Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22211.t1 | XP_004516894.1 | 74.2 | 194 | 50 | 0 | 5 | 198 | 189 | 382 | 2.40E-74 | 288.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22211.t1 | A0A1S2Z8D8 | 74.2 | 194 | 50 | 0 | 5 | 198 | 189 | 382 | 1.7e-74 | 288.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene22211.t1 | TR | mTERF |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22211.t1 | MTR_3g450500 | 72.680 | 194 | 53 | 0 | 5 | 198 | 182 | 375 | 1.38e-96 | 285 |
| MS.gene22211.t1 | MTR_4g007490 | 70.466 | 193 | 57 | 0 | 6 | 198 | 181 | 373 | 4.86e-95 | 281 |
| MS.gene22211.t1 | MTR_2g019810 | 40.415 | 193 | 111 | 3 | 2 | 193 | 168 | 357 | 6.12e-38 | 134 |
| MS.gene22211.t1 | MTR_2g019840 | 40.104 | 192 | 111 | 3 | 5 | 195 | 183 | 371 | 5.95e-37 | 132 |
| MS.gene22211.t1 | MTR_2g437260 | 35.385 | 195 | 126 | 0 | 2 | 196 | 173 | 367 | 4.51e-33 | 122 |
| MS.gene22211.t1 | MTR_2g436460 | 34.694 | 196 | 125 | 2 | 2 | 196 | 184 | 377 | 6.57e-33 | 121 |
| MS.gene22211.t1 | MTR_4g119550 | 34.375 | 192 | 124 | 1 | 6 | 197 | 193 | 382 | 1.31e-32 | 120 |
| MS.gene22211.t1 | MTR_2g437240 | 34.848 | 198 | 125 | 2 | 3 | 198 | 208 | 403 | 2.76e-32 | 120 |
| MS.gene22211.t1 | MTR_2g436400 | 37.037 | 189 | 117 | 1 | 5 | 193 | 189 | 375 | 1.25e-31 | 118 |
| MS.gene22211.t1 | MTR_2g437030 | 38.660 | 194 | 115 | 3 | 5 | 197 | 268 | 458 | 2.75e-31 | 118 |
| MS.gene22211.t1 | MTR_2g437040 | 34.197 | 193 | 125 | 1 | 5 | 197 | 182 | 372 | 5.07e-31 | 116 |
| MS.gene22211.t1 | MTR_4g119580 | 34.211 | 190 | 123 | 1 | 6 | 195 | 185 | 372 | 7.72e-31 | 115 |
| MS.gene22211.t1 | MTR_2g437080 | 35.678 | 199 | 114 | 2 | 5 | 197 | 182 | 372 | 1.10e-30 | 115 |
| MS.gene22211.t1 | MTR_2g436440 | 35.417 | 192 | 122 | 1 | 6 | 197 | 189 | 378 | 2.04e-30 | 115 |
| MS.gene22211.t1 | MTR_2g437090 | 35.849 | 159 | 102 | 0 | 39 | 197 | 2 | 160 | 2.42e-30 | 109 |
| MS.gene22211.t1 | MTR_2g437100 | 35.106 | 188 | 120 | 1 | 6 | 193 | 208 | 393 | 4.78e-30 | 114 |
| MS.gene22211.t1 | MTR_2g437160 | 34.031 | 191 | 124 | 1 | 6 | 196 | 208 | 396 | 5.42e-30 | 114 |
| MS.gene22211.t1 | MTR_2g437150 | 34.031 | 191 | 124 | 1 | 6 | 196 | 203 | 391 | 3.58e-29 | 112 |
| MS.gene22211.t1 | MTR_2g437160 | 32.353 | 204 | 124 | 3 | 7 | 196 | 102 | 305 | 3.66e-28 | 107 |
| MS.gene22211.t1 | MTR_2g438020 | 32.984 | 191 | 126 | 1 | 6 | 196 | 250 | 438 | 5.77e-28 | 109 |
