Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21904.t1 | XP_024632961.1 | 84.8 | 800 | 94 | 4 | 1 | 772 | 1 | 800 | 0.00E+00 | 1355.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21904.t1 | Q9SZL8 | 27.0 | 636 | 394 | 11 | 32 | 665 | 70 | 637 | 4.4e-64 | 247.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21904.t1 | D3YBB9 | 76.9 | 774 | 159 | 4 | 1 | 764 | 49 | 812 | 0.0e+00 | 1194.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene21904.t1 | TF | FAR1 |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21904.t1 | MTR_0558s0020 | 87.500 | 296 | 36 | 1 | 1 | 295 | 1 | 296 | 0.0 | 548 |
MS.gene21904.t1 | MTR_1g083640 | 83.099 | 284 | 32 | 1 | 1 | 268 | 1 | 284 | 2.00e-172 | 497 |
MS.gene21904.t1 | MTR_8g446020 | 73.898 | 295 | 38 | 1 | 1 | 295 | 1 | 256 | 1.93e-152 | 445 |
MS.gene21904.t1 | MTR_6g090505 | 83.544 | 237 | 39 | 0 | 65 | 301 | 1 | 237 | 2.00e-142 | 423 |
MS.gene21904.t1 | MTR_6g090505 | 67.647 | 102 | 6 | 2 | 396 | 495 | 230 | 306 | 3.80e-34 | 134 |
MS.gene21904.t1 | MTR_6g090505 | 75.510 | 49 | 12 | 0 | 567 | 615 | 314 | 362 | 9.35e-11 | 64.7 |
MS.gene21904.t1 | MTR_2g014100 | 82.449 | 245 | 34 | 1 | 1 | 236 | 1 | 245 | 3.38e-142 | 418 |
MS.gene21904.t1 | MTR_0337s0040 | 72.031 | 261 | 33 | 2 | 1 | 260 | 1 | 222 | 4.53e-124 | 371 |
MS.gene21904.t1 | MTR_3g008240 | 84.236 | 203 | 31 | 1 | 1 | 202 | 1 | 203 | 4.63e-118 | 354 |
MS.gene21904.t1 | MTR_4g040430 | 83.663 | 202 | 29 | 1 | 1 | 202 | 1 | 198 | 1.84e-117 | 352 |
MS.gene21904.t1 | MTR_0337s0060 | 58.861 | 316 | 30 | 4 | 447 | 759 | 21 | 239 | 1.46e-108 | 331 |
MS.gene21904.t1 | MTR_5g071590 | 74.444 | 180 | 33 | 2 | 1 | 167 | 1 | 180 | 2.70e-90 | 281 |
MS.gene21904.t1 | MTR_1g055240 | 88.028 | 142 | 17 | 0 | 91 | 232 | 3 | 144 | 7.78e-87 | 271 |
MS.gene21904.t1 | MTR_0019s0290 | 82.353 | 153 | 24 | 1 | 84 | 233 | 8 | 160 | 7.01e-86 | 269 |
MS.gene21904.t1 | MTR_3g028680 | 81.013 | 158 | 27 | 1 | 618 | 772 | 1 | 158 | 6.34e-84 | 265 |
MS.gene21904.t1 | MTR_2g067090 | 78.065 | 155 | 31 | 1 | 621 | 772 | 99 | 253 | 3.37e-75 | 246 |
MS.gene21904.t1 | MTR_4g133495 | 62.088 | 182 | 43 | 2 | 576 | 754 | 88 | 246 | 3.97e-66 | 221 |
MS.gene21904.t1 | MTR_4g133340 | 62.088 | 182 | 43 | 2 | 576 | 754 | 88 | 246 | 3.97e-66 | 221 |
MS.gene21904.t1 | MTR_1281s0010 | 82.569 | 109 | 19 | 0 | 19 | 127 | 1 | 109 | 1.88e-57 | 191 |
MS.gene21904.t1 | MTR_6g051425 | 32.075 | 318 | 185 | 6 | 40 | 341 | 22 | 324 | 1.31e-38 | 147 |
MS.gene21904.t1 | MTR_4g008820 | 83.750 | 80 | 12 | 1 | 1 | 79 | 125 | 204 | 1.74e-31 | 131 |
MS.gene21904.t1 | MTR_8g046060 | 77.273 | 88 | 11 | 2 | 1 | 79 | 91 | 178 | 3.77e-31 | 122 |
MS.gene21904.t1 | MTR_2g067130 | 62.963 | 81 | 24 | 2 | 695 | 772 | 46 | 123 | 5.23e-22 | 93.6 |
MS.gene21904.t1 | MTR_1g070355 | 26.852 | 324 | 216 | 6 | 41 | 362 | 80 | 384 | 2.33e-19 | 93.2 |
MS.gene21904.t1 | MTR_0402s0040 | 25.405 | 185 | 119 | 4 | 49 | 233 | 40 | 205 | 2.06e-14 | 77.0 |
MS.gene21904.t1 | MTR_0337s0050 | 75.000 | 36 | 9 | 0 | 259 | 294 | 14 | 49 | 1.51e-13 | 67.0 |
MS.gene21904.t1 | MTR_4g035820 | 22.414 | 290 | 192 | 7 | 17 | 299 | 61 | 324 | 7.44e-13 | 72.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21904.t1 | AT4G38180 | 27.769 | 641 | 383 | 13 | 32 | 665 | 70 | 637 | 1.08e-70 | 248 |
MS.gene21904.t1 | AT4G15090 | 25.000 | 696 | 435 | 15 | 50 | 741 | 66 | 678 | 3.59e-59 | 216 |
MS.gene21904.t1 | AT4G15090 | 25.000 | 696 | 435 | 15 | 50 | 741 | 66 | 678 | 3.59e-59 | 216 |
MS.gene21904.t1 | AT4G15090 | 25.000 | 696 | 435 | 15 | 50 | 741 | 66 | 678 | 3.59e-59 | 216 |
MS.gene21904.t1 | AT4G15090 | 25.000 | 696 | 435 | 15 | 50 | 741 | 66 | 678 | 3.59e-59 | 216 |
MS.gene21904.t1 | AT4G15090 | 25.000 | 696 | 435 | 15 | 50 | 741 | 66 | 678 | 3.59e-59 | 216 |
MS.gene21904.t1 | AT2G27110 | 25.070 | 714 | 423 | 19 | 10 | 719 | 29 | 634 | 8.24e-54 | 200 |
MS.gene21904.t1 | AT2G27110 | 25.070 | 714 | 423 | 19 | 10 | 719 | 29 | 634 | 8.24e-54 | 200 |
MS.gene21904.t1 | AT2G27110 | 27.308 | 509 | 313 | 11 | 213 | 719 | 36 | 489 | 4.71e-53 | 196 |
MS.gene21904.t1 | AT3G06250 | 25.118 | 633 | 351 | 16 | 34 | 661 | 189 | 703 | 3.77e-52 | 194 |
MS.gene21904.t1 | AT3G06250 | 25.118 | 633 | 351 | 16 | 34 | 661 | 189 | 703 | 3.77e-52 | 194 |
