chr5.2:1904369-1904388 | MS.gene21762:CDS | 30.0% | |
AGAAGCAAGAAAAATCATGT+GGG | + | chr5.2:1904470-1904489 | MS.gene21762:CDS | 30.0% | |
AGAGGTTTCATTAAGTAACA+AGG | - | chr5.2:1903428-1903447 | None:intergenic | 30.0% | |
AGTTGATTATGATTGCTTTG+GGG | + | chr5.2:1903297-1903316 | MS.gene21762:intron | 30.0% | |
ATGAATTCCTATCAACTTCA+TGG | + | chr5.2:1903721-1903740 | MS.gene21762:CDS | 30.0% | |
ATGACTAATGTTCGTAAGAA+AGG | + | chr5.2:1904645-1904664 | MS.gene21762:CDS | 30.0% | |
CAAGTAACAATACTTAAGAC+AGG | + | chr5.2:1905241-1905260 | MS.gene21762:intron | 30.0% | |
CGATAATATGTCATATCATG+AGG | + | chr5.2:1904107-1904126 | MS.gene21762:CDS | 30.0% | |
GACATTTGACATATTTCTCA+TGG | - | chr5.2:1902994-1903013 | None:intergenic | 30.0% | |
GTATGCGAGTTACAAATATT+TGG | + | chr5.2:1903048-1903067 | MS.gene21762:CDS | 30.0% | |
TCCTTCATTAGATATGTTAC+AGG | + | chr5.2:1904896-1904915 | MS.gene21762:CDS | 30.0% | |
TGCACACTATAATAGAACAT+AGG | - | chr5.2:1903227-1903246 | None:intergenic | 30.0% | |
TGTCATAAGTTTGATTCCAT+GGG | + | chr5.2:1904204-1904223 | MS.gene21762:CDS | 30.0% | |
TTGTCATAAGTTTGATTCCA+TGG | + | chr5.2:1904203-1904222 | MS.gene21762:CDS | 30.0% | |
! | AATTTTGCAACATGCATCTA+TGG | + | chr5.2:1903999-1904018 | MS.gene21762:CDS | 30.0% |
! | ATGGATTATGTTGCTGTTAT+AGG | - | chr5.2:1904996-1905015 | None:intergenic | 30.0% |
! | CTGTCTTAAGTATTGTTACT+TGG | - | chr5.2:1905243-1905262 | None:intergenic | 30.0% |
! | TCTTAAGTATTGTTACTTGG+AGG | - | chr5.2:1905240-1905259 | None:intergenic | 30.0% |
! | TTGCAGCAATCTTCTAATTT+TGG | + | chr5.2:1905207-1905226 | MS.gene21762:intron | 30.0% |
!! | AGCAATCTTCTAATTTTGGT+TGG | + | chr5.2:1905211-1905230 | MS.gene21762:intron | 30.0% |
!!! | ACCATCTTTTTAAGATGTAC+TGG | - | chr5.2:1904290-1904309 | None:intergenic | 30.0% |
!!! | CAAAGTATTTTTGGAGAGTA+TGG | + | chr5.2:1903468-1903487 | MS.gene21762:intron | 30.0% |
!!! | CACACAATTTTTTGAGAAGA+TGG | + | chr5.2:1903894-1903913 | MS.gene21762:CDS | 30.0% |
!!! | GAGTTTTATTGTTCCAAAGA+AGG | + | chr5.2:1902792-1902811 | MS.gene21762:CDS | 30.0% |
!!! | GCAATCTTCTAATTTTGGTT+GGG | + | chr5.2:1905212-1905231 | MS.gene21762:intron | 30.0% |
AAGCTGAAATTGATTGAAGC+TGG | + | chr5.2:1903152-1903171 | MS.gene21762:CDS | 35.0% | |
ACGAACATTAGTCATTCCTT+TGG | - | chr5.2:1904640-1904659 | None:intergenic | 35.0% | |