| MS.gene22211.t1 | MTR_2g437170 | 32.812 | 192 | 127 | 1 | 5 | 196 | 202 | 391 | 8.78e-28 | 108 |
| MS.gene22211.t1 | MTR_2g437200 | 34.574 | 188 | 121 | 1 | 6 | 193 | 211 | 396 | 1.06e-27 | 107 |
| MS.gene22211.t1 | MTR_2g437020 | 37.736 | 159 | 98 | 1 | 31 | 188 | 206 | 364 | 9.20e-27 | 105 |
| MS.gene22211.t1 | MTR_4g120380 | 31.746 | 189 | 127 | 1 | 6 | 194 | 185 | 371 | 2.73e-26 | 103 |
| MS.gene22211.t1 | MTR_2g437180 | 32.984 | 191 | 124 | 2 | 6 | 196 | 195 | 381 | 3.82e-26 | 103 |
| MS.gene22211.t1 | MTR_2g437060 | 34.896 | 192 | 123 | 2 | 5 | 196 | 197 | 386 | 4.98e-26 | 103 |
| MS.gene22211.t1 | MTR_8g081000 | 28.947 | 190 | 135 | 0 | 6 | 195 | 198 | 387 | 1.01e-25 | 102 |
| MS.gene22211.t1 | MTR_8g081000 | 28.947 | 190 | 135 | 0 | 6 | 195 | 198 | 387 | 1.03e-25 | 102 |
| MS.gene22211.t1 | MTR_8g081000 | 28.947 | 190 | 135 | 0 | 6 | 195 | 198 | 387 | 1.23e-25 | 102 |
| MS.gene22211.t1 | MTR_2g437960 | 31.016 | 187 | 127 | 1 | 6 | 192 | 199 | 383 | 3.32e-25 | 101 |
| MS.gene22211.t1 | MTR_2g437120 | 32.461 | 191 | 126 | 2 | 6 | 196 | 197 | 384 | 4.17e-25 | 101 |
| MS.gene22211.t1 | MTR_2g437960 | 31.016 | 187 | 127 | 1 | 6 | 192 | 199 | 383 | 4.48e-25 | 101 |
| MS.gene22211.t1 | MTR_2g437130 | 31.250 | 192 | 130 | 1 | 6 | 197 | 184 | 373 | 3.62e-24 | 98.2 |
| MS.gene22211.t1 | MTR_8g080990 | 31.088 | 193 | 133 | 0 | 6 | 198 | 185 | 377 | 4.17e-24 | 97.8 |
| MS.gene22211.t1 | MTR_2g437990 | 31.414 | 191 | 129 | 1 | 6 | 196 | 195 | 383 | 1.89e-23 | 96.7 |
| MS.gene22211.t1 | MTR_2g437940 | 30.256 | 195 | 134 | 1 | 2 | 196 | 163 | 355 | 1.83e-22 | 93.6 |
| MS.gene22211.t1 | MTR_2g076320 | 30.890 | 191 | 130 | 1 | 6 | 196 | 196 | 384 | 1.10e-21 | 91.7 |
| MS.gene22211.t1 | MTR_4g120380 | 30.952 | 168 | 114 | 1 | 6 | 173 | 185 | 350 | 2.19e-21 | 90.9 |
| MS.gene22211.t1 | MTR_2g438010 | 29.167 | 192 | 134 | 2 | 5 | 196 | 215 | 404 | 3.73e-21 | 90.1 |
| MS.gene22211.t1 | MTR_4g119570 | 29.474 | 190 | 99 | 2 | 6 | 195 | 77 | 231 | 6.33e-20 | 84.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22211.t1 | AT5G07900 | 39.896 | 193 | 115 | 1 | 3 | 194 | 209 | 401 | 6.19e-47 | 159 |
| MS.gene22211.t1 | AT1G21150 | 35.294 | 187 | 120 | 1 | 7 | 192 | 164 | 350 | 3.69e-35 | 127 |
| MS.gene22211.t1 | AT1G21150 | 35.294 | 187 | 120 | 1 | 7 | 192 | 200 | 386 | 8.05e-35 | 127 |
| MS.gene22211.t1 | AT1G21150 | 35.294 | 187 | 120 | 1 | 7 | 192 | 264 | 450 | 2.01e-34 | 127 |
| MS.gene22211.t1 | AT1G62010 | 27.854 | 219 | 121 | 3 | 5 | 187 | 175 | 392 | 3.50e-22 | 93.2 |