MS.gene21904.t1 | AT3G06250 | 25.118 | 633 | 351 | 16 | 34 | 661 | 189 | 703 | 3.77e-52 | 194 |
MS.gene21904.t1 | AT1G76320 | 24.815 | 677 | 413 | 19 | 50 | 720 | 12 | 598 | 3.70e-50 | 187 |
MS.gene21904.t1 | AT1G76320 | 24.332 | 674 | 418 | 17 | 50 | 719 | 12 | 597 | 2.09e-49 | 186 |
MS.gene21904.t1 | AT1G76320 | 24.852 | 676 | 412 | 19 | 50 | 719 | 12 | 597 | 2.20e-49 | 186 |
MS.gene21904.t1 | AT1G76320 | 24.852 | 676 | 412 | 19 | 50 | 719 | 12 | 597 | 2.20e-49 | 186 |
MS.gene21904.t1 | AT3G22170 | 22.466 | 730 | 449 | 17 | 34 | 753 | 69 | 691 | 1.24e-47 | 182 |
MS.gene21904.t1 | AT3G22170 | 22.466 | 730 | 449 | 17 | 34 | 753 | 69 | 691 | 1.24e-47 | 182 |
MS.gene21904.t1 | AT5G18960 | 24.730 | 647 | 359 | 18 | 24 | 661 | 200 | 727 | 1.55e-46 | 178 |
MS.gene21904.t1 | AT5G18960 | 24.730 | 647 | 359 | 18 | 24 | 661 | 200 | 727 | 1.55e-46 | 178 |
MS.gene21904.t1 | AT4G38170 | 24.532 | 481 | 295 | 13 | 235 | 703 | 24 | 448 | 7.51e-44 | 167 |
MS.gene21904.t1 | AT1G10240 | 24.719 | 623 | 377 | 19 | 49 | 659 | 62 | 604 | 5.17e-42 | 164 |
MS.gene21904.t1 | AT1G10240 | 24.719 | 623 | 377 | 19 | 49 | 659 | 62 | 604 | 5.17e-42 | 164 |
MS.gene21904.t1 | AT5G28530 | 24.100 | 639 | 388 | 17 | 40 | 660 | 60 | 619 | 7.98e-42 | 163 |
MS.gene21904.t1 | AT5G28530 | 23.944 | 639 | 385 | 18 | 40 | 660 | 60 | 615 | 5.82e-41 | 160 |
MS.gene21904.t1 | AT5G28530 | 23.944 | 639 | 385 | 18 | 40 | 660 | 60 | 615 | 5.82e-41 | 160 |
MS.gene21904.t1 | AT2G32250 | 23.490 | 745 | 433 | 20 | 4 | 743 | 10 | 622 | 2.41e-39 | 156 |
MS.gene21904.t1 | AT2G32250 | 23.490 | 745 | 433 | 20 | 4 | 743 | 10 | 622 | 3.32e-39 | 156 |
MS.gene21904.t1 | AT2G32250 | 23.490 | 745 | 433 | 20 | 4 | 743 | 10 | 622 | 3.32e-39 | 156 |
MS.gene21904.t1 | AT2G32250 | 23.490 | 745 | 433 | 20 | 4 | 743 | 10 | 622 | 3.86e-39 | 156 |
MS.gene21904.t1 | AT2G32250 | 23.490 | 745 | 433 | 20 | 4 | 743 | 10 | 622 | 3.86e-39 | 156 |
MS.gene21904.t1 | AT2G32250 | 23.490 | 745 | 433 | 20 | 4 | 743 | 10 | 622 | 3.86e-39 | 156 |
MS.gene21904.t1 | AT2G32250 | 23.446 | 708 | 408 | 18 | 41 | 743 | 3 | 581 | 1.85e-38 | 154 |
MS.gene21904.t1 | AT2G32250 | 23.446 | 708 | 408 | 18 | 41 | 743 | 3 | 581 | 2.12e-38 | 153 |
MS.gene21904.t1 | AT1G80010 | 23.913 | 644 | 385 | 23 | 41 | 662 | 101 | 661 | 1.30e-36 | 147 |
MS.gene21904.t1 | AT1G52520 | 22.080 | 625 | 407 | 16 | 41 | 662 | 91 | 638 | 2.20e-33 | 137 |
MS.gene21904.t1 | AT4G19990 | 28.731 | 268 | 184 | 4 | 219 | 483 | 163 | 426 | 2.48e-27 | 119 |
MS.gene21904.t1 | AT4G19990 | 35.338 | 133 | 72 | 3 | 591 | 721 | 495 | 615 | 2.23e-12 | 71.2 |
MS.gene21904.t1 | AT4G19990 | 28.731 | 268 | 184 | 4 | 219 | 483 | 163 | 426 | 2.60e-27 | 119 |
MS.gene21904.t1 | AT4G19990 | 35.338 | 133 | 72 | 3 | 591 | 721 | 495 | 615 | 2.20e-12 | 71.2 |
MS.gene21904.t1 | AT4G19990 | 28.731 | 268 | 184 | 4 | 219 | 483 | 163 | 426 | 2.60e-27 | 119 |
MS.gene21904.t1 | AT4G19990 | 35.338 | 133 | 72 | 3 | 591 | 721 | 495 | 615 | 2.20e-12 | 71.2 |
MS.gene21904.t1 | AT4G19990 | 28.731 | 268 | 184 | 4 | 219 | 483 | 106 | 369 | 2.60e-27 | 118 |
MS.gene21904.t1 | AT4G19990 | 35.338 | 133 | 72 | 3 | 591 | 721 | 438 | 558 | 2.16e-12 | 71.2 |
MS.gene21904.t1 | AT4G19990 | 28.731 | 268 | 184 | 4 | 219 | 483 | 177 | 440 | 2.98e-27 | 119 |
MS.gene21904.t1 | AT4G19990 | 35.338 | 133 | 72 | 3 | 591 | 721 | 509 | 629 | 2.62e-12 | 70.9 |
MS.gene21904.t1 | AT4G19990 | 28.731 | 268 | 184 | 4 | 219 | 483 | 163 | 426 | 3.81e-27 | 118 |
MS.gene21904.t1 | AT4G19990 | 35.338 | 133 | 72 | 3 | 591 | 721 | 495 | 615 | 2.34e-12 | 71.2 |
MS.gene21904.t1 | AT4G19990 | 28.731 | 268 | 184 | 4 | 219 | 483 | 163 | 426 | 3.81e-27 | 118 |
MS.gene21904.t1 | AT4G19990 | 35.338 | 133 | 72 | 3 | 591 | 721 | 495 | 615 | 2.34e-12 | 71.2 |
MS.gene21904.t1 | AT5G28530 | 21.781 | 629 | 352 | 20 | 40 | 660 | 60 | 556 | 1.35e-22 | 103 |
MS.gene21904.t1 | AT5G28530 | 21.622 | 629 | 349 | 21 | 40 | 660 | 60 | 552 | 7.38e-22 | 101 |
Find 116 sgRNAs with CRISPR-Local
Find 185 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCATGCTGAGTTGGACTTTA+AGG | 0.133287 | 5.1:+2346565 | MS.gene21904:CDS |
TTTCGATGAGTTAACTAATT+TGG | 0.156761 | 5.1:+2346256 | MS.gene21904:CDS |
