Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22153.t1 | XP_024639715.1 | 71.9 | 224 | 15 | 1 | 1 | 176 | 1 | 224 | 8.00E-74 | 286.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22153.t1 | Q8LLR2 | 51.6 | 225 | 59 | 2 | 1 | 175 | 1 | 225 | 1.3e-48 | 194.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22153.t1 | A0A396HQM1 | 71.2 | 215 | 14 | 1 | 1 | 167 | 1 | 215 | 1.5e-69 | 271.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene22153.t1 | TF | MADS-MIKC |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22153.t1 | MTR_5g046830 | 88.696 | 115 | 13 | 0 | 62 | 176 | 38 | 152 | 3.27e-68 | 205 |
| MS.gene22153.t1 | MTR_6g015975 | 50.917 | 218 | 56 | 2 | 1 | 167 | 1 | 218 | 2.15e-63 | 196 |
| MS.gene22153.t1 | MTR_7g016600 | 50.885 | 226 | 57 | 4 | 1 | 172 | 1 | 226 | 1.63e-62 | 193 |
| MS.gene22153.t1 | MTR_4g109810 | 49.091 | 220 | 62 | 2 | 1 | 170 | 1 | 220 | 1.30e-61 | 191 |
| MS.gene22153.t1 | MTR_8g097090 | 48.402 | 219 | 62 | 2 | 1 | 168 | 1 | 219 | 9.71e-57 | 178 |
| MS.gene22153.t1 | MTR_3g084980 | 46.429 | 224 | 68 | 2 | 1 | 172 | 1 | 224 | 1.74e-55 | 175 |
| MS.gene22153.t1 | MTR_7g075850 | 40.807 | 223 | 77 | 4 | 1 | 168 | 1 | 223 | 3.94e-41 | 139 |
| MS.gene22153.t1 | MTR_8g033270 | 48.837 | 172 | 41 | 2 | 1 | 125 | 1 | 172 | 3.21e-40 | 136 |
| MS.gene22153.t1 | MTR_4g109830 | 45.238 | 168 | 44 | 1 | 1 | 120 | 1 | 168 | 4.61e-39 | 133 |
| MS.gene22153.t1 | MTR_5g046870 | 71.739 | 92 | 16 | 2 | 1 | 84 | 1 | 90 | 1.78e-37 | 125 |
| MS.gene22153.t1 | MTR_8g066260 | 41.071 | 168 | 51 | 1 | 1 | 120 | 1 | 168 | 3.31e-36 | 126 |
| MS.gene22153.t1 | MTR_5g046790 | 40.957 | 188 | 59 | 3 | 1 | 136 | 1 | 188 | 7.01e-36 | 124 |
| MS.gene22153.t1 | MTR_7g016630 | 36.364 | 220 | 71 | 3 | 1 | 174 | 1 | 197 | 4.07e-34 | 121 |
| MS.gene22153.t1 | MTR_3g005530 | 39.362 | 188 | 65 | 4 | 1 | 140 | 1 | 187 | 8.65e-34 | 119 |
| MS.gene22153.t1 | MTR_2g017865 | 36.036 | 222 | 82 | 6 | 1 | 163 | 16 | 236 | 4.46e-33 | 118 |
| MS.gene22153.t1 | MTR_8g087860 | 36.792 | 212 | 73 | 5 | 1 | 156 | 17 | 223 | 6.71e-33 | 117 |
| MS.gene22153.t1 | MTR_4g102530 | 43.114 | 167 | 48 | 1 | 1 | 120 | 1 | 167 | 1.01e-32 | 116 |
| MS.gene22153.t1 | MTR_8g033220 | 40.351 | 171 | 54 | 1 | 1 | 123 | 1 | 171 | 1.15e-32 | 116 |
| MS.gene22153.t1 | MTR_8g033220 | 40.351 | 171 | 54 | 1 | 1 | 123 | 1 | 171 | 1.42e-32 | 116 |
| MS.gene22153.t1 | MTR_3g452380 | 39.884 | 173 | 57 | 2 | 1 | 126 | 16 | 188 | 2.25e-32 | 116 |
| MS.gene22153.t1 | MTR_6g464720 | 39.560 | 182 | 50 | 2 | 1 | 133 | 1 | 171 | 4.42e-32 | 115 |
| MS.gene22153.t1 | MTR_7g075870 | 42.405 | 158 | 41 | 2 | 1 | 108 | 1 | 158 | 8.75e-32 | 114 |
| MS.gene22153.t1 | MTR_7g075870 | 42.138 | 159 | 41 | 2 | 1 | 108 | 1 | 159 | 1.16e-31 | 113 |
| MS.gene22153.t1 | MTR_1g101970 | 38.068 | 176 | 50 | 3 | 1 | 128 | 1 | 165 | 1.87e-29 | 107 |
| MS.gene22153.t1 | MTR_2g461710 | 76.271 | 59 | 14 | 0 | 1 | 59 | 1 | 59 | 2.43e-28 | 100 |
| MS.gene22153.t1 | MTR_1g053070 | 38.764 | 178 | 58 | 2 | 1 | 127 | 1 | 178 | 6.81e-28 | 104 |
| MS.gene22153.t1 | MTR_1g038300 | 35.057 | 174 | 61 | 1 | 1 | 122 | 1 | 174 | 7.92e-28 | 104 |
| MS.gene22153.t1 | MTR_2g009890 | 36.257 | 171 | 63 | 1 | 1 | 125 | 1 | 171 | 3.87e-27 | 103 |
| MS.gene22153.t1 | MTR_5g032150 | 34.171 | 199 | 83 | 3 | 1 | 151 | 1 | 199 | 2.07e-25 | 97.8 |