AGATTTAATGTGAGCAAGGA+AGG | + | chr5.2:1902891-1902910 | MS.gene21762:CDS | 35.0% | |
AGCTGAAATTGATTGAAGCT+GGG | + | chr5.2:1903153-1903172 | MS.gene21762:CDS | 35.0% | |
ATCAACTTCATGGTCACAAA+TGG | + | chr5.2:1903731-1903750 | MS.gene21762:CDS | 35.0% | |
ATGGTTTACACCAACAAATG+GGG | - | chr5.2:1903377-1903396 | None:intergenic | 35.0% | |
ATTTACCATCTCTCCAAAAG+AGG | - | chr5.2:1903273-1903292 | None:intergenic | 35.0% | |
CAACCAATTAAAGGAAACAG+AGG | - | chr5.2:1903446-1903465 | None:intergenic | 35.0% | |
CAAGAATATGCCTTCAGAAA+GGG | + | chr5.2:1902705-1902724 | MS.gene21762:CDS | 35.0% | |
CATGTCATCGTTTGTGTTTA+TGG | + | chr5.2:1903569-1903588 | MS.gene21762:intron | 35.0% | |
GATGGTTTACACCAACAAAT+GGG | - | chr5.2:1903378-1903397 | None:intergenic | 35.0% | |
GTAGTAGGATCAAAACATCT+TGG | - | chr5.2:1905450-1905469 | None:intergenic | 35.0% | |
TGAAAAACACAGTAAACCAG+TGG | - | chr5.2:1905478-1905497 | None:intergenic | 35.0% | |
TGAGTTCACTCCTTGTAATA+AGG | - | chr5.2:1905034-1905053 | None:intergenic | 35.0% | |
TGATGGTTTACACCAACAAA+TGG | - | chr5.2:1903379-1903398 | None:intergenic | 35.0% | |
TGTATGAAATTCGTCACAAG+TGG | + | chr5.2:1903764-1903783 | MS.gene21762:CDS | 35.0% | |
TTCTGACCCATCAATTTCAA+CGG | - | chr5.2:1902631-1902650 | None:intergenic | 35.0% | |
TTCTTTGTAGTCATGCATTG+CGG | + | chr5.2:1904229-1904248 | MS.gene21762:CDS | 35.0% | |
TTGAGAAGATGGTGAAAAAG+TGG | + | chr5.2:1903905-1903924 | MS.gene21762:CDS | 35.0% | |
TTGTTGGTGTAAACCATCAT+TGG | + | chr5.2:1903380-1903399 | MS.gene21762:intron | 35.0% | |
! | AAGAGGAATTTCAAAGCACT+TGG | + | chr5.2:1903689-1903708 | MS.gene21762:CDS | 35.0% |
! | ACAAATAAGAGCACAGAAGA+AGG | + | chr5.2:1904342-1904361 | MS.gene21762:CDS | 35.0% |
! | AGAGGAATTTCAAAGCACTT+GGG | + | chr5.2:1903690-1903709 | MS.gene21762:CDS | 35.0% |
! | AGGTTATAAAAGTGCAGTCT+GGG | + | chr5.2:1905497-1905516 | MS.gene21762:intron | 35.0% |
! | ATAACCAATGGTGATGATGT+CGG | + | chr5.2:1904381-1904400 | MS.gene21762:CDS | 35.0% |
! | CTTCTGTGCTCTTATTTGTA+TGG | - | chr5.2:1904341-1904360 | None:intergenic | 35.0% |
! | GAGAGTACAAATAGTGTGTT+GGG | + | chr5.2:1903844-1903863 | MS.gene21762:CDS | 35.0% |
! | GGGTCAGAAGAAATTTTTCT+TGG | + | chr5.2:1902642-1902661 | MS.gene21762:CDS | 35.0% |
! | TGAGAGTACAAATAGTGTGT+TGG | + | chr5.2:1903843-1903862 | MS.gene21762:CDS | 35.0% |
! | TTTGTGACCATGAAGTTGAT+AGG | - | chr5.2:1903731-1903750 | None:intergenic | 35.0% |