AGTCGCTTCTTTGACCTAAT+TGG | 0.186128 | 5.1:-2347391 | None:intergenic |
CTTTAGTCATTTCAACATTA+TGG | 0.194287 | 5.1:+2346523 | MS.gene21904:CDS |
CAACAAGATTATGCTCTATT+TGG | 0.198611 | 5.1:+2345472 | MS.gene21904:CDS |
TTCATTTCAGCTGCCTTTCT+TGG | 0.201003 | 5.1:+2345975 | MS.gene21904:intron |
CATCGTAAGAGTGTGTTATT+TGG | 0.276792 | 5.1:+2346008 | MS.gene21904:CDS |
TATGGTTTGAGGTTTCTTAT+TGG | 0.280533 | 5.1:-2346102 | None:intergenic |
TTCTTTGACCTAATTGGATT+TGG | 0.299426 | 5.1:-2347385 | None:intergenic |
AATCAGATTTCGACTACAAT+TGG | 0.318540 | 5.1:+2346297 | MS.gene21904:CDS |
TGTTCTTGAGGCAGGGAAAA+AGG | 0.322946 | 5.1:+2347237 | MS.gene21904:CDS |
ACCAGCCTGGTCTGTGTATA+TGG | 0.341000 | 5.1:-2346120 | None:intergenic |
GCCGATATTTATTGTTTGTT+CGG | 0.341758 | 5.1:-2345522 | None:intergenic |
GGTTTCGAATGTTGATGTTT+TGG | 0.354913 | 5.1:+2346820 | MS.gene21904:CDS |
TATGCATTGGTCTTCAGTTT+GGG | 0.370760 | 5.1:+2346397 | MS.gene21904:CDS |
CTCAACGGTGTTCTTGAGGC+AGG | 0.386173 | 5.1:+2347229 | MS.gene21904:CDS |
AACAATAAATATCGGCCATT+AGG | 0.388497 | 5.1:+2345529 | MS.gene21904:CDS |
ACCGAACAAACAATAAATAT+CGG | 0.389395 | 5.1:+2345521 | MS.gene21904:CDS |
GTATGCATTGGTCTTCAGTT+TGG | 0.392120 | 5.1:+2346396 | MS.gene21904:CDS |
GTCTTTAGTGCCAACATTCA+TGG | 0.395146 | 5.1:-2347113 | None:intergenic |
TTCTCATACTCAACAAGAAC+TGG | 0.395633 | 5.1:-2344992 | None:intergenic |
AAGAAAGACCAAATCCAATT+AGG | 0.397771 | 5.1:+2347377 | MS.gene21904:CDS |
TTTGGTCTTTCTTTGAACTT+TGG | 0.398856 | 5.1:-2347367 | None:intergenic |
TTCCTTCAAATACTATTATG+AGG | 0.399583 | 5.1:+2346697 | MS.gene21904:CDS |
GAGGAGTTTCTTATTTCTAA+AGG | 0.403538 | 5.1:+2347262 | MS.gene21904:CDS |
TAAAGAATCATGGAAGTCTT+TGG | 0.408500 | 5.1:+2344763 | MS.gene21904:CDS |
CATGTCGTATGTTTGAGAAC+CGG | 0.411671 | 5.1:+2346945 | MS.gene21904:CDS |
GATTATGATCTTCAAACCTT+GGG | 0.413114 | 5.1:-2346868 | None:intergenic |
ATAACACTGGATTCTCTGTT+AGG | 0.417808 | 5.1:+2344834 | MS.gene21904:CDS |
CGATTATGATCTTCAAACCT+TGG | 0.425681 | 5.1:-2346869 | None:intergenic |
CGTTATGTTTGTAACAAAGA+AGG | 0.427485 | 5.1:+2344917 | MS.gene21904:CDS |
CGAGAAGTAAATGAAGTTCA+AGG | 0.430014 | 5.1:+2345169 | MS.gene21904:CDS |
AGCTGGAATATATTTGAAGT+TGG | 0.433136 | 5.1:+2345051 | MS.gene21904:CDS |
TGGTCTGTGTATATGGTTTG+AGG | 0.447350 | 5.1:-2346113 | None:intergenic |
GAAAGGGTTGGTTGTAAAGC+TGG | 0.447509 | 5.1:+2345034 | MS.gene21904:CDS |
CGCTTTAAAACATATTGTGC+AGG | 0.447633 | 5.1:-2347046 | None:intergenic |
GCTTTAATAAATTCTAAAGC+TGG | 0.450264 | 5.1:+2345199 | MS.gene21904:CDS |
ATCTGAGAGTGGACAATTGA+CGG | 0.452529 | 5.1:+2344688 | MS.gene21904:CDS |
TGGTCTTTGCTCATGGCACA+TGG | 0.452802 | 5.1:+2346187 | MS.gene21904:CDS |
GGCCTACTTCGGACTTTAAG+TGG | 0.458978 | 5.1:+2346351 | MS.gene21904:CDS |
ATGTCGTATGTTTGAGAACC+GGG | 0.461344 | 5.1:+2346946 | MS.gene21904:CDS |
ACAAAATAAGAAATCGGATA+AGG | 0.469178 | 5.1:+2344883 | MS.gene21904:CDS |
GGGTTGTCACAGTCGACATT+GGG | 0.480993 | 5.1:+2346903 | MS.gene21904:CDS |
GAAGTGATGGGTCAAGGAGT+TGG | 0.484292 | 5.1:+2345244 | MS.gene21904:CDS |
CTCCTCATAATAGTATTTGA+AGG | 0.485089 | 5.1:-2346699 | None:intergenic |
TTACAACCAACCCTTTCCTC+TGG | 0.485330 | 5.1:-2345028 | None:intergenic |
TTTAATTATGCATATAACAC+TGG | 0.485542 | 5.1:+2344821 | MS.gene21904:CDS |
CTGTCTGTGAACCATCTGTT+GGG | 0.487793 | 5.1:+2347338 | MS.gene21904:CDS |
TCTAATGACAACTCGTCAAA+AGG | 0.488137 | 5.1:+2345312 | MS.gene21904:CDS |
CTCAAGTAGCACAAATGCTC+TGG | 0.489977 | 5.1:-2345139 | None:intergenic |
CAATTCACAAAATAAGAAAT+CGG | 0.490263 | 5.1:+2344877 | MS.gene21904:CDS |
TATGAGGAGGACACAACAAA+AGG | 0.490908 | 5.1:+2346713 | MS.gene21904:CDS |
ATGATTGTCAAAACCAAGAA+AGG | 0.491378 | 5.1:-2345988 | None:intergenic |
ATCAGATTTCGACTACAATT+GGG | 0.491708 | 5.1:+2346298 | MS.gene21904:CDS |
CGTCAAAAGGAGATGGTGGC+TGG | 0.492100 | 5.1:+2345325 | MS.gene21904:CDS |
ACATTATGGTTCAGAGAATG+AGG | 0.494022 | 5.1:+2346537 | MS.gene21904:CDS |
GACCGCATAAGCTGACTGTT+GGG | 0.496307 | 5.1:-2346617 | None:intergenic |
GAGAACATCTTATGAAGTGA+TGG | 0.499875 | 5.1:+2345231 | MS.gene21904:CDS |
TGTCTTCTGCAGCATCAACT+TGG | 0.502977 | 5.1:-2345417 | None:intergenic |
GCTGTCTGTGAACCATCTGT+TGG | 0.504047 | 5.1:+2347337 | MS.gene21904:CDS |
