Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21864.t1 | KEH26293.1 | 73.2 | 235 | 59 | 1 | 1 | 231 | 1 | 235 | 5.60E-96 | 360.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21864.t1 | Q9SZL8 | 37.3 | 217 | 130 | 4 | 16 | 228 | 72 | 286 | 2.7e-30 | 134.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21864.t1 | A0A072UB45 | 73.2 | 235 | 59 | 1 | 1 | 231 | 1 | 235 | 4.0e-96 | 360.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene21864.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21864.t1 | MTR_6g051425 | 73.191 | 235 | 59 | 1 | 1 | 231 | 1 | 235 | 5.36e-128 | 368 |
| MS.gene21864.t1 | MTR_2g039370 | 89.189 | 74 | 8 | 0 | 49 | 122 | 98 | 171 | 3.37e-39 | 139 |
| MS.gene21864.t1 | MTR_3g465760 | 71.014 | 69 | 16 | 1 | 41 | 105 | 2 | 70 | 1.66e-28 | 104 |
| MS.gene21864.t1 | MTR_1g083640 | 27.778 | 234 | 150 | 4 | 15 | 229 | 49 | 282 | 3.46e-23 | 96.7 |
| MS.gene21864.t1 | MTR_0558s0020 | 27.778 | 234 | 150 | 4 | 15 | 229 | 34 | 267 | 1.78e-22 | 95.1 |
| MS.gene21864.t1 | MTR_1g013060 | 27.536 | 207 | 140 | 4 | 19 | 218 | 26 | 229 | 7.14e-21 | 89.4 |
| MS.gene21864.t1 | MTR_1g070355 | 27.751 | 209 | 143 | 5 | 27 | 231 | 84 | 288 | 1.57e-19 | 89.0 |
| MS.gene21864.t1 | MTR_7g446520 | 29.952 | 207 | 129 | 4 | 27 | 233 | 98 | 288 | 5.30e-18 | 83.2 |
| MS.gene21864.t1 | MTR_8g446020 | 28.495 | 186 | 121 | 2 | 56 | 229 | 42 | 227 | 1.43e-17 | 80.9 |
| MS.gene21864.t1 | MTR_4g035820 | 27.197 | 239 | 153 | 8 | 6 | 230 | 61 | 292 | 3.14e-17 | 82.4 |
| MS.gene21864.t1 | MTR_2g014100 | 27.876 | 226 | 133 | 6 | 5 | 200 | 25 | 250 | 2.89e-16 | 77.0 |
| MS.gene21864.t1 | MTR_5g076070 | 25.229 | 218 | 151 | 5 | 20 | 231 | 56 | 267 | 4.00e-15 | 74.3 |
| MS.gene21864.t1 | MTR_5g039760 | 27.273 | 198 | 110 | 6 | 19 | 211 | 12 | 180 | 3.56e-14 | 70.1 |
| MS.gene21864.t1 | MTR_6g090505 | 26.923 | 182 | 117 | 4 | 64 | 229 | 21 | 202 | 5.27e-14 | 72.0 |
| MS.gene21864.t1 | MTR_0402s0040 | 27.485 | 171 | 108 | 6 | 29 | 191 | 38 | 200 | 1.08e-13 | 71.6 |
| MS.gene21864.t1 | MTR_2g098880 | 31.405 | 121 | 73 | 3 | 7 | 121 | 51 | 167 | 1.53e-13 | 69.3 |
| MS.gene21864.t1 | MTR_2g098880 | 31.405 | 121 | 73 | 3 | 7 | 121 | 63 | 179 | 1.78e-13 | 69.3 |
| MS.gene21864.t1 | MTR_0337s0040 | 27.778 | 144 | 103 | 1 | 83 | 225 | 81 | 224 | 3.40e-13 | 68.2 |
| MS.gene21864.t1 | MTR_7g446480 | 26.174 | 149 | 110 | 0 | 101 | 249 | 149 | 297 | 1.69e-12 | 67.0 |
| MS.gene21864.t1 | MTR_7g446510 | 25.137 | 183 | 136 | 1 | 67 | 249 | 131 | 312 | 5.56e-12 | 65.9 |
| MS.gene21864.t1 | MTR_1g008290 | 26.364 | 110 | 80 | 1 | 105 | 214 | 36 | 144 | 7.66e-12 | 62.4 |
| MS.gene21864.t1 | MTR_2g098920 | 29.245 | 106 | 74 | 1 | 15 | 120 | 78 | 182 | 7.25e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21864.t1 | AT4G38180 | 37.327 | 217 | 130 | 4 | 16 | 228 | 72 | 286 | 4.93e-35 | 134 |
| MS.gene21864.t1 | AT4G15090 | 28.448 | 232 | 152 | 5 | 20 | 244 | 54 | 278 | 1.28e-21 | 95.5 |
| MS.gene21864.t1 | AT4G15090 | 28.448 | 232 | 152 | 5 | 20 | 244 | 54 | 278 | 1.28e-21 | 95.5 |
| MS.gene21864.t1 | AT4G15090 | 28.448 | 232 | 152 | 5 | 20 | 244 | 54 | 278 | 1.28e-21 | 95.5 |
| MS.gene21864.t1 | AT4G15090 | 28.448 | 232 | 152 | 5 | 20 | 244 | 54 | 278 | 1.28e-21 | 95.5 |