| MS.gene22211.t1 | AT1G61980 | 28.440 | 218 | 119 | 5 | 5 | 186 | 191 | 407 | 1.14e-18 | 83.2 |
| MS.gene22211.t1 | AT1G61980 | 28.440 | 218 | 119 | 5 | 5 | 186 | 191 | 407 | 1.14e-18 | 83.2 |
| MS.gene22211.t1 | AT1G61980 | 28.440 | 218 | 119 | 5 | 5 | 186 | 191 | 407 | 1.14e-18 | 83.2 |
| MS.gene22211.t1 | AT1G61970 | 27.273 | 220 | 121 | 6 | 5 | 187 | 191 | 408 | 1.95e-18 | 82.8 |
| MS.gene22211.t1 | AT1G61970 | 27.273 | 220 | 121 | 6 | 5 | 187 | 191 | 408 | 1.95e-18 | 82.8 |
| MS.gene22211.t1 | AT1G61970 | 27.273 | 220 | 121 | 6 | 5 | 187 | 191 | 408 | 1.95e-18 | 82.8 |
| MS.gene22211.t1 | AT1G61970 | 27.273 | 220 | 121 | 6 | 5 | 187 | 191 | 408 | 1.95e-18 | 82.8 |
| MS.gene22211.t1 | AT1G61970 | 27.273 | 220 | 121 | 6 | 5 | 187 | 191 | 408 | 1.95e-18 | 82.8 |
| MS.gene22211.t1 | AT1G61970 | 27.273 | 220 | 121 | 6 | 5 | 187 | 191 | 408 | 1.95e-18 | 82.8 |
| MS.gene22211.t1 | AT1G61970 | 27.273 | 220 | 121 | 6 | 5 | 187 | 191 | 408 | 1.95e-18 | 82.8 |
| MS.gene22211.t1 | AT5G64950 | 27.273 | 198 | 139 | 2 | 1 | 193 | 179 | 376 | 2.24e-18 | 82.4 |
| MS.gene22211.t1 | AT1G61990 | 26.180 | 233 | 132 | 4 | 4 | 197 | 183 | 414 | 1.87e-17 | 79.7 |
| MS.gene22211.t1 | AT1G61990 | 26.180 | 233 | 132 | 4 | 4 | 197 | 183 | 414 | 1.87e-17 | 79.7 |
| MS.gene22211.t1 | AT1G62110 | 34.752 | 141 | 84 | 4 | 5 | 140 | 193 | 330 | 5.33e-17 | 78.6 |
| MS.gene22211.t1 | AT1G62120 | 26.364 | 220 | 123 | 4 | 5 | 187 | 197 | 414 | 1.34e-16 | 77.4 |
| MS.gene22211.t1 | AT3G46950 | 38.525 | 122 | 71 | 3 | 5 | 125 | 187 | 305 | 6.40e-15 | 72.8 |
| MS.gene22211.t1 | AT1G62085 | 34.043 | 141 | 85 | 4 | 5 | 140 | 196 | 333 | 1.02e-14 | 72.0 |
| MS.gene22211.t1 | AT1G62085 | 34.043 | 141 | 85 | 4 | 5 | 140 | 196 | 333 | 1.02e-14 | 72.0 |
| MS.gene22211.t1 | AT1G62150 | 31.081 | 148 | 94 | 4 | 5 | 152 | 199 | 338 | 6.01e-13 | 67.0 |
| MS.gene22211.t1 | AT1G62150 | 24.352 | 193 | 136 | 3 | 3 | 189 | 265 | 453 | 4.25e-11 | 61.6 |
| MS.gene22211.t1 | AT1G61960 | 25.660 | 265 | 121 | 7 | 5 | 195 | 192 | 454 | 7.59e-13 | 66.6 |
| MS.gene22211.t1 | AT5G23930 | 25.301 | 249 | 115 | 4 | 5 | 183 | 189 | 436 | 8.26e-12 | 63.5 |
Find 36 sgRNAs with CRISPR-Local
Find 72 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAAGACGCACTTCTGTTAT+TGG | 0.151097 | 3.4:-40450483 | MS.gene22211:CDS |
| GTCGAGAGATTTATGTCTTT+TGG | 0.222055 | 3.4:-40450777 | MS.gene22211:CDS |
