Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22002.t1 | XP_003613438.2 | 93.3 | 105 | 7 | 0 | 47 | 151 | 28 | 132 | 2.40E-47 | 198.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22002.t1 | O04539 | 76.3 | 97 | 22 | 1 | 56 | 151 | 8 | 104 | 3.5e-34 | 146.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22002.t1 | G7K6W4 | 93.3 | 105 | 7 | 0 | 47 | 151 | 28 | 132 | 1.8e-47 | 198.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene22002.t1 | TR | Others |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22002.t1 | MTR_5g036670 | 93.333 | 105 | 7 | 0 | 47 | 151 | 28 | 132 | 3.04e-61 | 203 |
| MS.gene22002.t1 | MTR_8g062700 | 66.957 | 115 | 37 | 1 | 38 | 151 | 17 | 131 | 3.64e-44 | 154 |
| MS.gene22002.t1 | MTR_8g062700 | 66.957 | 115 | 37 | 1 | 38 | 151 | 17 | 131 | 3.93e-44 | 154 |
| MS.gene22002.t1 | MTR_6g008970 | 69.072 | 97 | 30 | 0 | 55 | 151 | 56 | 152 | 6.97e-39 | 139 |
| MS.gene22002.t1 | MTR_6g008995 | 65.625 | 96 | 31 | 2 | 56 | 151 | 31 | 124 | 5.45e-33 | 121 |
| MS.gene22002.t1 | MTR_1g105960 | 59.211 | 76 | 31 | 0 | 64 | 139 | 3 | 78 | 1.32e-27 | 99.4 |
| MS.gene22002.t1 | MTR_8g062350 | 51.685 | 89 | 43 | 0 | 52 | 140 | 4 | 92 | 3.16e-27 | 101 |
| MS.gene22002.t1 | MTR_1g105955 | 61.333 | 75 | 29 | 0 | 55 | 129 | 9 | 83 | 1.27e-26 | 99.0 |
| MS.gene22002.t1 | MTR_1g105955 | 53.030 | 66 | 31 | 0 | 65 | 130 | 98 | 163 | 1.61e-17 | 75.5 |
| MS.gene22002.t1 | MTR_1g104940 | 56.962 | 79 | 34 | 0 | 62 | 140 | 14 | 92 | 3.56e-25 | 93.6 |
| MS.gene22002.t1 | MTR_3g006065 | 56.790 | 81 | 34 | 1 | 52 | 131 | 80 | 160 | 9.80e-24 | 91.7 |
| MS.gene22002.t1 | MTR_3g006065 | 42.708 | 96 | 51 | 2 | 56 | 151 | 2 | 93 | 1.13e-14 | 68.2 |
| MS.gene22002.t1 | MTR_3g006150 | 56.790 | 81 | 34 | 1 | 52 | 131 | 80 | 160 | 1.57e-23 | 90.5 |
| MS.gene22002.t1 | MTR_3g006150 | 43.750 | 96 | 50 | 2 | 56 | 151 | 2 | 93 | 9.10e-16 | 70.5 |
| MS.gene22002.t1 | MTR_3g006125 | 54.321 | 81 | 36 | 1 | 53 | 132 | 171 | 251 | 1.05e-22 | 90.5 |
| MS.gene22002.t1 | MTR_3g006125 | 42.157 | 102 | 58 | 1 | 31 | 131 | 58 | 159 | 2.77e-16 | 73.6 |
| MS.gene22002.t1 | MTR_6g008995 | 69.118 | 68 | 19 | 2 | 84 | 151 | 2 | 67 | 1.69e-22 | 92.0 |
| MS.gene22002.t1 | MTR_4g133470 | 53.750 | 80 | 35 | 1 | 52 | 131 | 164 | 241 | 3.41e-21 | 86.7 |
| MS.gene22002.t1 | MTR_4g133470 | 48.052 | 77 | 37 | 1 | 61 | 137 | 11 | 84 | 2.80e-15 | 70.9 |
