Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21775.t1 | RHN76102.1 | 85.9 | 92 | 13 | 0 | 10 | 101 | 264 | 355 | 4.10E-34 | 154.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21775.t1 | Q9XE58 | 51.1 | 88 | 41 | 1 | 13 | 98 | 362 | 449 | 1.7e-17 | 90.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21775.t1 | G7IRV1 | 85.9 | 92 | 13 | 0 | 10 | 101 | 336 | 427 | 2.9e-34 | 154.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene21775.t1 | TF | GRAS |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21775.t1 | MTR_2g097410 | 85.870 | 92 | 13 | 0 | 10 | 101 | 336 | 427 | 3.45e-46 | 162 |
| MS.gene21775.t1 | MTR_4g064150 | 61.333 | 75 | 29 | 0 | 24 | 98 | 340 | 414 | 6.56e-27 | 107 |
| MS.gene21775.t1 | MTR_3g087300 | 89.091 | 55 | 6 | 0 | 10 | 64 | 154 | 208 | 8.38e-27 | 101 |
| MS.gene21775.t1 | MTR_4g064160 | 57.647 | 85 | 36 | 0 | 14 | 98 | 285 | 369 | 5.14e-25 | 102 |
| MS.gene21775.t1 | MTR_4g064120 | 59.494 | 79 | 30 | 1 | 26 | 102 | 235 | 313 | 3.09e-24 | 99.8 |
| MS.gene21775.t1 | MTR_7g062120 | 57.895 | 76 | 32 | 0 | 27 | 102 | 354 | 429 | 5.46e-23 | 96.3 |
| MS.gene21775.t1 | MTR_4g064180 | 58.571 | 70 | 29 | 0 | 26 | 95 | 235 | 304 | 4.89e-22 | 93.2 |
| MS.gene21775.t1 | MTR_2g097390 | 50.602 | 83 | 41 | 0 | 16 | 98 | 246 | 328 | 1.22e-20 | 89.4 |
| MS.gene21775.t1 | MTR_2g097350 | 53.623 | 69 | 32 | 0 | 31 | 99 | 260 | 328 | 2.89e-20 | 88.2 |
| MS.gene21775.t1 | MTR_2g097310 | 50.725 | 69 | 34 | 0 | 31 | 99 | 258 | 326 | 7.82e-19 | 84.0 |
| MS.gene21775.t1 | MTR_2g097463 | 39.370 | 127 | 63 | 3 | 23 | 136 | 260 | 385 | 6.29e-18 | 81.6 |
| MS.gene21775.t1 | MTR_2g097467 | 55.882 | 68 | 28 | 1 | 31 | 96 | 273 | 340 | 5.17e-16 | 75.9 |
| MS.gene21775.t1 | MTR_2g097473 | 41.379 | 116 | 55 | 3 | 25 | 128 | 262 | 376 | 1.29e-15 | 74.7 |
| MS.gene21775.t1 | MTR_4g064200 | 58.929 | 56 | 23 | 0 | 39 | 94 | 278 | 333 | 4.68e-15 | 73.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21775.t1 | AT1G07530 | 51.136 | 88 | 41 | 1 | 13 | 98 | 362 | 449 | 2.44e-22 | 94.4 |
| MS.gene21775.t1 | AT1G07520 | 39.073 | 151 | 87 | 2 | 9 | 157 | 116 | 263 | 8.17e-22 | 92.8 |
| MS.gene21775.t1 | AT1G07520 | 39.073 | 151 | 87 | 2 | 9 | 157 | 116 | 263 | 8.17e-22 | 92.8 |
| MS.gene21775.t1 | AT1G07520 | 39.073 | 151 | 87 | 2 | 9 | 157 | 280 | 427 | 8.38e-22 | 92.8 |
| MS.gene21775.t1 | AT1G07520 | 39.073 | 151 | 87 | 2 | 9 | 157 | 281 | 428 | 8.46e-22 | 92.8 |