| TCAAGGTTCCATTTCCCTTT+TGG | 0.244439 | 3.4:-40450981 | MS.gene22211:CDS |
| TATGAAAACAATGAACTTCT+TGG | 0.276128 | 3.4:-40450708 | MS.gene22211:CDS |
| CTGTTATTGGATGCATATAA+AGG | 0.351180 | 3.4:-40450470 | MS.gene22211:CDS |
| GTTAATTCAGTCAAAGAAAT+GGG | 0.353526 | 3.4:-40450905 | MS.gene22211:CDS |
| CAAGCATTCTAGATTTGTTA+AGG | 0.370113 | 3.4:-40450930 | MS.gene22211:CDS |
| ATTGTATACCAAAAGGGAAA+TGG | 0.395580 | 3.4:+40450973 | None:intergenic |
| AGAAGACACTTATCCCTAGA+TGG | 0.395958 | 3.4:-40450619 | MS.gene22211:CDS |
| GTTCAGAATCCCGGGCCATC+TGG | 0.397586 | 3.4:+40450652 | None:intergenic |
| TGTTAATTCAGTCAAAGAAA+TGG | 0.398595 | 3.4:-40450906 | MS.gene22211:CDS |
| ATCTTAACAACTGCCCATCT+AGG | 0.399292 | 3.4:+40450605 | None:intergenic |
| TGGGAAAATTGTATACCAAA+AGG | 0.432816 | 3.4:+40450966 | None:intergenic |
| GAAGACATTGCCAGATGGCC+CGG | 0.434278 | 3.4:-40450662 | MS.gene22211:CDS |
| CAAGTTGCGGTTCAGAATCC+CGG | 0.446814 | 3.4:+40450643 | None:intergenic |
| CGGGATTCTGAACCGCAACT+TGG | 0.464726 | 3.4:-40450642 | MS.gene22211:CDS |
| CTTAACAAATCTAGAATGCT+TGG | 0.481915 | 3.4:+40450931 | None:intergenic |
| GGGAAAATTGTATACCAAAA+GGG | 0.484648 | 3.4:+40450967 | None:intergenic |
| AGGAAGCTTGGTGTGCCTCA+AGG | 0.500306 | 3.4:-40450998 | MS.gene22211:CDS |
| TCTTAACAACTGCCCATCTA+GGG | 0.515531 | 3.4:+40450606 | None:intergenic |
| CTAGCATGAACAAAGAGACT+TGG | 0.517246 | 3.4:-40450835 | MS.gene22211:CDS |
| TGATGCAGTTCAGAATATTG+AGG | 0.524450 | 3.4:-40451026 | MS.gene22211:intron |
| AAGTTGCGGTTCAGAATCCC+GGG | 0.557152 | 3.4:+40450644 | None:intergenic |
| AAGACATTGCCAGATGGCCC+GGG | 0.562060 | 3.4:-40450661 | MS.gene22211:CDS |
| GAAGACACTTATCCCTAGAT+GGG | 0.579858 | 3.4:-40450618 | MS.gene22211:CDS |
| TGCTTGGCGAATGCTACAGT+GGG | 0.584692 | 3.4:+40450947 | None:intergenic |
| AACTTCTTGGTGAATGATGT+GGG | 0.587875 | 3.4:-40450695 | MS.gene22211:CDS |
| TAGCATGAACAAAGAGACTT+GGG | 0.602698 | 3.4:-40450834 | MS.gene22211:CDS |
| CGCAAGAAGACATTGCCAGA+TGG | 0.603186 | 3.4:-40450667 | MS.gene22211:CDS |
| GAACTTCTTGGTGAATGATG+TGG | 0.604661 | 3.4:-40450696 | MS.gene22211:CDS |
| TTAATTCAGTCAAAGAAATG+GGG | 0.606609 | 3.4:-40450904 | MS.gene22211:CDS |
| ATGCTTGGCGAATGCTACAG+TGG | 0.637179 | 3.4:+40450946 | None:intergenic |
| TTTCTCACTAATCGAAATAG+CGG | 0.637691 | 3.4:+40450538 | None:intergenic |
| TCTGAGATCATCACAAACTG+AGG | 0.650346 | 3.4:+40450740 | None:intergenic |
| TAAGTGTCTTCTCCAAGTTG+CGG | 0.658300 | 3.4:+40450630 | None:intergenic |
