Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21775.t1 | RHN76102.1 | 85.9 | 92 | 13 | 0 | 10 | 101 | 264 | 355 | 4.10E-34 | 154.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21775.t1 | Q9XE58 | 51.1 | 88 | 41 | 1 | 13 | 98 | 362 | 449 | 1.7e-17 | 90.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21775.t1 | G7IRV1 | 85.9 | 92 | 13 | 0 | 10 | 101 | 336 | 427 | 2.9e-34 | 154.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene21775.t1 | TF | GRAS |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21775.t1 | MTR_2g097410 | 85.870 | 92 | 13 | 0 | 10 | 101 | 336 | 427 | 3.45e-46 | 162 |
MS.gene21775.t1 | MTR_4g064150 | 61.333 | 75 | 29 | 0 | 24 | 98 | 340 | 414 | 6.56e-27 | 107 |
MS.gene21775.t1 | MTR_3g087300 | 89.091 | 55 | 6 | 0 | 10 | 64 | 154 | 208 | 8.38e-27 | 101 |
MS.gene21775.t1 | MTR_4g064160 | 57.647 | 85 | 36 | 0 | 14 | 98 | 285 | 369 | 5.14e-25 | 102 |
MS.gene21775.t1 | MTR_4g064120 | 59.494 | 79 | 30 | 1 | 26 | 102 | 235 | 313 | 3.09e-24 | 99.8 |
MS.gene21775.t1 | MTR_7g062120 | 57.895 | 76 | 32 | 0 | 27 | 102 | 354 | 429 | 5.46e-23 | 96.3 |
MS.gene21775.t1 | MTR_4g064180 | 58.571 | 70 | 29 | 0 | 26 | 95 | 235 | 304 | 4.89e-22 | 93.2 |
MS.gene21775.t1 | MTR_2g097390 | 50.602 | 83 | 41 | 0 | 16 | 98 | 246 | 328 | 1.22e-20 | 89.4 |
MS.gene21775.t1 | MTR_2g097350 | 53.623 | 69 | 32 | 0 | 31 | 99 | 260 | 328 | 2.89e-20 | 88.2 |
MS.gene21775.t1 | MTR_2g097310 | 50.725 | 69 | 34 | 0 | 31 | 99 | 258 | 326 | 7.82e-19 | 84.0 |
MS.gene21775.t1 | MTR_2g097463 | 39.370 | 127 | 63 | 3 | 23 | 136 | 260 | 385 | 6.29e-18 | 81.6 |
MS.gene21775.t1 | MTR_2g097467 | 55.882 | 68 | 28 | 1 | 31 | 96 | 273 | 340 | 5.17e-16 | 75.9 |
MS.gene21775.t1 | MTR_2g097473 | 41.379 | 116 | 55 | 3 | 25 | 128 | 262 | 376 | 1.29e-15 | 74.7 |
MS.gene21775.t1 | MTR_4g064200 | 58.929 | 56 | 23 | 0 | 39 | 94 | 278 | 333 | 4.68e-15 | 73.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21775.t1 | AT1G07530 | 51.136 | 88 | 41 | 1 | 13 | 98 | 362 | 449 | 2.44e-22 | 94.4 |
MS.gene21775.t1 | AT1G07520 | 39.073 | 151 | 87 | 2 | 9 | 157 | 116 | 263 | 8.17e-22 | 92.8 |
MS.gene21775.t1 | AT1G07520 | 39.073 | 151 | 87 | 2 | 9 | 157 | 116 | 263 | 8.17e-22 | 92.8 |
MS.gene21775.t1 | AT1G07520 | 39.073 | 151 | 87 | 2 | 9 | 157 | 280 | 427 | 8.38e-22 | 92.8 |
MS.gene21775.t1 | AT1G07520 | 39.073 | 151 | 87 | 2 | 9 | 157 | 281 | 428 | 8.46e-22 | 92.8 |