| MS.gene22002.t1 | MTR_4g133470 | 40.000 | 95 | 55 | 1 | 50 | 144 | 79 | 171 | 1.07e-13 | 66.6 |
| MS.gene22002.t1 | MTR_4g133300 | 49.438 | 89 | 43 | 1 | 43 | 131 | 155 | 241 | 3.91e-21 | 86.3 |
| MS.gene22002.t1 | MTR_4g133300 | 41.053 | 95 | 54 | 1 | 50 | 144 | 79 | 171 | 1.56e-15 | 71.2 |
| MS.gene22002.t1 | MTR_4g133300 | 48.052 | 77 | 37 | 1 | 61 | 137 | 11 | 84 | 3.30e-15 | 70.5 |
| MS.gene22002.t1 | MTR_1g023820 | 95.000 | 40 | 2 | 0 | 92 | 131 | 17 | 56 | 4.44e-21 | 83.2 |
| MS.gene22002.t1 | MTR_3g006185 | 53.247 | 77 | 35 | 1 | 55 | 130 | 91 | 167 | 2.88e-20 | 82.4 |
| MS.gene22002.t1 | MTR_3g006185 | 49.351 | 77 | 38 | 1 | 56 | 131 | 2 | 78 | 1.03e-15 | 70.5 |
| MS.gene22002.t1 | MTR_7g013410 | 53.623 | 69 | 32 | 0 | 66 | 134 | 2 | 70 | 6.74e-20 | 80.5 |
| MS.gene22002.t1 | MTR_3g006105 | 51.250 | 80 | 38 | 1 | 52 | 130 | 89 | 168 | 5.15e-19 | 79.3 |
| MS.gene22002.t1 | MTR_3g006105 | 50.649 | 77 | 37 | 1 | 56 | 131 | 2 | 78 | 3.31e-16 | 72.0 |
| MS.gene22002.t1 | MTR_1g105010 | 48.052 | 77 | 39 | 1 | 55 | 130 | 8 | 84 | 6.93e-19 | 77.4 |
| MS.gene22002.t1 | MTR_1g104960 | 48.101 | 79 | 41 | 0 | 61 | 139 | 12 | 90 | 6.69e-18 | 76.3 |
| MS.gene22002.t1 | MTR_1g104960 | 48.571 | 70 | 36 | 0 | 63 | 132 | 100 | 169 | 2.00e-17 | 75.1 |
| MS.gene22002.t1 | MTR_1g109550 | 45.000 | 100 | 49 | 3 | 52 | 146 | 6 | 104 | 1.22e-17 | 74.7 |
| MS.gene22002.t1 | MTR_1g104937 | 41.558 | 77 | 45 | 0 | 61 | 137 | 11 | 87 | 1.96e-16 | 70.9 |
| MS.gene22002.t1 | MTR_2g097830 | 43.023 | 86 | 46 | 1 | 61 | 146 | 69 | 151 | 3.14e-16 | 71.6 |
| MS.gene22002.t1 | MTR_1g093310 | 51.948 | 77 | 29 | 2 | 57 | 131 | 2 | 72 | 1.44e-15 | 67.8 |
| MS.gene22002.t1 | MTR_7g089490 | 44.444 | 72 | 40 | 0 | 59 | 130 | 13 | 84 | 5.59e-15 | 67.4 |
| MS.gene22002.t1 | MTR_1g104980 | 47.059 | 68 | 36 | 0 | 64 | 131 | 1 | 68 | 1.13e-14 | 67.8 |
| MS.gene22002.t1 | MTR_1g104980 | 44.595 | 74 | 40 | 1 | 65 | 137 | 73 | 146 | 2.87e-13 | 63.9 |
| MS.gene22002.t1 | MTR_3g006010 | 48.052 | 77 | 39 | 1 | 56 | 131 | 2 | 78 | 3.01e-14 | 68.9 |
| MS.gene22002.t1 | MTR_1g091047 | 46.269 | 67 | 35 | 1 | 61 | 126 | 8 | 74 | 4.25e-14 | 63.5 |
| MS.gene22002.t1 | MTR_3g006000 | 50.000 | 68 | 32 | 2 | 67 | 132 | 11 | 78 | 1.95e-12 | 59.7 |
| MS.gene22002.t1 | MTR_7g013380 | 43.548 | 62 | 35 | 0 | 76 | 137 | 201 | 262 | 7.74e-12 | 61.6 |