| AAAAGGGAAATGGAACCTTG+AGG | 0.747491 | 3.4:+40450983 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTAAGATTTTGAATTCAAA+AGG | - | chr3.4:40451145-40451164 | MS.gene22211:intron | 20.0% |
| !!! | TAATTTTTTGAGATTAAGCT+TGG | - | chr3.4:40450586-40450605 | MS.gene22211:CDS | 20.0% |
| ! | AAAAATTGAGTTTAGGCAAA+AGG | + | chr3.4:40450511-40450530 | None:intergenic | 25.0% |
| ! | AAAACAAAAAAAGACTTGGA+AGG | + | chr3.4:40450863-40450882 | None:intergenic | 25.0% |
| ! | AAAATTGAGTTTAGGCAAAA+GGG | + | chr3.4:40450510-40450529 | None:intergenic | 25.0% |
| ! | GATTGCAAAAAATTGAGTTT+AGG | + | chr3.4:40450518-40450537 | None:intergenic | 25.0% |
| ! | GTTAATTCAGTCAAAGAAAT+GGG | - | chr3.4:40450830-40450849 | MS.gene22211:CDS | 25.0% |
| ! | TATGAAAACAATGAACTTCT+TGG | - | chr3.4:40451027-40451046 | MS.gene22211:intron | 25.0% |
| ! | TGTTAATTCAGTCAAAGAAA+TGG | - | chr3.4:40450829-40450848 | MS.gene22211:CDS | 25.0% |
| ! | TTAATTCAGTCAAAGAAATG+GGG | - | chr3.4:40450831-40450850 | MS.gene22211:CDS | 25.0% |
| !! | ATCAAGATTCAAGATTTTTC+AGG | - | chr3.4:40450925-40450944 | MS.gene22211:CDS | 25.0% |
| !! | GATTAGTGAGAAAATGTTTT+TGG | - | chr3.4:40451207-40451226 | MS.gene22211:intron | 25.0% |
| !! | TCAAGATTCAAGATTTTTCA+GGG | - | chr3.4:40450926-40450945 | MS.gene22211:CDS | 25.0% |
| !!! | AGTGTTACTGATTAGTATTT+TGG | + | chr3.4:40450567-40450586 | None:intergenic | 25.0% |
| !!! | GTGTTACTGATTAGTATTTT+GGG | + | chr3.4:40450566-40450585 | None:intergenic | 25.0% |
| !!! | GTTTTGATAAAAGCACAAAA+GGG | + | chr3.4:40450478-40450497 | None:intergenic | 25.0% |
| !!! | TCAATTTTTTGCAATCCATT+GGG | - | chr3.4:40450522-40450541 | MS.gene22211:CDS | 25.0% |
| !!! | TGTTACTGATTAGTATTTTG+GGG | + | chr3.4:40450565-40450584 | None:intergenic | 25.0% |
| !!! | TTCCAAGTCTTTTTTTGTTT+TGG | - | chr3.4:40450862-40450881 | MS.gene22211:CDS | 25.0% |
| ATTGTATACCAAAAGGGAAA+TGG | + | chr3.4:40450765-40450784 | None:intergenic | 30.0% | |
| CTGTTATTGGATGCATATAA+AGG | - | chr3.4:40451265-40451284 | MS.gene22211:intron | 30.0% | |
| GGGAAAATTGTATACCAAAA+GGG | + | chr3.4:40450771-40450790 | None:intergenic | 30.0% | |
| TGCCAAAACAAAAAAAGACT+TGG | + | chr3.4:40450867-40450886 | None:intergenic | 30.0% | |
| TGGGAAAATTGTATACCAAA+AGG | + | chr3.4:40450772-40450791 | None:intergenic | 30.0% | |
| TTTCTCACTAATCGAAATAG+CGG | + | chr3.4:40451200-40451219 | None:intergenic | 30.0% | |
