Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21983.t1 | XP_003600003.2 | 82.5 | 234 | 28 | 2 | 12 | 241 | 3 | 227 | 3.50E-112 | 414.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21983.t1 | Q9LT81 | 37.0 | 284 | 101 | 8 | 32 | 241 | 93 | 372 | 6.5e-43 | 175.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21983.t1 | G7J1X0 | 82.5 | 234 | 28 | 2 | 12 | 241 | 3 | 227 | 2.5e-112 | 414.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene21983.t1 | TF | C3H |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21983.t1 | MTR_3g050390 | 81.780 | 236 | 30 | 2 | 10 | 241 | 1 | 227 | 1.05e-140 | 394 |
| MS.gene21983.t1 | MTR_4g113860 | 52.326 | 258 | 89 | 7 | 16 | 241 | 51 | 306 | 1.36e-78 | 239 |
| MS.gene21983.t1 | MTR_4g113970 | 56.398 | 211 | 66 | 6 | 16 | 201 | 44 | 253 | 2.25e-71 | 219 |
| MS.gene21983.t1 | MTR_4g113940 | 46.545 | 275 | 107 | 8 | 1 | 241 | 1 | 269 | 1.46e-70 | 217 |
| MS.gene21983.t1 | MTR_4g113890 | 41.544 | 272 | 86 | 8 | 1 | 241 | 1 | 230 | 1.57e-50 | 165 |
| MS.gene21983.t1 | MTR_8g066730 | 27.148 | 291 | 123 | 7 | 37 | 241 | 86 | 373 | 1.31e-25 | 103 |
| MS.gene21983.t1 | MTR_8g066730 | 31.500 | 200 | 91 | 4 | 37 | 193 | 86 | 282 | 3.35e-25 | 100 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21983.t1 | AT3G19360 | 36.972 | 284 | 101 | 8 | 32 | 241 | 93 | 372 | 3.25e-49 | 166 |
| MS.gene21983.t1 | AT3G19360 | 36.972 | 284 | 101 | 8 | 32 | 241 | 93 | 372 | 3.25e-49 | 166 |
| MS.gene21983.t1 | AT1G32360 | 27.393 | 303 | 116 | 9 | 37 | 241 | 85 | 381 | 5.31e-23 | 96.3 |
Find 75 sgRNAs with CRISPR-Local
Find 139 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGAGGAATGGATGCAGTTTC+TGG | 0.186612 | 3.3:+41130794 | MS.gene21983:CDS |
| ATTCTTGCCCTCTTGTTCTT+TGG | 0.226992 | 3.3:-41130570 | None:intergenic |
| CGGAGATGGTTCTAATAGTT+TGG | 0.293400 | 3.3:+41130971 | MS.gene21983:CDS |
| ATAGACTTAGGGATGATTCT+TGG | 0.310304 | 3.3:+41130910 | MS.gene21983:CDS |
| TTTGCCACACTTAGACTTGC+TGG | 0.314187 | 3.3:-41132246 | None:intergenic |
| AAACAGGGCGTTGTCCCTTT+GGG | 0.321190 | 3.3:+41131066 | MS.gene21983:CDS |
| CTCGTATTTGTCATAAGTTC+AGG | 0.326388 | 3.3:+41130670 | MS.gene21983:CDS |
| TTACAGTAAGTGCCCCTTGC+TGG | 0.339223 | 3.3:-41131017 | None:intergenic |
| CAAACAGGGCGTTGTCCCTT+TGG | 0.358171 | 3.3:+41131065 | MS.gene21983:CDS |
| TAAGGAAGCCACCGCCGAAT+TGG | 0.369861 | 3.3:+41130748 | MS.gene21983:CDS |
| ATGATATCGCTGCGGTGGTC+TGG | 0.379608 | 3.3:-41130543 | None:intergenic |
| TCGCCTGTTTCTTTGTTTGA+TGG | 0.390448 | 3.3:-41130633 | None:intergenic |