| MS.gene22002.t1 | MTR_7g013380 | 43.548 | 62 | 35 | 0 | 76 | 137 | 115 | 176 | 9.07e-12 | 61.6 |
| MS.gene22002.t1 | MTR_5g055670 | 70.270 | 37 | 11 | 0 | 93 | 129 | 87 | 123 | 3.89e-11 | 57.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22002.t1 | AT1G70060 | 75.510 | 98 | 23 | 1 | 55 | 151 | 7 | 104 | 7.44e-42 | 148 |
| MS.gene22002.t1 | AT1G70060 | 75.510 | 98 | 23 | 1 | 55 | 151 | 7 | 104 | 7.44e-42 | 148 |
| MS.gene22002.t1 | AT1G24190 | 72.165 | 97 | 27 | 0 | 55 | 151 | 7 | 103 | 1.06e-40 | 145 |
| MS.gene22002.t1 | AT1G24190 | 72.165 | 97 | 27 | 0 | 55 | 151 | 7 | 103 | 1.11e-40 | 145 |
| MS.gene22002.t1 | AT1G24190 | 72.165 | 97 | 27 | 0 | 55 | 151 | 7 | 103 | 1.15e-40 | 145 |
| MS.gene22002.t1 | AT3G01320 | 66.667 | 99 | 32 | 1 | 53 | 151 | 48 | 145 | 4.39e-37 | 134 |
| MS.gene22002.t1 | AT3G01320 | 66.667 | 99 | 32 | 1 | 53 | 151 | 48 | 145 | 4.56e-37 | 134 |
| MS.gene22002.t1 | AT5G15020 | 66.667 | 96 | 30 | 1 | 56 | 151 | 46 | 139 | 1.09e-34 | 127 |
| MS.gene22002.t1 | AT5G15020 | 66.667 | 96 | 30 | 1 | 56 | 151 | 46 | 139 | 1.14e-34 | 127 |
| MS.gene22002.t1 | AT1G59890 | 58.120 | 117 | 43 | 2 | 38 | 150 | 17 | 131 | 3.66e-34 | 126 |
| MS.gene22002.t1 | AT1G59890 | 58.120 | 117 | 43 | 2 | 38 | 150 | 17 | 131 | 3.74e-34 | 126 |
| MS.gene22002.t1 | AT1G59890 | 58.120 | 117 | 43 | 2 | 38 | 150 | 17 | 131 | 4.00e-34 | 126 |
| MS.gene22002.t1 | AT1G59890 | 58.120 | 117 | 43 | 2 | 38 | 150 | 17 | 131 | 4.04e-34 | 126 |
| MS.gene22002.t1 | AT1G10450 | 63.736 | 91 | 31 | 1 | 60 | 150 | 31 | 119 | 1.63e-32 | 121 |
| MS.gene22002.t1 | AT1G10450 | 63.736 | 91 | 31 | 1 | 60 | 150 | 31 | 119 | 1.63e-32 | 121 |
| MS.gene22002.t1 | AT1G10450 | 63.736 | 91 | 31 | 1 | 60 | 150 | 82 | 170 | 1.63e-32 | 121 |
| MS.gene22002.t1 | AT5G15025 | 50.000 | 112 | 52 | 2 | 27 | 136 | 12 | 121 | 4.04e-29 | 103 |
| MS.gene22002.t1 | AT1G24200 | 51.546 | 97 | 44 | 1 | 55 | 151 | 7 | 100 | 1.14e-26 | 99.4 |
| MS.gene22002.t1 | AT1G70030 | 53.191 | 94 | 43 | 1 | 56 | 149 | 16 | 108 | 1.28e-25 | 94.7 |
| MS.gene22002.t1 | AT1G70030 | 53.191 | 94 | 43 | 1 | 56 | 149 | 16 | 108 | 4.36e-25 | 94.0 |
| MS.gene22002.t1 | AT1G70030 | 53.191 | 94 | 43 | 1 | 56 | 149 | 5 | 97 | 7.08e-25 | 94.0 |
| MS.gene22002.t1 | AT4G12020 | 56.790 | 81 | 34 | 1 | 58 | 138 | 304 | 383 | 1.38e-22 | 93.2 |
| MS.gene22002.t1 | AT4G12020 | 56.790 | 81 | 34 | 1 | 58 | 138 | 304 | 383 | 1.45e-22 | 93.2 |