| MS.gene22153.t1 | MTR_0003s0590 | 30.380 | 237 | 99 | 5 | 1 | 172 | 1 | 236 | 3.10e-25 | 98.2 |
| MS.gene22153.t1 | MTR_5g066960 | 64.407 | 59 | 21 | 0 | 1 | 59 | 1 | 59 | 3.54e-24 | 90.1 |
| MS.gene22153.t1 | MTR_5g031000 | 34.416 | 154 | 56 | 1 | 1 | 109 | 1 | 154 | 9.07e-24 | 93.6 |
| MS.gene22153.t1 | MTR_5g031000 | 34.416 | 154 | 56 | 1 | 1 | 109 | 1 | 154 | 1.33e-23 | 93.6 |
| MS.gene22153.t1 | MTR_5g066180 | 32.609 | 184 | 79 | 1 | 1 | 139 | 1 | 184 | 1.49e-23 | 93.2 |
| MS.gene22153.t1 | MTR_4g036050 | 67.797 | 59 | 19 | 0 | 1 | 59 | 1 | 59 | 2.37e-23 | 91.3 |
| MS.gene22153.t1 | MTR_4g036050 | 67.797 | 59 | 19 | 0 | 1 | 59 | 1 | 59 | 2.94e-23 | 91.3 |
| MS.gene22153.t1 | MTR_4g036050 | 67.797 | 59 | 19 | 0 | 1 | 59 | 1 | 59 | 2.97e-23 | 91.3 |
| MS.gene22153.t1 | MTR_4g036050 | 67.797 | 59 | 19 | 0 | 1 | 59 | 1 | 59 | 3.48e-23 | 91.7 |
| MS.gene22153.t1 | MTR_3g113030 | 34.320 | 169 | 67 | 1 | 1 | 125 | 1 | 169 | 3.86e-23 | 92.0 |
| MS.gene22153.t1 | MTR_3g088615 | 58.462 | 65 | 27 | 0 | 1 | 65 | 1 | 65 | 8.33e-23 | 90.1 |
| MS.gene22153.t1 | MTR_5g032520 | 35.119 | 168 | 62 | 2 | 1 | 121 | 1 | 168 | 3.60e-22 | 89.4 |
| MS.gene22153.t1 | MTR_4g084740 | 62.903 | 62 | 22 | 1 | 1 | 62 | 1 | 61 | 4.46e-21 | 88.6 |
| MS.gene22153.t1 | MTR_5g021270 | 62.712 | 59 | 22 | 0 | 1 | 59 | 1 | 59 | 7.27e-21 | 86.3 |
| MS.gene22153.t1 | MTR_5g021270 | 62.712 | 59 | 22 | 0 | 1 | 59 | 1 | 59 | 7.73e-21 | 85.9 |
| MS.gene22153.t1 | MTR_4g093030 | 62.712 | 59 | 22 | 0 | 1 | 59 | 1 | 59 | 8.70e-21 | 84.3 |
| MS.gene22153.t1 | MTR_4g093970 | 28.718 | 195 | 89 | 2 | 1 | 145 | 27 | 221 | 2.45e-20 | 84.7 |
| MS.gene22153.t1 | MTR_1g029670 | 53.846 | 65 | 30 | 0 | 1 | 65 | 1 | 65 | 4.96e-20 | 82.8 |
| MS.gene22153.t1 | MTR_3g102570 | 60.938 | 64 | 24 | 1 | 1 | 64 | 1 | 63 | 1.42e-19 | 84.0 |
| MS.gene22153.t1 | MTR_1g041615 | 70.833 | 48 | 13 | 1 | 16 | 63 | 20 | 66 | 2.27e-17 | 74.7 |
| MS.gene22153.t1 | MTR_1g063160 | 35.455 | 110 | 58 | 1 | 1 | 97 | 1 | 110 | 9.14e-17 | 74.3 |
| MS.gene22153.t1 | MTR_8g079502 | 38.182 | 110 | 55 | 2 | 1 | 97 | 1 | 110 | 1.99e-16 | 73.2 |
| MS.gene22153.t1 | MTR_2g030740 | 35.246 | 122 | 63 | 3 | 2 | 114 | 9 | 123 | 2.42e-16 | 74.3 |
| MS.gene22153.t1 | MTR_8g051580 | 45.946 | 74 | 35 | 1 | 1 | 69 | 1 | 74 | 3.85e-16 | 72.4 |
| MS.gene22153.t1 | MTR_1g108580 | 55.357 | 56 | 25 | 0 | 2 | 57 | 9 | 64 | 8.46e-16 | 72.4 |
| MS.gene22153.t1 | MTR_1g108510 | 53.571 | 56 | 26 | 0 | 2 | 57 | 9 | 64 | 1.25e-15 | 72.0 |
| MS.gene22153.t1 | MTR_3g030770 | 53.571 | 56 | 26 | 0 | 2 | 57 | 9 | 64 | 1.30e-15 | 72.0 |
| MS.gene22153.t1 | MTR_1g077360 | 34.615 | 130 | 72 | 2 | 2 | 125 | 9 | 131 | 2.18e-15 | 71.6 |
| MS.gene22153.t1 | MTR_5g041650 | 52.308 | 65 | 29 | 2 | 1 | 64 | 38 | 101 | 2.59e-15 | 72.8 |
| MS.gene22153.t1 | MTR_3g052920 | 37.288 | 118 | 66 | 3 | 2 | 114 | 9 | 123 | 2.81e-15 | 71.2 |
| MS.gene22153.t1 | MTR_4g094632 | 49.180 | 61 | 31 | 0 | 1 | 61 | 1 | 61 | 2.89e-15 | 69.7 |
| MS.gene22153.t1 | MTR_1g105910 | 36.607 | 112 | 65 | 3 | 2 | 109 | 9 | 118 | 3.42e-15 | 71.2 |
| MS.gene22153.t1 | MTR_1g054265 | 40.000 | 80 | 48 | 0 | 1 | 80 | 1 | 80 | 3.66e-15 | 69.7 |
| MS.gene22153.t1 | MTR_2g093190 | 51.786 | 56 | 27 | 0 | 2 | 57 | 9 | 64 | 4.19e-15 | 70.9 |