MS.gene21775.t1 | AT2G37650 | 55.714 | 70 | 31 | 0 | 33 | 102 | 335 | 404 | 1.59e-18 | 83.2 |
MS.gene21775.t1 | AT2G37650 | 55.714 | 70 | 31 | 0 | 33 | 102 | 323 | 392 | 1.71e-18 | 83.2 |
MS.gene21775.t1 | AT2G29060 | 48.718 | 78 | 40 | 0 | 25 | 102 | 264 | 341 | 4.72e-18 | 82.0 |
MS.gene21775.t1 | AT2G29060 | 48.718 | 78 | 40 | 0 | 25 | 102 | 301 | 378 | 5.21e-18 | 81.6 |
MS.gene21775.t1 | AT2G29065 | 57.627 | 59 | 25 | 0 | 39 | 97 | 246 | 304 | 1.65e-13 | 68.6 |
MS.gene21775.t1 | AT5G59450 | 46.377 | 69 | 37 | 0 | 28 | 96 | 210 | 278 | 2.22e-13 | 68.2 |
MS.gene21775.t1 | AT3G46600 | 45.070 | 71 | 39 | 0 | 26 | 96 | 161 | 231 | 1.28e-12 | 66.2 |
MS.gene21775.t1 | AT3G46600 | 45.070 | 71 | 39 | 0 | 26 | 96 | 193 | 263 | 1.47e-12 | 65.9 |
Find 51 sgRNAs with CRISPR-Local
Find 91 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCTTGGAACCCGAAGTGTTT+TGG | 0.241649 | 5.2:-1743961 | None:intergenic |
TTGGATCACTTGCAAGGATA+TGG | 0.297228 | 5.2:+1743435 | MS.gene21775:CDS |
AGGAAGCATTCTTGTCCTTC+AGG | 0.304700 | 5.2:+1742965 | MS.gene21775:CDS |
CTGCTACACTTACATACCTT+TGG | 0.328180 | 5.2:+1743416 | MS.gene21775:CDS |
GGCAGTTACTTTCTTGCCTC+AGG | 0.350572 | 5.2:+1743144 | MS.gene21775:intron |
ATGAATTGTTGAAGCAGATT+AGG | 0.368680 | 5.2:+1742945 | MS.gene21775:CDS |
TGTGGATTTGAGGACCCTTT+TGG | 0.385294 | 5.2:+1742877 | MS.gene21775:CDS |
CAGGTTCTACATGGTGCATC+TGG | 0.398474 | 5.2:+1742691 | MS.gene21775:intron |
ACAGGGAGAACAAGCTTTGT+TGG | 0.399351 | 5.2:+1743342 | MS.gene21775:intron |
AACACTTCGGGTTCCAAGCC+TGG | 0.402067 | 5.2:+1743965 | MS.gene21775:CDS |
CTGTGTCTGCTAATGACAAT+AGG | 0.426533 | 5.2:+1742915 | MS.gene21775:CDS |
GAGATGCTTCTTTCTGTCCA+TGG | 0.428796 | 5.2:+1743989 | MS.gene21775:CDS |
GTCTATTGTATAGGCTTTGG+AGG | 0.440001 | 5.2:+1743733 | MS.gene21775:intron |
GATGACACCCAAAACACTTC+GGG | 0.448978 | 5.2:+1743953 | MS.gene21775:CDS |
AGAAGGATGTTGTGGATTTG+AGG | 0.449422 | 5.2:+1742867 | MS.gene21775:CDS |
TGCTGATAATCTGTGTTTCA+AGG | 0.456022 | 5.2:+1743365 | MS.gene21775:CDS |
ACACAGGTTGGTGAACTTGA+TGG | 0.468419 | 5.2:+1742812 | MS.gene21775:CDS |
CAAGAAGGTCTTCTGACTCC+TGG | 0.484397 | 5.2:+1743785 | MS.gene21775:CDS |
AAGAAGCATCTCTCCAGGCT+TGG | 0.487378 | 5.2:-1743978 | None:intergenic |
TCTGTCCATGGATCACCCCT+AGG | 0.525999 | 5.2:+1744001 | MS.gene21775:CDS |