| MS.gene21864.t1 | AT4G15090 | 28.448 | 232 | 152 | 5 | 20 | 244 | 54 | 278 | 1.28e-21 | 95.5 |
| MS.gene21864.t1 | AT3G06250 | 28.182 | 220 | 115 | 6 | 14 | 231 | 187 | 365 | 3.92e-18 | 85.1 |
| MS.gene21864.t1 | AT3G06250 | 34.862 | 109 | 58 | 2 | 10 | 118 | 21 | 116 | 9.53e-12 | 65.9 |
| MS.gene21864.t1 | AT3G06250 | 28.182 | 220 | 115 | 6 | 14 | 231 | 187 | 365 | 3.92e-18 | 85.1 |
| MS.gene21864.t1 | AT3G06250 | 34.862 | 109 | 58 | 2 | 10 | 118 | 21 | 116 | 9.53e-12 | 65.9 |
| MS.gene21864.t1 | AT3G06250 | 28.182 | 220 | 115 | 6 | 14 | 231 | 187 | 365 | 3.92e-18 | 85.1 |
| MS.gene21864.t1 | AT3G06250 | 34.862 | 109 | 58 | 2 | 10 | 118 | 21 | 116 | 9.53e-12 | 65.9 |
| MS.gene21864.t1 | AT2G27110 | 26.484 | 219 | 134 | 5 | 13 | 231 | 45 | 236 | 2.43e-16 | 79.7 |
| MS.gene21864.t1 | AT2G27110 | 26.484 | 219 | 134 | 5 | 13 | 231 | 45 | 236 | 2.43e-16 | 79.7 |
| MS.gene21864.t1 | AT1G10240 | 28.636 | 220 | 150 | 5 | 18 | 231 | 49 | 267 | 3.09e-16 | 79.3 |
| MS.gene21864.t1 | AT1G10240 | 28.636 | 220 | 150 | 5 | 18 | 231 | 49 | 267 | 3.09e-16 | 79.3 |
| MS.gene21864.t1 | AT1G76320 | 28.708 | 209 | 128 | 8 | 27 | 229 | 7 | 200 | 1.51e-15 | 77.4 |
| MS.gene21864.t1 | AT1G76320 | 28.708 | 209 | 128 | 8 | 27 | 229 | 7 | 200 | 1.54e-15 | 77.4 |
| MS.gene21864.t1 | AT1G76320 | 28.708 | 209 | 128 | 8 | 27 | 229 | 7 | 200 | 1.54e-15 | 77.4 |
| MS.gene21864.t1 | AT1G76320 | 27.751 | 209 | 130 | 8 | 27 | 229 | 7 | 200 | 1.76e-15 | 77.0 |
| MS.gene21864.t1 | AT1G52520 | 27.570 | 214 | 141 | 6 | 19 | 231 | 87 | 287 | 1.37e-14 | 74.3 |
| MS.gene21864.t1 | AT5G28530 | 24.898 | 245 | 164 | 5 | 5 | 231 | 40 | 282 | 2.22e-12 | 67.8 |
| MS.gene21864.t1 | AT5G28530 | 24.898 | 245 | 164 | 5 | 5 | 231 | 40 | 282 | 2.29e-12 | 67.8 |
| MS.gene21864.t1 | AT5G28530 | 24.898 | 245 | 164 | 5 | 5 | 231 | 40 | 282 | 2.29e-12 | 67.8 |
| MS.gene21864.t1 | AT3G22170 | 23.457 | 243 | 146 | 5 | 16 | 243 | 69 | 286 | 2.72e-12 | 67.8 |
| MS.gene21864.t1 | AT3G22170 | 23.457 | 243 | 146 | 5 | 16 | 243 | 69 | 286 | 2.72e-12 | 67.8 |
| MS.gene21864.t1 | AT1G80010 | 25.676 | 222 | 153 | 5 | 20 | 234 | 98 | 314 | 4.47e-11 | 63.9 |
Find 49 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAAATATTTGGAGTTATTT+AGG | 0.112891 | 5.1:+2010682 | MS.gene21864:CDS |
| TTGCAGCAATCTTCTAATTT+TGG | 0.156725 | 5.1:+2012826 | MS.gene21864:intron |
| ATTATTCTTAAACCCTTCTT+TGG | 0.257903 | 5.1:-2010428 | None:intergenic |
| CAAATATTTGGAGTTATTTA+GGG | 0.270669 | 5.1:+2010683 | MS.gene21864:CDS |
| CACGTTTGACCAATGTCTTT+TGG | 0.271763 | 5.1:+2010884 | MS.gene21864:CDS |
| CCTTTCTGAAGGCATATTCT+TGG | 0.293242 | 5.1:-2010327 | None:intergenic |
| GTATGCGAGTTACAAATATT+TGG | 0.295956 | 5.1:+2010671 | MS.gene21864:CDS |
| CAGGTTATAAAAGTGTAGTC+TGG | 0.335264 | 5.1:+2013115 | MS.gene21864:intron |
| CATTCACCATGGACTTTATG+AGG | 0.372652 | 5.1:-2010645 | None:intergenic |
| CTGTCTTAAGTATTGTTACT+TGG | 0.393261 | 5.1:-2012859 | None:intergenic |
| AGATTTAATGTGAGCGAGGA+AGG | 0.415325 | 5.1:+2010514 | MS.gene21864:CDS |
| TCTCAACCCGTTGAAATTGA+TGG | 0.428719 | 5.1:+2010244 | MS.gene21864:CDS |
| GACATTTGACATATTTCTCA+TGG | 0.442957 | 5.1:-2010614 | None:intergenic |
| AAGCTGAAATTGATTGAAGC+TGG | 0.470684 | 5.1:+2010775 | MS.gene21864:CDS |
| CGCAACAAATGCCTTTGCTC+AGG | 0.473041 | 5.1:-2010589 | None:intergenic |