| TTAATACAATATATGCTGAT+TGG | 0.400917 | 3.3:+41132325 | MS.gene21983:CDS |
| AGACTTGCTGGGATGCTTGT+AGG | 0.406856 | 3.3:-41132234 | None:intergenic |
| TGTCCCATGTGGAAGCAAAC+AGG | 0.413714 | 3.3:+41131050 | MS.gene21983:CDS |
| TTTGGGGAGGACTGTCACTA+TGG | 0.414198 | 3.3:+41131083 | MS.gene21983:CDS |
| CTAATAGTTTGGAAGGCAAC+AGG | 0.423700 | 3.3:+41130982 | MS.gene21983:CDS |
| CCAGCTAGCACCTTCCAATT+CGG | 0.426960 | 3.3:-41130762 | None:intergenic |
| AGAAGAAGCCTTTACTTTGG+TGG | 0.434420 | 3.3:+41132286 | MS.gene21983:CDS |
| ATTTGTCATAAGTTCAGGTT+TGG | 0.439137 | 3.3:+41130675 | MS.gene21983:CDS |
| TTTAATTTCCACCAAAGTAA+AGG | 0.443077 | 3.3:-41132294 | None:intergenic |
| CTTCCATCAAACAAAGAAAC+AGG | 0.444809 | 3.3:+41130630 | MS.gene21983:CDS |
| TTGCCACACTTAGACTTGCT+GGG | 0.445723 | 3.3:-41132245 | None:intergenic |
| AATGGTGAGGAATGTCCTTA+TGG | 0.454214 | 3.3:+41130867 | MS.gene21983:CDS |
| GTTTCTTTGTTTGATGGAAG+AGG | 0.456265 | 3.3:-41130627 | None:intergenic |
| CACTATGGTCATGGAGAAGC+AGG | 0.459706 | 3.3:+41131098 | MS.gene21983:CDS |
| CAGAAAATCATTCACAAGAT+GGG | 0.463529 | 3.3:+41130825 | MS.gene21983:CDS |
| TGTGGCAAAGGAAGAGGAGC+AGG | 0.471280 | 3.3:+41132260 | MS.gene21983:CDS |
| AGCACCTTCCAATTCGGCGG+TGG | 0.473982 | 3.3:-41130756 | None:intergenic |
| CTGGCTCTCGCAACGAGGAA+TGG | 0.475242 | 3.3:+41130781 | MS.gene21983:CDS |
| TCAGAAAATCATTCACAAGA+TGG | 0.481007 | 3.3:+41130824 | MS.gene21983:CDS |
| CTCACGGGGTTGGTGAGATA+AGG | 0.482058 | 3.3:+41130730 | MS.gene21983:CDS |
| CCGAATTGGAAGGTGCTAGC+TGG | 0.485538 | 3.3:+41130762 | MS.gene21983:CDS |
| CTAAGAAGAAGCCTTTACTT+TGG | 0.486095 | 3.3:+41132283 | MS.gene21983:CDS |
| TTTCTTTGTTTGATGGAAGA+GGG | 0.487321 | 3.3:-41130626 | None:intergenic |
| GATGCTTGTAGGTGCATCAT+TGG | 0.488672 | 3.3:-41132223 | None:intergenic |
| TAGGTACAATGTTCACCTTT+CGG | 0.492110 | 3.3:-41130705 | None:intergenic |
| AAACAACACTTATCACCATA+AGG | 0.495083 | 3.3:-41130882 | None:intergenic |
| CGCCCTGTTTGCTTCCACAT+GGG | 0.499410 | 3.3:-41131053 | None:intergenic |
| ACTTCCAATGTTTAATGCAC+AGG | 0.503756 | 3.3:-41130946 | None:intergenic |
| AACATTGTACCTATGCTCAC+GGG | 0.508915 | 3.3:+41130715 | MS.gene21983:CDS |
| TCTAAGTGTGGCAAAGGAAG+AGG | 0.514887 | 3.3:+41132254 | MS.gene21983:CDS |
| GTCTGTGAACAAGCCAGCAA+GGG | 0.530594 | 3.3:+41131004 | MS.gene21983:CDS |
| GATGGTTCTAATAGTTTGGA+AGG | 0.532918 | 3.3:+41130975 | MS.gene21983:CDS |
| AACAGGGCGTTGTCCCTTTG+GGG | 0.544556 | 3.3:+41131067 | MS.gene21983:CDS |
| GGTCTGTGAACAAGCCAGCA+AGG | 0.544982 | 3.3:+41131003 | MS.gene21983:CDS |