| ! | CTTAACAAATCTAGAATGCT+TGG | + | chr3.4:40450807-40450826 | None:intergenic | 30.0% |
| ! | TTCAGAATATTGAGGTTTTG+AGG | - | chr3.4:40450717-40450736 | MS.gene22211:CDS | 30.0% |
| !! | CAAGATTCAAGATTTTTCAG+GGG | - | chr3.4:40450927-40450946 | MS.gene22211:CDS | 30.0% |
| !! | CAAGCATTCTAGATTTGTTA+AGG | - | chr3.4:40450805-40450824 | MS.gene22211:CDS | 30.0% |
| !! | GGTTTTGATAAAAGCACAAA+AGG | + | chr3.4:40450479-40450498 | None:intergenic | 30.0% |
| !!! | CAATTTTTTGCAATCCATTG+GGG | - | chr3.4:40450523-40450542 | MS.gene22211:CDS | 30.0% |
| !!! | CTCAATTTTTTGCAATCCAT+TGG | - | chr3.4:40450521-40450540 | MS.gene22211:CDS | 30.0% |
| AACTTCTTGGTGAATGATGT+GGG | - | chr3.4:40451040-40451059 | MS.gene22211:intron | 35.0% | |
| TAGCATGAACAAAGAGACTT+GGG | - | chr3.4:40450901-40450920 | MS.gene22211:CDS | 35.0% | |
| TATAGTTCGCAATGACAAAG+AGG | - | chr3.4:40450646-40450665 | MS.gene22211:CDS | 35.0% | |
| TGATGCAGTTCAGAATATTG+AGG | - | chr3.4:40450709-40450728 | MS.gene22211:CDS | 35.0% | |
| ! | GTCGAGAGATTTATGTCTTT+TGG | - | chr3.4:40450958-40450977 | MS.gene22211:CDS | 35.0% |
| ! | TCACAAACTGAGGACATTTT+TGG | + | chr3.4:40450988-40451007 | None:intergenic | 35.0% |
| !!! | ATTCAAGATTTTTCAGGGGT+GGG | - | chr3.4:40450931-40450950 | MS.gene22211:CDS | 35.0% |
| AAAAGGGAAATGGAACCTTG+AGG | + | chr3.4:40450755-40450774 | None:intergenic | 40.0% | |
| AGAAGACACTTATCCCTAGA+TGG | - | chr3.4:40451116-40451135 | MS.gene22211:intron | 40.0% | |
| AGAAGACGCACTTCTGTTAT+TGG | - | chr3.4:40451252-40451271 | MS.gene22211:intron | 40.0% | |
| ATCTTAACAACTGCCCATCT+AGG | + | chr3.4:40451133-40451152 | None:intergenic | 40.0% | |
| CTAGCATGAACAAAGAGACT+TGG | - | chr3.4:40450900-40450919 | MS.gene22211:CDS | 40.0% | |
| CTTCTAATGACATCATAGCG+AGG | + | chr3.4:40450626-40450645 | None:intergenic | 40.0% | |
| GAACTTCTTGGTGAATGATG+TGG | - | chr3.4:40451039-40451058 | MS.gene22211:intron | 40.0% | |
| GAAGACACTTATCCCTAGAT+GGG | - | chr3.4:40451117-40451136 | MS.gene22211:intron | 40.0% | |
| GACATCATAGCGAGGAATAA+TGG | + | chr3.4:40450618-40450637 | None:intergenic | 40.0% | |
| TAAGTGTCTTCTCCAAGTTG+CGG | + | chr3.4:40451108-40451127 | None:intergenic | 40.0% | |
| TCTTAACAACTGCCCATCTA+GGG | + | chr3.4:40451132-40451151 | None:intergenic | 40.0% | |
| ! | TCAAGGTTCCATTTCCCTTT+TGG | - | chr3.4:40450754-40450773 | MS.gene22211:CDS | 40.0% |
| ! | TCTGAGATCATCACAAACTG+AGG | + | chr3.4:40450998-40451017 | None:intergenic | 40.0% |