| MS.gene22153.t1 | MTR_8g086290 | 50.000 | 62 | 29 | 1 | 2 | 63 | 12 | 71 | 4.66e-15 | 69.7 |
| MS.gene22153.t1 | MTR_1g047550 | 52.632 | 57 | 27 | 0 | 1 | 57 | 1 | 57 | 4.69e-15 | 69.7 |
| MS.gene22153.t1 | MTR_3g052870 | 35.043 | 117 | 70 | 3 | 2 | 114 | 9 | 123 | 5.07e-15 | 70.5 |
| MS.gene22153.t1 | MTR_1g012570 | 35.246 | 122 | 63 | 3 | 2 | 114 | 9 | 123 | 5.77e-15 | 70.5 |
| MS.gene22153.t1 | MTR_2g105290 | 47.692 | 65 | 34 | 0 | 1 | 65 | 11 | 75 | 7.32e-15 | 68.9 |
| MS.gene22153.t1 | MTR_8g043650 | 33.607 | 122 | 65 | 3 | 2 | 114 | 9 | 123 | 8.53e-15 | 70.1 |
| MS.gene22153.t1 | MTR_5g045560 | 56.140 | 57 | 25 | 0 | 1 | 57 | 8 | 64 | 1.48e-14 | 69.3 |
| MS.gene22153.t1 | MTR_1g105920 | 53.571 | 56 | 26 | 0 | 2 | 57 | 9 | 64 | 1.92e-14 | 68.9 |
| MS.gene22153.t1 | MTR_1g075600 | 53.571 | 56 | 26 | 0 | 2 | 57 | 9 | 64 | 2.91e-14 | 68.6 |
| MS.gene22153.t1 | MTR_4g131030 | 49.123 | 57 | 29 | 0 | 1 | 57 | 1 | 57 | 3.10e-14 | 68.2 |
| MS.gene22153.t1 | MTR_2g085280 | 55.357 | 56 | 25 | 0 | 2 | 57 | 9 | 64 | 5.16e-14 | 67.8 |
| MS.gene22153.t1 | MTR_0121s0100 | 50.000 | 56 | 28 | 0 | 2 | 57 | 9 | 64 | 5.26e-14 | 65.9 |
| MS.gene22153.t1 | MTR_2g085250 | 55.357 | 56 | 25 | 0 | 2 | 57 | 9 | 64 | 5.55e-14 | 67.8 |
| MS.gene22153.t1 | MTR_4g094638 | 46.875 | 64 | 32 | 1 | 1 | 64 | 1 | 62 | 7.72e-14 | 66.2 |
| MS.gene22153.t1 | MTR_5g053390 | 42.553 | 94 | 47 | 2 | 2 | 95 | 9 | 95 | 8.51e-14 | 67.4 |
| MS.gene22153.t1 | MTR_8g046350 | 36.709 | 79 | 48 | 1 | 1 | 77 | 1 | 79 | 1.02e-13 | 65.9 |
| MS.gene22153.t1 | MTR_5g055100 | 55.357 | 56 | 25 | 0 | 2 | 57 | 9 | 64 | 1.65e-13 | 66.6 |
| MS.gene22153.t1 | MTR_1g106070 | 50.000 | 56 | 28 | 0 | 2 | 57 | 9 | 64 | 2.70e-13 | 65.1 |
| MS.gene22153.t1 | MTR_4g108720 | 50.943 | 53 | 26 | 0 | 1 | 53 | 1 | 53 | 6.25e-13 | 65.9 |
| MS.gene22153.t1 | MTR_7g028448 | 60.417 | 48 | 17 | 1 | 16 | 63 | 26 | 71 | 9.12e-13 | 63.2 |
| MS.gene22153.t1 | MTR_4g036915 | 60.417 | 48 | 17 | 1 | 16 | 63 | 26 | 71 | 9.12e-13 | 63.2 |
| MS.gene22153.t1 | MTR_3g080940 | 45.614 | 57 | 31 | 0 | 1 | 57 | 8 | 64 | 3.94e-12 | 62.4 |
| MS.gene22153.t1 | MTR_0121s0080 | 50.000 | 58 | 27 | 1 | 2 | 57 | 7 | 64 | 5.67e-12 | 62.4 |
| MS.gene22153.t1 | MTR_3g030780 | 46.429 | 56 | 30 | 0 | 2 | 57 | 9 | 64 | 8.37e-12 | 60.1 |
| MS.gene22153.t1 | MTR_6g018920 | 26.812 | 138 | 87 | 4 | 1 | 138 | 1 | 124 | 5.07e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22153.t1 | AT5G15800 | 50.218 | 229 | 60 | 2 | 1 | 175 | 1 | 229 | 1.46e-62 | 194 |
| MS.gene22153.t1 | AT5G15800 | 51.131 | 221 | 54 | 2 | 1 | 167 | 1 | 221 | 2.41e-60 | 188 |
| MS.gene22153.t1 | AT3G02310 | 46.930 | 228 | 68 | 3 | 1 | 175 | 1 | 228 | 1.79e-59 | 186 |
| MS.gene22153.t1 | AT2G03710 | 46.444 | 239 | 65 | 5 | 1 | 176 | 1 | 239 | 4.24e-58 | 182 |
| MS.gene22153.t1 | AT2G03710 | 46.250 | 240 | 65 | 5 | 1 | 176 | 1 | 240 | 7.19e-58 | 182 |
| MS.gene22153.t1 | AT1G24260 | 47.297 | 222 | 63 | 3 | 1 | 168 | 1 | 222 | 9.85e-54 | 171 |
| MS.gene22153.t1 | AT1G24260 | 47.085 | 223 | 63 | 3 | 1 | 168 | 1 | 223 | 1.42e-53 | 171 |
| MS.gene22153.t1 | AT2G03710 | 53.488 | 172 | 32 | 1 | 1 | 124 | 1 | 172 | 1.44e-53 | 169 |
| MS.gene22153.t1 | AT3G02310 | 50.279 | 179 | 41 | 1 | 1 | 131 | 1 | 179 | 6.00e-48 | 155 |
| MS.gene22153.t1 | AT1G24260 | 44.292 | 219 | 61 | 2 | 1 | 168 | 1 | 209 | 1.18e-46 | 152 |