| TGTACCTATGCTCACGGGGT+TGG | 0.546278 | 3.3:+41130720 | MS.gene21983:CDS |
| TAGTGACAGTCCTCCCCAAA+GGG | 0.553368 | 3.3:-41131080 | None:intergenic |
| GCATTAAACATTGGAAGTAT+CGG | 0.556102 | 3.3:+41130951 | MS.gene21983:CDS |
| AGCAAGTCTAAGTGTGGCAA+AGG | 0.556244 | 3.3:+41132248 | MS.gene21983:CDS |
| GAGGACTGTCACTATGGTCA+TGG | 0.559170 | 3.3:+41131089 | MS.gene21983:CDS |
| AGGTTTGGTAATTGTCCGAA+AGG | 0.564006 | 3.3:+41130690 | MS.gene21983:CDS |
| ACGCCCTGTTTGCTTCCACA+TGG | 0.564079 | 3.3:-41131054 | None:intergenic |
| AACATTGGAAGTATCGGAGA+TGG | 0.569972 | 3.3:+41130957 | MS.gene21983:CDS |
| GAACATTGTACCTATGCTCA+CGG | 0.579167 | 3.3:+41130714 | MS.gene21983:CDS |
| GAAGCCACCGCCGAATTGGA+AGG | 0.590951 | 3.3:+41130752 | MS.gene21983:CDS |
| TCATGTTTCCAAAGAACAAG+AGG | 0.592600 | 3.3:+41130562 | MS.gene21983:CDS |
| GTCCCATGTGGAAGCAAACA+GGG | 0.595288 | 3.3:+41131051 | MS.gene21983:CDS |
| AGAAAATCATTCACAAGATG+GGG | 0.602501 | 3.3:+41130826 | MS.gene21983:CDS |
| GAGGCCTGTGCATTAAACAT+TGG | 0.604839 | 3.3:+41130942 | MS.gene21983:CDS |
| CTCACCAACCCCGTGAGCAT+AGG | 0.617079 | 3.3:-41130724 | None:intergenic |
| AGGGCGTTGTCCCTTTGGGG+AGG | 0.622418 | 3.3:+41131070 | MS.gene21983:CDS |
| GAAACATGATATCGCTGCGG+TGG | 0.632928 | 3.3:-41130548 | None:intergenic |
| GCTAGCACCTTCCAATTCGG+CGG | 0.643744 | 3.3:-41130759 | None:intergenic |
| ATAGTGACAGTCCTCCCCAA+AGG | 0.646765 | 3.3:-41131081 | None:intergenic |
| CATGTTTCCAAAGAACAAGA+GGG | 0.650159 | 3.3:+41130563 | MS.gene21983:CDS |
| TCTGTGAACAAGCCAGCAAG+GGG | 0.662860 | 3.3:+41131005 | MS.gene21983:CDS |
| CATCCCAGCAAGTCTAAGTG+TGG | 0.664369 | 3.3:+41132242 | MS.gene21983:CDS |
| CAAGAAATACTACAATGGTG+AGG | 0.666991 | 3.3:+41130854 | MS.gene21983:CDS |
| CTATGCAAGAAATACTACAA+TGG | 0.669884 | 3.3:+41130849 | MS.gene21983:CDS |
| TGATTCTTGGAAATCAAGAG+AGG | 0.676002 | 3.3:+41130923 | MS.gene21983:CDS |
| ACATTGTACCTATGCTCACG+GGG | 0.692970 | 3.3:+41130716 | MS.gene21983:CDS |
| TTGGAAACATGATATCGCTG+CGG | 0.712741 | 3.3:-41130551 | None:intergenic |
| AGACTAAGCTGTGTCCCATG+TGG | 0.715051 | 3.3:+41131039 | MS.gene21983:CDS |
| GCTAGCTGGCTCTCGCAACG+AGG | 0.720200 | 3.3:+41130776 | MS.gene21983:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACAATATTTTATACTAGATA+GGG | + | chr3.3:41131777-41131796 | MS.gene21983:intron | 15.0% |
| !! | TATAAAATATTGTGAAACAG+CGG | - | chr3.3:41131770-41131789 | None:intergenic | 20.0% |
| !! | TTAATACAATATATGCTGAT+TGG | + | chr3.3:41132325-41132344 | MS.gene21983:CDS | 20.0% |
| !! | TTATAACAATCAAATCTGTT+TGG | + | chr3.3:41132140-41132159 | MS.gene21983:intron | 20.0% |
