AlfalfaGEDB | MS.gene21976

M. sativa cultivar XinJiangDaYe / MS.gene21976

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0097159 GO:1901363
PFAM: PF02362.24

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene21976.t1	AES88798.2	81.1	106	20	0	1	106	147	252	1.40E-43	187.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene21976.t1	G7JTM9	81.1	106	20	0	1	106	147	252	1.0e-43	187.2

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene21976.t1	TF	B3

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene21976.t1	MTR_4g062370	81.132	106	20	0	1	106	147	252	3.58e-53	187
MS.gene21976.t1	MTR_4g032560	48.276	116	60	0	1	116	172	287	3.66e-33	125
MS.gene21976.t1	MTR_4g032560	28.205	234	121	2	176	365	66	296	5.03e-25	103
MS.gene21976.t1	MTR_4g032580	47.414	116	61	0	1	116	172	287	3.36e-32	123
MS.gene21976.t1	MTR_4g032580	28.205	234	121	2	176	365	66	296	5.23e-25	103
MS.gene21976.t1	MTR_1g019580	51.695	118	57	0	1	118	1	118	5.30e-32	117
MS.gene21976.t1	MTR_1g019580	28.302	106	76	0	260	365	20	125	7.82e-12	62.8
MS.gene21976.t1	MTR_1g047540	43.846	130	71	1	1	128	128	257	9.42e-32	125
MS.gene21976.t1	MTR_1g047540	28.767	219	124	3	176	365	37	252	7.80e-20	91.3
MS.gene21976.t1	MTR_1g105780	50.000	118	59	0	1	118	144	261	2.15e-31	120

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 86 sgRNAs with CRISPR-Local