| MS.gene22153.t1 | AT2G45650 | 42.411 | 224 | 71 | 6 | 1 | 168 | 1 | 222 | 1.31e-43 | 145 |
| MS.gene22153.t1 | AT5G60910 | 42.529 | 174 | 52 | 1 | 1 | 126 | 1 | 174 | 7.74e-40 | 135 |
| MS.gene22153.t1 | AT1G69120 | 40.000 | 180 | 60 | 1 | 1 | 132 | 1 | 180 | 6.74e-37 | 127 |
| MS.gene22153.t1 | AT1G69120 | 40.000 | 180 | 60 | 1 | 1 | 132 | 1 | 180 | 2.20e-36 | 127 |
| MS.gene22153.t1 | AT3G61120 | 37.900 | 219 | 83 | 4 | 1 | 168 | 1 | 217 | 4.17e-36 | 125 |
| MS.gene22153.t1 | AT4G09960 | 41.714 | 175 | 53 | 4 | 1 | 127 | 1 | 174 | 4.23e-36 | 125 |
| MS.gene22153.t1 | AT4G09960 | 41.714 | 175 | 53 | 4 | 1 | 127 | 2 | 175 | 4.88e-36 | 125 |
| MS.gene22153.t1 | AT4G09960 | 41.714 | 175 | 53 | 4 | 1 | 127 | 11 | 184 | 5.27e-36 | 125 |
| MS.gene22153.t1 | AT4G09960 | 41.714 | 175 | 53 | 4 | 1 | 127 | 27 | 200 | 1.50e-35 | 125 |
| MS.gene22153.t1 | AT1G26310 | 40.526 | 190 | 63 | 1 | 1 | 140 | 1 | 190 | 1.57e-35 | 124 |
| MS.gene22153.t1 | AT4G09960 | 41.011 | 178 | 54 | 4 | 1 | 127 | 96 | 273 | 1.88e-34 | 124 |
| MS.gene22153.t1 | AT3G58780 | 41.916 | 167 | 55 | 4 | 1 | 126 | 16 | 181 | 1.02e-33 | 119 |
| MS.gene22153.t1 | AT4G18960 | 36.620 | 213 | 80 | 4 | 2 | 159 | 18 | 230 | 2.53e-33 | 119 |
| MS.gene22153.t1 | AT2G42830 | 36.771 | 223 | 89 | 6 | 1 | 171 | 16 | 238 | 3.69e-33 | 118 |
| MS.gene22153.t1 | AT2G42830 | 36.937 | 222 | 88 | 6 | 1 | 171 | 16 | 236 | 5.52e-33 | 118 |
| MS.gene22153.t1 | AT3G58780 | 40.230 | 174 | 55 | 4 | 1 | 126 | 22 | 194 | 1.47e-32 | 117 |
| MS.gene22153.t1 | AT3G58780 | 40.230 | 174 | 55 | 4 | 1 | 126 | 16 | 188 | 1.52e-32 | 117 |
| MS.gene22153.t1 | AT4G09960 | 40.000 | 175 | 42 | 4 | 1 | 127 | 1 | 160 | 2.11e-32 | 115 |
| MS.gene22153.t1 | AT4G11880 | 43.590 | 156 | 41 | 1 | 1 | 109 | 1 | 156 | 1.96e-31 | 112 |
| MS.gene22153.t1 | AT4G11880 | 43.590 | 156 | 41 | 1 | 1 | 109 | 1 | 156 | 1.96e-31 | 112 |
| MS.gene22153.t1 | AT2G45660 | 41.176 | 170 | 53 | 1 | 1 | 123 | 1 | 170 | 2.14e-31 | 113 |
| MS.gene22153.t1 | AT2G45660 | 42.308 | 156 | 43 | 1 | 1 | 109 | 1 | 156 | 2.54e-31 | 111 |
| MS.gene22153.t1 | AT4G22950 | 39.766 | 171 | 57 | 1 | 1 | 125 | 1 | 171 | 3.27e-31 | 111 |
| MS.gene22153.t1 | AT3G30260 | 39.735 | 151 | 43 | 1 | 1 | 103 | 1 | 151 | 4.10e-31 | 113 |
| MS.gene22153.t1 | AT4G22950 | 40.237 | 169 | 55 | 1 | 1 | 123 | 1 | 169 | 1.70e-30 | 110 |
| MS.gene22153.t1 | AT4G22950 | 40.237 | 169 | 55 | 1 | 1 | 123 | 1 | 169 | 1.70e-30 | 110 |
| MS.gene22153.t1 | AT4G11880 | 45.833 | 144 | 31 | 1 | 1 | 97 | 1 | 144 | 1.85e-30 | 110 |
| MS.gene22153.t1 | AT4G11880 | 45.833 | 144 | 31 | 1 | 1 | 97 | 1 | 144 | 1.85e-30 | 110 |
| MS.gene22153.t1 | AT5G62165 | 38.378 | 185 | 61 | 3 | 1 | 138 | 1 | 179 | 5.54e-29 | 106 |
| MS.gene22153.t1 | AT5G62165 | 38.378 | 185 | 61 | 3 | 1 | 138 | 1 | 179 | 5.54e-29 | 106 |
| MS.gene22153.t1 | AT5G62165 | 38.378 | 185 | 61 | 3 | 1 | 138 | 1 | 179 | 5.54e-29 | 106 |
| MS.gene22153.t1 | AT2G14210 | 36.095 | 169 | 61 | 1 | 1 | 122 | 1 | 169 | 5.84e-28 | 104 |
| MS.gene22153.t1 | AT3G58780 | 40.816 | 147 | 40 | 2 | 1 | 100 | 16 | 162 | 6.28e-28 | 105 |
| MS.gene22153.t1 | AT2G14210 | 36.095 | 169 | 61 | 1 | 1 | 122 | 1 | 169 | 7.24e-28 | 104 |
| MS.gene22153.t1 | AT3G58780 | 70.769 | 65 | 19 | 0 | 1 | 65 | 16 | 80 | 1.52e-27 | 104 |