| MS.gene22002.t1 | AT4G12020 | 56.790 | 81 | 34 | 1 | 58 | 138 | 304 | 383 | 1.45e-22 | 93.2 |
| MS.gene22002.t1 | AT4G12020 | 56.790 | 81 | 34 | 1 | 58 | 138 | 304 | 383 | 1.49e-22 | 93.2 |
| MS.gene22002.t1 | AT4G12020 | 56.790 | 81 | 34 | 1 | 58 | 138 | 304 | 383 | 1.50e-22 | 93.2 |
| MS.gene22002.t1 | AT4G12020 | 56.790 | 81 | 34 | 1 | 58 | 138 | 304 | 383 | 1.53e-22 | 93.2 |
| MS.gene22002.t1 | AT4G12020 | 56.790 | 81 | 34 | 1 | 58 | 138 | 304 | 383 | 1.54e-22 | 93.2 |
| MS.gene22002.t1 | AT4G12020 | 56.790 | 81 | 34 | 1 | 58 | 138 | 304 | 383 | 1.54e-22 | 93.2 |
| MS.gene22002.t1 | AT4G12020 | 56.790 | 81 | 34 | 1 | 58 | 138 | 304 | 383 | 1.54e-22 | 93.2 |
| MS.gene22002.t1 | AT4G12020 | 56.790 | 81 | 34 | 1 | 58 | 138 | 237 | 316 | 1.62e-22 | 93.2 |
| MS.gene22002.t1 | AT4G12020 | 56.790 | 81 | 34 | 1 | 58 | 138 | 304 | 383 | 1.64e-22 | 93.2 |
| MS.gene22002.t1 | AT1G27220 | 52.703 | 74 | 35 | 0 | 57 | 130 | 9 | 82 | 3.77e-22 | 87.4 |
| MS.gene22002.t1 | AT1G27250 | 46.067 | 89 | 42 | 1 | 41 | 129 | 6 | 88 | 2.45e-21 | 84.3 |
| MS.gene22002.t1 | AT5G35610 | 43.925 | 107 | 49 | 2 | 55 | 150 | 3 | 109 | 2.76e-18 | 76.6 |
| MS.gene22002.t1 | AT5G15040 | 47.761 | 67 | 35 | 0 | 65 | 131 | 6 | 72 | 2.79e-16 | 69.7 |
| MS.gene22002.t1 | AT5G15040 | 47.761 | 67 | 35 | 0 | 65 | 131 | 6 | 72 | 2.79e-16 | 69.7 |
| MS.gene22002.t1 | AT5G15040 | 47.761 | 67 | 35 | 0 | 65 | 131 | 6 | 72 | 2.79e-16 | 69.7 |
| MS.gene22002.t1 | AT1G24250 | 38.053 | 113 | 58 | 4 | 23 | 123 | 69 | 181 | 7.88e-15 | 69.7 |
| MS.gene22002.t1 | AT1G23810 | 46.154 | 65 | 35 | 0 | 59 | 123 | 106 | 170 | 3.46e-14 | 67.8 |
| MS.gene22002.t1 | AT1G24230 | 36.364 | 88 | 55 | 1 | 57 | 144 | 81 | 167 | 6.85e-14 | 67.0 |
| MS.gene22002.t1 | AT1G24230 | 41.176 | 68 | 39 | 1 | 58 | 124 | 10 | 77 | 3.87e-12 | 62.4 |
| MS.gene22002.t1 | AT1G24210 | 41.096 | 73 | 43 | 0 | 52 | 124 | 4 | 76 | 5.82e-13 | 62.8 |
| MS.gene22002.t1 | AT1G27280 | 36.709 | 79 | 50 | 0 | 59 | 137 | 78 | 156 | 3.32e-12 | 62.0 |
| MS.gene22002.t1 | AT1G27260 | 37.500 | 72 | 45 | 0 | 61 | 132 | 2 | 73 | 2.85e-11 | 59.7 |
Find 27 sgRNAs with CRISPR-Local
Find 71 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAGATTACCCTTTCGTCTA+AGG | 0.278152 | 3.3:-40745535 | MS.gene22002:CDS |
| GAATGTGCCTTCTTATTTGA+AGG | 0.371628 | 3.3:-40746623 | MS.gene22002:intron |