| !!! | CACAATATTTTATACTAGAT+AGG | + | chr3.3:41131776-41131795 | MS.gene21983:intron | 20.0% |
| ! | TAACAATAGTATGTAAACCT+CGG | - | chr3.3:41131680-41131699 | None:intergenic | 25.0% |
| ! | TACTTGCTTATAGTTAAAGT+TGG | + | chr3.3:41131374-41131393 | MS.gene21983:intron | 25.0% |
| ! | TGAATGAACAAAATACCAAA+TGG | - | chr3.3:41131410-41131429 | None:intergenic | 25.0% |
| ! | TTATACTAGATAGGGTATAA+TGG | + | chr3.3:41131785-41131804 | MS.gene21983:intron | 25.0% |
| !! | TTGTTTTCTTCATAGACTTA+GGG | + | chr3.3:41130899-41130918 | MS.gene21983:CDS | 25.0% |
| !! | TTTAATTTCCACCAAAGTAA+AGG | - | chr3.3:41132297-41132316 | None:intergenic | 25.0% |
| AAACAACACTTATCACCATA+AGG | - | chr3.3:41130885-41130904 | None:intergenic | 30.0% | |
| AGAAAATCATTCACAAGATG+GGG | + | chr3.3:41130826-41130845 | MS.gene21983:CDS | 30.0% | |
| AGGTAGCTGATCATATTAAA+TGG | + | chr3.3:41131339-41131358 | MS.gene21983:intron | 30.0% | |
| CAGAAAATCATTCACAAGAT+GGG | + | chr3.3:41130825-41130844 | MS.gene21983:CDS | 30.0% | |
| CTATGCAAGAAATACTACAA+TGG | + | chr3.3:41130849-41130868 | MS.gene21983:CDS | 30.0% | |
| CTATTGTTAATTGTAGATCG+CGG | + | chr3.3:41131691-41131710 | MS.gene21983:intron | 30.0% | |
| GGTAATGATAATACTGGTAT+TGG | + | chr3.3:41131119-41131138 | MS.gene21983:intron | 30.0% | |
| TCAGAAAATCATTCACAAGA+TGG | + | chr3.3:41130824-41130843 | MS.gene21983:CDS | 30.0% | |
| TGAGTAATCATACATACAAG+TGG | - | chr3.3:41131464-41131483 | None:intergenic | 30.0% | |
| TTATAGTGTTTGATTGTGTG+TGG | + | chr3.3:41131256-41131275 | MS.gene21983:intron | 30.0% | |
| ! | ATTTGTCATAAGTTCAGGTT+TGG | + | chr3.3:41130675-41130694 | MS.gene21983:CDS | 30.0% |
| ! | GCATTAAACATTGGAAGTAT+CGG | + | chr3.3:41130951-41130970 | MS.gene21983:CDS | 30.0% |
| ! | GTAATTCTACAGTTCTGTTT+TGG | + | chr3.3:41131153-41131172 | MS.gene21983:intron | 30.0% |
| ! | GTGTGTCATATTTTCATGTT+TGG | + | chr3.3:41131290-41131309 | MS.gene21983:intron | 30.0% |
| ! | TTTCTTTGTTTGATGGAAGA+GGG | - | chr3.3:41130629-41130648 | None:intergenic | 30.0% |
| !! | GTTGTTTTCTTCATAGACTT+AGG | + | chr3.3:41130898-41130917 | MS.gene21983:CDS | 30.0% |
| AAAAACCAAGAGGAGAAACA+GGG | - | chr3.3:41131849-41131868 | None:intergenic | 35.0% | |
| AAAAATCTGGCATACAAGCA+TGG | - | chr3.3:41131610-41131629 | None:intergenic | 35.0% | |
| AAGAGTCAGAAGAAGATACA+AGG | - | chr3.3:41132169-41132188 | None:intergenic | 35.0% | |
| AATCATCAGCAAAAACCAAG+AGG | - | chr3.3:41131859-41131878 | None:intergenic | 35.0% | |
| ACTTCCAATGTTTAATGCAC+AGG | - | chr3.3:41130949-41130968 | None:intergenic | 35.0% | |