| CAAGAATATGCCTTCAGAAA+GGG | 0.477601 | 5.1:+2010328 | MS.gene21864:CDS |
| AGCTGAAATTGATTGAAGCT+GGG | 0.479699 | 5.1:+2010776 | MS.gene21864:CDS |
| TTGGAGTTATTTAGGGGAAG+AGG | 0.485109 | 5.1:+2010690 | MS.gene21864:CDS |
| TCTGACCCATCAATTTCAAC+GGG | 0.500790 | 5.1:-2010250 | None:intergenic |
| TCTTAAGTATTGTTACTTGG+AGG | 0.507520 | 5.1:-2012856 | None:intergenic |
| TTCTGACCCATCAATTTCAA+CGG | 0.510463 | 5.1:-2010251 | None:intergenic |
| AAGAACAAATTGCAAAGCTA+TGG | 0.512487 | 5.1:+2010489 | MS.gene21864:CDS |
| CCAAGAATATGCCTTCAGAA+AGG | 0.516475 | 5.1:+2010327 | MS.gene21864:CDS |
| AGGTTATAAAAGTGTAGTCT+GGG | 0.519719 | 5.1:+2013116 | MS.gene21864:intron |
| TGCACACTATAATAGAAGAT+AGG | 0.524822 | 5.1:-2010847 | None:intergenic |
| CTCAACCCGTTGAAATTGAT+GGG | 0.534737 | 5.1:+2010245 | MS.gene21864:CDS |
| AATATTTGTAACTCGCATAC+CGG | 0.535536 | 5.1:-2010668 | None:intergenic |
| GCTTGATACTGCAGTTCAGA+AGG | 0.537750 | 5.1:+2012124 | MS.gene21864:CDS |
| AGAAATATGTCAAATGTCAA+AGG | 0.545496 | 5.1:+2010619 | MS.gene21864:CDS |
| AACAAATGCCTTTGCTCAGG+TGG | 0.559202 | 5.1:-2010586 | None:intergenic |
| GTCGGTGGATATAACAATCT+CGG | 0.563144 | 5.1:+2010712 | MS.gene21864:CDS |
| AGTTATTTAGGGGAAGAGGT+CGG | 0.564345 | 5.1:+2010694 | MS.gene21864:CDS |
| CACACTAAAACCCTTTCTGA+AGG | 0.567547 | 5.1:-2010338 | None:intergenic |
| ATAAAGTCCATGGTGAATGC+CGG | 0.567614 | 5.1:+2010649 | MS.gene21864:CDS |
| CAAGTAACAATACTTAAGAC+AGG | 0.568946 | 5.1:+2012860 | MS.gene21864:CDS |
| ACTTTGTTCCACCTGAGCAA+AGG | 0.578696 | 5.1:+2010578 | MS.gene21864:CDS |
| ATGTGAGCGAGGAAGGAGTG+TGG | 0.579206 | 5.1:+2010521 | MS.gene21864:CDS |
| ACCATCCCTCCAAAAGACAT+TGG | 0.582059 | 5.1:-2010893 | None:intergenic |
| TTTAAGAATAATGAATCTGA+AGG | 0.582819 | 5.1:+2010439 | MS.gene21864:CDS |
| AGGAGGCCTCATAAAGTCCA+TGG | 0.601163 | 5.1:+2010639 | MS.gene21864:CDS |
| TCGCATACCGGCATTCACCA+TGG | 0.601352 | 5.1:-2010656 | None:intergenic |
| GCTCAGGTGGAACAAAGTCA+TGG | 0.606620 | 5.1:-2010573 | None:intergenic |
| GACAGGTGCAAGCACTTCTG+TGG | 0.609614 | 5.1:+2011698 | MS.gene21864:intron |
| CGATAATATGTCATATCATG+AGG | 0.616676 | 5.1:+2011734 | MS.gene21864:CDS |
| TATTTAGGGGAAGAGGTCGG+TGG | 0.620164 | 5.1:+2010697 | MS.gene21864:CDS |
| AAATATTTGGAGTTATTTAG+GGG | 0.630032 | 5.1:+2010684 | MS.gene21864:CDS |
| AATATGTCAAATGTCAAAGG+AGG | 0.636188 | 5.1:+2010622 | MS.gene21864:CDS |
| GCTGAAATTGATTGAAGCTG+GGG | 0.639401 | 5.1:+2010777 | MS.gene21864:CDS |
| GGTGAGATTTAATGTGAGCG+AGG | 0.649783 | 5.1:+2010510 | MS.gene21864:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATACATATGTAATCTTTTTA+AGG | + | chr5.1:2012992-2013011 | MS.gene21864:intron | 15.0% |
| !!! | GGTTATATTATTAAATTTTC+TGG | + | chr5.1:2013014-2013033 | MS.gene21864:intron | 15.0% |
| !!! | GTCTTATTATAATTTAGTTT+TGG | + | chr5.1:2012058-2012077 | MS.gene21864:intron | 15.0% |
| !!! | TACATATGTAATCTTTTTAA+GGG | + | chr5.1:2012993-2013012 | MS.gene21864:intron | 15.0% |
| !! | AGAAAAGCAAAAAAAGATAA+AGG | + | chr5.1:2012323-2012342 | MS.gene21864:intron | 20.0% |
| !! | ATTATAATAAGACTTCAGAA+TGG | - | chr5.1:2012051-2012070 | None:intergenic | 20.0% |
| !! | CTCATTTAAAAAATGCTTAA+AGG | - | chr5.1:2011667-2011686 | None:intergenic | 20.0% |