| MS.gene22153.t1 | AT5G65060 | 38.562 | 153 | 65 | 3 | 1 | 124 | 1 | 153 | 2.55e-27 | 101 |
| MS.gene22153.t1 | AT5G51870 | 34.653 | 202 | 73 | 4 | 1 | 152 | 1 | 193 | 3.44e-27 | 102 |
| MS.gene22153.t1 | AT5G62165 | 38.462 | 156 | 49 | 1 | 1 | 109 | 1 | 156 | 3.62e-27 | 100 |
| MS.gene22153.t1 | AT5G62165 | 38.462 | 156 | 49 | 1 | 1 | 109 | 1 | 156 | 3.62e-27 | 100 |
| MS.gene22153.t1 | AT5G62165 | 38.462 | 156 | 49 | 1 | 1 | 109 | 1 | 156 | 3.62e-27 | 100 |
| MS.gene22153.t1 | AT2G22540 | 36.310 | 168 | 60 | 1 | 1 | 121 | 1 | 168 | 4.08e-27 | 102 |
| MS.gene22153.t1 | AT2G22540 | 36.310 | 168 | 60 | 1 | 1 | 121 | 1 | 168 | 4.08e-27 | 102 |
| MS.gene22153.t1 | AT5G65060 | 33.333 | 177 | 78 | 2 | 1 | 137 | 1 | 177 | 6.97e-27 | 100 |
| MS.gene22153.t1 | AT5G65050 | 35.165 | 182 | 84 | 4 | 1 | 148 | 1 | 182 | 1.05e-26 | 100 |
| MS.gene22153.t1 | AT5G23260 | 36.047 | 172 | 64 | 1 | 1 | 126 | 1 | 172 | 1.58e-26 | 101 |
| MS.gene22153.t1 | AT5G13790 | 37.714 | 175 | 68 | 3 | 1 | 135 | 1 | 174 | 1.60e-26 | 101 |
| MS.gene22153.t1 | AT5G65070 | 39.634 | 164 | 59 | 3 | 1 | 124 | 1 | 164 | 1.90e-26 | 100 |
| MS.gene22153.t1 | AT5G65060 | 34.756 | 164 | 67 | 2 | 1 | 124 | 1 | 164 | 2.25e-26 | 99.8 |
| MS.gene22153.t1 | AT5G23260 | 36.047 | 172 | 64 | 1 | 1 | 126 | 17 | 188 | 2.52e-26 | 101 |
| MS.gene22153.t1 | AT4G37940 | 34.483 | 174 | 68 | 1 | 1 | 128 | 1 | 174 | 2.84e-26 | 100 |
| MS.gene22153.t1 | AT5G62165 | 71.667 | 60 | 17 | 0 | 1 | 60 | 1 | 60 | 3.07e-26 | 96.7 |
| MS.gene22153.t1 | AT5G62165 | 72.881 | 59 | 16 | 0 | 1 | 59 | 1 | 59 | 3.76e-26 | 97.8 |
| MS.gene22153.t1 | AT5G62165 | 72.881 | 59 | 16 | 0 | 1 | 59 | 1 | 59 | 3.76e-26 | 97.8 |
| MS.gene22153.t1 | AT5G62165 | 72.881 | 59 | 16 | 0 | 1 | 59 | 1 | 59 | 3.76e-26 | 97.8 |
| MS.gene22153.t1 | AT5G62165 | 72.881 | 59 | 16 | 0 | 1 | 59 | 1 | 59 | 3.76e-26 | 97.8 |
| MS.gene22153.t1 | AT5G62165 | 72.881 | 59 | 16 | 0 | 1 | 59 | 1 | 59 | 3.76e-26 | 97.8 |
| MS.gene22153.t1 | AT3G57230 | 33.690 | 187 | 64 | 2 | 1 | 127 | 1 | 187 | 4.27e-26 | 100 |
| MS.gene22153.t1 | AT3G57230 | 33.690 | 187 | 64 | 2 | 1 | 127 | 1 | 187 | 4.27e-26 | 100 |
| MS.gene22153.t1 | AT5G51870 | 33.654 | 208 | 79 | 5 | 1 | 152 | 1 | 205 | 4.56e-26 | 99.4 |
| MS.gene22153.t1 | AT5G51870 | 33.654 | 208 | 79 | 5 | 1 | 152 | 11 | 215 | 4.90e-26 | 99.8 |
| MS.gene22153.t1 | AT5G13790 | 37.079 | 178 | 68 | 3 | 1 | 135 | 1 | 177 | 5.07e-26 | 100 |
| MS.gene22153.t1 | AT3G57390 | 38.547 | 179 | 56 | 4 | 1 | 125 | 1 | 179 | 7.41e-26 | 99.0 |
| MS.gene22153.t1 | AT5G65050 | 36.585 | 164 | 64 | 3 | 1 | 124 | 1 | 164 | 8.05e-26 | 97.8 |
| MS.gene22153.t1 | AT3G57390 | 38.547 | 179 | 56 | 4 | 1 | 125 | 1 | 179 | 1.13e-25 | 99.4 |
| MS.gene22153.t1 | AT5G62165 | 71.667 | 60 | 17 | 0 | 1 | 60 | 1 | 60 | 1.36e-25 | 97.8 |
| MS.gene22153.t1 | AT5G62165 | 71.667 | 60 | 17 | 0 | 1 | 60 | 1 | 60 | 1.36e-25 | 97.8 |
| MS.gene22153.t1 | AT5G65050 | 35.366 | 164 | 66 | 2 | 1 | 124 | 1 | 164 | 3.60e-25 | 96.7 |
| MS.gene22153.t1 | AT3G57230 | 38.028 | 142 | 42 | 1 | 1 | 96 | 1 | 142 | 3.82e-25 | 95.1 |
| MS.gene22153.t1 | AT3G54340 | 34.911 | 169 | 66 | 2 | 1 | 125 | 1 | 169 | 5.58e-25 | 97.1 |
| MS.gene22153.t1 | AT5G10140 | 36.424 | 151 | 56 | 1 | 1 | 111 | 1 | 151 | 8.09e-25 | 95.1 |