AAATGCTCTGGTTTATGTAA+TGG | 0.504865 | 5.1:-2345127 | None:intergenic |
CTCATTCAAATCGTATGCAT+TGG | 0.507227 | 5.1:+2346384 | MS.gene21904:CDS |
ATCATAATCGACTTGATGAA+AGG | 0.507955 | 5.1:+2346882 | MS.gene21904:CDS |
TTTAAGTCCGAAAATCGAAA+AGG | 0.508080 | 5.1:-2345283 | None:intergenic |
GAGGGATAATCATGCTGAGT+TGG | 0.508852 | 5.1:+2346556 | MS.gene21904:CDS |
ATTGGTCTTCAGTTTGGGTG+AGG | 0.509410 | 5.1:+2346402 | MS.gene21904:CDS |
TGTCTATAAGATATATAAGT+GGG | 0.514682 | 5.1:+2345087 | MS.gene21904:CDS |
GATCTTCAAACCTTGGGGAA+AGG | 0.519004 | 5.1:-2346862 | None:intergenic |
TAAAGAATCGAACAAGTGAA+TGG | 0.519618 | 5.1:-2346505 | None:intergenic |
TAACAAAGAAGGTTTCAAGA+AGG | 0.525236 | 5.1:+2344928 | MS.gene21904:CDS |
TCATAATCGACTTGATGAAA+GGG | 0.526860 | 5.1:+2346883 | MS.gene21904:CDS |
CATAATAGTATTTGAAGGAA+AGG | 0.529686 | 5.1:-2346694 | None:intergenic |
AGGGTTGTCACAGTCGACAT+TGG | 0.538587 | 5.1:+2346902 | MS.gene21904:CDS |
AATCGAACAAGTGAATGGTC+TGG | 0.540971 | 5.1:-2346500 | None:intergenic |
ATGAGGAGGACACAACAAAA+GGG | 0.542065 | 5.1:+2346714 | MS.gene21904:CDS |
AACAAAGAAGGTTTCAAGAA+GGG | 0.545537 | 5.1:+2344929 | MS.gene21904:CDS |
CATTTAGTGATAAAGAATCA+TGG | 0.546005 | 5.1:+2344753 | MS.gene21904:CDS |
ACTTCAACAACGCACCAGCC+TGG | 0.557139 | 5.1:-2346133 | None:intergenic |
CTGAAATCCACCATGAATGT+TGG | 0.557140 | 5.1:+2347103 | MS.gene21904:CDS |
AATGAAGCTCTCTCGAAACC+AGG | 0.565261 | 5.1:+2345379 | MS.gene21904:CDS |
TGAAAATTCAGTTATTGATG+CGG | 0.565546 | 5.1:+2344712 | MS.gene21904:CDS |
GTGATGGGTCAAGGAGTTGG+AGG | 0.568802 | 5.1:+2345247 | MS.gene21904:CDS |
TACACGTGTTTGCGCAGATG+CGG | 0.571672 | 5.1:+2347189 | MS.gene21904:CDS |
ATGTCTATAAGATATATAAG+TGG | 0.572287 | 5.1:+2345086 | MS.gene21904:CDS |
GGACCGCATAAGCTGACTGT+TGG | 0.579264 | 5.1:-2346618 | None:intergenic |
TTTGGTGCAGTCCCAACAGA+TGG | 0.581566 | 5.1:-2347349 | None:intergenic |
TGGTGTATACTTGTTTACTA+CGG | 0.585960 | 5.1:-2346639 | None:intergenic |
ATATTAACTTCATCTGAGAG+TGG | 0.588105 | 5.1:+2344677 | MS.gene21904:CDS |
TCTTATGAAGTGATGGGTCA+AGG | 0.589029 | 5.1:+2345238 | MS.gene21904:CDS |
TCAACGGTGTTCTTGAGGCA+GGG | 0.590097 | 5.1:+2347230 | MS.gene21904:CDS |
ACCATATACACAGACCAGGC+TGG | 0.590176 | 5.1:+2346119 | MS.gene21904:CDS |
ATTTCTCAACGGTGTTCTTG+AGG | 0.591378 | 5.1:+2347225 | MS.gene21904:CDS |
TTGAAGAAAACCTTTCCCCA+AGG | 0.594796 | 5.1:+2346852 | MS.gene21904:CDS |
TGAAGACTTAGAAGGCGTAA+CGG | 0.598405 | 5.1:-2347305 | None:intergenic |
GACAACTCGTCAAAAGGAGA+TGG | 0.599038 | 5.1:+2345318 | MS.gene21904:CDS |
AGAACATCTTATGAAGTGAT+GGG | 0.601988 | 5.1:+2345232 | MS.gene21904:CDS |
AACTCGTCAAAAGGAGATGG+TGG | 0.603142 | 5.1:+2345321 | MS.gene21904:CDS |
ACGTGTTTGCGCAGATGCGG+AGG | 0.605934 | 5.1:+2347192 | MS.gene21904:CDS |
ATCCCAACAGTCAGCTTATG+CGG | 0.606153 | 5.1:+2346615 | MS.gene21904:CDS |
CTTCAAATACTATTATGAGG+AGG | 0.607664 | 5.1:+2346700 | MS.gene21904:CDS |
TTGATATCGTTGCGCTTCAG+TGG | 0.611060 | 5.1:-2347137 | None:intergenic |
AGAACTGGACTGTCACATGT+TGG | 0.620791 | 5.1:-2344977 | None:intergenic |
AGCCACTTAAAGTCCGAAGT+AGG | 0.621799 | 5.1:-2346353 | None:intergenic |
GGGTCAAGGAGTTGGAGGCA+CGG | 0.621882 | 5.1:+2345252 | MS.gene21904:CDS |
ATTATGATCTTCAAACCTTG+GGG | 0.630358 | 5.1:-2346867 | None:intergenic |
GGTCTTTGCTCATGGCACAT+GGG | 0.639768 | 5.1:+2346188 | MS.gene21904:CDS |
TTTAGTGCCAACATTCATGG+TGG | 0.641441 | 5.1:-2347110 | None:intergenic |
CATTATGGTTCAGAGAATGA+GGG | 0.643278 | 5.1:+2346538 | MS.gene21904:CDS |
GATTTCAGCTTATCGACAGA+CGG | 0.644926 | 5.1:-2347088 | None:intergenic |
TGAATAAATGAAAAGCAAGA+TGG | 0.655697 | 5.1:-2346659 | None:intergenic |
GCATCTGAAATATTTCTCAA+CGG | 0.661104 | 5.1:+2347214 | MS.gene21904:CDS |
CATGTCGACATAAGAAACCC+CGG | 0.663279 | 5.1:-2346964 | None:intergenic |
TCAAACCATATACACAGACC+AGG | 0.671057 | 5.1:+2346115 | MS.gene21904:CDS |
TGTCGTATGTTTGAGAACCG+GGG | 0.673760 | 5.1:+2346947 | MS.gene21904:CDS |
ATGTTGATAATGATAATGAG+AGG | 0.683310 | 5.1:+2346798 | MS.gene21904:CDS |
TGTTGATAATGATAATGAGA+GGG | 0.689129 | 5.1:+2346799 | MS.gene21904:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAACCATAATTATAGTTTAA+TGG | - | chr5.1:2347764-2347783 | None:intergenic | 15.0% |