| MS.gene21775.t1 | AT2G37650 | 55.714 | 70 | 31 | 0 | 33 | 102 | 335 | 404 | 1.59e-18 | 83.2 |
| MS.gene21775.t1 | AT2G37650 | 55.714 | 70 | 31 | 0 | 33 | 102 | 323 | 392 | 1.71e-18 | 83.2 |
| MS.gene21775.t1 | AT2G29060 | 48.718 | 78 | 40 | 0 | 25 | 102 | 264 | 341 | 4.72e-18 | 82.0 |
| MS.gene21775.t1 | AT2G29060 | 48.718 | 78 | 40 | 0 | 25 | 102 | 301 | 378 | 5.21e-18 | 81.6 |
| MS.gene21775.t1 | AT2G29065 | 57.627 | 59 | 25 | 0 | 39 | 97 | 246 | 304 | 1.65e-13 | 68.6 |
| MS.gene21775.t1 | AT5G59450 | 46.377 | 69 | 37 | 0 | 28 | 96 | 210 | 278 | 2.22e-13 | 68.2 |
| MS.gene21775.t1 | AT3G46600 | 45.070 | 71 | 39 | 0 | 26 | 96 | 161 | 231 | 1.28e-12 | 66.2 |
| MS.gene21775.t1 | AT3G46600 | 45.070 | 71 | 39 | 0 | 26 | 96 | 193 | 263 | 1.47e-12 | 65.9 |
Find 51 sgRNAs with CRISPR-Local
Find 91 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTTGGAACCCGAAGTGTTT+TGG | 0.241649 | 5.2:-1743961 | None:intergenic |
| TTGGATCACTTGCAAGGATA+TGG | 0.297228 | 5.2:+1743435 | MS.gene21775:CDS |
| AGGAAGCATTCTTGTCCTTC+AGG | 0.304700 | 5.2:+1742965 | MS.gene21775:CDS |
| CTGCTACACTTACATACCTT+TGG | 0.328180 | 5.2:+1743416 | MS.gene21775:CDS |
| GGCAGTTACTTTCTTGCCTC+AGG | 0.350572 | 5.2:+1743144 | MS.gene21775:intron |
| ATGAATTGTTGAAGCAGATT+AGG | 0.368680 | 5.2:+1742945 | MS.gene21775:CDS |
| TGTGGATTTGAGGACCCTTT+TGG | 0.385294 | 5.2:+1742877 | MS.gene21775:CDS |
| CAGGTTCTACATGGTGCATC+TGG | 0.398474 | 5.2:+1742691 | MS.gene21775:intron |
| ACAGGGAGAACAAGCTTTGT+TGG | 0.399351 | 5.2:+1743342 | MS.gene21775:intron |
| AACACTTCGGGTTCCAAGCC+TGG | 0.402067 | 5.2:+1743965 | MS.gene21775:CDS |
| CTGTGTCTGCTAATGACAAT+AGG | 0.426533 | 5.2:+1742915 | MS.gene21775:CDS |
| GAGATGCTTCTTTCTGTCCA+TGG | 0.428796 | 5.2:+1743989 | MS.gene21775:CDS |
| GTCTATTGTATAGGCTTTGG+AGG | 0.440001 | 5.2:+1743733 | MS.gene21775:intron |
| GATGACACCCAAAACACTTC+GGG | 0.448978 | 5.2:+1743953 | MS.gene21775:CDS |
| AGAAGGATGTTGTGGATTTG+AGG | 0.449422 | 5.2:+1742867 | MS.gene21775:CDS |
| TGCTGATAATCTGTGTTTCA+AGG | 0.456022 | 5.2:+1743365 | MS.gene21775:CDS |
| ACACAGGTTGGTGAACTTGA+TGG | 0.468419 | 5.2:+1742812 | MS.gene21775:CDS |
| CAAGAAGGTCTTCTGACTCC+TGG | 0.484397 | 5.2:+1743785 | MS.gene21775:CDS |
| AAGAAGCATCTCTCCAGGCT+TGG | 0.487378 | 5.2:-1743978 | None:intergenic |
| TCTGTCCATGGATCACCCCT+AGG | 0.525999 | 5.2:+1744001 | MS.gene21775:CDS |
| GGATGACACCCAAAACACTT+CGG | 0.531639 | 5.2:+1743952 | MS.gene21775:CDS |