!! | AAAGGGTTTTAGTGTGAGAA+AGG | + | chr5.2:1902722-1902741 | MS.gene21762:CDS | 35.0% |
!! | AAGGGTTTTAGTGTGAGAAA+GGG | + | chr5.2:1902723-1902742 | MS.gene21762:CDS | 35.0% |
!! | ACTGGTTTACTGTGTTTTTC+AGG | + | chr5.2:1905477-1905496 | MS.gene21762:intron | 35.0% |
!!! | CTTTTTAAGATGTACTGGTC+TGG | - | chr5.2:1904285-1904304 | None:intergenic | 35.0% |
AAACCAGTGGCTATAGTAGT+AGG | - | chr5.2:1905465-1905484 | None:intergenic | 40.0% | |
AAGACTTCAGAATGGCATTG+CGG | - | chr5.2:1904416-1904435 | None:intergenic | 40.0% | |
AATGAGTATCTTGATGGGAC+AGG | + | chr5.2:1904054-1904073 | MS.gene21762:CDS | 40.0% | |
AGTTATTTAGGGGAAGAGGT+CGG | + | chr5.2:1903071-1903090 | MS.gene21762:CDS | 40.0% | |
ATAAAGTCCATGGTGAATGC+CGG | + | chr5.2:1903026-1903045 | MS.gene21762:CDS | 40.0% | |
ATGACTACAAAGAATGCCCA+TGG | - | chr5.2:1904223-1904242 | None:intergenic | 40.0% | |
CACAAACGATGACATGCATT+TGG | - | chr5.2:1903565-1903584 | None:intergenic | 40.0% | |
CACACTAAAACCCTTTCTGA+AGG | - | chr5.2:1902718-1902737 | None:intergenic | 40.0% | |
CATTCACCATGGACTTTATG+AGG | - | chr5.2:1903025-1903044 | None:intergenic | 40.0% | |
CCAAGAATATGCCTTCAGAA+AGG | + | chr5.2:1902704-1902723 | MS.gene21762:CDS | 40.0% | |
CCAATACATTGTCGAACCTT+CGG | - | chr5.2:1904516-1904535 | None:intergenic | 40.0% | |
CCACTGAAGAATTACTTGCA+TGG | - | chr5.2:1904824-1904843 | None:intergenic | 40.0% | |
CCATGCAAGTAATTCTTCAG+TGG | + | chr5.2:1904821-1904840 | MS.gene21762:CDS | 40.0% | |
CCGTGACAAATCAGTATGTA+CGG | - | chr5.2:1905168-1905187 | None:intergenic | 40.0% | |
CTCAACCCGTTGAAATTGAT+GGG | + | chr5.2:1902622-1902641 | MS.gene21762:CDS | 40.0% | |
CTGGTATCAAATCCTCTCAA+AGG | + | chr5.2:1903818-1903837 | MS.gene21762:CDS | 40.0% | |
GAAAAAGTGGCGACAATTAG+AGG | + | chr5.2:1903918-1903937 | MS.gene21762:CDS | 40.0% | |
GAACACTTTCTTGCAAAACG+AGG | + | chr5.2:1904572-1904591 | MS.gene21762:CDS | 40.0% | |
GAAGGATAAACAACTGCAGA+AGG | - | chr5.2:1904882-1904901 | None:intergenic | 40.0% | |
GCAAGTAATTCTTCAGTGGA+TGG | + | chr5.2:1904825-1904844 | MS.gene21762:CDS | 40.0% | |
GCGACAATTAGAGGTTGAAA+AGG | + | chr5.2:1903927-1903946 | MS.gene21762:CDS | 40.0% | |
GCTGAAATTGATTGAAGCTG+GGG | + | chr5.2:1903154-1903173 | MS.gene21762:CDS | 40.0% | |
GGTGAGATTTAATGTGAGCA+AGG | + | chr5.2:1902887-1902906 | MS.gene21762:CDS | 40.0% | |