| ATAATAGCCATTGTAGCCTA+TGG | - | chr3.3:41131557-41131576 | None:intergenic | 35.0% | |
| ATAGACTTAGGGATGATTCT+TGG | + | chr3.3:41130910-41130929 | MS.gene21983:CDS | 35.0% | |
| ATATGATCAGCTACCTTAAG+AGG | - | chr3.3:41131335-41131354 | None:intergenic | 35.0% | |
| CAAGAAATACTACAATGGTG+AGG | + | chr3.3:41130854-41130873 | MS.gene21983:CDS | 35.0% | |
| CATGTTTCCAAAGAACAAGA+GGG | + | chr3.3:41130563-41130582 | MS.gene21983:CDS | 35.0% | |
| CTAAGAAGAAGCCTTTACTT+TGG | + | chr3.3:41132283-41132302 | MS.gene21983:CDS | 35.0% | |
| CTCGTATTTGTCATAAGTTC+AGG | + | chr3.3:41130670-41130689 | MS.gene21983:CDS | 35.0% | |
| CTTCCATCAAACAAAGAAAC+AGG | + | chr3.3:41130630-41130649 | MS.gene21983:CDS | 35.0% | |
| GAAGCAGGTAATGATAATAC+TGG | + | chr3.3:41131113-41131132 | MS.gene21983:intron | 35.0% | |
| GCAATATAATTGTTGTGCAG+CGG | - | chr3.3:41131739-41131758 | None:intergenic | 35.0% | |
| TAGAGCAGTGTTATCATAAG+TGG | - | chr3.3:41131656-41131675 | None:intergenic | 35.0% | |
| TAGGTACAATGTTCACCTTT+CGG | - | chr3.3:41130708-41130727 | None:intergenic | 35.0% | |
| TATGATCAGCTACCTTAAGA+GGG | - | chr3.3:41131334-41131353 | None:intergenic | 35.0% | |
| TATGTTTGACTGCAACGTTA+CGG | - | chr3.3:41131963-41131982 | None:intergenic | 35.0% | |
| TCATGTTTCCAAAGAACAAG+AGG | + | chr3.3:41130562-41130581 | MS.gene21983:CDS | 35.0% | |
| TGATTCTTGGAAATCAAGAG+AGG | + | chr3.3:41130923-41130942 | MS.gene21983:CDS | 35.0% | |
| TGTCTGACTCATCAATAAGT+TGG | + | chr3.3:41131890-41131909 | MS.gene21983:intron | 35.0% | |
| TGTTATCATAAGTGGAAGGA+AGG | - | chr3.3:41131648-41131667 | None:intergenic | 35.0% | |
| ! | ATGCTTGTATGCCAGATTTT+TGG | + | chr3.3:41131609-41131628 | MS.gene21983:intron | 35.0% |
| ! | GTTTCTTTGTTTGATGGAAG+AGG | - | chr3.3:41130630-41130649 | None:intergenic | 35.0% |
| !! | GATGGTTCTAATAGTTTGGA+AGG | + | chr3.3:41130975-41130994 | MS.gene21983:CDS | 35.0% |
| !! | GTTGGTTCTGAATAACCATT+TGG | + | chr3.3:41131392-41131411 | MS.gene21983:intron | 35.0% |
| AACATTGTACCTATGCTCAC+GGG | + | chr3.3:41130715-41130734 | MS.gene21983:CDS | 40.0% | |
| AACATTTGCAACCACGATTG+TGG | - | chr3.3:41132040-41132059 | None:intergenic | 40.0% | |
| AATGGTGAGGAATGTCCTTA+TGG | + | chr3.3:41130867-41130886 | MS.gene21983:CDS | 40.0% | |
| ACATAAACTTGCCCCTCTTA+AGG | + | chr3.3:41131319-41131338 | MS.gene21983:intron | 40.0% | |
| ACCAAATGTCTTGCCAGTTT+CGG | + | chr3.3:41132200-41132219 | MS.gene21983:intron | 40.0% | |
| AGAAGAAGCCTTTACTTTGG+TGG | + | chr3.3:41132286-41132305 | MS.gene21983:CDS | 40.0% | |
| ATGATCAGCTACCTTAAGAG+GGG | - | chr3.3:41131333-41131352 | None:intergenic | 40.0% | |
