AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene22429

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene22429.t1 MTR_7g101280 95.098 612 29 1 1 612 1 611 0.0 1222
MS.gene22429.t1 MTR_0041s0110 95.098 612 29 1 1 612 1 611 0.0 1222
MS.gene22429.t1 MTR_1g064430 54.531 618 247 12 22 619 31 634 0.0 620
MS.gene22429.t1 MTR_1g064430 54.531 618 247 12 22 619 18 621 0.0 620
MS.gene22429.t1 MTR_0041s0120 82.102 352 29 1 40 391 1 318 0.0 606
MS.gene22429.t1 MTR_0041s0120 81.818 110 18 2 489 598 310 417 6.01e-51 182
MS.gene22429.t1 MTR_7g101275 76.705 352 36 1 40 391 1 306 0.0 557
MS.gene22429.t1 MTR_7g101275 81.818 110 18 2 489 598 298 405 3.79e-51 182
MS.gene22429.t1 MTR_2g094570 52.321 560 230 12 11 555 44 581 0.0 546
MS.gene22429.t1 MTR_2g094570 52.834 547 224 11 21 555 1 525 0.0 543
MS.gene22429.t1 MTR_2g094570 52.834 547 224 11 21 555 1 525 0.0 541
MS.gene22429.t1 MTR_4g058930 54.461 538 226 10 28 555 9 537 0.0 538
MS.gene22429.t1 MTR_4g058930 54.461 538 226 10 28 555 9 537 0.0 537
MS.gene22429.t1 MTR_1g094960 49.313 582 232 17 22 566 10 565 1.94e-168 494
MS.gene22429.t1 MTR_3g073420 41.825 526 252 18 27 537 15 501 4.53e-115 356
MS.gene22429.t1 MTR_5g061220 39.612 515 227 17 26 513 14 471 1.30e-98 311
MS.gene22429.t1 MTR_5g040880 33.159 573 256 18 26 556 6 493 7.55e-83 270
MS.gene22429.t1 MTR_2g024430 38.406 414 176 12 28 430 17 362 3.00e-79 260
MS.gene22429.t1 MTR_5g082140 35.991 439 205 10 26 452 7 381 4.71e-77 253
MS.gene22429.t1 MTR_1g024025 33.693 463 229 12 24 462 36 444 4.36e-70 247
MS.gene22429.t1 MTR_4g088210 38.422 393 179 11 27 406 34 376 3.52e-69 238
MS.gene22429.t1 MTR_4g088210 38.422 393 179 11 27 406 34 376 4.78e-69 238
MS.gene22429.t1 MTR_1g058210 32.877 438 226 9 26 455 7 384 2.88e-68 229
MS.gene22429.t1 MTR_4g124900 33.962 424 211 9 26 438 18 383 1.25e-67 239
MS.gene22429.t1 MTR_4g124900 33.962 424 211 9 26 438 18 383 1.29e-67 239
MS.gene22429.t1 MTR_2g005240 36.000 425 213 10 23 440 15 387 1.83e-67 233
MS.gene22429.t1 MTR_2g018690 35.646 418 209 11 26 434 18 384 3.06e-66 233
MS.gene22429.t1 MTR_2g093740 35.437 412 202 10 31 427 56 418 3.44e-65 227
MS.gene22429.t1 MTR_8g100050 36.232 414 202 12 31 435 59 419 6.34e-65 227
MS.gene22429.t1 MTR_7g062540 35.507 414 203 12 31 434 14 373 8.36e-65 226
MS.gene22429.t1 MTR_2g093740 35.437 412 202 10 31 427 56 418 1.41e-64 226
MS.gene22429.t1 MTR_2g093740 35.437 412 202 10 31 427 56 418 1.97e-64 227
MS.gene22429.t1 MTR_5g076270 35.589 399 198 10 26 415 19 367 2.98e-64 227
MS.gene22429.t1 MTR_8g100050 36.232 414 202 12 31 435 59 419 3.59e-64 226
MS.gene22429.t1 MTR_3g064050 35.750 400 196 11 26 415 21 369 1.00e-63 225
MS.gene22429.t1 MTR_2g006270 34.709 412 196 15 28 430 10 357 1.49e-63 217
MS.gene22429.t1 MTR_8g079492 35.407 418 209 12 26 434 18 383 2.53e-63 225
MS.gene22429.t1 MTR_8g079492 35.407 418 209 12 26 434 18 383 2.81e-63 225
MS.gene22429.t1 MTR_2g093740 34.824 425 200 11 31 427 56 431 1.62e-61 217
MS.gene22429.t1 MTR_5g040740 34.913 401 173 12 28 414 9 335 2.83e-61 209
MS.gene22429.t1 MTR_4g060460 33.937 442 225 10 31 454 54 446 3.04e-61 218
MS.gene22429.t1 MTR_2g093740 34.353 425 202 11 31 427 56 431 6.44e-61 216