GGATGACACCCAAAACACTT+CGG | 0.531639 | 5.2:+1743952 | MS.gene21775:CDS |
ATACCTTTGGATCACTTGCA+AGG | 0.533675 | 5.2:+1743429 | MS.gene21775:CDS |
CTCTGTGATGCATCACCTGA+AGG | 0.537655 | 5.2:-1742980 | None:intergenic |
GCAGTTACTTTCTTGCCTCA+GGG | 0.540939 | 5.2:+1743145 | MS.gene21775:intron |
AGGGAGGAAGAAGGATGTTG+TGG | 0.542775 | 5.2:+1742859 | MS.gene21775:CDS |
GAAGTGCTCATGGTTGGTGC+TGG | 0.542798 | 5.2:+1743031 | MS.gene21775:CDS |
CTTGTGCACACAGAACCAAA+AGG | 0.550869 | 5.2:-1742892 | None:intergenic |
ACAGAAAGAAGCATCTCTCC+AGG | 0.551277 | 5.2:-1743983 | None:intergenic |
CTCATGGTTGGTGCTGGTAA+CGG | 0.557297 | 5.2:+1743037 | MS.gene21775:CDS |
TGCAAAGATTGAAAATGTTG+AGG | 0.562117 | 5.2:+1742589 | None:intergenic |
TTGTGCACACAGAACCAAAA+GGG | 0.577974 | 5.2:-1742891 | None:intergenic |
GAAGAAACAAGGGAGGAAGA+AGG | 0.580210 | 5.2:+1742850 | MS.gene21775:CDS |
AGTTACTTTCTTGCCTCAGG+GGG | 0.601989 | 5.2:+1743147 | MS.gene21775:intron |
AGGTGATGCATCACAGAGAA+CGG | 0.608660 | 5.2:+1742985 | MS.gene21775:CDS |
TATCCTTGCAAGTGATCCAA+AGG | 0.609170 | 5.2:-1743432 | None:intergenic |
TGGTGAACTTGATGGAGGGA+AGG | 0.610203 | 5.2:+1742820 | MS.gene21775:CDS |
AAGGCGTGTTCGAAGAAACA+AGG | 0.613184 | 5.2:+1742839 | MS.gene21775:CDS |
CAGATGTTAGCGATGCAAGA+AGG | 0.615125 | 5.2:+1743770 | MS.gene21775:CDS |
AAACACCTAGGGGTGATCCA+TGG | 0.624497 | 5.2:-1744006 | None:intergenic |
CAGTTACTTTCTTGCCTCAG+GGG | 0.626731 | 5.2:+1743146 | MS.gene21775:intron |
GCTAACATCTGAGTTTCAGA+TGG | 0.626740 | 5.2:-1743758 | None:intergenic |
CAGGTTGGTGAACTTGATGG+AGG | 0.633962 | 5.2:+1742815 | MS.gene21775:CDS |
TAATGCGATTGAAGTGCTCA+TGG | 0.637207 | 5.2:+1743021 | MS.gene21775:CDS |
ACAAAAGGATGGATCAGTGG+TGG | 0.638622 | 5.2:+1742781 | MS.gene21775:intron |
AGGTTGGTGAACTTGATGGA+GGG | 0.640702 | 5.2:+1742816 | MS.gene21775:CDS |
GCGATTGAAGTGCTCATGGT+TGG | 0.646711 | 5.2:+1743025 | MS.gene21775:CDS |
AGTGGTGGAGAGTAGAACAC+AGG | 0.692386 | 5.2:+1742796 | MS.gene21775:CDS |
TGAACAAAAGGATGGATCAG+TGG | 0.692488 | 5.2:+1742778 | MS.gene21775:intron |
GTGGAGAGTAGAACACAGGT+TGG | 0.695448 | 5.2:+1742800 | MS.gene21775:CDS |
AGGCGTGTTCGAAGAAACAA+GGG | 0.708111 | 5.2:+1742840 | MS.gene21775:CDS |
CGTGTTCGAAGAAACAAGGG+AGG | 0.726425 | 5.2:+1742843 | MS.gene21775:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATGTATTTAAATTTCTACA+TGG | + | chr5.2:1743280-1743299 | MS.gene21775:intron | 15.0% |