| ATCTCGATTCGGCGGTTGCC+CGG | 0.418989 | 3.3:+40745873 | None:intergenic |
| TAAGATCAAGTTTCAAGGTC+CGG | 0.429714 | 3.3:-40745892 | MS.gene22002:intron |
| TTAATCAAACCTGAGATTGT+TGG | 0.433476 | 3.3:+40746021 | None:intergenic |
| GCTGATGGAGCTGTGGACTT+TGG | 0.439632 | 3.3:-40746651 | None:intergenic |
| TTCTCTAAGATCAAGTTTCA+AGG | 0.445375 | 3.3:-40745897 | MS.gene22002:intron |
| AGGGTAATCTCATGGCCCTT+TGG | 0.454966 | 3.3:+40745546 | None:intergenic |
| GGTCATAGAGACTTGATCTT+GGG | 0.467943 | 3.3:-40745585 | MS.gene22002:CDS |
| CTCATGGCCCTTTGGCAGAA+AGG | 0.476655 | 3.3:+40745554 | None:intergenic |
| ATTAACGTGCCAACAATCTC+AGG | 0.477289 | 3.3:-40746030 | MS.gene22002:intron |
| AACAATACCTTCAAATAAGA+AGG | 0.490879 | 3.3:+40746616 | None:intergenic |
| AAGATCAAGTTTCAAGGTCC+GGG | 0.505302 | 3.3:-40745891 | MS.gene22002:CDS |
| AGGTCATAGAGACTTGATCT+TGG | 0.513611 | 3.3:-40745586 | MS.gene22002:CDS |
| TTTAACACCTTTCTGCCAAA+GGG | 0.527079 | 3.3:-40745561 | MS.gene22002:CDS |
| AGACAAGAAGGAAAAGTATG+AGG | 0.539440 | 3.3:-40745788 | MS.gene22002:CDS |
| ATTTAACACCTTTCTGCCAA+AGG | 0.543196 | 3.3:-40745562 | MS.gene22002:CDS |
| TTGCTCATCCTTAGACGAAA+GGG | 0.546129 | 3.3:+40745527 | None:intergenic |
| AGCATATCTCAAGGTGGTCA+AGG | 0.560863 | 3.3:-40745821 | MS.gene22002:CDS |
| TTCAGGGATTGATTCTAATG+TGG | 0.588863 | 3.3:-40746091 | MS.gene22002:intron |
| GTTGCTCATCCTTAGACGAA+AGG | 0.595557 | 3.3:+40745526 | None:intergenic |
| TAGACGAAAGGGTAATCTCA+TGG | 0.601030 | 3.3:+40745538 | None:intergenic |
| TGATGTTGTAGCATATCTCA+AGG | 0.610761 | 3.3:-40745830 | MS.gene22002:CDS |
| GGGCAACCGCCGAATCGAGA+TGG | 0.613865 | 3.3:-40745871 | MS.gene22002:CDS |
| ATTTGTAGAGTTGATACTGA+TGG | 0.633224 | 3.3:-40745639 | MS.gene22002:intron |
| TGGTGTCATTGAAAGAGTGA+AGG | 0.685356 | 3.3:-40745619 | MS.gene22002:CDS |
| TGTTGTAGCATATCTCAAGG+TGG | 0.757265 | 3.3:-40745827 | MS.gene22002:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CATAAATTTTTGATATTTGA+AGG | - | chr3.3:40745974-40745993 | MS.gene22002:intron | 15.0% |
| !!! | GTTGTTTTTGTATATATATT+GGG | - | chr3.3:40746415-40746434 | MS.gene22002:intron | 15.0% |
| !! | ATATATATACAAAAACAACG+TGG | + | chr3.3:40746414-40746433 | None:intergenic | 20.0% |
| !! | ATATTGCTTTCATGTATTAT+AGG | + | chr3.3:40745810-40745829 | None:intergenic | 20.0% |
| !! | ATGAATTTGAACATAAACTT+TGG | + | chr3.3:40745877-40745896 | None:intergenic | 20.0% |