Find 260 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTAAAATTGAAGTTATC+AGG	0.253905	3.3:+41216518	None:intergenic
AACACAATGGTCAAGGCTAG+AGG	0.623217	3.3:-41219520	MS.gene21976:CDS
AACTAAAATTGAAGTTATCA+GGG	0.566319	3.3:+41216519	None:intergenic
AAGGCTAGAGGACTTGAAGC+GGG	0.603437	3.3:-41219508	MS.gene21976:CDS
AAGTTCTGTTGCTCTGAAGT+TGG	0.554304	3.3:-41219626	MS.gene21976:CDS
AATGAACTCAATGTGCTCTA+CGG	0.571963	3.3:-41217895	MS.gene21976:CDS
AATGAGGCTCACTTTAAGAT+AGG	0.480282	3.3:-41219553	MS.gene21976:CDS
ACAACATTGAACAGAGTAAT+AGG	0.238369	3.3:+41219866	None:intergenic
ACCTCTATCTCATTATAAGC+AGG	0.494280	3.3:+41217964	None:intergenic
ACGAACCACACATATCTGCT+TGG	0.522643	3.3:+41218130	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGCATTAACTCTCCATTAT+GGG	+	chr3.3:41217523-41217542	None:intergenic	30.0%
ACAACATTGAACAGAGTAAT+AGG	+	chr3.3:41216156-41216175	None:intergenic	30.0%
ACTACAAAATTGAAGGTGAA+TGG	-	chr3.3:41219791-41219810	MS.gene21976:CDS	30.0%
ACTTCTCCAAAACATGAATA+TGG	+	chr3.3:41219019-41219038	None:intergenic	30.0%
AGAATTACACCCTCAAAATA+TGG	+	chr3.3:41219174-41219193	None:intergenic	30.0%
CAACATTGAACAGAGTAATA+GGG	+	chr3.3:41216155-41216174	None:intergenic	30.0%
CGAAACCGTTCAAATTAATA+TGG	+	chr3.3:41219102-41219121	None:intergenic	30.0%
GTACAGATTCTGTATTATCT+TGG	-	chr3.3:41216346-41216365	MS.gene21976:CDS	30.0%
TAAAAATGTCCCACATTGAA+GGG	-	chr3.3:41218345-41218364	MS.gene21976:intron	30.0%
TAACAAAAAACGAGTGACTT+GGG	+	chr3.3:41218664-41218683	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.3	gene	41216123	41219918	41216123	ID=MS.gene21976
chr3.3	mRNA	41216123	41219918	41216123	ID=MS.gene21976.t1;Parent=MS.gene21976
chr3.3	exon	41219778	41219918	41219778	ID=MS.gene21976.t1.exon1;Parent=MS.gene21976.t1
chr3.3	CDS	41219778	41219918	41219778	ID=cds.MS.gene21976.t1;Parent=MS.gene21976.t1
chr3.3	exon	41219476	41219689	41219476	ID=MS.gene21976.t1.exon2;Parent=MS.gene21976.t1
chr3.3	CDS	41219476	41219689	41219476	ID=cds.MS.gene21976.t1;Parent=MS.gene21976.t1
chr3.3	exon	41219249	41219282	41219249	ID=MS.gene21976.t1.exon3;Parent=MS.gene21976.t1
chr3.3	CDS	41219249	41219282	41219249	ID=cds.MS.gene21976.t1;Parent=MS.gene21976.t1
chr3.3	exon	41218347	41218423	41218347	ID=MS.gene21976.t1.exon4;Parent=MS.gene21976.t1
chr3.3	CDS	41218347	41218423	41218347	ID=cds.MS.gene21976.t1;Parent=MS.gene21976.t1
chr3.3	exon	41218136	41218242	41218136	ID=MS.gene21976.t1.exon5;Parent=MS.gene21976.t1
chr3.3	CDS	41218136	41218242	41218136	ID=cds.MS.gene21976.t1;Parent=MS.gene21976.t1
chr3.3	exon	41217847	41218061	41217847	ID=MS.gene21976.t1.exon6;Parent=MS.gene21976.t1
chr3.3	CDS	41217847	41218061	41217847	ID=cds.MS.gene21976.t1;Parent=MS.gene21976.t1
chr3.3	exon	41216475	41216547	41216475	ID=MS.gene21976.t1.exon7;Parent=MS.gene21976.t1
chr3.3	CDS	41216475	41216547	41216475	ID=cds.MS.gene21976.t1;Parent=MS.gene21976.t1
chr3.3	exon	41216123	41216374	41216123	ID=MS.gene21976.t1.exon8;Parent=MS.gene21976.t1
chr3.3	CDS	41216123	41216374	41216123	ID=cds.MS.gene21976.t1;Parent=MS.gene21976.t1