!! | AGATTATCCATGAATTTAAA+AGG | + | chr5.2:1743681-1743700 | MS.gene21775:intron | 20.0% |
!! | ATTGGATATAATATTTGTCA+TGG | + | chr5.2:1742635-1742654 | MS.gene21775:intron | 20.0% |
!! | TGATTTAATGTCTATTGTAT+AGG | + | chr5.2:1743724-1743743 | MS.gene21775:intron | 20.0% |
!!! | AACATTTCCTTTTAAATTCA+TGG | - | chr5.2:1743691-1743710 | None:intergenic | 20.0% |
!!! | TTACTTTTTGTGACAAAAAT+AGG | + | chr5.2:1743593-1743612 | MS.gene21775:intron | 20.0% |
! | AGTTCATTTAAATGAAATGC+AGG | - | chr5.2:1743828-1743847 | None:intergenic | 25.0% |
! | GTACAGAAATTTGAATTCAT+TGG | + | chr5.2:1742717-1742736 | MS.gene21775:intron | 25.0% |
! | GTCTTATAAGCTAACTTTAT+TGG | + | chr5.2:1743218-1743237 | MS.gene21775:intron | 25.0% |
! | TATGTAATATTTAAGCCATG+AGG | - | chr5.2:1743479-1743498 | None:intergenic | 25.0% |
!! | TTTTCTTTTTGTAAGTTGCA+TGG | - | chr5.2:1742743-1742762 | None:intergenic | 25.0% |
!!! | GATATGTTTTTGAGTGTAAA+AGG | + | chr5.2:1743850-1743869 | MS.gene21775:intron | 25.0% |
!!! | TTTGTGATTTTGATTGCAAA+AGG | + | chr5.2:1743123-1743142 | MS.gene21775:intron | 25.0% |
AAAATAGGTTGTGAAACATG+AGG | + | chr5.2:1743608-1743627 | MS.gene21775:intron | 30.0% | |
AAATAGGTTGTGAAACATGA+GGG | + | chr5.2:1743609-1743628 | MS.gene21775:intron | 30.0% | |
AAGCATATTTATGTACCTCA+TGG | + | chr5.2:1743461-1743480 | MS.gene21775:intron | 30.0% | |
AATGTCTATTGTATAGGCTT+TGG | + | chr5.2:1743730-1743749 | MS.gene21775:intron | 30.0% | |
ATGAATTGTTGAAGCAGATT+AGG | + | chr5.2:1742945-1742964 | MS.gene21775:CDS | 30.0% | |
CATTTAAATGAAATGCAGGA+AGG | - | chr5.2:1743824-1743843 | None:intergenic | 30.0% | |
TGCATTTCTTCATTGTGTAT+TGG | + | chr5.2:1742617-1742636 | MS.gene21775:intron | 30.0% | |
! | AATCAGCACTAAACATCTTT+TGG | - | chr5.2:1743084-1743103 | None:intergenic | 30.0% |
!! | CAGTTACTTTCATTTTGACA+GGG | + | chr5.2:1743325-1743344 | MS.gene21775:intron | 30.0% |
!! | TCAGTTACTTTCATTTTGAC+AGG | + | chr5.2:1743324-1743343 | MS.gene21775:intron | 30.0% |
!!! | CGTAAAATGTTTTTTGCTAC+AGG | + | chr5.2:1742672-1742691 | MS.gene21775:intron | 30.0% |
ACCTTTCATCATCATAGAGA+TGG | - | chr5.2:1743188-1743207 | None:intergenic | 35.0% | |
AGTGTAAAAGGTTGTCACAA+AGG | + | chr5.2:1743862-1743881 | MS.gene21775:intron | 35.0% | |
GATCATGTTACAGAAACGAA+CGG | - | chr5.2:1743660-1743679 | None:intergenic | 35.0% | |
GTGTAAAAGGTTGTCACAAA+GGG | + | chr5.2:1743863-1743882 | MS.gene21775:intron | 35.0% | |