| ATACCTTTGGATCACTTGCA+AGG | 0.533675 | 5.2:+1743429 | MS.gene21775:CDS |
| CTCTGTGATGCATCACCTGA+AGG | 0.537655 | 5.2:-1742980 | None:intergenic |
| GCAGTTACTTTCTTGCCTCA+GGG | 0.540939 | 5.2:+1743145 | MS.gene21775:intron |
| AGGGAGGAAGAAGGATGTTG+TGG | 0.542775 | 5.2:+1742859 | MS.gene21775:CDS |
| GAAGTGCTCATGGTTGGTGC+TGG | 0.542798 | 5.2:+1743031 | MS.gene21775:CDS |
| CTTGTGCACACAGAACCAAA+AGG | 0.550869 | 5.2:-1742892 | None:intergenic |
| ACAGAAAGAAGCATCTCTCC+AGG | 0.551277 | 5.2:-1743983 | None:intergenic |
| CTCATGGTTGGTGCTGGTAA+CGG | 0.557297 | 5.2:+1743037 | MS.gene21775:CDS |
| TGCAAAGATTGAAAATGTTG+AGG | 0.562117 | 5.2:+1742589 | None:intergenic |
| TTGTGCACACAGAACCAAAA+GGG | 0.577974 | 5.2:-1742891 | None:intergenic |
| GAAGAAACAAGGGAGGAAGA+AGG | 0.580210 | 5.2:+1742850 | MS.gene21775:CDS |
| AGTTACTTTCTTGCCTCAGG+GGG | 0.601989 | 5.2:+1743147 | MS.gene21775:intron |
| AGGTGATGCATCACAGAGAA+CGG | 0.608660 | 5.2:+1742985 | MS.gene21775:CDS |
| TATCCTTGCAAGTGATCCAA+AGG | 0.609170 | 5.2:-1743432 | None:intergenic |
| TGGTGAACTTGATGGAGGGA+AGG | 0.610203 | 5.2:+1742820 | MS.gene21775:CDS |
| AAGGCGTGTTCGAAGAAACA+AGG | 0.613184 | 5.2:+1742839 | MS.gene21775:CDS |
| CAGATGTTAGCGATGCAAGA+AGG | 0.615125 | 5.2:+1743770 | MS.gene21775:CDS |
| AAACACCTAGGGGTGATCCA+TGG | 0.624497 | 5.2:-1744006 | None:intergenic |
| CAGTTACTTTCTTGCCTCAG+GGG | 0.626731 | 5.2:+1743146 | MS.gene21775:intron |
| GCTAACATCTGAGTTTCAGA+TGG | 0.626740 | 5.2:-1743758 | None:intergenic |
| CAGGTTGGTGAACTTGATGG+AGG | 0.633962 | 5.2:+1742815 | MS.gene21775:CDS |
| TAATGCGATTGAAGTGCTCA+TGG | 0.637207 | 5.2:+1743021 | MS.gene21775:CDS |
| ACAAAAGGATGGATCAGTGG+TGG | 0.638622 | 5.2:+1742781 | MS.gene21775:intron |
| AGGTTGGTGAACTTGATGGA+GGG | 0.640702 | 5.2:+1742816 | MS.gene21775:CDS |
| GCGATTGAAGTGCTCATGGT+TGG | 0.646711 | 5.2:+1743025 | MS.gene21775:CDS |
| AGTGGTGGAGAGTAGAACAC+AGG | 0.692386 | 5.2:+1742796 | MS.gene21775:CDS |
| TGAACAAAAGGATGGATCAG+TGG | 0.692488 | 5.2:+1742778 | MS.gene21775:intron |
| GTGGAGAGTAGAACACAGGT+TGG | 0.695448 | 5.2:+1742800 | MS.gene21775:CDS |
| AGGCGTGTTCGAAGAAACAA+GGG | 0.708111 | 5.2:+1742840 | MS.gene21775:CDS |
| CGTGTTCGAAGAAACAAGGG+AGG | 0.726425 | 5.2:+1742843 | MS.gene21775:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATGTATTTAAATTTCTACA+TGG | + | chr5.2:1743280-1743299 | MS.gene21775:intron | 15.0% |