GTCGGTGGATATAACAATCT+CGG | + | chr5.2:1903089-1903108 | MS.gene21762:CDS | 40.0% | |
TAGGATCAAAACATCTTGGC+TGG | - | chr5.2:1905446-1905465 | None:intergenic | 40.0% | |
TCTCAACCCGTTGAAATTGA+TGG | + | chr5.2:1902621-1902640 | MS.gene21762:CDS | 40.0% | |
TCTGACCCATCAATTTCAAC+GGG | - | chr5.2:1902630-1902649 | None:intergenic | 40.0% | |
TCTTTGTAGTCATGCATTGC+GGG | + | chr5.2:1904230-1904249 | MS.gene21762:CDS | 40.0% | |
TTGAGAGATCCCAAATGAGA+AGG | - | chr5.2:1903613-1903632 | None:intergenic | 40.0% | |
TTGGAGTTATTTAGGGGAAG+AGG | + | chr5.2:1903067-1903086 | MS.gene21762:CDS | 40.0% | |
! | CAGGTTATAAAAGTGCAGTC+TGG | + | chr5.2:1905496-1905515 | MS.gene21762:intron | 40.0% |
! | CCTTTCTGAAGGCATATTCT+TGG | - | chr5.2:1902707-1902726 | None:intergenic | 40.0% |
! | GAATCACGTTTGACCTCTTT+TGG | + | chr5.2:1903257-1903276 | MS.gene21762:CDS | 40.0% |
! | TCACTGTTATTTATGACGCG+AGG | - | chr5.2:1903979-1903998 | None:intergenic | 40.0% |
!! | AGGGTTTTAGTGTGAGAAAG+GGG | + | chr5.2:1902724-1902743 | MS.gene21762:CDS | 40.0% |
!! | CCGTACATACTGATTTGTCA+CGG | + | chr5.2:1905165-1905184 | MS.gene21762:intron | 40.0% |
!! | CGTACATACTGATTTGTCAC+GGG | + | chr5.2:1905166-1905185 | MS.gene21762:intron | 40.0% |
!! | TTGATTTGTGCCCCATTTGT+TGG | + | chr5.2:1903364-1903383 | MS.gene21762:intron | 40.0% |
!! | TTTGACCTCTTTTGGAGAGA+TGG | + | chr5.2:1903265-1903284 | MS.gene21762:CDS | 40.0% |
AACAAATGCCTTTGCTCAGG+TGG | - | chr5.2:1902966-1902985 | None:intergenic | 45.0% | |
AAGACCGACATCATCACCAT+TGG | - | chr5.2:1904388-1904407 | None:intergenic | 45.0% | |
AATTCGTCACAAGTGGAGCA+CGG | + | chr5.2:1903771-1903790 | MS.gene21762:CDS | 45.0% | |
ACAGATCAAGCTGCAGCTAT+GGG | + | chr5.2:1903517-1903536 | MS.gene21762:intron | 45.0% | |
ACTTTGTTCCACCTGAGCAA+AGG | + | chr5.2:1902955-1902974 | MS.gene21762:CDS | 45.0% | |
AGTGTGTTGGGAGAGATTGT+AGG | + | chr5.2:1903856-1903875 | MS.gene21762:CDS | 45.0% | |
CCGAAGGTTCGACAATGTAT+TGG | + | chr5.2:1904513-1904532 | MS.gene21762:CDS | 45.0% | |
CGAGGACAATGAATGCTTGA+CGG | + | chr5.2:1904590-1904609 | MS.gene21762:CDS | 45.0% | |
GAAAGAATGCGACTCAGAAG+AGG | + | chr5.2:1903672-1903691 | MS.gene21762:CDS | 45.0% | |
GATCCTACTACTATAGCCAC+TGG | + | chr5.2:1905459-1905478 | MS.gene21762:intron | 45.0% | |
TACAGATCAAGCTGCAGCTA+TGG | + | chr5.2:1903516-1903535 | MS.gene21762:intron | 45.0% | |
TGTACTCTCACTCCTTTGAG+AGG | - | chr5.2:1903833-1903852 | None:intergenic | 45.0% | |