| !! | TCTGTGTTTGAATTTAAATT+GGG | - | chr5.1:2012170-2012189 | None:intergenic | 20.0% |
| !! | TTCTGTGTTTGAATTTAAAT+TGG | - | chr5.1:2012171-2012190 | None:intergenic | 20.0% |
| !! | TTTAAGAATAATGAATCTGA+AGG | + | chr5.1:2010439-2010458 | MS.gene21864:CDS | 20.0% |
| !!! | AAATATTTGGAGTTATTTAG+GGG | + | chr5.1:2010684-2010703 | MS.gene21864:CDS | 20.0% |
| !!! | AATATCTGCTTTGTTTATAT+AGG | + | chr5.1:2013038-2013057 | MS.gene21864:intron | 20.0% |
| !!! | ACAAATATTTGGAGTTATTT+AGG | + | chr5.1:2010682-2010701 | MS.gene21864:CDS | 20.0% |
| !!! | CAAATATTTGGAGTTATTTA+GGG | + | chr5.1:2010683-2010702 | MS.gene21864:CDS | 20.0% |
| !!! | TAAATATTGTTTTTGGTTGT+TGG | - | chr5.1:2011125-2011144 | None:intergenic | 20.0% |
| !!! | TGATCTGTAAATATTGTTTT+TGG | - | chr5.1:2011132-2011151 | None:intergenic | 20.0% |
| !!! | TTTTAAATGAGTATCTTGAT+GGG | + | chr5.1:2011676-2011695 | MS.gene21864:intron | 20.0% |
| !!! | TTTTTAAATGAGTATCTTGA+TGG | + | chr5.1:2011675-2011694 | MS.gene21864:intron | 20.0% |
| ! | AATGCTATGAATTATACGAA+CGG | + | chr5.1:2012482-2012501 | MS.gene21864:intron | 25.0% |
| ! | ACAAATCAAGTCATACTTAT+TGG | - | chr5.1:2010980-2010999 | None:intergenic | 25.0% |
| ! | ACAATAATTTGATCTTAGGA+TGG | + | chr5.1:2012885-2012904 | MS.gene21864:intron | 25.0% |
| ! | AGAAATATGTCAAATGTCAA+AGG | + | chr5.1:2010619-2010638 | MS.gene21864:CDS | 25.0% |
| ! | ATTATTCTTAAACCCTTCTT+TGG | - | chr5.1:2010431-2010450 | None:intergenic | 25.0% |
| ! | CATTGGCAAAATGTAATATT+TGG | + | chr5.1:2011024-2011043 | MS.gene21864:intron | 25.0% |
| ! | GGTAACAATAATTTGATCTT+AGG | + | chr5.1:2012881-2012900 | MS.gene21864:intron | 25.0% |
| !! | AAAGTTGATTATGATTGCTT+TGG | + | chr5.1:2010922-2010941 | MS.gene21864:intron | 25.0% |
| !! | AAGTTGATTATGATTGCTTT+GGG | + | chr5.1:2010923-2010942 | MS.gene21864:intron | 25.0% |
| !! | ACTAAAAATGTATTTTCTGC+TGG | + | chr5.1:2011426-2011445 | MS.gene21864:intron | 25.0% |
| !! | ATATTACATTTTGCCAATGA+TGG | - | chr5.1:2011023-2011042 | None:intergenic | 25.0% |
| !! | CATACCCAATAAAAAGTATA+TGG | + | chr5.1:2011770-2011789 | MS.gene21864:intron | 25.0% |
| !! | TAAAAAGTATATGGTGACTT+TGG | + | chr5.1:2011779-2011798 | MS.gene21864:intron | 25.0% |
| !! | TCATTTAGTTCCTTATTACA+AGG | + | chr5.1:2012648-2012667 | MS.gene21864:intron | 25.0% |
| !!! | AAAGTATTTTTGGAGAGTAT+GGG | + | chr5.1:2011096-2011115 | MS.gene21864:intron | 25.0% |
| !!! | AGTCACCATATACTTTTTAT+TGG | - | chr5.1:2011778-2011797 | None:intergenic | 25.0% |
| !!! | AGTTTTATTGTTCCAAAGAA+GGG | + | chr5.1:2010416-2010435 | MS.gene21864:CDS | 25.0% |
| !!! | GGATGTTTTAAATGATACAA+TGG | + | chr5.1:2012906-2012925 | MS.gene21864:intron | 25.0% |
| !!! | GTCACCATATACTTTTTATT+GGG | - | chr5.1:2011777-2011796 | None:intergenic | 25.0% |
| !!! | TTGGTTGTTCAAAGTATTTT+TGG | + | chr5.1:2011086-2011105 | MS.gene21864:intron | 25.0% |
| AAAAAATGCTCCTTCTCATT+TGG | + | chr5.1:2011227-2011246 | MS.gene21864:intron | 30.0% | |
| AAAAATGCTCCTTCTCATTT+GGG | + | chr5.1:2011228-2011247 | MS.gene21864:intron | 30.0% | |
| AAGAACAAATTGCAAAGCTA+TGG | + | chr5.1:2010489-2010508 | MS.gene21864:CDS | 30.0% | |
| AAGAAGCAAGAAAAATCATG+TGG | + | chr5.1:2012096-2012115 | MS.gene21864:CDS | 30.0% | |
| AAGGAACTAAATGAAGTTGA+TGG | - | chr5.1:2012642-2012661 | None:intergenic | 30.0% | |