!! | AAACCATTAAACTATAATTA+TGG | + | chr5.1:2347758-2347777 | MS.gene21904:intron | 15.0% |
!!! | TGTTTTTTATGTTATAAGTT+AGG | + | chr5.1:2347517-2347536 | MS.gene21904:intron | 15.0% |
!! | ATGTCTATAAGATATATAAG+TGG | + | chr5.1:2345086-2345105 | MS.gene21904:CDS | 20.0% |
!! | CAATTCACAAAATAAGAAAT+CGG | + | chr5.1:2344877-2344896 | MS.gene21904:CDS | 20.0% |
!! | TGTCTATAAGATATATAAGT+GGG | + | chr5.1:2345087-2345106 | MS.gene21904:CDS | 20.0% |
!! | TTTAATTATGCATATAACAC+TGG | + | chr5.1:2344821-2344840 | MS.gene21904:CDS | 20.0% |
!!! | AATTTAATGTTCTGGTTTAT+GGG | + | chr5.1:2345704-2345723 | MS.gene21904:intron | 20.0% |
!!! | ACGCATTTATTACTATATTT+TGG | + | chr5.1:2347688-2347707 | MS.gene21904:intron | 20.0% |
!!! | ATGATGAAAAACTGTTTTAA+TGG | + | chr5.1:2346326-2346345 | MS.gene21904:CDS | 20.0% |
!!! | CTATACATTTTCACATTTTT+TGG | + | chr5.1:2347660-2347679 | MS.gene21904:intron | 20.0% |
!!! | TGAATGTTTATATTGATTGA+AGG | + | chr5.1:2345676-2345695 | MS.gene21904:intron | 20.0% |
! | AAAACACCTTGAAAAACATT+CGG | - | chr5.1:2346164-2346183 | None:intergenic | 25.0% |
! | AAACCAAATTAACAGTCTAA+TGG | - | chr5.1:2347721-2347740 | None:intergenic | 25.0% |
! | AAACCATTAGACTGTTAATT+TGG | + | chr5.1:2347715-2347734 | MS.gene21904:intron | 25.0% |
! | AATTCTTGATTGTTATGCAT+TGG | + | chr5.1:2347615-2347634 | MS.gene21904:intron | 25.0% |
! | ACAAAATAAGAAATCGGATA+AGG | + | chr5.1:2344883-2344902 | MS.gene21904:CDS | 25.0% |
! | ACCGAACAAACAATAAATAT+CGG | + | chr5.1:2345521-2345540 | MS.gene21904:CDS | 25.0% |
! | AGTACAAAATACTAACCTAA+TGG | - | chr5.1:2345547-2345566 | None:intergenic | 25.0% |
! | CATAATAGTATTTGAAGGAA+AGG | - | chr5.1:2346697-2346716 | None:intergenic | 25.0% |
! | CATTTAGTGATAAAGAATCA+TGG | + | chr5.1:2344753-2344772 | MS.gene21904:CDS | 25.0% |
! | CTTTAGTCATTTCAACATTA+TGG | + | chr5.1:2346523-2346542 | MS.gene21904:CDS | 25.0% |
! | TGAAAATTCAGTTATTGATG+CGG | + | chr5.1:2344712-2344731 | MS.gene21904:CDS | 25.0% |
! | TGAAATTTGAATGAATGTTC+TGG | + | chr5.1:2345594-2345613 | MS.gene21904:intron | 25.0% |
! | TGAATAAATGAAAAGCAAGA+TGG | - | chr5.1:2346662-2346681 | None:intergenic | 25.0% |
! | TGATGCTTTAACTAAAAAAG+CGG | + | chr5.1:2347548-2347567 | MS.gene21904:intron | 25.0% |
! | TTCCTTCAAATACTATTATG+AGG | + | chr5.1:2346697-2346716 | MS.gene21904:CDS | 25.0% |
! | TTTCGATGAGTTAACTAATT+TGG | + | chr5.1:2346256-2346275 | MS.gene21904:CDS | 25.0% |
!! | AGGTTTAGAATTTAATGTTC+TGG | + | chr5.1:2345696-2345715 | MS.gene21904:intron | 25.0% |
!! | TGTTGTATTTTGTTCTGATT+TGG | + | chr5.1:2345952-2345971 | MS.gene21904:intron | 25.0% |
!! | TTGGTTTGAATATTATCTTC+TGG | + | chr5.1:2347634-2347653 | MS.gene21904:intron | 25.0% |
!! | TTTTCAATTACTGAGTTAAG+TGG | + | chr5.1:2347792-2347811 | MS.gene21904:intron | 25.0% |
!!! | ATGTTGATAATGATAATGAG+AGG | + | chr5.1:2346798-2346817 | MS.gene21904:CDS | 25.0% |
!!! | CTTATTTTGTGAATTGTTCT+TGG | - | chr5.1:2344873-2344892 | None:intergenic | 25.0% |
!!! | GAATTTAATGTTCTGGTTTA+TGG | + | chr5.1:2345703-2345722 | MS.gene21904:intron | 25.0% |
!!! | GCTTTAATAAATTCTAAAGC+TGG | + | chr5.1:2345199-2345218 | MS.gene21904:CDS | 25.0% |
!!! | TGAAAAACTGTTTTAATGGA+AGG | + | chr5.1:2346330-2346349 | MS.gene21904:CDS | 25.0% |
!!! | TGTTGATAATGATAATGAGA+GGG | + | chr5.1:2346799-2346818 | MS.gene21904:CDS | 25.0% |
AAACACATATGATCTTTCCA+TGG | - | chr5.1:2345767-2345786 | None:intergenic | 30.0% | |
AACAAAGAAGGTTTCAAGAA+GGG | + | chr5.1:2344929-2344948 | MS.gene21904:CDS | 30.0% | |
AACAATAAATATCGGCCATT+AGG | + | chr5.1:2345529-2345548 | MS.gene21904:CDS | 30.0% | |
AAGAAAGACCAAATCCAATT+AGG | + | chr5.1:2347377-2347396 | MS.gene21904:CDS | 30.0% | |
AATCAGATTTCGACTACAAT+TGG | + | chr5.1:2346297-2346316 | MS.gene21904:CDS | 30.0% | |
AGAACATCTTATGAAGTGAT+GGG | + | chr5.1:2345232-2345251 | MS.gene21904:CDS | 30.0% | |
ATATTAACTTCATCTGAGAG+TGG | + | chr5.1:2344677-2344696 | MS.gene21904:CDS | 30.0% | |
ATCAGATTTCGACTACAATT+GGG | + | chr5.1:2346298-2346317 | MS.gene21904:CDS | 30.0% | |
ATGATTGTCAAAACCAAGAA+AGG | - | chr5.1:2345991-2346010 | None:intergenic | 30.0% | |
ATTATGATCTTCAAACCTTG+GGG | - | chr5.1:2346870-2346889 | None:intergenic | 30.0% | |
CAACAAGATTATGCTCTATT+TGG | + | chr5.1:2345472-2345491 | MS.gene21904:CDS | 30.0% | |