| !! | AGATTATCCATGAATTTAAA+AGG | + | chr5.2:1743681-1743700 | MS.gene21775:intron | 20.0% |
| !! | ATTGGATATAATATTTGTCA+TGG | + | chr5.2:1742635-1742654 | MS.gene21775:intron | 20.0% |
| !! | TGATTTAATGTCTATTGTAT+AGG | + | chr5.2:1743724-1743743 | MS.gene21775:intron | 20.0% |
| !!! | AACATTTCCTTTTAAATTCA+TGG | - | chr5.2:1743691-1743710 | None:intergenic | 20.0% |
| !!! | TTACTTTTTGTGACAAAAAT+AGG | + | chr5.2:1743593-1743612 | MS.gene21775:intron | 20.0% |
| ! | AGTTCATTTAAATGAAATGC+AGG | - | chr5.2:1743828-1743847 | None:intergenic | 25.0% |
| ! | GTACAGAAATTTGAATTCAT+TGG | + | chr5.2:1742717-1742736 | MS.gene21775:intron | 25.0% |
| ! | GTCTTATAAGCTAACTTTAT+TGG | + | chr5.2:1743218-1743237 | MS.gene21775:intron | 25.0% |
| ! | TATGTAATATTTAAGCCATG+AGG | - | chr5.2:1743479-1743498 | None:intergenic | 25.0% |
| !! | TTTTCTTTTTGTAAGTTGCA+TGG | - | chr5.2:1742743-1742762 | None:intergenic | 25.0% |
| !!! | GATATGTTTTTGAGTGTAAA+AGG | + | chr5.2:1743850-1743869 | MS.gene21775:intron | 25.0% |
| !!! | TTTGTGATTTTGATTGCAAA+AGG | + | chr5.2:1743123-1743142 | MS.gene21775:intron | 25.0% |
| AAAATAGGTTGTGAAACATG+AGG | + | chr5.2:1743608-1743627 | MS.gene21775:intron | 30.0% | |
| AAATAGGTTGTGAAACATGA+GGG | + | chr5.2:1743609-1743628 | MS.gene21775:intron | 30.0% | |
| AAGCATATTTATGTACCTCA+TGG | + | chr5.2:1743461-1743480 | MS.gene21775:intron | 30.0% | |
| AATGTCTATTGTATAGGCTT+TGG | + | chr5.2:1743730-1743749 | MS.gene21775:intron | 30.0% | |
| ATGAATTGTTGAAGCAGATT+AGG | + | chr5.2:1742945-1742964 | MS.gene21775:CDS | 30.0% | |
| CATTTAAATGAAATGCAGGA+AGG | - | chr5.2:1743824-1743843 | None:intergenic | 30.0% | |
| TGCATTTCTTCATTGTGTAT+TGG | + | chr5.2:1742617-1742636 | MS.gene21775:intron | 30.0% | |
| ! | AATCAGCACTAAACATCTTT+TGG | - | chr5.2:1743084-1743103 | None:intergenic | 30.0% |
| !! | CAGTTACTTTCATTTTGACA+GGG | + | chr5.2:1743325-1743344 | MS.gene21775:intron | 30.0% |
| !! | TCAGTTACTTTCATTTTGAC+AGG | + | chr5.2:1743324-1743343 | MS.gene21775:intron | 30.0% |
| !!! | CGTAAAATGTTTTTTGCTAC+AGG | + | chr5.2:1742672-1742691 | MS.gene21775:intron | 30.0% |
| ACCTTTCATCATCATAGAGA+TGG | - | chr5.2:1743188-1743207 | None:intergenic | 35.0% | |
| AGTGTAAAAGGTTGTCACAA+AGG | + | chr5.2:1743862-1743881 | MS.gene21775:intron | 35.0% | |
| GATCATGTTACAGAAACGAA+CGG | - | chr5.2:1743660-1743679 | None:intergenic | 35.0% | |
| GTGTAAAAGGTTGTCACAAA+GGG | + | chr5.2:1743863-1743882 | MS.gene21775:intron | 35.0% | |