| AATATGTCAAATGTCAAAGG+AGG | + | chr5.1:2010622-2010641 | MS.gene21864:CDS | 30.0% | |
| AATATTTGTAACTCGCATAC+CGG | - | chr5.1:2010671-2010690 | None:intergenic | 30.0% | |
| ACCAGTACATCTTAAAAAGA+TGG | + | chr5.1:2011913-2011932 | MS.gene21864:intron | 30.0% | |
| ACCTGTAACATATCTAATGA+AGG | - | chr5.1:2012527-2012546 | None:intergenic | 30.0% | |
| ACTACAAGTTCAATAACCAA+TGG | + | chr5.1:2011996-2012015 | MS.gene21864:intron | 30.0% | |
| AGAAGCAAGAAAAATCATGT+GGG | + | chr5.1:2012097-2012116 | MS.gene21864:CDS | 30.0% | |
| AGAGGTTTCATTAAGTAACA+AGG | - | chr5.1:2011055-2011074 | None:intergenic | 30.0% | |
| AGTTGATTATGATTGCTTTG+GGG | + | chr5.1:2010924-2010943 | MS.gene21864:intron | 30.0% | |
| ATGAATTCCTATCAACTTCA+TGG | + | chr5.1:2011348-2011367 | MS.gene21864:intron | 30.0% | |
| CAAGTAACAATACTTAAGAC+AGG | + | chr5.1:2012860-2012879 | MS.gene21864:CDS | 30.0% | |
| CGATAATATGTCATATCATG+AGG | + | chr5.1:2011734-2011753 | MS.gene21864:CDS | 30.0% | |
| GACATTTGACATATTTCTCA+TGG | - | chr5.1:2010617-2010636 | None:intergenic | 30.0% | |
| GTATGCGAGTTACAAATATT+TGG | + | chr5.1:2010671-2010690 | MS.gene21864:CDS | 30.0% | |
| TACTTTGAACAACCAATTAC+AGG | - | chr5.1:2011082-2011101 | None:intergenic | 30.0% | |
| TCCTTCATTAGATATGTTAC+AGG | + | chr5.1:2012523-2012542 | MS.gene21864:intron | 30.0% | |
| TGCACACTATAATAGAAGAT+AGG | - | chr5.1:2010850-2010869 | None:intergenic | 30.0% | |
| TGTCATAAGTTTGATTCCAT+GGG | + | chr5.1:2011831-2011850 | MS.gene21864:intron | 30.0% | |
| TTGTCATAAGTTTGATTCCA+TGG | + | chr5.1:2011830-2011849 | MS.gene21864:intron | 30.0% | |
| ! | AGGTTATAAAAGTGTAGTCT+GGG | + | chr5.1:2013116-2013135 | MS.gene21864:intron | 30.0% |
| ! | ATGGATTATGTTGCTGTTAT+AGG | - | chr5.1:2012623-2012642 | None:intergenic | 30.0% |
| ! | CTGTCTTAAGTATTGTTACT+TGG | - | chr5.1:2012862-2012881 | None:intergenic | 30.0% |
| ! | TCTTAAGTATTGTTACTTGG+AGG | - | chr5.1:2012859-2012878 | None:intergenic | 30.0% |
| ! | TTGCAGCAATCTTCTAATTT+TGG | + | chr5.1:2012826-2012845 | MS.gene21864:intron | 30.0% |
| !! | AATTTTTCGACATGCATCTA+TGG | + | chr5.1:2011626-2011645 | MS.gene21864:intron | 30.0% |
| !! | AGCAATCTTCTAATTTTGGT+TGG | + | chr5.1:2012830-2012849 | MS.gene21864:intron | 30.0% |
| !!! | ACCATCTTTTTAAGATGTAC+TGG | - | chr5.1:2011917-2011936 | None:intergenic | 30.0% |
| !!! | CAAAGTATTTTTGGAGAGTA+TGG | + | chr5.1:2011095-2011114 | MS.gene21864:intron | 30.0% |
| !!! | CACACAATTTTTTGAGAAGA+TGG | + | chr5.1:2011521-2011540 | MS.gene21864:intron | 30.0% |
| !!! | GAGTTTTATTGTTCCAAAGA+AGG | + | chr5.1:2010415-2010434 | MS.gene21864:CDS | 30.0% |
| !!! | GCAATCTTCTAATTTTGGTT+GGG | + | chr5.1:2012831-2012850 | MS.gene21864:intron | 30.0% |
| AAACCTCTGTTTCCTGTAAT+TGG | + | chr5.1:2011067-2011086 | MS.gene21864:intron | 35.0% | |
| AAGCTGAAATTGATTGAAGC+TGG | + | chr5.1:2010775-2010794 | MS.gene21864:CDS | 35.0% | |
| AAGGAATGACTAATGTTCGT+AGG | + | chr5.1:2012267-2012286 | MS.gene21864:intron | 35.0% | |
| ACGAACATTAGTCATTCCTT+TGG | - | chr5.1:2012267-2012286 | None:intergenic | 35.0% | |
| AGCTGAAATTGATTGAAGCT+GGG | + | chr5.1:2010776-2010795 | MS.gene21864:CDS | 35.0% | |
| ATCAACTTCATGGTCACAAA+TGG | + | chr5.1:2011358-2011377 | MS.gene21864:intron | 35.0% | |