CGTTATGTTTGTAACAAAGA+AGG | + | chr5.1:2344917-2344936 | MS.gene21904:CDS | 30.0% | |
CTCCTCATAATAGTATTTGA+AGG | - | chr5.1:2346702-2346721 | None:intergenic | 30.0% | |
CTGGTATATGTGTGTTAATT+TGG | + | chr5.1:2345633-2345652 | MS.gene21904:intron | 30.0% | |
CTTCAAATACTATTATGAGG+AGG | + | chr5.1:2346700-2346719 | MS.gene21904:CDS | 30.0% | |
GAGAATGCAAAGAAAAATCT+CGG | + | chr5.1:2346212-2346231 | MS.gene21904:CDS | 30.0% | |
GATTATGATCTTCAAACCTT+GGG | - | chr5.1:2346871-2346890 | None:intergenic | 30.0% | |
GCCGATATTTATTGTTTGTT+CGG | - | chr5.1:2345525-2345544 | None:intergenic | 30.0% | |
TAAAGAAAAACCAGAGGAAA+GGG | + | chr5.1:2345018-2345037 | MS.gene21904:CDS | 30.0% | |
TAAAGAATCATGGAAGTCTT+TGG | + | chr5.1:2344763-2344782 | MS.gene21904:CDS | 30.0% | |
TAAAGAATCGAACAAGTGAA+TGG | - | chr5.1:2346508-2346527 | None:intergenic | 30.0% | |
TAACAAAGAAGGTTTCAAGA+AGG | + | chr5.1:2344928-2344947 | MS.gene21904:CDS | 30.0% | |
TGGATATCATAGTAAAAACC+TGG | - | chr5.1:2345400-2345419 | None:intergenic | 30.0% | |
TGGTGTATACTTGTTTACTA+CGG | - | chr5.1:2346642-2346661 | None:intergenic | 30.0% | |
TTCTTTGACCTAATTGGATT+TGG | - | chr5.1:2347388-2347407 | None:intergenic | 30.0% | |
TTTAAGTCCGAAAATCGAAA+AGG | - | chr5.1:2345286-2345305 | None:intergenic | 30.0% | |
TTTCTATTTACACAGCACAA+TGG | + | chr5.1:2345911-2345930 | MS.gene21904:intron | 30.0% | |
! | AAATGCTCTGGTTTATGTAA+TGG | - | chr5.1:2345130-2345149 | None:intergenic | 30.0% |
! | AGCTGGAATATATTTGAAGT+TGG | + | chr5.1:2345051-2345070 | MS.gene21904:CDS | 30.0% |
! | CAAAGTTTTCACAATTGAGA+AGG | + | chr5.1:2346757-2346776 | MS.gene21904:CDS | 30.0% |
! | GAATCTTCCTTTTCGATTTT+CGG | + | chr5.1:2345276-2345295 | MS.gene21904:CDS | 30.0% |
! | GCATCTGAAATATTTCTCAA+CGG | + | chr5.1:2347214-2347233 | MS.gene21904:CDS | 30.0% |
! | TATGGTTTGAGGTTTCTTAT+TGG | - | chr5.1:2346105-2346124 | None:intergenic | 30.0% |
! | TCAATTCCGAATGTTTTTCA+AGG | + | chr5.1:2346155-2346174 | MS.gene21904:CDS | 30.0% |
! | TCAGTTTTCAATTCAATGAG+TGG | - | chr5.1:2347936-2347955 | None:intergenic | 30.0% |
! | TGAGGCTTTAACAAATTAAG+CGG | + | chr5.1:2347486-2347505 | MS.gene21904:intron | 30.0% |
! | TTTGGTCTTTCTTTGAACTT+TGG | - | chr5.1:2347370-2347389 | None:intergenic | 30.0% |
!! | ACATGTTTTCAAGATTTTGG+AGG | + | chr5.1:2346982-2347001 | MS.gene21904:CDS | 30.0% |
!! | ATCATAATCGACTTGATGAA+AGG | + | chr5.1:2346882-2346901 | MS.gene21904:CDS | 30.0% |
!! | ATGTTCTGGTTTAGAATTGA+AGG | + | chr5.1:2345608-2345627 | MS.gene21904:intron | 30.0% |
!! | GAGGAGTTTCTTATTTCTAA+AGG | + | chr5.1:2347262-2347281 | MS.gene21904:CDS | 30.0% |
!! | TCATAATCGACTTGATGAAA+GGG | + | chr5.1:2346883-2346902 | MS.gene21904:CDS | 30.0% |
!! | TCGACATGTTTTCAAGATTT+TGG | + | chr5.1:2346979-2346998 | MS.gene21904:CDS | 30.0% |
!!! | AAGACATAGCCAGTATTTTT+TGG | + | chr5.1:2345434-2345453 | MS.gene21904:CDS | 30.0% |
!!! | AGACATAGCCAGTATTTTTT+GGG | + | chr5.1:2345435-2345454 | MS.gene21904:CDS | 30.0% |
!!! | CTGCACAATATGTTTTAAAG+CGG | + | chr5.1:2347047-2347066 | MS.gene21904:CDS | 30.0% |
!!! | GTTTTTCAAGGTGTTTTTCA+TGG | + | chr5.1:2346167-2346186 | MS.gene21904:CDS | 30.0% |
ACATTATGGTTCAGAGAATG+AGG | + | chr5.1:2346537-2346556 | MS.gene21904:CDS | 35.0% | |
ATAACACTGGATTCTCTGTT+AGG | + | chr5.1:2344834-2344853 | MS.gene21904:CDS | 35.0% | |
CATAAATTCCAAGGCAAGAT+AGG | - | chr5.1:2345734-2345753 | None:intergenic | 35.0% | |
CATTATGGTTCAGAGAATGA+GGG | + | chr5.1:2346538-2346557 | MS.gene21904:CDS | 35.0% | |
CGAGAAGTAAATGAAGTTCA+AGG | + | chr5.1:2345169-2345188 | MS.gene21904:CDS | 35.0% | |
CGATTATGATCTTCAAACCT+TGG | - | chr5.1:2346872-2346891 | None:intergenic | 35.0% | |
CTAAAGAAAAACCAGAGGAA+AGG | + | chr5.1:2345017-2345036 | MS.gene21904:CDS | 35.0% | |
CTCATTCAAATCGTATGCAT+TGG | + | chr5.1:2346384-2346403 | MS.gene21904:CDS | 35.0% | |
GAAAGCTAAAGAAAAACCAG+AGG | + | chr5.1:2345012-2345031 | MS.gene21904:CDS | 35.0% | |
GAAGCAAAAGAAAGATGATG+AGG | + | chr5.1:2347468-2347487 | MS.gene21904:intron | 35.0% | |
GACAGAAATTCCTTATAGCT+CGG | + | chr5.1:2347443-2347462 | MS.gene21904:intron | 35.0% | |
GAGAACATCTTATGAAGTGA+TGG | + | chr5.1:2345231-2345250 | MS.gene21904:CDS | 35.0% | |