| ! | TTAGGCAAAAGGGTCTTTTC+AGG | + | chr3.4:40450500-40450519 | None:intergenic | 40.0% |
| !! | GTAGTTTCAACTTTGAAGCG+TGG | - | chr3.4:40450668-40450687 | MS.gene22211:CDS | 40.0% |
| !! | TAGTATTTTGGGGAGATCAG+TGG | + | chr3.4:40450555-40450574 | None:intergenic | 40.0% |
| !!! | ATTGAGGTTTTGAGGAAGCT+TGG | - | chr3.4:40450725-40450744 | MS.gene22211:CDS | 40.0% |
| !!! | GATTCAAGATTTTTCAGGGG+TGG | - | chr3.4:40450930-40450949 | MS.gene22211:CDS | 40.0% |
| !!! | TTCAAGATTTTTCAGGGGTG+GGG | - | chr3.4:40450932-40450951 | MS.gene22211:CDS | 40.0% |
| ATCAGTGGTTGAAACCCCAA+TGG | + | chr3.4:40450540-40450559 | None:intergenic | 45.0% | |
| ! | TTTGAAGCGTGGAACTAGCT+GGG | - | chr3.4:40450679-40450698 | MS.gene22211:CDS | 45.0% |
| AAGTTGCGGTTCAGAATCCC+GGG | + | chr3.4:40451094-40451113 | None:intergenic | 50.0% | |
| ATGCTTGGCGAATGCTACAG+TGG | + | chr3.4:40450792-40450811 | None:intergenic | 50.0% | |
| CAAGTTGCGGTTCAGAATCC+CGG | + | chr3.4:40451095-40451114 | None:intergenic | 50.0% | |
| CGCAAGAAGACATTGCCAGA+TGG | - | chr3.4:40451068-40451087 | MS.gene22211:intron | 50.0% | |
| TGCTTGGCGAATGCTACAGT+GGG | + | chr3.4:40450791-40450810 | None:intergenic | 50.0% | |
| !! | CTTTGAAGCGTGGAACTAGC+TGG | - | chr3.4:40450678-40450697 | MS.gene22211:CDS | 50.0% |
| !!! | AGATTTTTCAGGGGTGGGGA+TGG | - | chr3.4:40450936-40450955 | MS.gene22211:CDS | 50.0% |
| AAGACATTGCCAGATGGCCC+GGG | - | chr3.4:40451074-40451093 | MS.gene22211:intron | 55.0% | |
| CGGGATTCTGAACCGCAACT+TGG | - | chr3.4:40451093-40451112 | MS.gene22211:intron | 55.0% | |
| GAAGACATTGCCAGATGGCC+CGG | - | chr3.4:40451073-40451092 | MS.gene22211:intron | 55.0% | |
| !! | AGGAAGCTTGGTGTGCCTCA+AGG | - | chr3.4:40450737-40450756 | MS.gene22211:CDS | 55.0% |
| GTTCAGAATCCCGGGCCATC+TGG | + | chr3.4:40451086-40451105 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 40450454 | 40451303 | 40450454 | ID=MS.gene22211 |
| chr3.4 | mRNA | 40450454 | 40451303 | 40450454 | ID=MS.gene22211.t1;Parent=MS.gene22211 |
| chr3.4 | exon | 40451294 | 40451303 | 40451294 | ID=MS.gene22211.t1.exon1;Parent=MS.gene22211.t1 |
| chr3.4 | CDS | 40451294 | 40451303 | 40451294 | ID=cds.MS.gene22211.t1;Parent=MS.gene22211.t1 |
| chr3.4 | exon | 40450454 | 40451040 | 40450454 | ID=MS.gene22211.t1.exon2;Parent=MS.gene22211.t1 |
| chr3.4 | CDS | 40450454 | 40451040 | 40450454 | ID=cds.MS.gene22211.t1;Parent=MS.gene22211.t1 |
| Gene Sequence |
| Protein sequence |