| !! | TAAATAAGAACAACTACATT+AGG | + | chr3.3:40745942-40745961 | None:intergenic | 20.0% |
| !!! | AATTGATTTGTTTATCCTTT+TGG | - | chr3.3:40746464-40746483 | MS.gene22002:intron | 20.0% |
| !!! | CGTTGTTTTTGTATATATAT+TGG | - | chr3.3:40746414-40746433 | MS.gene22002:intron | 20.0% |
| !!! | GGTAATTTTAAATCTTATAG+CGG | + | chr3.3:40745856-40745875 | None:intergenic | 20.0% |
| !!! | TAAAATTCAACCTTCTTTTT+TGG | + | chr3.3:40746634-40746653 | None:intergenic | 20.0% |
| !!! | TTAGTGATTTTATTAAAGCT+TGG | - | chr3.3:40746002-40746021 | MS.gene22002:intron | 20.0% |
| ! | AACAATACCTTCAAATAAGA+AGG | + | chr3.3:40745516-40745535 | None:intergenic | 25.0% |
| ! | AAGAGCAAATATTAGCTATA+TGG | - | chr3.3:40745600-40745619 | MS.gene22002:CDS | 25.0% |
| ! | TGGACTTTATATATGTTTCA+GGG | - | chr3.3:40746022-40746041 | MS.gene22002:intron | 25.0% |
| ! | TTGGACTTTATATATGTTTC+AGG | - | chr3.3:40746021-40746040 | MS.gene22002:intron | 25.0% |
| ! | TTTGTATATATATTGGGAGA+GGG | - | chr3.3:40746421-40746440 | MS.gene22002:intron | 25.0% |
| !! | TTTTGTATATATATTGGGAG+AGG | - | chr3.3:40746420-40746439 | MS.gene22002:intron | 25.0% |
| !!! | TGAAAGATTTTAAAGCACAA+AGG | - | chr3.3:40746379-40746398 | MS.gene22002:intron | 25.0% |
| ACACAAATCATGTGATTGTT+AGG | - | chr3.3:40745651-40745670 | MS.gene22002:intron | 30.0% | |
| TCATTTCTTTATTGCTCCTT+CGG | + | chr3.3:40746156-40746175 | None:intergenic | 30.0% | |
| TCTTTGTGTTCACATGTAAA+GGG | - | chr3.3:40745571-40745590 | MS.gene22002:CDS | 30.0% | |
| TTAATCAAACCTGAGATTGT+TGG | + | chr3.3:40746111-40746130 | None:intergenic | 30.0% | |
| TTCTTTGTGTTCACATGTAA+AGG | - | chr3.3:40745570-40745589 | MS.gene22002:CDS | 30.0% | |
| TTGAGTGTGTTCTTATCATA+TGG | + | chr3.3:40746195-40746214 | None:intergenic | 30.0% | |
| TTGTTTACTTAATCTGCATC+AGG | - | chr3.3:40745531-40745550 | MS.gene22002:CDS | 30.0% | |
| ! | TCTCAATAGCATTTCAAGTA+AGG | + | chr3.3:40745728-40745747 | None:intergenic | 30.0% |
| !! | ATTTGTAGAGTTGATACTGA+TGG | - | chr3.3:40746490-40746509 | MS.gene22002:intron | 30.0% |
| !! | TTCTCTAAGATCAAGTTTCA+AGG | - | chr3.3:40746232-40746251 | MS.gene22002:intron | 30.0% |
| !!! | GGATATTTTTCAAGACAAGA+AGG | - | chr3.3:40746329-40746348 | MS.gene22002:intron | 30.0% |
| AACTCTACAAATGCACCAAA+AGG | + | chr3.3:40746482-40746501 | None:intergenic | 35.0% | |