GTCTGCTTAATCCTAAAAAC+AGG | + | chr5.1:2344954-2344973 | MS.gene21904:CDS | 35.0% | |
TCTAATGACAACTCGTCAAA+AGG | + | chr5.1:2345312-2345331 | MS.gene21904:CDS | 35.0% | |
TGTACAGAGCATAAATTCCA+AGG | - | chr5.1:2345743-2345762 | None:intergenic | 35.0% | |
TTCTCATACTCAACAAGAAC+TGG | - | chr5.1:2344995-2345014 | None:intergenic | 35.0% | |
! | CATCGTAAGAGTGTGTTATT+TGG | + | chr5.1:2346008-2346027 | MS.gene21904:CDS | 35.0% |
! | GAGGCTTTAACAAATTAAGC+GGG | + | chr5.1:2347487-2347506 | MS.gene21904:intron | 35.0% |
! | GGTTTCGAATGTTGATGTTT+TGG | + | chr5.1:2346820-2346839 | MS.gene21904:CDS | 35.0% |
! | TCTTTCAATGCTTTTCTTCG+TGG | + | chr5.1:2346467-2346486 | MS.gene21904:CDS | 35.0% |
! | TGGTTTAGAATTGAAGGTTC+TGG | + | chr5.1:2345614-2345633 | MS.gene21904:intron | 35.0% |
! | TTTTAATGGAAGGCCTACTT+CGG | + | chr5.1:2346340-2346359 | MS.gene21904:CDS | 35.0% |
! | TTTTTCATGGTCTTTGCTCA+TGG | + | chr5.1:2346180-2346199 | MS.gene21904:CDS | 35.0% |
!! | ACTGCTTTTGAAGACTTAGA+AGG | - | chr5.1:2347316-2347335 | None:intergenic | 35.0% |
!! | CGCTTTAAAACATATTGTGC+AGG | - | chr5.1:2347049-2347068 | None:intergenic | 35.0% |
!! | TATGCATTGGTCTTCAGTTT+GGG | + | chr5.1:2346397-2346416 | MS.gene21904:CDS | 35.0% |
!! | TTCAAGATTTTGGAGGTCTT+AGG | + | chr5.1:2346989-2347008 | MS.gene21904:CDS | 35.0% |
!!! | AGACATCAGCTACTTTTGAT+TGG | + | chr5.1:2346051-2346070 | MS.gene21904:CDS | 35.0% |
!!! | CACAATATGTTTTAAAGCGG+TGG | + | chr5.1:2347050-2347069 | MS.gene21904:CDS | 35.0% |
AATCGAACAAGTGAATGGTC+TGG | - | chr5.1:2346503-2346522 | None:intergenic | 40.0% | |
ACCTATGATCTTTGCATAGC+TGG | - | chr5.1:2345861-2345880 | None:intergenic | 40.0% | |
AGTCGCTTCTTTGACCTAAT+TGG | - | chr5.1:2347394-2347413 | None:intergenic | 40.0% | |
ATCTGAGAGTGGACAATTGA+CGG | + | chr5.1:2344688-2344707 | MS.gene21904:CDS | 40.0% | |
ATGAGGAGGACACAACAAAA+GGG | + | chr5.1:2346714-2346733 | MS.gene21904:CDS | 40.0% | |
ATGTCGTATGTTTGAGAACC+GGG | + | chr5.1:2346946-2346965 | MS.gene21904:CDS | 40.0% | |
ATTTATGCTCTGTACAGCCA+TGG | + | chr5.1:2345747-2345766 | MS.gene21904:intron | 40.0% | |
ATTTCTCAACGGTGTTCTTG+AGG | + | chr5.1:2347225-2347244 | MS.gene21904:CDS | 40.0% | |
CATGTCGTATGTTTGAGAAC+CGG | + | chr5.1:2346945-2346964 | MS.gene21904:CDS | 40.0% | |
CTGAAATCCACCATGAATGT+TGG | + | chr5.1:2347103-2347122 | MS.gene21904:CDS | 40.0% | |
GATTTCAGCTTATCGACAGA+CGG | - | chr5.1:2347091-2347110 | None:intergenic | 40.0% | |
GTCAATTCTGATGTAATGCG+CGG | + | chr5.1:2347879-2347898 | MS.gene21904:intron | 40.0% | |
GTCTTTAGTGCCAACATTCA+TGG | - | chr5.1:2347116-2347135 | None:intergenic | 40.0% | |
TATGAGGAGGACACAACAAA+AGG | + | chr5.1:2346713-2346732 | MS.gene21904:CDS | 40.0% | |
TCAAACCATATACACAGACC+AGG | + | chr5.1:2346115-2346134 | MS.gene21904:CDS | 40.0% | |
TCCAGCTATGCAAAGATCAT+AGG | + | chr5.1:2345857-2345876 | MS.gene21904:intron | 40.0% | |
TCCATCTGCCCAAAAAATAC+TGG | - | chr5.1:2345446-2345465 | None:intergenic | 40.0% | |
TGGTCTGTGTATATGGTTTG+AGG | - | chr5.1:2346116-2346135 | None:intergenic | 40.0% | |
TTCATTTCAGCTGCCTTTCT+TGG | + | chr5.1:2345975-2345994 | MS.gene21904:intron | 40.0% | |
TTGAAGAAAACCTTTCCCCA+AGG | + | chr5.1:2346852-2346871 | MS.gene21904:CDS | 40.0% | |
TTTAGTGCCAACATTCATGG+TGG | - | chr5.1:2347113-2347132 | None:intergenic | 40.0% | |
TTTGCTTCTTCCGAGCTATA+AGG | - | chr5.1:2347456-2347475 | None:intergenic | 40.0% | |
! | TCATGCTGAGTTGGACTTTA+AGG | + | chr5.1:2346565-2346584 | MS.gene21904:CDS | 40.0% |
! | TGAAGACTTAGAAGGCGTAA+CGG | - | chr5.1:2347308-2347327 | None:intergenic | 40.0% |
!! | AAGATTTTGGAGGTCTTAGG+TGG | + | chr5.1:2346992-2347011 | MS.gene21904:CDS | 40.0% |
!! | GTATGCATTGGTCTTCAGTT+TGG | + | chr5.1:2346396-2346415 | MS.gene21904:CDS | 40.0% |
!! | TCACATGTTGGCCTGTTTTT+AGG | - | chr5.1:2344968-2344987 | None:intergenic | 40.0% |
!! | TCTTATGAAGTGATGGGTCA+AGG | + | chr5.1:2345238-2345257 | MS.gene21904:CDS | 40.0% |
AACTCGTCAAAAGGAGATGG+TGG | + | chr5.1:2345321-2345340 | MS.gene21904:CDS | 45.0% | |
AATGAAGCTCTCTCGAAACC+AGG | + | chr5.1:2345379-2345398 | MS.gene21904:CDS | 45.0% | |
AGAACTGGACTGTCACATGT+TGG | - | chr5.1:2344980-2344999 | None:intergenic | 45.0% | |