| ATTCTTGCCCTCTTGTTCTT+TGG | - | chr3.3:41130573-41130592 | None:intergenic | 40.0% | |
| CAAAAACCAAGAGGAGAAAC+AGG | - | chr3.3:41131850-41131869 | None:intergenic | 40.0% | |
| CTAATAGTTTGGAAGGCAAC+AGG | + | chr3.3:41130982-41131001 | MS.gene21983:CDS | 40.0% | |
| GAACATTGTACCTATGCTCA+CGG | + | chr3.3:41130714-41130733 | MS.gene21983:CDS | 40.0% | |
| GAGGTACATTTCTCATTGCA+AGG | + | chr3.3:41131912-41131931 | MS.gene21983:intron | 40.0% | |
| GCAGTGTTATCATAAGTGGA+AGG | - | chr3.3:41131652-41131671 | None:intergenic | 40.0% | |
| TAATGCAACTGCAGTTGTGA+TGG | + | chr3.3:41131985-41132004 | MS.gene21983:intron | 40.0% | |
| TTGGAAACATGATATCGCTG+CGG | - | chr3.3:41130554-41130573 | None:intergenic | 40.0% | |
| ! | AGGTTTGGTAATTGTCCGAA+AGG | + | chr3.3:41130690-41130709 | MS.gene21983:CDS | 40.0% |
| ! | CTGACTCATCAATAAGTTGG+AGG | + | chr3.3:41131893-41131912 | MS.gene21983:intron | 40.0% |
| ! | TCGCCTGTTTCTTTGTTTGA+TGG | - | chr3.3:41130636-41130655 | None:intergenic | 40.0% |
| !! | AACATTGGAAGTATCGGAGA+TGG | + | chr3.3:41130957-41130976 | MS.gene21983:CDS | 40.0% |
| !! | CGGAGATGGTTCTAATAGTT+TGG | + | chr3.3:41130971-41130990 | MS.gene21983:CDS | 40.0% |
| !! | TAACGTTTTAGCCACAATCG+TGG | + | chr3.3:41132026-41132045 | MS.gene21983:intron | 40.0% |
| ACATTGTACCTATGCTCACG+GGG | + | chr3.3:41130716-41130735 | MS.gene21983:CDS | 45.0% | |
| AGCAAGTCTAAGTGTGGCAA+AGG | + | chr3.3:41132248-41132267 | MS.gene21983:CDS | 45.0% | |
| ATAGCCATTGTAGCCTATGG+CGG | - | chr3.3:41131554-41131573 | None:intergenic | 45.0% | |
| ATGGCAGCTAGCCAAAAATC+TGG | - | chr3.3:41131623-41131642 | None:intergenic | 45.0% | |
| CATAAGTGGAAGGAAGGCTA+TGG | - | chr3.3:41131642-41131661 | None:intergenic | 45.0% | |
| GAGGCCTGTGCATTAAACAT+TGG | + | chr3.3:41130942-41130961 | MS.gene21983:CDS | 45.0% | |
| GATGCTTGTAGGTGCATCAT+TGG | - | chr3.3:41132226-41132245 | None:intergenic | 45.0% | |
| GTTATCACACGAAAACGAGC+AGG | - | chr3.3:41132073-41132092 | None:intergenic | 45.0% | |
| TCTAAGTGTGGCAAAGGAAG+AGG | + | chr3.3:41132254-41132273 | MS.gene21983:CDS | 45.0% | |
| TGATAACACTGCTCTATCCG+AGG | + | chr3.3:41131660-41131679 | MS.gene21983:intron | 45.0% | |
| TTTGCCACACTTAGACTTGC+TGG | - | chr3.3:41132249-41132268 | None:intergenic | 45.0% | |
| ! | ATCCAGCATGTTTCTGCCAT+AGG | + | chr3.3:41131577-41131596 | MS.gene21983:intron | 45.0% |
| ! | TTGCCACACTTAGACTTGCT+GGG | - | chr3.3:41132248-41132267 | None:intergenic | 45.0% |
| AACCAAGAGGAGAAACAGGG+TGG | - | chr3.3:41131846-41131865 | None:intergenic | 50.0% | |