| AGAAACGTGCGTATATCTTA+GGG | - | chr3.3:40745755-40745774 | MS.gene22002:CDS | 35.0% | |
| ATTTAACACCTTTCTGCCAA+AGG | - | chr3.3:40746567-40746586 | MS.gene22002:intron | 35.0% | |
| CTTTGTGTTCACATGTAAAG+GGG | - | chr3.3:40745572-40745591 | MS.gene22002:CDS | 35.0% | |
| TAAGATCAAGTTTCAAGGTC+CGG | - | chr3.3:40746237-40746256 | MS.gene22002:intron | 35.0% | |
| TAGAAACGTGCGTATATCTT+AGG | - | chr3.3:40745754-40745773 | MS.gene22002:CDS | 35.0% | |
| TGATGTTGTAGCATATCTCA+AGG | - | chr3.3:40746299-40746318 | MS.gene22002:intron | 35.0% | |
| TTTAACACCTTTCTGCCAAA+GGG | - | chr3.3:40746568-40746587 | MS.gene22002:intron | 35.0% | |
| TTTGTGTTCACATGTAAAGG+GGG | - | chr3.3:40745573-40745592 | MS.gene22002:CDS | 35.0% | |
| ! | AAAGTATGAGGACTTTTTGG+AGG | - | chr3.3:40746353-40746372 | MS.gene22002:intron | 35.0% |
| ! | AGACAAGAAGGAAAAGTATG+AGG | - | chr3.3:40746341-40746360 | MS.gene22002:intron | 35.0% |
| ! | AGAGTGAAGGAACTTTTTAG+AGG | - | chr3.3:40746523-40746542 | MS.gene22002:intron | 35.0% |
| ! | AGTTTTTGACCATCTCGATT+CGG | + | chr3.3:40746270-40746289 | None:intergenic | 35.0% |
| ! | GAATGTGCCTTCTTATTTGA+AGG | - | chr3.3:40745506-40745525 | MS.gene22002:CDS | 35.0% |
| ! | TTCAGGGATTGATTCTAATG+TGG | - | chr3.3:40746038-40746057 | MS.gene22002:CDS | 35.0% |
| !! | GGAAAAGTATGAGGACTTTT+TGG | - | chr3.3:40746350-40746369 | MS.gene22002:intron | 35.0% |
| !!! | TCAACCTTCTTTTTTGGTTG+AGG | + | chr3.3:40746628-40746647 | None:intergenic | 35.0% |
| AAGATCAAGTTTCAAGGTCC+GGG | - | chr3.3:40746238-40746257 | MS.gene22002:intron | 40.0% | |
| AGGTCATAGAGACTTGATCT+TGG | - | chr3.3:40746543-40746562 | MS.gene22002:intron | 40.0% | |
| ATTAACGTGCCAACAATCTC+AGG | - | chr3.3:40746099-40746118 | MS.gene22002:intron | 40.0% | |
| CAACTACATTAGGTTCTTCG+CGG | + | chr3.3:40745932-40745951 | None:intergenic | 40.0% | |
| GAAACGTGCGTATATCTTAG+GGG | - | chr3.3:40745756-40745775 | MS.gene22002:CDS | 40.0% | |
| GAACACACTCAACATGATTG+TGG | - | chr3.3:40746203-40746222 | MS.gene22002:intron | 40.0% | |
| GCAACCTCAACCAAAAAAGA+AGG | - | chr3.3:40746621-40746640 | MS.gene22002:intron | 40.0% | |
| GGTCATAGAGACTTGATCTT+GGG | - | chr3.3:40746544-40746563 | MS.gene22002:intron | 40.0% | |
| GTTATTATGCGTGTGTCAAC+AGG | - | chr3.3:40745622-40745641 | MS.gene22002:CDS | 40.0% | |
| TAGACGAAAGGGTAATCTCA+TGG | + | chr3.3:40746594-40746613 | None:intergenic | 40.0% | |