| MS.gene22153.t1 | AT5G10140 | 36.364 | 165 | 65 | 1 | 1 | 125 | 1 | 165 | 2.98e-24 | 94.4 |
| MS.gene22153.t1 | AT4G37940 | 36.129 | 155 | 53 | 1 | 1 | 109 | 1 | 155 | 3.05e-24 | 94.7 |
| MS.gene22153.t1 | AT5G20240 | 60.563 | 71 | 27 | 1 | 1 | 71 | 1 | 70 | 3.23e-24 | 92.8 |
| MS.gene22153.t1 | AT5G23260 | 35.465 | 172 | 60 | 2 | 1 | 126 | 17 | 183 | 4.05e-24 | 95.5 |
| MS.gene22153.t1 | AT4G37940 | 37.589 | 141 | 42 | 1 | 1 | 95 | 1 | 141 | 4.49e-24 | 93.2 |
| MS.gene22153.t1 | AT5G65050 | 36.486 | 148 | 54 | 2 | 1 | 108 | 1 | 148 | 5.61e-24 | 93.2 |
| MS.gene22153.t1 | AT5G51860 | 34.810 | 158 | 55 | 1 | 1 | 110 | 1 | 158 | 6.02e-24 | 93.6 |
| MS.gene22153.t1 | AT5G51860 | 34.810 | 158 | 55 | 1 | 1 | 110 | 1 | 158 | 6.20e-24 | 93.6 |
| MS.gene22153.t1 | AT2G22630 | 32.039 | 206 | 88 | 4 | 1 | 156 | 1 | 204 | 7.84e-24 | 94.0 |
| MS.gene22153.t1 | AT2G22630 | 32.039 | 206 | 88 | 4 | 1 | 156 | 1 | 204 | 7.84e-24 | 94.0 |
| MS.gene22153.t1 | AT5G20240 | 60.563 | 71 | 27 | 1 | 1 | 71 | 1 | 70 | 9.88e-24 | 93.2 |
| MS.gene22153.t1 | AT5G10140 | 37.143 | 140 | 48 | 1 | 1 | 100 | 1 | 140 | 1.73e-23 | 91.3 |
| MS.gene22153.t1 | AT5G65070 | 55.814 | 86 | 33 | 2 | 1 | 83 | 1 | 84 | 2.04e-23 | 90.5 |
| MS.gene22153.t1 | AT2G22540 | 34.969 | 163 | 64 | 1 | 1 | 121 | 1 | 163 | 2.15e-23 | 92.8 |
| MS.gene22153.t1 | AT5G65070 | 65.625 | 64 | 22 | 0 | 1 | 64 | 1 | 64 | 2.30e-23 | 92.8 |
| MS.gene22153.t1 | AT5G51870 | 35.172 | 145 | 46 | 1 | 1 | 97 | 1 | 145 | 2.37e-23 | 91.3 |
| MS.gene22153.t1 | AT5G10140 | 35.976 | 164 | 65 | 1 | 1 | 124 | 1 | 164 | 2.50e-23 | 91.7 |
| MS.gene22153.t1 | AT5G65080 | 36.788 | 193 | 77 | 5 | 1 | 154 | 8 | 194 | 3.97e-23 | 91.3 |
| MS.gene22153.t1 | AT4G24540 | 30.667 | 225 | 94 | 5 | 1 | 170 | 1 | 218 | 4.72e-23 | 91.7 |
| MS.gene22153.t1 | AT5G51870 | 35.172 | 145 | 46 | 1 | 1 | 97 | 24 | 168 | 5.13e-23 | 90.9 |
| MS.gene22153.t1 | AT5G65070 | 60.526 | 76 | 27 | 1 | 1 | 73 | 1 | 76 | 8.11e-23 | 90.9 |
| MS.gene22153.t1 | AT5G65070 | 60.526 | 76 | 27 | 1 | 1 | 73 | 1 | 76 | 9.91e-23 | 90.9 |
| MS.gene22153.t1 | AT5G23260 | 64.407 | 59 | 21 | 0 | 1 | 59 | 1 | 59 | 1.14e-22 | 90.9 |
| MS.gene22153.t1 | AT1G71692 | 35.644 | 202 | 72 | 8 | 1 | 145 | 1 | 201 | 2.22e-22 | 89.7 |
| MS.gene22153.t1 | AT5G65080 | 38.926 | 149 | 51 | 3 | 1 | 109 | 8 | 156 | 8.31e-22 | 87.8 |
| MS.gene22153.t1 | AT1G22130 | 62.903 | 62 | 23 | 0 | 1 | 62 | 1 | 62 | 2.95e-21 | 89.0 |
| MS.gene22153.t1 | AT1G77980 | 61.290 | 62 | 24 | 0 | 1 | 62 | 1 | 62 | 5.72e-21 | 88.2 |
| MS.gene22153.t1 | AT1G31140 | 59.016 | 61 | 25 | 0 | 1 | 61 | 1 | 61 | 5.18e-19 | 80.9 |
| MS.gene22153.t1 | AT1G31140 | 59.016 | 61 | 25 | 0 | 1 | 61 | 1 | 61 | 5.54e-19 | 80.9 |
| MS.gene22153.t1 | AT1G77080 | 33.133 | 166 | 71 | 2 | 1 | 126 | 1 | 166 | 5.68e-19 | 79.7 |
| MS.gene22153.t1 | AT1G77080 | 33.125 | 160 | 71 | 2 | 1 | 124 | 1 | 160 | 9.17e-19 | 79.7 |
| MS.gene22153.t1 | AT1G77080 | 32.317 | 164 | 71 | 2 | 1 | 124 | 1 | 164 | 2.16e-18 | 78.6 |
| MS.gene22153.t1 | AT1G77080 | 32.317 | 164 | 71 | 2 | 1 | 124 | 1 | 164 | 3.56e-18 | 78.2 |
| MS.gene22153.t1 | AT1G77950 | 56.452 | 62 | 27 | 0 | 1 | 62 | 1 | 62 | 5.50e-18 | 79.0 |
| MS.gene22153.t1 | AT1G77950 | 56.452 | 62 | 27 | 0 | 1 | 62 | 1 | 62 | 5.50e-18 | 79.0 |
| MS.gene22153.t1 | AT1G77950 | 56.452 | 62 | 27 | 0 | 1 | 62 | 1 | 62 | 5.50e-18 | 79.0 |