| AGACTAAGCTGTGTCCCATG+TGG | + | chr3.3:41131039-41131058 | MS.gene21983:CDS | 50.0% | |
| ATAACTGCACCAAGGCATGG+AGG | + | chr3.3:41131516-41131535 | MS.gene21983:intron | 50.0% | |
| ATAGTGACAGTCCTCCCCAA+AGG | - | chr3.3:41131084-41131103 | None:intergenic | 50.0% | |
| CACTATGGTCATGGAGAAGC+AGG | + | chr3.3:41131098-41131117 | MS.gene21983:CDS | 50.0% | |
| CATCCCAGCAAGTCTAAGTG+TGG | + | chr3.3:41132242-41132261 | MS.gene21983:CDS | 50.0% | |
| CCAGCTAGCACCTTCCAATT+CGG | - | chr3.3:41130765-41130784 | None:intergenic | 50.0% | |
| CGAGGAATGGATGCAGTTTC+TGG | + | chr3.3:41130794-41130813 | MS.gene21983:CDS | 50.0% | |
| GAAACATGATATCGCTGCGG+TGG | - | chr3.3:41130551-41130570 | None:intergenic | 50.0% | |
| GAGGACTGTCACTATGGTCA+TGG | + | chr3.3:41131089-41131108 | MS.gene21983:CDS | 50.0% | |
| GCCGAAACTGGCAAGACATT+TGG | - | chr3.3:41132204-41132223 | None:intergenic | 50.0% | |
| GTCCCATGTGGAAGCAAACA+GGG | + | chr3.3:41131051-41131070 | MS.gene21983:CDS | 50.0% | |
| GTCTGTGAACAAGCCAGCAA+GGG | + | chr3.3:41131004-41131023 | MS.gene21983:CDS | 50.0% | |
| TAGTGACAGTCCTCCCCAAA+GGG | - | chr3.3:41131083-41131102 | None:intergenic | 50.0% | |
| TCTGTGAACAAGCCAGCAAG+GGG | + | chr3.3:41131005-41131024 | MS.gene21983:CDS | 50.0% | |
| TGCAACTGCAGTTGTGATGG+CGG | + | chr3.3:41131988-41132007 | MS.gene21983:intron | 50.0% | |
| TGTCCCATGTGGAAGCAAAC+AGG | + | chr3.3:41131050-41131069 | MS.gene21983:CDS | 50.0% | |
| TTACAGTAAGTGCCCCTTGC+TGG | - | chr3.3:41131020-41131039 | None:intergenic | 50.0% | |
| TTGTCGCCATAACTGCACCA+AGG | + | chr3.3:41131508-41131527 | MS.gene21983:intron | 50.0% | |
| TTTGGGGAGGACTGTCACTA+TGG | + | chr3.3:41131083-41131102 | MS.gene21983:CDS | 50.0% | |
| ! | TCCATGCCTTGGTGCAGTTA+TGG | - | chr3.3:41131517-41131536 | None:intergenic | 50.0% |
| ! | TGGCATACAAGCATGGACTG+TGG | - | chr3.3:41131603-41131622 | None:intergenic | 50.0% |
| ! | TTCCACCCTGTTTCTCCTCT+TGG | + | chr3.3:41131841-41131860 | MS.gene21983:intron | 50.0% |
| !! | AAACAGGGCGTTGTCCCTTT+GGG | + | chr3.3:41131066-41131085 | MS.gene21983:CDS | 50.0% |
| !! | AGACTTGCTGGGATGCTTGT+AGG | - | chr3.3:41132237-41132256 | None:intergenic | 50.0% |
| ACGCCCTGTTTGCTTCCACA+TGG | - | chr3.3:41131057-41131076 | None:intergenic | 55.0% | |
| ATGATATCGCTGCGGTGGTC+TGG | - | chr3.3:41130546-41130565 | None:intergenic | 55.0% | |
| CGCCCTGTTTGCTTCCACAT+GGG | - | chr3.3:41131056-41131075 | None:intergenic | 55.0% | |
| GCACAACATCCTCCATGCCT+TGG | - | chr3.3:41131528-41131547 | None:intergenic | 55.0% | |
| GCCATAACTGCACCAAGGCA+TGG | + | chr3.3:41131513-41131532 | MS.gene21983:intron | 55.0% | |