| TGAGATTACCCTTTCGTCTA+AGG | - | chr3.3:40746594-40746613 | MS.gene22002:intron | 40.0% | |
| TGTTGTAGCATATCTCAAGG+TGG | - | chr3.3:40746302-40746321 | MS.gene22002:intron | 40.0% | |
| TTGCTCATCCTTAGACGAAA+GGG | + | chr3.3:40746605-40746624 | None:intergenic | 40.0% | |
| TTGTGTTCACATGTAAAGGG+GGG | - | chr3.3:40745574-40745593 | MS.gene22002:CDS | 40.0% | |
| !! | TGGTGTCATTGAAAGAGTGA+AGG | - | chr3.3:40746510-40746529 | MS.gene22002:intron | 40.0% |
| AGCATATCTCAAGGTGGTCA+AGG | - | chr3.3:40746308-40746327 | MS.gene22002:intron | 45.0% | |
| GTGCGTATATCTTAGGGGAA+AGG | - | chr3.3:40745761-40745780 | MS.gene22002:CDS | 45.0% | |
| GTTGCTCATCCTTAGACGAA+AGG | + | chr3.3:40746606-40746625 | None:intergenic | 45.0% | |
| TTTATTGCTCCTTCGGCTCT+AGG | + | chr3.3:40746149-40746168 | None:intergenic | 45.0% | |
| !!! | TTTTGACCATCTCGATTCGG+CGG | + | chr3.3:40746267-40746286 | None:intergenic | 45.0% |
| AGGGTAATCTCATGGCCCTT+TGG | + | chr3.3:40746586-40746605 | None:intergenic | 50.0% | |
| TACTTAGTGCCTAGAGCCGA+AGG | - | chr3.3:40746137-40746156 | MS.gene22002:intron | 50.0% | |
| CTCATGGCCCTTTGGCAGAA+AGG | + | chr3.3:40746578-40746597 | None:intergenic | 55.0% | |
| !! | ATCTCGATTCGGCGGTTGCC+CGG | + | chr3.3:40746259-40746278 | None:intergenic | 60.0% |
| GGGCAACCGCCGAATCGAGA+TGG | - | chr3.3:40746258-40746277 | MS.gene22002:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 40745482 | 40746669 | 40745482 | ID=MS.gene22002 |
| chr3.3 | mRNA | 40745482 | 40746669 | 40745482 | ID=MS.gene22002.t1;Parent=MS.gene22002 |
| chr3.3 | exon | 40746624 | 40746669 | 40746624 | ID=MS.gene22002.t1.exon1;Parent=MS.gene22002.t1 |
| chr3.3 | CDS | 40746624 | 40746669 | 40746624 | ID=cds.MS.gene22002.t1;Parent=MS.gene22002.t1 |
| chr3.3 | exon | 40746031 | 40746108 | 40746031 | ID=MS.gene22002.t1.exon2;Parent=MS.gene22002.t1 |
| chr3.3 | CDS | 40746031 | 40746108 | 40746031 | ID=cds.MS.gene22002.t1;Parent=MS.gene22002.t1 |
| chr3.3 | exon | 40745751 | 40745910 | 40745751 | ID=MS.gene22002.t1.exon3;Parent=MS.gene22002.t1 |
| chr3.3 | CDS | 40745751 | 40745910 | 40745751 | ID=cds.MS.gene22002.t1;Parent=MS.gene22002.t1 |
| chr3.3 | exon | 40745482 | 40745653 | 40745482 | ID=MS.gene22002.t1.exon4;Parent=MS.gene22002.t1 |
| chr3.3 | CDS | 40745482 | 40745653 | 40745482 | ID=cds.MS.gene22002.t1;Parent=MS.gene22002.t1 |
| Gene Sequence |
| Protein sequence |