TGCTGATAATCTGTGTTTCA+AGG | + | chr5.2:1743365-1743384 | MS.gene21775:CDS | 35.0% | |
! | TCCATCTCTATGATGATGAA+AGG | + | chr5.2:1743184-1743203 | MS.gene21775:intron | 35.0% |
! | TTTTTGCTACAGGTTCTACA+TGG | + | chr5.2:1742682-1742701 | MS.gene21775:intron | 35.0% |
!! | TAGTTAGCGTTGATAATCGT+AGG | + | chr5.2:1743565-1743584 | MS.gene21775:intron | 35.0% |
!!! | AGTGCTGATTTTGATTGTGT+AGG | + | chr5.2:1743094-1743113 | MS.gene21775:intron | 35.0% |
AGAAGGATGTTGTGGATTTG+AGG | + | chr5.2:1742867-1742886 | MS.gene21775:CDS | 40.0% | |
ATACCTTTGGATCACTTGCA+AGG | + | chr5.2:1743429-1743448 | MS.gene21775:CDS | 40.0% | |
CTGCTACACTTACATACCTT+TGG | + | chr5.2:1743416-1743435 | MS.gene21775:CDS | 40.0% | |
CTGTGTCTGCTAATGACAAT+AGG | + | chr5.2:1742915-1742934 | MS.gene21775:CDS | 40.0% | |
GCTAACATCTGAGTTTCAGA+TGG | - | chr5.2:1743761-1743780 | None:intergenic | 40.0% | |
GCTGTTAACTCTTCAGTTGA+AGG | - | chr5.2:1743889-1743908 | None:intergenic | 40.0% | |
TATCCTTGCAAGTGATCCAA+AGG | - | chr5.2:1743435-1743454 | None:intergenic | 40.0% | |
TGAACAAAAGGATGGATCAG+TGG | + | chr5.2:1742778-1742797 | MS.gene21775:intron | 40.0% | |
TTGGATCACTTGCAAGGATA+TGG | + | chr5.2:1743435-1743454 | MS.gene21775:CDS | 40.0% | |
TTGTGCACACAGAACCAAAA+GGG | - | chr5.2:1742894-1742913 | None:intergenic | 40.0% | |
TTGTGTGCTGAACAAAAGGA+TGG | + | chr5.2:1742770-1742789 | MS.gene21775:intron | 40.0% | |
! | AGTAGTCAGAGGTTTTCTGT+TGG | + | chr5.2:1743930-1743949 | MS.gene21775:CDS | 40.0% |
! | GTAGTCAGAGGTTTTCTGTT+GGG | + | chr5.2:1743931-1743950 | MS.gene21775:CDS | 40.0% |
! | GTCTATTGTATAGGCTTTGG+AGG | + | chr5.2:1743733-1743752 | MS.gene21775:intron | 40.0% |
! | TAATGCGATTGAAGTGCTCA+TGG | + | chr5.2:1743021-1743040 | MS.gene21775:CDS | 40.0% |
AAGGCGTGTTCGAAGAAACA+AGG | + | chr5.2:1742839-1742858 | MS.gene21775:CDS | 45.0% | |
ACAAAAGGATGGATCAGTGG+TGG | + | chr5.2:1742781-1742800 | MS.gene21775:intron | 45.0% | |
AGGCGTGTTCGAAGAAACAA+GGG | + | chr5.2:1742840-1742859 | MS.gene21775:CDS | 45.0% | |
AGGTGATGCATCACAGAGAA+CGG | + | chr5.2:1742985-1743004 | MS.gene21775:CDS | 45.0% | |
CAGATGTTAGCGATGCAAGA+AGG | + | chr5.2:1743770-1743789 | MS.gene21775:CDS | 45.0% | |
CTTGTGCACACAGAACCAAA+AGG | - | chr5.2:1742895-1742914 | None:intergenic | 45.0% | |
GAAGAAACAAGGGAGGAAGA+AGG | + | chr5.2:1742850-1742869 | MS.gene21775:CDS | 45.0% | |