| TGCTGATAATCTGTGTTTCA+AGG | + | chr5.2:1743365-1743384 | MS.gene21775:CDS | 35.0% | |
| ! | TCCATCTCTATGATGATGAA+AGG | + | chr5.2:1743184-1743203 | MS.gene21775:intron | 35.0% |
| ! | TTTTTGCTACAGGTTCTACA+TGG | + | chr5.2:1742682-1742701 | MS.gene21775:intron | 35.0% |
| !! | TAGTTAGCGTTGATAATCGT+AGG | + | chr5.2:1743565-1743584 | MS.gene21775:intron | 35.0% |
| !!! | AGTGCTGATTTTGATTGTGT+AGG | + | chr5.2:1743094-1743113 | MS.gene21775:intron | 35.0% |
| AGAAGGATGTTGTGGATTTG+AGG | + | chr5.2:1742867-1742886 | MS.gene21775:CDS | 40.0% | |
| ATACCTTTGGATCACTTGCA+AGG | + | chr5.2:1743429-1743448 | MS.gene21775:CDS | 40.0% | |
| CTGCTACACTTACATACCTT+TGG | + | chr5.2:1743416-1743435 | MS.gene21775:CDS | 40.0% | |
| CTGTGTCTGCTAATGACAAT+AGG | + | chr5.2:1742915-1742934 | MS.gene21775:CDS | 40.0% | |
| GCTAACATCTGAGTTTCAGA+TGG | - | chr5.2:1743761-1743780 | None:intergenic | 40.0% | |
| GCTGTTAACTCTTCAGTTGA+AGG | - | chr5.2:1743889-1743908 | None:intergenic | 40.0% | |
| TATCCTTGCAAGTGATCCAA+AGG | - | chr5.2:1743435-1743454 | None:intergenic | 40.0% | |
| TGAACAAAAGGATGGATCAG+TGG | + | chr5.2:1742778-1742797 | MS.gene21775:intron | 40.0% | |
| TTGGATCACTTGCAAGGATA+TGG | + | chr5.2:1743435-1743454 | MS.gene21775:CDS | 40.0% | |
| TTGTGCACACAGAACCAAAA+GGG | - | chr5.2:1742894-1742913 | None:intergenic | 40.0% | |
| TTGTGTGCTGAACAAAAGGA+TGG | + | chr5.2:1742770-1742789 | MS.gene21775:intron | 40.0% | |
| ! | AGTAGTCAGAGGTTTTCTGT+TGG | + | chr5.2:1743930-1743949 | MS.gene21775:CDS | 40.0% |
| ! | GTAGTCAGAGGTTTTCTGTT+GGG | + | chr5.2:1743931-1743950 | MS.gene21775:CDS | 40.0% |
| ! | GTCTATTGTATAGGCTTTGG+AGG | + | chr5.2:1743733-1743752 | MS.gene21775:intron | 40.0% |
| ! | TAATGCGATTGAAGTGCTCA+TGG | + | chr5.2:1743021-1743040 | MS.gene21775:CDS | 40.0% |
| AAGGCGTGTTCGAAGAAACA+AGG | + | chr5.2:1742839-1742858 | MS.gene21775:CDS | 45.0% | |
| ACAAAAGGATGGATCAGTGG+TGG | + | chr5.2:1742781-1742800 | MS.gene21775:intron | 45.0% | |
| AGGCGTGTTCGAAGAAACAA+GGG | + | chr5.2:1742840-1742859 | MS.gene21775:CDS | 45.0% | |
| AGGTGATGCATCACAGAGAA+CGG | + | chr5.2:1742985-1743004 | MS.gene21775:CDS | 45.0% | |
| CAGATGTTAGCGATGCAAGA+AGG | + | chr5.2:1743770-1743789 | MS.gene21775:CDS | 45.0% | |
| CTTGTGCACACAGAACCAAA+AGG | - | chr5.2:1742895-1742914 | None:intergenic | 45.0% | |
| GAAGAAACAAGGGAGGAAGA+AGG | + | chr5.2:1742850-1742869 | MS.gene21775:CDS | 45.0% | |