Gene Sequence

>MS.gene21976

ATGAGGTTTTTGGTTGATAGGAATGCTATCCCTATTACTCTGTTCAATGTTGTGCCTGCTCCATTTGTGCATGACGAGCTTAACTTTCAACACACATACGAGAAGAGGCTTTATTCTGATGAGATGAATGATGGAGTCTTGGTAGATTTAATTGCATAAACAAACAACTTATTATTTTATTTGGTTTTACTGTCTACTAATTTTGTATATGTCATTTTATATTGTACAGATTCTGTATTATCTTGGATTTGCTCAGATGTGTTTGGATACAAGTTCTGTTGCTCTGAAGTTGGTTGATGAGCATGGAAATAGGTGGACATGCACTCTCCAGTTTGTGCCGGGCAATGAGGCTCACTTTAAGATAGGTGGTGGTTGGAACACAATGGTCAAGGCTAGAGGACTTGAAGCGGGTGCAAGTGTTGTTTTTGGAGCCCCTGGAGTTGGTTCAAATGAGACAGTCTATTTTGTTGTAATTCGTTGTTGAATTGTAATTCTTGCTTTTTTGTAATTCTTGCTTTTCATTTTGCTGACAATTATACTGGACAATGCTGCGTTTCTTTTGTTACAGCATTTAGTTTGGCAATTTTAGTTTGATTCGAACAATGTTATGAGATTGAGTGTTCTGACATCTTGCAGTTCCTATGTTGTTCTTTATCTCAATTGTTTTACTGTATGTTAAAGTTAATTTGTCAGTTTTAAAATGGAAGATATATTTTCGAATAATTAAGTTTCTGAAATTTTGTAATCCATTTTCACGTGATATAAACATCATGTTATGTGTAAAATGTAATTGTGTAATCTTCCACAAACGTGCAAATTATATATATCATAGAATCCAGTTGGTTTCTGATACGTTCAACTTATTTATCTCACATAATCTAATTGCACTTTGAAACATTCAAGTAAATCAACACATTTAAAGTGTATTTTTTGATCGGTTATATTCCGTTATATGATCACCGCAATTAACTGAGTCTTGCAACCATGTGGATATGCACTTTTTAATTTGTGTTTTATTACATTGTCTAATCATCATTTCTAATCACCGCAATTTAAAATATGGATATATAGTTCACAATTCTTCCGTTAACAGTCACCGCAATATATTATTAAGTGATTCAGTGGCGTTGCAGATGCTATATATGACAGAAGAAATTAACCATTTATGTATCCCTAAAATTGTTTACACTATCACTTATAATATTTTAAACGCATATAAAATTCAACATGTGCTTTAAATACTTCATCATGAGTTGATTTACATAATTTTCCTTTTTCCCAATGTCTGTTACAATACATTTGTCTTAATGATGACTGTTCATAGGTTCAATGGTCATTAGTAATAAGAACCTTTGATTATTCACGTCCCCCAATCAGTTAATGTTGCGGTATATGTGCCCATAATGGAGAGTTAATGCTTATTAATATTCCCAATGGTATAGTTGTTATGTTATAAAAGGAATTCAAGTGTTTCAATGTTTTATAAGCATTTCAGGGACTTTGCATTTTTACCTCTATCAATGGCTTTCGACATTGTTAAACATACATCATCTGCATTGTACAGTCTAAGAGGTATTTTATATTCATCTTGCATTAATCTTTTTTTGTAATGTTACTGTATACCTTTACTCTCTTTGCAGACTTCCTTATCTTTTTTTTTTTGTTGTTAATCGCAGCTGATGTTGATTGGTTGGGGATACTTGATGATGAGAGTATGTTTGCGATGGCTGGACTGAAATGGCGCACCTTCATCGTTGAGTTTAATCCCAAGCAGATATGTGTGGTTCGTACAATGTTTATTCAGAGACTTATTTGTACTTTTCATCATAAACTTACTATCATGGTTAAATATACTAGGAAAGCGTTATTTTGCCATCATTTTTTATAGATACAATTGGTTCTGAGTTAGGGAGATTTGTGGTGTTGAACGATCCTGCTTATAATGAGATAGAGGTATTGGTTGAGAGAAAGGATGAAGTAGTGTGCTTTTCTCATGGTTGGAATGAACTCAATGTGCTCTACGGCTTGAAGAATGGTGGTGCGGTAACATTGGTTAATGTGCAGCCGTCTCGGTTTGTTATCCAAGTGAGGGATCGTTATGGGGAAGAGATCAATTACCCCCGTCACGTTCCTCCTATGTCTTTTGTTGGAACACTAGTTAATTCTAGTGAAGAAAATTGGAAAGAAAAACACTATAAAAAAACTAGTGTGTGGGTGTGACTTAAAAATGTCCCACATTGAAGGGTCACCCCAACTAGTAAGTGTTTATATATGGGAAAAGTGACCTCCAAGGGTGTGCCCTTGGGGTACCCAATTTTGTGAACGGGTGAATGCTTATTAAAAAAATTGATATATATTTTTGTTACTTGAAAATGTTAAATTAATTAATTAATTAATTTAATCATTATTCGTAAGCGCTACGCGTAACAAATAAATTTGTTATGATCCGACCCGATCCAAAACGCGTATCCAGAAACTTCCGGATATATCCAATTAAGAAACAAAACGCGTTTGCTTAAGGATTAAGCAGACTTAATCCCCAAGTCACTCGTTTTTTGTTACAAACTCTCCCTATAAAAGGAGAGCTTGCCCCATTTGATTCTTTACACCGAAAATTCACAGTCGATGCTTCCTGTGTTTTTTCCTCTCTTCTCCCTCCGACTTGTTTTTAACAAGTTTCTTCTGCTTCTACTCCTTTCTGTCGCTTCGGTATTAAGAGTGTTCTTAAGACCATAGTCCCTTGGTCTTAAGTTCATAGTCCCTTCGATAATATATGATTCTTCGGAATATAGAGTACTATTAAGATCATATTAAAGAATGATCTTAACAGTATATATATATATATTATTTTAAAGAGAAATGGTGGTATCACCATATTTGAGTGGTCGTAGTGCCATATTCATGTTTTGGAGAAGTTAGAATGGTGATAACACCATATTTGAGTGGTCTCAGCACCATAATAGAATGGTAATAATACCATATTAATTTGAACGGTTTCGAATAGAGCGGTTACGTACCGTATCGAGTGGCTTCGATCAAACGATTGAGCCATATTTTGAGGGTGTAATTCTCGAACGATTTTTCTACAGTGCAGTAGTTAATCGAACAGTTGTAGCTGGGCTTGTTTTATCCTGGAGGCGGCGTGGTTGATAGTCTACCTTGCACAACTTTGGGTAGTGCCACGAAACGTCTTAAAGAGAGCGACCTGGTCGTGACTCAACCTAGTAACAACTTCGGTAGATGATAGAATTTTGGAAATTCAAATTTAACAGTTTGGAAATCCAAAAAACAACATCTTTTAAGTTAAATCATGAAAAATTTCCAGTTGGTGTACCAGCCTTATTCACTGCCAAACGAATTATCCCTTATAGGCATCACCCTGATAACTTCAATTTTAGTTTCTCCAAATGGTTAAGTGTTGACGAGGCAGCAAAAGGTTATCTGGTACGAACCACAGCCCTTTTTTAACTTCTGATATATTTCAAATGTATACGTTAATGTGCATATAAATGTCACTAACAAATTGTTTTTCTTTTTTTTACAGACACTTTCATATGACCCTGTTTTGGAATCTGTTATGCCAATAAATACCAAGGACTTCTATTTGACAGATGACACGGGCCACGTCTGGCGTTGCACCCATGCTTTTGTTCGTTCCAAAGAACCGCACTACAAAATTGAAGGTGAATGGAAGCAATTCTGTTTAAGCCGCAATGTGATTGCGGGGTCATTCATCAGAATCGGTGCACCGAGTGTTGGAGCTAATATTTCGTTTTATGTCACCTTGCAATTTTAG

Protein sequence

>MS.gene21976.t1

MRFLVDRNAIPITLFNVVPAPFVHDELNFQHTYEKRLYSDEMNDGVLILYYLGFAQMCLDTSSVALKLVDEHGNRWTCTLQFVPGNEAHFKIGGGWNTMVKARGLEAGASVVFGAPGVVPMLFFISIVLLDFAFLPLSMAFDIVKHTSSALYSLRADVDWLGILDDESMFAMAGLKWRTFIVEFNPKQICVESVILPSFFIDTIGSELGRFVVLNDPAYNEIEVLVERKDEVVCFSHGWNELNVLYGLKNGGAVTLVNVQPSRHHPDNFNFSFSKWLSVDEAAKGYLTLSYDPVLESVMPINTKDFYLTDDTGHVWRCTHAFVRSKEPHYKIEGEWKQFCLSRNVIAGSFIRIGAPSVGANISFYVTLQF