| ATGACTAATGTTCGTAGGAA+AGG | + | chr5.1:2012272-2012291 | MS.gene21864:intron | 35.0% | |
| ATGGTTTACACCAACAAATG+GGG | - | chr5.1:2011004-2011023 | None:intergenic | 35.0% | |
| CAAGAATATGCCTTCAGAAA+GGG | + | chr5.1:2010328-2010347 | MS.gene21864:CDS | 35.0% | |
| CATGTCATCGTTTGTGTTTA+TGG | + | chr5.1:2011196-2011215 | MS.gene21864:intron | 35.0% | |
| GATGGTTTACACCAACAAAT+GGG | - | chr5.1:2011005-2011024 | None:intergenic | 35.0% | |
| GTAGTAGGATCAAAACATCT+TGG | - | chr5.1:2013069-2013088 | None:intergenic | 35.0% | |
| TGAAAAACACAGTAAACCAG+TGG | - | chr5.1:2013097-2013116 | None:intergenic | 35.0% | |
| TGAGTTCACTCCTTGTAATA+AGG | - | chr5.1:2012661-2012680 | None:intergenic | 35.0% | |
| TGATGGTTTACACCAACAAA+TGG | - | chr5.1:2011006-2011025 | None:intergenic | 35.0% | |
| TGTATGAAATTCGTCACAAG+TGG | + | chr5.1:2011391-2011410 | MS.gene21864:intron | 35.0% | |
| TTCTGACCCATCAATTTCAA+CGG | - | chr5.1:2010254-2010273 | None:intergenic | 35.0% | |
| TTCTTTGTAGTCATGCATTG+CGG | + | chr5.1:2011856-2011875 | MS.gene21864:intron | 35.0% | |
| TTGAGAAGATGGTGAAAAAG+TGG | + | chr5.1:2011532-2011551 | MS.gene21864:intron | 35.0% | |
| TTGTTGGTGTAAACCATCAT+TGG | + | chr5.1:2011007-2011026 | MS.gene21864:intron | 35.0% | |
| ! | AAGAGGAATTTCAAAGCACT+TGG | + | chr5.1:2011316-2011335 | MS.gene21864:intron | 35.0% |
| ! | ACAAATAAGAGCACAGAAGA+AGG | + | chr5.1:2011969-2011988 | MS.gene21864:intron | 35.0% |
| ! | AGAGGAATTTCAAAGCACTT+GGG | + | chr5.1:2011317-2011336 | MS.gene21864:intron | 35.0% |
| ! | ATAACCAATGGTGATGATGT+CGG | + | chr5.1:2012008-2012027 | MS.gene21864:intron | 35.0% |
| ! | CAGGTTATAAAAGTGTAGTC+TGG | + | chr5.1:2013115-2013134 | MS.gene21864:intron | 35.0% |
| ! | CTTCTGTGCTCTTATTTGTA+TGG | - | chr5.1:2011968-2011987 | None:intergenic | 35.0% |
| ! | GAGAGTACAAATAGTGTGTT+GGG | + | chr5.1:2011471-2011490 | MS.gene21864:intron | 35.0% |
| ! | GGGTCAGAAGAAATTTTTCT+TGG | + | chr5.1:2010265-2010284 | MS.gene21864:CDS | 35.0% |
| ! | TGAGAGTACAAATAGTGTGT+TGG | + | chr5.1:2011470-2011489 | MS.gene21864:intron | 35.0% |
| ! | TTTGACCAATGTCTTTTGGA+GGG | + | chr5.1:2010888-2010907 | MS.gene21864:CDS | 35.0% |
| ! | TTTGTGACCATGAAGTTGAT+AGG | - | chr5.1:2011358-2011377 | None:intergenic | 35.0% |
| !! | AAGGGTTTTAGTGTGAGAAA+AGG | + | chr5.1:2010346-2010365 | MS.gene21864:CDS | 35.0% |
| !! | ACTGGTTTACTGTGTTTTTC+AGG | + | chr5.1:2013096-2013115 | MS.gene21864:intron | 35.0% |
| !! | AGGGTTTTAGTGTGAGAAAA+GGG | + | chr5.1:2010347-2010366 | MS.gene21864:CDS | 35.0% |
| !!! | CTTTTTAAGATGTACTGGTC+TGG | - | chr5.1:2011912-2011931 | None:intergenic | 35.0% |
| AAACCAGTGGCTATAGTAGT+AGG | - | chr5.1:2013084-2013103 | None:intergenic | 40.0% | |
| AAGACTTCAGAATGGCATTG+CGG | - | chr5.1:2012043-2012062 | None:intergenic | 40.0% | |
| AATGAGTATCTTGATGGGAC+AGG | + | chr5.1:2011681-2011700 | MS.gene21864:intron | 40.0% | |
| AGATTTAATGTGAGCGAGGA+AGG | + | chr5.1:2010514-2010533 | MS.gene21864:CDS | 40.0% | |
| AGTTATTTAGGGGAAGAGGT+CGG | + | chr5.1:2010694-2010713 | MS.gene21864:CDS | 40.0% | |
| ATAAAGTCCATGGTGAATGC+CGG | + | chr5.1:2010649-2010668 | MS.gene21864:CDS | 40.0% | |
| ATGACTACAAAGAATGCCCA+TGG | - | chr5.1:2011850-2011869 | None:intergenic | 40.0% | |
| CAACCAATTACAGGAAACAG+AGG | - | chr5.1:2011073-2011092 | None:intergenic | 40.0% | |