| MS.gene22153.t1 | AT1G77950 | 56.452 | 62 | 27 | 0 | 1 | 62 | 1 | 62 | 5.50e-18 | 79.0 |
| MS.gene22153.t1 | AT4G37435 | 56.452 | 62 | 27 | 0 | 1 | 62 | 1 | 62 | 6.98e-18 | 77.4 |
| MS.gene22153.t1 | AT1G77080 | 33.793 | 145 | 60 | 2 | 1 | 109 | 1 | 145 | 1.04e-16 | 73.2 |
| MS.gene22153.t1 | AT2G03060 | 48.611 | 72 | 36 | 1 | 1 | 72 | 1 | 71 | 3.95e-16 | 75.1 |
| MS.gene22153.t1 | AT2G03060 | 48.611 | 72 | 36 | 1 | 1 | 72 | 1 | 71 | 3.95e-16 | 75.1 |
| MS.gene22153.t1 | AT2G03060 | 48.611 | 72 | 36 | 1 | 1 | 72 | 1 | 71 | 3.95e-16 | 75.1 |
| MS.gene22153.t1 | AT2G03060 | 48.611 | 72 | 36 | 1 | 1 | 72 | 1 | 71 | 4.62e-16 | 75.1 |
| MS.gene22153.t1 | AT1G77080 | 61.667 | 60 | 23 | 0 | 1 | 60 | 1 | 60 | 4.64e-16 | 73.2 |
| MS.gene22153.t1 | AT1G01530 | 42.268 | 97 | 37 | 3 | 1 | 96 | 6 | 84 | 1.71e-15 | 72.0 |
| MS.gene22153.t1 | AT1G18750 | 52.632 | 57 | 27 | 0 | 1 | 57 | 1 | 57 | 6.22e-15 | 71.6 |
| MS.gene22153.t1 | AT1G18750 | 52.632 | 57 | 27 | 0 | 1 | 57 | 1 | 57 | 6.92e-15 | 71.6 |
| MS.gene22153.t1 | AT1G18750 | 52.632 | 57 | 27 | 0 | 1 | 57 | 1 | 57 | 8.32e-15 | 71.6 |
| MS.gene22153.t1 | AT3G04100 | 32.520 | 123 | 76 | 2 | 2 | 121 | 14 | 132 | 3.32e-14 | 68.2 |
| MS.gene22153.t1 | AT4G36590 | 55.357 | 56 | 25 | 0 | 2 | 57 | 7 | 62 | 6.64e-14 | 67.8 |
| MS.gene22153.t1 | AT3G66656 | 46.875 | 64 | 32 | 1 | 1 | 64 | 1 | 62 | 8.79e-14 | 66.2 |
| MS.gene22153.t1 | AT1G65360 | 47.368 | 57 | 30 | 0 | 1 | 57 | 6 | 62 | 2.98e-13 | 65.9 |
| MS.gene22153.t1 | AT2G34440 | 45.614 | 57 | 31 | 0 | 1 | 57 | 1 | 57 | 3.25e-13 | 64.7 |
| MS.gene22153.t1 | AT5G60440 | 51.786 | 56 | 27 | 0 | 2 | 57 | 7 | 62 | 3.72e-13 | 66.2 |
| MS.gene22153.t1 | AT1G47760 | 35.821 | 134 | 64 | 5 | 1 | 127 | 1 | 119 | 3.81e-13 | 64.7 |
| MS.gene22153.t1 | AT1G72350 | 53.571 | 56 | 26 | 0 | 2 | 57 | 43 | 98 | 4.84e-13 | 65.1 |
| MS.gene22153.t1 | AT1G69540 | 43.056 | 72 | 39 | 2 | 1 | 72 | 1 | 70 | 8.02e-13 | 65.5 |
| MS.gene22153.t1 | AT1G69540 | 43.056 | 72 | 39 | 2 | 1 | 72 | 1 | 70 | 1.06e-12 | 65.5 |
| MS.gene22153.t1 | AT2G24840 | 30.000 | 140 | 88 | 3 | 1 | 130 | 62 | 201 | 3.77e-12 | 63.2 |
| MS.gene22153.t1 | AT1G28460 | 44.118 | 68 | 38 | 0 | 2 | 69 | 8 | 75 | 5.10e-11 | 58.9 |
| MS.gene22153.t1 | AT1G29962 | 42.647 | 68 | 39 | 0 | 2 | 69 | 8 | 75 | 5.50e-11 | 58.9 |
| MS.gene22153.t1 | AT5G60910 | 44.615 | 65 | 36 | 0 | 62 | 126 | 48 | 112 | 6.26e-11 | 58.5 |
Find 36 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAATAGTACATTGCAAAT+TGG | 0.210363 | 3.4:-42149326 | MS.gene22153:CDS |
| TCACCCTGTAGGAACTTTCT+TGG | 0.302878 | 3.4:-42154090 | MS.gene22153:intron |
| GAACTTTCTTGGAGAAGAAT+TGG | 0.314870 | 3.4:-42154079 | MS.gene22153:CDS |
| GTTTGACCTGATTGTCTTCA+AGG | 0.326548 | 3.4:+42154005 | None:intergenic |
| GCAATAGTACATTGCAAATT+GGG | 0.337564 | 3.4:-42149325 | MS.gene22153:intron |
| ACATTTGCAAAGAGAAGAAA+TGG | 0.365480 | 3.4:-42186105 | MS.gene22153:CDS |
| TAATAATATTCTGAGGAATA+AGG | 0.369120 | 3.4:-42152637 | MS.gene22153:intron |
| ACTCTTCCTTGAAGACAATC+AGG | 0.408503 | 3.4:-42154011 | MS.gene22153:CDS |
| GCATATGCTTGATCAACTTA+AGG | 0.414052 | 3.4:-42152781 | MS.gene22153:CDS |
| TCTCTACAGCTACAATTCTT+CGG | 0.421665 | 3.4:-42149240 | MS.gene22153:intron |
| TGCTCACTAGATTCCCATGC+TGG | 0.435466 | 3.4:+42149407 | None:intergenic |