TTTGGACTCTTCTACCGCAA+CGG | + | chr5.2:1904170-1904189 | MS.gene21762:CDS | 45.0% | |
! | CTGTTATTTATGACGCGAGG+AGG | - | chr5.2:1903976-1903995 | None:intergenic | 45.0% |
! | GTCATTCCTTTGGTCTTTGC+CGG | - | chr5.2:1904630-1904649 | None:intergenic | 45.0% |
ACAACTGCAACTGACCGTTG+CGG | - | chr5.2:1904187-1904206 | None:intergenic | 50.0% | |
AGGAGGCCTCATAAAGTCCA+TGG | + | chr5.2:1903016-1903035 | MS.gene21762:CDS | 50.0% | |
ATGTGAGCAAGGAAGGAGTG+TGG | + | chr5.2:1902898-1902917 | MS.gene21762:CDS | 50.0% | |
CGCAACAAATGCCTTTGCTC+AGG | - | chr5.2:1902969-1902988 | None:intergenic | 50.0% | |
GACGGTTTCTAATCCACGTC+CGG | + | chr5.2:1904608-1904627 | MS.gene21762:CDS | 50.0% | |
GCAGCTATGGGCAAAGCAAT+CGG | + | chr5.2:1903529-1903548 | MS.gene21762:intron | 50.0% | |
GCTCAGGTGGAACAAAGTCA+TGG | - | chr5.2:1902953-1902972 | None:intergenic | 50.0% | |
GCTTGATACTGCAGTTCCGA+AGG | + | chr5.2:1904497-1904516 | MS.gene21762:CDS | 50.0% | |
TATTTAGGGGAAGAGGTCGG+TGG | + | chr5.2:1903074-1903093 | MS.gene21762:CDS | 50.0% | |
GACAGGTGCAAGCACTTCTG+TGG | + | chr5.2:1904071-1904090 | MS.gene21762:CDS | 55.0% | |
TCGCATACCGGCATTCACCA+TGG | - | chr5.2:1903036-1903055 | None:intergenic | 55.0% | |
CCACGTCCGGCAAAGACCAA+AGG | + | chr5.2:1904621-1904640 | MS.gene21762:CDS | 60.0% | |
! | CCTTTGGTCTTTGCCGGACG+TGG | - | chr5.2:1904624-1904643 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.2 | gene | 1902606 | 1905537 | 1902606 | ID=MS.gene21762 |
chr5.2 | mRNA | 1902606 | 1905537 | 1902606 | ID=MS.gene21762.t1;Parent=MS.gene21762 |
chr5.2 | exon | 1902606 | 1903286 | 1902606 | ID=MS.gene21762.t1.exon1;Parent=MS.gene21762.t1 |
chr5.2 | CDS | 1902606 | 1903286 | 1902606 | ID=cds.MS.gene21762.t1;Parent=MS.gene21762.t1 |
chr5.2 | exon | 1903664 | 1904717 | 1903664 | ID=MS.gene21762.t1.exon2;Parent=MS.gene21762.t1 |
chr5.2 | CDS | 1903664 | 1904717 | 1903664 | ID=cds.MS.gene21762.t1;Parent=MS.gene21762.t1 |
chr5.2 | exon | 1904799 | 1904917 | 1904799 | ID=MS.gene21762.t1.exon3;Parent=MS.gene21762.t1 |
chr5.2 | CDS | 1904799 | 1904917 | 1904799 | ID=cds.MS.gene21762.t1;Parent=MS.gene21762.t1 |
chr5.2 | exon | 1905499 | 1905537 | 1905499 | ID=MS.gene21762.t1.exon4;Parent=MS.gene21762.t1 |
chr5.2 | CDS | 1905499 | 1905537 | 1905499 | ID=cds.MS.gene21762.t1;Parent=MS.gene21762.t1 |
Gene Sequence |
Protein sequence |