| CACAAACGATGACATGCATT+TGG | - | chr5.1:2011192-2011211 | None:intergenic | 40.0% | |
| CACACTAAAACCCTTTCTGA+AGG | - | chr5.1:2010341-2010360 | None:intergenic | 40.0% | |
| CAGAAGGTTCGACAATGTAT+TGG | + | chr5.1:2012140-2012159 | MS.gene21864:intron | 40.0% | |
| CATTCACCATGGACTTTATG+AGG | - | chr5.1:2010648-2010667 | None:intergenic | 40.0% | |
| CCAAGAATATGCCTTCAGAA+AGG | + | chr5.1:2010327-2010346 | MS.gene21864:CDS | 40.0% | |
| CCACTGAAGAATTACTTGCA+TGG | - | chr5.1:2012451-2012470 | None:intergenic | 40.0% | |
| CCATGCAAGTAATTCTTCAG+TGG | + | chr5.1:2012448-2012467 | MS.gene21864:intron | 40.0% | |
| CCGTGACAAATCAGTATGTA+CGG | - | chr5.1:2012787-2012806 | None:intergenic | 40.0% | |
| CTCAACCCGTTGAAATTGAT+GGG | + | chr5.1:2010245-2010264 | MS.gene21864:CDS | 40.0% | |
| CTGGTATCAAATCCTCTCAA+AGG | + | chr5.1:2011445-2011464 | MS.gene21864:intron | 40.0% | |
| GAAAAAGTGGCGACAATTAG+AGG | + | chr5.1:2011545-2011564 | MS.gene21864:intron | 40.0% | |
| GAACACTTTCTTGCAAAACG+AGG | + | chr5.1:2012199-2012218 | MS.gene21864:intron | 40.0% | |
| GAAGGATAAACAACTGCAGA+AGG | - | chr5.1:2012509-2012528 | None:intergenic | 40.0% | |
| GCAAGTAATTCTTCAGTGGA+TGG | + | chr5.1:2012452-2012471 | MS.gene21864:intron | 40.0% | |
| GCGACAATTAGAGGTTGAAA+AGG | + | chr5.1:2011554-2011573 | MS.gene21864:intron | 40.0% | |
| GCTGAAATTGATTGAAGCTG+GGG | + | chr5.1:2010777-2010796 | MS.gene21864:CDS | 40.0% | |
| GTCGGTGGATATAACAATCT+CGG | + | chr5.1:2010712-2010731 | MS.gene21864:CDS | 40.0% | |
| TAGGATCAAAACATCTTGGC+TGG | - | chr5.1:2013065-2013084 | None:intergenic | 40.0% | |
| TCTCAACCCGTTGAAATTGA+TGG | + | chr5.1:2010244-2010263 | MS.gene21864:CDS | 40.0% | |
| TCTGACCCATCAATTTCAAC+GGG | - | chr5.1:2010253-2010272 | None:intergenic | 40.0% | |
| TCTTTGTAGTCATGCATTGC+GGG | + | chr5.1:2011857-2011876 | MS.gene21864:intron | 40.0% | |
| TTGAGAGATCCCAAATGAGA+AGG | - | chr5.1:2011240-2011259 | None:intergenic | 40.0% | |
| TTGGAGTTATTTAGGGGAAG+AGG | + | chr5.1:2010690-2010709 | MS.gene21864:CDS | 40.0% | |
| ! | CACGTTTGACCAATGTCTTT+TGG | + | chr5.1:2010884-2010903 | MS.gene21864:CDS | 40.0% |
| ! | CCTTTCTGAAGGCATATTCT+TGG | - | chr5.1:2010330-2010349 | None:intergenic | 40.0% |
| ! | GTTTGACCAATGTCTTTTGG+AGG | + | chr5.1:2010887-2010906 | MS.gene21864:CDS | 40.0% |
| ! | TCACTGTTATTTATGACGCG+AGG | - | chr5.1:2011606-2011625 | None:intergenic | 40.0% |
| !! | CCGTACATACTGATTTGTCA+CGG | + | chr5.1:2012784-2012803 | MS.gene21864:intron | 40.0% |
| !! | CGTACATACTGATTTGTCAC+GGG | + | chr5.1:2012785-2012804 | MS.gene21864:intron | 40.0% |
| !! | TTGATTTGTGCCCCATTTGT+TGG | + | chr5.1:2010991-2011010 | MS.gene21864:intron | 40.0% |
| AACAAATGCCTTTGCTCAGG+TGG | - | chr5.1:2010589-2010608 | None:intergenic | 45.0% | |
| AAGACCGACATCATCACCAT+TGG | - | chr5.1:2012015-2012034 | None:intergenic | 45.0% | |
| AATTCGTCACAAGTGGAGCA+CGG | + | chr5.1:2011398-2011417 | MS.gene21864:intron | 45.0% | |
| ACAGATCAAGCTGCAGCTAT+GGG | + | chr5.1:2011144-2011163 | MS.gene21864:intron | 45.0% | |
| ACCATCCCTCCAAAAGACAT+TGG | - | chr5.1:2010896-2010915 | None:intergenic | 45.0% | |
| ACTTTGTTCCACCTGAGCAA+AGG | + | chr5.1:2010578-2010597 | MS.gene21864:CDS | 45.0% | |