| AAGCAATAAAATAATGGGTA+GGG | 0.438614 | 3.4:-42186175 | None:intergenic |
| TGGAGAAGAATTGGAGCAGT+TGG | 0.442612 | 3.4:-42154070 | MS.gene22153:CDS |
| GGGGAAAGGTAGAGCTAAAG+AGG | 0.465681 | 3.4:-42186155 | MS.gene22153:CDS |
| TTGGTGAGGGTGGCCGCTAT+AGG | 0.471675 | 3.4:+42149376 | None:intergenic |
| TCTCAAAGTATCCCTCTGAT+TGG | 0.474526 | 3.4:+42149357 | None:intergenic |
| TAGATTCCCATGCTGGTTGA+AGG | 0.481233 | 3.4:+42149414 | None:intergenic |
| ATGAGTTCTGCAGTGGCACT+AGG | 0.499533 | 3.4:-42185999 | MS.gene22153:intron |
| AAAGCAATAAAATAATGGGT+AGG | 0.518687 | 3.4:-42186176 | None:intergenic |
| TAAAATAATGGGTAGGGGAA+AGG | 0.519037 | 3.4:-42186169 | None:intergenic |
| AGCAATAAAATAATGGGTAG+GGG | 0.548277 | 3.4:-42186174 | None:intergenic |
| ATGTGATCCTTCAACCAGCA+TGG | 0.565805 | 3.4:-42149421 | MS.gene22153:CDS |
| TGTGATCCTTCAACCAGCAT+GGG | 0.585052 | 3.4:-42149420 | MS.gene22153:CDS |
| AAGAAATGGGATGCTCAAGA+AGG | 0.586753 | 3.4:-42186091 | MS.gene22153:CDS |
| AAGTATCCCTCTGATTGGTG+AGG | 0.600593 | 3.4:+42149362 | None:intergenic |
| ATCCCTCTGATTGGTGAGGG+TGG | 0.605668 | 3.4:+42149366 | None:intergenic |
| CATTTGCAAAGAGAAGAAAT+GGG | 0.608010 | 3.4:-42186104 | MS.gene22153:CDS |
| CGGCCACCCTCACCAATCAG+AGG | 0.609607 | 3.4:-42149369 | MS.gene22153:CDS |
| AGTATCCCTCTGATTGGTGA+GGG | 0.616239 | 3.4:+42149363 | None:intergenic |
| GAAGACAATCAGGTCAAACA+AGG | 0.622192 | 3.4:-42154001 | MS.gene22153:intron |
| TAGAAACTAATAATATTCTG+AGG | 0.626809 | 3.4:-42152644 | MS.gene22153:CDS |
| GGCCACCCTCACCAATCAGA+GGG | 0.631465 | 3.4:-42149368 | MS.gene22153:CDS |
| GAGCAAAATGCAACCTATAG+CGG | 0.636401 | 3.4:-42149389 | MS.gene22153:CDS |
| AAGCTCTATGAGTTCTGCAG+TGG | 0.649168 | 3.4:-42186006 | MS.gene22153:CDS |
| GAGCAACTTCAGCTTCACAA+AGG | 0.690983 | 3.4:+42186052 | None:intergenic |
| AGAACTCATAGAGCTTTCCA+CGG | 0.694795 | 3.4:+42186013 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 42149225 | 42186184 | 42149225 | ID=MS.gene22153 |
| chr3.4 | mRNA | 42149225 | 42186184 | 42149225 | ID=MS.gene22153.t1;Parent=MS.gene22153 |
| chr3.4 | exon | 42186000 | 42186184 | 42186000 | ID=MS.gene22153.t1.exon1;Parent=MS.gene22153.t1 |
| chr3.4 | CDS | 42186000 | 42186184 | 42186000 | ID=cds.MS.gene22153.t1;Parent=MS.gene22153.t1 |
| chr3.4 | exon | 42154002 | 42154101 | 42154002 | ID=MS.gene22153.t1.exon2;Parent=MS.gene22153.t1 |
| chr3.4 | CDS | 42154002 | 42154101 | 42154002 | ID=cds.MS.gene22153.t1;Parent=MS.gene22153.t1 |
| chr3.4 | exon | 42152767 | 42152808 | 42152767 | ID=MS.gene22153.t1.exon3;Parent=MS.gene22153.t1 |
| chr3.4 | CDS | 42152767 | 42152808 | 42152767 | ID=cds.MS.gene22153.t1;Parent=MS.gene22153.t1 |
| chr3.4 | exon | 42152638 | 42152679 | 42152638 | ID=MS.gene22153.t1.exon4;Parent=MS.gene22153.t1 |
| chr3.4 | CDS | 42152638 | 42152679 | 42152638 | ID=cds.MS.gene22153.t1;Parent=MS.gene22153.t1 |
| chr3.4 | exon | 42149326 | 42149456 | 42149326 | ID=MS.gene22153.t1.exon5;Parent=MS.gene22153.t1 |
| chr3.4 | CDS | 42149326 | 42149456 | 42149326 | ID=cds.MS.gene22153.t1;Parent=MS.gene22153.t1 |
| chr3.4 | exon | 42149225 | 42149253 | 42149225 | ID=MS.gene22153.t1.exon6;Parent=MS.gene22153.t1 |
| chr3.4 | CDS | 42149225 | 42149253 | 42149225 | ID=cds.MS.gene22153.t1;Parent=MS.gene22153.t1 |
| Gene Sequence |
| Protein sequence |