| GCTAGCACCTTCCAATTCGG+CGG | - | chr3.3:41130762-41130781 | None:intergenic | 55.0% | |
| GGCCTATGGCAGAAACATGC+TGG | - | chr3.3:41131582-41131601 | None:intergenic | 55.0% | |
| GGTCTGTGAACAAGCCAGCA+AGG | + | chr3.3:41131003-41131022 | MS.gene21983:CDS | 55.0% | |
| GGTGCATCATTGGCCGAAAC+TGG | - | chr3.3:41132216-41132235 | None:intergenic | 55.0% | |
| TAAGGAAGCCACCGCCGAAT+TGG | + | chr3.3:41130748-41130767 | MS.gene21983:CDS | 55.0% | |
| TGTACCTATGCTCACGGGGT+TGG | + | chr3.3:41130720-41130739 | MS.gene21983:CDS | 55.0% | |
| TGTGGCAAAGGAAGAGGAGC+AGG | + | chr3.3:41132260-41132279 | MS.gene21983:CDS | 55.0% | |
| ! | CAAGCATGGACTGTGGCCTA+TGG | - | chr3.3:41131596-41131615 | None:intergenic | 55.0% |
| !! | AACAGGGCGTTGTCCCTTTG+GGG | + | chr3.3:41131067-41131086 | MS.gene21983:CDS | 55.0% |
| !! | CAAACAGGGCGTTGTCCCTT+TGG | + | chr3.3:41131065-41131084 | MS.gene21983:CDS | 55.0% |
| !! | CCGAATTGGAAGGTGCTAGC+TGG | + | chr3.3:41130762-41130781 | MS.gene21983:CDS | 55.0% |
| !! | CTCACGGGGTTGGTGAGATA+AGG | + | chr3.3:41130730-41130749 | MS.gene21983:CDS | 55.0% |
| AGCACCTTCCAATTCGGCGG+TGG | - | chr3.3:41130759-41130778 | None:intergenic | 60.0% | |
| CCAGCCGCCATAGGCTACAA+TGG | + | chr3.3:41131547-41131566 | MS.gene21983:intron | 60.0% | |
| CCATTGTAGCCTATGGCGGC+TGG | - | chr3.3:41131550-41131569 | None:intergenic | 60.0% | |
| CTCACCAACCCCGTGAGCAT+AGG | - | chr3.3:41130727-41130746 | None:intergenic | 60.0% | |
| GAAGCCACCGCCGAATTGGA+AGG | + | chr3.3:41130752-41130771 | MS.gene21983:CDS | 60.0% | |
| GATGTTGTGCCAGCCGCCAT+AGG | + | chr3.3:41131538-41131557 | MS.gene21983:intron | 60.0% | |
| ! | CTGGCTCTCGCAACGAGGAA+TGG | + | chr3.3:41130781-41130800 | MS.gene21983:CDS | 60.0% |
| ! | GCTAGCTGGCTCTCGCAACG+AGG | + | chr3.3:41130776-41130795 | MS.gene21983:CDS | 65.0% |
| !! | AGGGCGTTGTCCCTTTGGGG+AGG | + | chr3.3:41131070-41131089 | MS.gene21983:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 41130534 | 41132359 | 41130534 | ID=MS.gene21983 |
| chr3.3 | mRNA | 41130534 | 41132359 | 41130534 | ID=MS.gene21983.t1;Parent=MS.gene21983 |
| chr3.3 | exon | 41130534 | 41131119 | 41130534 | ID=MS.gene21983.t1.exon1;Parent=MS.gene21983.t1 |
| chr3.3 | CDS | 41130534 | 41131119 | 41130534 | ID=cds.MS.gene21983.t1;Parent=MS.gene21983.t1 |
| chr3.3 | exon | 41132217 | 41132359 | 41132217 | ID=MS.gene21983.t1.exon2;Parent=MS.gene21983.t1 |
| chr3.3 | CDS | 41132217 | 41132359 | 41132217 | ID=cds.MS.gene21983.t1;Parent=MS.gene21983.t1 |
| Gene Sequence |
| Protein sequence |