| AGTGTGTTGGGAGAGATTGT+AGG | + | chr5.1:2011483-2011502 | MS.gene21864:intron | 45.0% | |
| CGAGGACAATGAATGCTTGA+CGG | + | chr5.1:2012217-2012236 | MS.gene21864:intron | 45.0% | |
| GAAAGAATGCGACTCAGAAG+AGG | + | chr5.1:2011299-2011318 | MS.gene21864:intron | 45.0% | |
| GATCCTACTACTATAGCCAC+TGG | + | chr5.1:2013078-2013097 | MS.gene21864:intron | 45.0% | |
| GCTTGATACTGCAGTTCAGA+AGG | + | chr5.1:2012124-2012143 | MS.gene21864:CDS | 45.0% | |
| GGTGAGATTTAATGTGAGCG+AGG | + | chr5.1:2010510-2010529 | MS.gene21864:CDS | 45.0% | |
| TACAGATCAAGCTGCAGCTA+TGG | + | chr5.1:2011143-2011162 | MS.gene21864:intron | 45.0% | |
| TGTACTCTCACTCCTTTGAG+AGG | - | chr5.1:2011460-2011479 | None:intergenic | 45.0% | |
| TTTGGACTCTTCTACCGCAA+CGG | + | chr5.1:2011797-2011816 | MS.gene21864:intron | 45.0% | |
| ! | CTGTTATTTATGACGCGAGG+AGG | - | chr5.1:2011603-2011622 | None:intergenic | 45.0% |
| ! | GTCATTCCTTTGGTCTTTGC+CGG | - | chr5.1:2012257-2012276 | None:intergenic | 45.0% |
| !! | ACCAATGTCTTTTGGAGGGA+TGG | + | chr5.1:2010892-2010911 | MS.gene21864:CDS | 45.0% |
| ACAACTGCAACTGACCGTTG+CGG | - | chr5.1:2011814-2011833 | None:intergenic | 50.0% | |
| AGGAGGCCTCATAAAGTCCA+TGG | + | chr5.1:2010639-2010658 | MS.gene21864:CDS | 50.0% | |
| CGCAACAAATGCCTTTGCTC+AGG | - | chr5.1:2010592-2010611 | None:intergenic | 50.0% | |
| GACGGTTTCTAATCCACGTC+CGG | + | chr5.1:2012235-2012254 | MS.gene21864:intron | 50.0% | |
| GCAGCTATGGGCAAAGCAAT+CGG | + | chr5.1:2011156-2011175 | MS.gene21864:intron | 50.0% | |
| GCTCAGGTGGAACAAAGTCA+TGG | - | chr5.1:2010576-2010595 | None:intergenic | 50.0% | |
| TATTTAGGGGAAGAGGTCGG+TGG | + | chr5.1:2010697-2010716 | MS.gene21864:CDS | 50.0% | |
| ATGTGAGCGAGGAAGGAGTG+TGG | + | chr5.1:2010521-2010540 | MS.gene21864:CDS | 55.0% | |
| GACAGGTGCAAGCACTTCTG+TGG | + | chr5.1:2011698-2011717 | MS.gene21864:intron | 55.0% | |
| TCGCATACCGGCATTCACCA+TGG | - | chr5.1:2010659-2010678 | None:intergenic | 55.0% | |
| CCACGTCCGGCAAAGACCAA+AGG | + | chr5.1:2012248-2012267 | MS.gene21864:intron | 60.0% | |
| ! | CCTTTGGTCTTTGCCGGACG+TGG | - | chr5.1:2012251-2012270 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 2010229 | 2013152 | 2010229 | ID=MS.gene21864 |
| chr5.1 | mRNA | 2010229 | 2013152 | 2010229 | ID=MS.gene21864.t1;Parent=MS.gene21864 |
| chr5.1 | exon | 2010229 | 2010913 | 2010229 | ID=MS.gene21864.t1.exon1;Parent=MS.gene21864.t1 |
| chr5.1 | CDS | 2010229 | 2010913 | 2010229 | ID=cds.MS.gene21864.t1;Parent=MS.gene21864.t1 |
| chr5.1 | exon | 2011703 | 2011755 | 2011703 | ID=MS.gene21864.t1.exon2;Parent=MS.gene21864.t1 |
| chr5.1 | CDS | 2011703 | 2011755 | 2011703 | ID=cds.MS.gene21864.t1;Parent=MS.gene21864.t1 |
| chr5.1 | exon | 2012075 | 2012145 | 2012075 | ID=MS.gene21864.t1.exon3;Parent=MS.gene21864.t1 |
| chr5.1 | CDS | 2012075 | 2012145 | 2012075 | ID=cds.MS.gene21864.t1;Parent=MS.gene21864.t1 |
| chr5.1 | exon | 2012832 | 2012881 | 2012832 | ID=MS.gene21864.t1.exon4;Parent=MS.gene21864.t1 |
| chr5.1 | CDS | 2012832 | 2012881 | 2012832 | ID=cds.MS.gene21864.t1;Parent=MS.gene21864.t1 |
| chr5.1 | exon | 2013118 | 2013152 | 2013118 | ID=MS.gene21864.t1.exon5;Parent=MS.gene21864.t1 |
| chr5.1 | CDS | 2013118 | 2013152 | 2013118 | ID=cds.MS.gene21864.t1;Parent=MS.gene21864.t1 |
| Gene Sequence |
| Protein sequence |