GAAGGAGAGATACTTACACC+AGG | - | chr5.2:1743806-1743825 | None:intergenic | 45.0% | |
GAGATGCTTCTTTCTGTCCA+TGG | + | chr5.2:1743989-1744008 | MS.gene21775:CDS | 45.0% | |
GATGACACCCAAAACACTTC+GGG | + | chr5.2:1743953-1743972 | MS.gene21775:CDS | 45.0% | |
GGATGACACCCAAAACACTT+CGG | + | chr5.2:1743952-1743971 | MS.gene21775:CDS | 45.0% | |
GTCGTTGTGTGCTGAACAAA+AGG | + | chr5.2:1742766-1742785 | MS.gene21775:intron | 45.0% | |
! | ACAGGGAGAACAAGCTTTGT+TGG | + | chr5.2:1743342-1743361 | MS.gene21775:intron | 45.0% |
! | ACTTTATTGGCTGCAAGCTC+AGG | + | chr5.2:1743231-1743250 | MS.gene21775:intron | 45.0% |
! | AGTTACTTTCTTGCCTCAGG+GGG | + | chr5.2:1743147-1743166 | MS.gene21775:intron | 45.0% |
! | CAGCTGAATATGCGTTTTGC+AGG | + | chr5.2:1743905-1743924 | MS.gene21775:intron | 45.0% |
! | CAGTTACTTTCTTGCCTCAG+GGG | + | chr5.2:1743146-1743165 | MS.gene21775:intron | 45.0% |
! | CTTTATTGGCTGCAAGCTCA+GGG | + | chr5.2:1743232-1743251 | MS.gene21775:intron | 45.0% |
! | GCAGTTACTTTCTTGCCTCA+GGG | + | chr5.2:1743145-1743164 | MS.gene21775:intron | 45.0% |
! | TGTGGATTTGAGGACCCTTT+TGG | + | chr5.2:1742877-1742896 | MS.gene21775:CDS | 45.0% |
! | TTTTGCAGGTGAGTAGTCAG+AGG | + | chr5.2:1743919-1743938 | MS.gene21775:intron | 45.0% |
!! | ACACAGGTTGGTGAACTTGA+TGG | + | chr5.2:1742812-1742831 | MS.gene21775:CDS | 45.0% |
!! | ACAGAAAGAAGCATCTCTCC+AGG | - | chr5.2:1743986-1744005 | None:intergenic | 45.0% |
!! | AGGAAGCATTCTTGTCCTTC+AGG | + | chr5.2:1742965-1742984 | MS.gene21775:CDS | 45.0% |
!! | AGGTTGGTGAACTTGATGGA+GGG | + | chr5.2:1742816-1742835 | MS.gene21775:CDS | 45.0% |
!! | CTTGGAACCCGAAGTGTTTT+GGG | - | chr5.2:1743963-1743982 | None:intergenic | 45.0% |
AGGGAGGAAGAAGGATGTTG+TGG | + | chr5.2:1742859-1742878 | MS.gene21775:CDS | 50.0% | |
CAAGAAGGTCTTCTGACTCC+TGG | + | chr5.2:1743785-1743804 | MS.gene21775:CDS | 50.0% | |
CAGGTTCTACATGGTGCATC+TGG | + | chr5.2:1742691-1742710 | MS.gene21775:intron | 50.0% | |
CGTGTTCGAAGAAACAAGGG+AGG | + | chr5.2:1742843-1742862 | MS.gene21775:CDS | 50.0% | |
CTCTGTGATGCATCACCTGA+AGG | - | chr5.2:1742983-1743002 | None:intergenic | 50.0% | |
GTGGAGAGTAGAACACAGGT+TGG | + | chr5.2:1742800-1742819 | MS.gene21775:CDS | 50.0% | |
TGGTGAACTTGATGGAGGGA+AGG | + | chr5.2:1742820-1742839 | MS.gene21775:CDS | 50.0% | |
! | AGTGGTGGAGAGTAGAACAC+AGG | + | chr5.2:1742796-1742815 | MS.gene21775:CDS | 50.0% |