| GAAGGAGAGATACTTACACC+AGG | - | chr5.2:1743806-1743825 | None:intergenic | 45.0% | |
| GAGATGCTTCTTTCTGTCCA+TGG | + | chr5.2:1743989-1744008 | MS.gene21775:CDS | 45.0% | |
| GATGACACCCAAAACACTTC+GGG | + | chr5.2:1743953-1743972 | MS.gene21775:CDS | 45.0% | |
| GGATGACACCCAAAACACTT+CGG | + | chr5.2:1743952-1743971 | MS.gene21775:CDS | 45.0% | |
| GTCGTTGTGTGCTGAACAAA+AGG | + | chr5.2:1742766-1742785 | MS.gene21775:intron | 45.0% | |
| ! | ACAGGGAGAACAAGCTTTGT+TGG | + | chr5.2:1743342-1743361 | MS.gene21775:intron | 45.0% |
| ! | ACTTTATTGGCTGCAAGCTC+AGG | + | chr5.2:1743231-1743250 | MS.gene21775:intron | 45.0% |
| ! | AGTTACTTTCTTGCCTCAGG+GGG | + | chr5.2:1743147-1743166 | MS.gene21775:intron | 45.0% |
| ! | CAGCTGAATATGCGTTTTGC+AGG | + | chr5.2:1743905-1743924 | MS.gene21775:intron | 45.0% |
| ! | CAGTTACTTTCTTGCCTCAG+GGG | + | chr5.2:1743146-1743165 | MS.gene21775:intron | 45.0% |
| ! | CTTTATTGGCTGCAAGCTCA+GGG | + | chr5.2:1743232-1743251 | MS.gene21775:intron | 45.0% |
| ! | GCAGTTACTTTCTTGCCTCA+GGG | + | chr5.2:1743145-1743164 | MS.gene21775:intron | 45.0% |
| ! | TGTGGATTTGAGGACCCTTT+TGG | + | chr5.2:1742877-1742896 | MS.gene21775:CDS | 45.0% |
| ! | TTTTGCAGGTGAGTAGTCAG+AGG | + | chr5.2:1743919-1743938 | MS.gene21775:intron | 45.0% |
| !! | ACACAGGTTGGTGAACTTGA+TGG | + | chr5.2:1742812-1742831 | MS.gene21775:CDS | 45.0% |
| !! | ACAGAAAGAAGCATCTCTCC+AGG | - | chr5.2:1743986-1744005 | None:intergenic | 45.0% |
| !! | AGGAAGCATTCTTGTCCTTC+AGG | + | chr5.2:1742965-1742984 | MS.gene21775:CDS | 45.0% |
| !! | AGGTTGGTGAACTTGATGGA+GGG | + | chr5.2:1742816-1742835 | MS.gene21775:CDS | 45.0% |
| !! | CTTGGAACCCGAAGTGTTTT+GGG | - | chr5.2:1743963-1743982 | None:intergenic | 45.0% |
| AGGGAGGAAGAAGGATGTTG+TGG | + | chr5.2:1742859-1742878 | MS.gene21775:CDS | 50.0% | |
| CAAGAAGGTCTTCTGACTCC+TGG | + | chr5.2:1743785-1743804 | MS.gene21775:CDS | 50.0% | |
| CAGGTTCTACATGGTGCATC+TGG | + | chr5.2:1742691-1742710 | MS.gene21775:intron | 50.0% | |
| CGTGTTCGAAGAAACAAGGG+AGG | + | chr5.2:1742843-1742862 | MS.gene21775:CDS | 50.0% | |
| CTCTGTGATGCATCACCTGA+AGG | - | chr5.2:1742983-1743002 | None:intergenic | 50.0% | |
| GTGGAGAGTAGAACACAGGT+TGG | + | chr5.2:1742800-1742819 | MS.gene21775:CDS | 50.0% | |
| TGGTGAACTTGATGGAGGGA+AGG | + | chr5.2:1742820-1742839 | MS.gene21775:CDS | 50.0% | |
| ! | AGTGGTGGAGAGTAGAACAC+AGG | + | chr5.2:1742796-1742815 | MS.gene21775:CDS | 50.0% |