AGCCACTTAAAGTCCGAAGT+AGG | - | chr5.1:2346356-2346375 | None:intergenic | 45.0% | |
ATCCCAACAGTCAGCTTATG+CGG | + | chr5.1:2346615-2346634 | MS.gene21904:CDS | 45.0% | |
CATGTCGACATAAGAAACCC+CGG | - | chr5.1:2346967-2346986 | None:intergenic | 45.0% | |
CTCAAGTAGCACAAATGCTC+TGG | - | chr5.1:2345142-2345161 | None:intergenic | 45.0% | |
CTGTCTGTGAACCATCTGTT+GGG | + | chr5.1:2347338-2347357 | MS.gene21904:CDS | 45.0% | |
GAAAAACCAGAGGAAAGGGT+TGG | + | chr5.1:2345022-2345041 | MS.gene21904:CDS | 45.0% | |
GACAACTCGTCAAAAGGAGA+TGG | + | chr5.1:2345318-2345337 | MS.gene21904:CDS | 45.0% | |
GAGGGATAATCATGCTGAGT+TGG | + | chr5.1:2346556-2346575 | MS.gene21904:CDS | 45.0% | |
GATCTTCAAACCTTGGGGAA+AGG | - | chr5.1:2346865-2346884 | None:intergenic | 45.0% | |
TGTCGTATGTTTGAGAACCG+GGG | + | chr5.1:2346947-2346966 | MS.gene21904:CDS | 45.0% | |
TGTCTTCTGCAGCATCAACT+TGG | - | chr5.1:2345420-2345439 | None:intergenic | 45.0% | |
TGTTCTTGAGGCAGGGAAAA+AGG | + | chr5.1:2347237-2347256 | MS.gene21904:CDS | 45.0% | |
TTACAACCAACCCTTTCCTC+TGG | - | chr5.1:2345031-2345050 | None:intergenic | 45.0% | |
TTGATATCGTTGCGCTTCAG+TGG | - | chr5.1:2347140-2347159 | None:intergenic | 45.0% | |
! | GTGAGGTCACATTTTACAGC+TGG | + | chr5.1:2346419-2346438 | MS.gene21904:CDS | 45.0% |
!! | ATTGGTCTTCAGTTTGGGTG+AGG | + | chr5.1:2346402-2346421 | MS.gene21904:CDS | 45.0% |
!! | GAAAGGGTTGGTTGTAAAGC+TGG | + | chr5.1:2345034-2345053 | MS.gene21904:CDS | 45.0% |
!!! | GCCAGTATTTTTTGGGCAGA+TGG | + | chr5.1:2345442-2345461 | MS.gene21904:CDS | 45.0% |
ACCAGCCTGGTCTGTGTATA+TGG | - | chr5.1:2346123-2346142 | None:intergenic | 50.0% | |
ACCATATACACAGACCAGGC+TGG | + | chr5.1:2346119-2346138 | MS.gene21904:CDS | 50.0% | |
AGGGTTGTCACAGTCGACAT+TGG | + | chr5.1:2346902-2346921 | MS.gene21904:CDS | 50.0% | |
GACCGCATAAGCTGACTGTT+GGG | - | chr5.1:2346620-2346639 | None:intergenic | 50.0% | |
GCTGTCTGTGAACCATCTGT+TGG | + | chr5.1:2347337-2347356 | MS.gene21904:CDS | 50.0% | |
GGCCTACTTCGGACTTTAAG+TGG | + | chr5.1:2346351-2346370 | MS.gene21904:CDS | 50.0% | |
GGGTTGTCACAGTCGACATT+GGG | + | chr5.1:2346903-2346922 | MS.gene21904:CDS | 50.0% | |
GGTCTTTGCTCATGGCACAT+GGG | + | chr5.1:2346188-2346207 | MS.gene21904:CDS | 50.0% | |
TACACGTGTTTGCGCAGATG+CGG | + | chr5.1:2347189-2347208 | MS.gene21904:CDS | 50.0% | |
TCAACGGTGTTCTTGAGGCA+GGG | + | chr5.1:2347230-2347249 | MS.gene21904:CDS | 50.0% | |
TGGGTGATCCTATCTTGCCT+TGG | + | chr5.1:2345723-2345742 | MS.gene21904:intron | 50.0% | |
TGGTCTTTGCTCATGGCACA+TGG | + | chr5.1:2346187-2346206 | MS.gene21904:CDS | 50.0% | |
! | TTTGGTGCAGTCCCAACAGA+TGG | - | chr5.1:2347352-2347371 | None:intergenic | 50.0% |
!! | GAAGTGATGGGTCAAGGAGT+TGG | + | chr5.1:2345244-2345263 | MS.gene21904:CDS | 50.0% |
ACTTCAACAACGCACCAGCC+TGG | - | chr5.1:2346136-2346155 | None:intergenic | 55.0% | |
CTCAACGGTGTTCTTGAGGC+AGG | + | chr5.1:2347229-2347248 | MS.gene21904:CDS | 55.0% | |
GGACCGCATAAGCTGACTGT+TGG | - | chr5.1:2346621-2346640 | None:intergenic | 55.0% | |
TGAGGCAGGGAAAAAGGCAG+AGG | + | chr5.1:2347243-2347262 | MS.gene21904:CDS | 55.0% | |
! | CGTCAAAAGGAGATGGTGGC+TGG | + | chr5.1:2345325-2345344 | MS.gene21904:CDS | 55.0% |
!! | GTGATGGGTCAAGGAGTTGG+AGG | + | chr5.1:2345247-2345266 | MS.gene21904:CDS | 55.0% |
ACGTGTTTGCGCAGATGCGG+AGG | + | chr5.1:2347192-2347211 | MS.gene21904:CDS | 60.0% | |
GGGTCAAGGAGTTGGAGGCA+CGG | + | chr5.1:2345252-2345271 | MS.gene21904:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.1 | gene | 2344668 | 2348022 | 2344668 | ID=MS.gene21904 |
chr5.1 | mRNA | 2344668 | 2348022 | 2344668 | ID=MS.gene21904.t1;Parent=MS.gene21904 |
chr5.1 | exon | 2344668 | 2345550 | 2344668 | ID=MS.gene21904.t1.exon1;Parent=MS.gene21904.t1 |
chr5.1 | CDS | 2344668 | 2345550 | 2344668 | ID=cds.MS.gene21904.t1;Parent=MS.gene21904.t1 |
chr5.1 | exon | 2345985 | 2347418 | 2345985 | ID=MS.gene21904.t1.exon2;Parent=MS.gene21904.t1 |
chr5.1 | CDS | 2345985 | 2347418 | 2345985 | ID=cds.MS.gene21904.t1;Parent=MS.gene21904.t1 |
chr5.1 | exon | 2348003 | 2348022 | 2348003 | ID=MS.gene21904.t1.exon3;Parent=MS.gene21904.t1 |
chr5.1 | CDS | 2348003 | 2348022 | 2348003 | ID=cds.MS.gene21904.t1;Parent=MS.gene21904.t1 |
Gene Sequence |
Protein sequence |