! | GCGATTGAAGTGCTCATGGT+TGG | + | chr5.2:1743025-1743044 | MS.gene21775:CDS | 50.0% |
! | GGCAGTTACTTTCTTGCCTC+AGG | + | chr5.2:1743144-1743163 | MS.gene21775:intron | 50.0% |
!! | AAGAAGCATCTCTCCAGGCT+TGG | - | chr5.2:1743981-1744000 | None:intergenic | 50.0% |
!! | CAGGTTGGTGAACTTGATGG+AGG | + | chr5.2:1742815-1742834 | MS.gene21775:CDS | 50.0% |
!! | CTCATGGTTGGTGCTGGTAA+CGG | + | chr5.2:1743037-1743056 | MS.gene21775:CDS | 50.0% |
!! | GCTTGGAACCCGAAGTGTTT+TGG | - | chr5.2:1743964-1743983 | None:intergenic | 50.0% |
CATACAATCTCGTCCCCCTG+AGG | - | chr5.2:1743163-1743182 | None:intergenic | 55.0% | |
! | AACACTTCGGGTTCCAAGCC+TGG | + | chr5.2:1743965-1743984 | MS.gene21775:CDS | 55.0% |
! | GAAGTGCTCATGGTTGGTGC+TGG | + | chr5.2:1743031-1743050 | MS.gene21775:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.2 | gene | 1742603 | 1744022 | 1742603 | ID=MS.gene21775 |
chr5.2 | mRNA | 1742603 | 1744022 | 1742603 | ID=MS.gene21775.t1;Parent=MS.gene21775 |
chr5.2 | exon | 1742603 | 1742610 | 1742603 | ID=MS.gene21775.t1.exon1;Parent=MS.gene21775.t1 |
chr5.2 | CDS | 1742603 | 1742610 | 1742603 | ID=cds.MS.gene21775.t1;Parent=MS.gene21775.t1 |
chr5.2 | exon | 1742694 | 1742712 | 1742694 | ID=MS.gene21775.t1.exon2;Parent=MS.gene21775.t1 |
chr5.2 | CDS | 1742694 | 1742712 | 1742694 | ID=cds.MS.gene21775.t1;Parent=MS.gene21775.t1 |
chr5.2 | exon | 1742788 | 1743058 | 1742788 | ID=MS.gene21775.t1.exon3;Parent=MS.gene21775.t1 |
chr5.2 | CDS | 1742788 | 1743058 | 1742788 | ID=cds.MS.gene21775.t1;Parent=MS.gene21775.t1 |
chr5.2 | exon | 1743149 | 1743177 | 1743149 | ID=MS.gene21775.t1.exon4;Parent=MS.gene21775.t1 |
chr5.2 | CDS | 1743149 | 1743177 | 1743149 | ID=cds.MS.gene21775.t1;Parent=MS.gene21775.t1 |
chr5.2 | exon | 1743346 | 1743456 | 1743346 | ID=MS.gene21775.t1.exon5;Parent=MS.gene21775.t1 |
chr5.2 | CDS | 1743346 | 1743456 | 1743346 | ID=cds.MS.gene21775.t1;Parent=MS.gene21775.t1 |
chr5.2 | exon | 1743746 | 1743808 | 1743746 | ID=MS.gene21775.t1.exon6;Parent=MS.gene21775.t1 |
chr5.2 | CDS | 1743746 | 1743808 | 1743746 | ID=cds.MS.gene21775.t1;Parent=MS.gene21775.t1 |
chr5.2 | exon | 1743927 | 1744022 | 1743927 | ID=MS.gene21775.t1.exon7;Parent=MS.gene21775.t1 |
chr5.2 | CDS | 1743927 | 1744022 | 1743927 | ID=cds.MS.gene21775.t1;Parent=MS.gene21775.t1 |
Gene Sequence |
Protein sequence |