| ! | GCGATTGAAGTGCTCATGGT+TGG | + | chr5.2:1743025-1743044 | MS.gene21775:CDS | 50.0% |
| ! | GGCAGTTACTTTCTTGCCTC+AGG | + | chr5.2:1743144-1743163 | MS.gene21775:intron | 50.0% |
| !! | AAGAAGCATCTCTCCAGGCT+TGG | - | chr5.2:1743981-1744000 | None:intergenic | 50.0% |
| !! | CAGGTTGGTGAACTTGATGG+AGG | + | chr5.2:1742815-1742834 | MS.gene21775:CDS | 50.0% |
| !! | CTCATGGTTGGTGCTGGTAA+CGG | + | chr5.2:1743037-1743056 | MS.gene21775:CDS | 50.0% |
| !! | GCTTGGAACCCGAAGTGTTT+TGG | - | chr5.2:1743964-1743983 | None:intergenic | 50.0% |
| CATACAATCTCGTCCCCCTG+AGG | - | chr5.2:1743163-1743182 | None:intergenic | 55.0% | |
| ! | AACACTTCGGGTTCCAAGCC+TGG | + | chr5.2:1743965-1743984 | MS.gene21775:CDS | 55.0% |
| ! | GAAGTGCTCATGGTTGGTGC+TGG | + | chr5.2:1743031-1743050 | MS.gene21775:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 1742603 | 1744022 | 1742603 | ID=MS.gene21775 |
| chr5.2 | mRNA | 1742603 | 1744022 | 1742603 | ID=MS.gene21775.t1;Parent=MS.gene21775 |
| chr5.2 | exon | 1742603 | 1742610 | 1742603 | ID=MS.gene21775.t1.exon1;Parent=MS.gene21775.t1 |
| chr5.2 | CDS | 1742603 | 1742610 | 1742603 | ID=cds.MS.gene21775.t1;Parent=MS.gene21775.t1 |
| chr5.2 | exon | 1742694 | 1742712 | 1742694 | ID=MS.gene21775.t1.exon2;Parent=MS.gene21775.t1 |
| chr5.2 | CDS | 1742694 | 1742712 | 1742694 | ID=cds.MS.gene21775.t1;Parent=MS.gene21775.t1 |
| chr5.2 | exon | 1742788 | 1743058 | 1742788 | ID=MS.gene21775.t1.exon3;Parent=MS.gene21775.t1 |
| chr5.2 | CDS | 1742788 | 1743058 | 1742788 | ID=cds.MS.gene21775.t1;Parent=MS.gene21775.t1 |
| chr5.2 | exon | 1743149 | 1743177 | 1743149 | ID=MS.gene21775.t1.exon4;Parent=MS.gene21775.t1 |
| chr5.2 | CDS | 1743149 | 1743177 | 1743149 | ID=cds.MS.gene21775.t1;Parent=MS.gene21775.t1 |
| chr5.2 | exon | 1743346 | 1743456 | 1743346 | ID=MS.gene21775.t1.exon5;Parent=MS.gene21775.t1 |
| chr5.2 | CDS | 1743346 | 1743456 | 1743346 | ID=cds.MS.gene21775.t1;Parent=MS.gene21775.t1 |
| chr5.2 | exon | 1743746 | 1743808 | 1743746 | ID=MS.gene21775.t1.exon6;Parent=MS.gene21775.t1 |
| chr5.2 | CDS | 1743746 | 1743808 | 1743746 | ID=cds.MS.gene21775.t1;Parent=MS.gene21775.t1 |
| chr5.2 | exon | 1743927 | 1744022 | 1743927 | ID=MS.gene21775.t1.exon7;Parent=MS.gene21775.t1 |
| chr5.2 | CDS | 1743927 | 1744022 | 1743927 | ID=cds.MS.gene21775.t1;Parent=MS.gene21775.t1 |
| Gene Sequence |
| Protein sequence |