MS.gene22429.t1 MTR_2g093740 34.353 425 202 11 31 427 56 431 7.74e-61 217
MS.gene22429.t1 MTR_2g043250 36.573 391 189 9 26 408 18 357 1.08e-60 219
MS.gene22429.t1 MTR_4g060460 35.280 411 199 10 31 425 54 413 1.14e-60 216
MS.gene22429.t1 MTR_8g027440 35.280 411 204 10 25 427 23 379 8.39e-60 212
MS.gene22429.t1 MTR_8g101360 47.222 216 102 3 28 235 28 239 8.45e-57 207
MS.gene22429.t1 MTR_8g101360 38.000 100 59 3 312 409 270 368 2.11e-11 67.8
MS.gene22429.t1 MTR_4g021580 34.217 415 210 11 29 433 17 378 9.17e-57 202
MS.gene22429.t1 MTR_4g021580 34.217 415 210 11 29 433 17 378 1.82e-56 202
MS.gene22429.t1 MTR_2g014770 46.262 214 104 3 27 232 49 259 1.32e-51 188
MS.gene22429.t1 MTR_2g014770 35.455 110 66 3 298 406 282 387 2.90e-14 76.3
MS.gene22429.t1 MTR_2g014770 46.262 214 104 3 27 232 49 259 3.37e-51 188
MS.gene22429.t1 MTR_2g014770 35.455 110 66 3 298 406 282 387 2.35e-14 77.0
MS.gene22429.t1 MTR_8g079492 35.328 351 171 10 88 434 3 301 1.01e-49 185
MS.gene22429.t1 MTR_5g061890 31.671 401 191 13 28 413 9 341 3.15e-49 176
MS.gene22429.t1 MTR_5g060780 31.139 395 190 12 28 407 9 336 1.93e-48 174
MS.gene22429.t1 MTR_2g006380 32.203 413 198 17 28 430 17 357 2.23e-48 176
MS.gene22429.t1 MTR_5g460920 31.139 395 190 12 28 407 9 336 7.29e-48 173
MS.gene22429.t1 MTR_2g093740 37.124 299 138 6 131 427 38 288 7.01e-47 175
MS.gene22429.t1 MTR_2g093740 37.124 299 138 6 131 427 38 288 8.80e-47 175
MS.gene22429.t1 MTR_2g093740 35.577 312 138 7 131 427 38 301 1.91e-43 165
MS.gene22429.t1 MTR_2g093740 35.577 312 138 7 131 427 38 301 2.16e-43 166
MS.gene22429.t1 MTR_5g060630 28.107 523 248 18 26 476 7 473 9.78e-43 161
MS.gene22429.t1 MTR_5g460740 28.107 523 248 18 26 476 7 473 9.78e-43 161
MS.gene22429.t1 MTR_8g446900 30.412 388 196 14 73 454 8 327 3.24e-39 148
MS.gene22429.t1 MTR_5g062970 35.644 202 112 3 27 219 34 226 3.05e-37 139
MS.gene22429.t1 MTR_5g062960 33.889 180 92 6 301 476 1 157 3.30e-22 95.1
MS.gene22429.t1 MTR_5g060770 28.947 190 110 8 76 254 6 181 2.33e-13 72.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene22429.t1 AT4G30080 54.737 475 182 12 26 487 14 468 4.98e-167 492
MS.gene22429.t1 AT2G28350 46.777 605 263 16 26 600 5 580 3.44e-163 482
MS.gene22429.t1 AT2G28350 46.777 605 263 16 26 600 5 580 4.43e-163 483
MS.gene22429.t1 AT1G77850 38.043 552 304 10 25 563 13 539 1.13e-113 352
MS.gene22429.t1 AT1G77850 38.043 552 304 10 25 563 13 539 1.53e-113 352
MS.gene22429.t1 AT1G19850 35.784 408 193 11 15 406 34 388 1.23e-68 240
MS.gene22429.t1 AT1G19850 35.784 408 193 11 15 406 23 377 1.45e-68 239
MS.gene22429.t1 AT1G30330 35.520 442 221 12 1 434 1 386 2.20e-68 239
MS.gene22429.t1 AT1G30330 35.520 442 221 12 1 434 1 386 2.20e-68 239
MS.gene22429.t1 AT1G59750 34.489 519 270 16 31 536 22 483 1.67e-67 233
MS.gene22429.t1 AT1G30330 36.211 417 208 11 26 434 18 384 1.75e-67 237
MS.gene22429.t1 AT1G59750 34.357 521 273 17 31 536 22 488 1.83e-67 233
MS.gene22429.t1 AT1G59750 34.357 521 273 17 31 536 22 488 1.83e-67 233
MS.gene22429.t1 AT1G59750 34.674 522 267 18 31 536 22 485 4.21e-67 231
MS.gene22429.t1 AT5G62000 35.160 438 217 11 2 425 26 410 9.38e-66 231
MS.gene22429.t1 AT5G62000 35.160 438 217 11 2 425 26 410 9.38e-66 231
MS.gene22429.t1 AT5G62000 35.160 438 217 11 2 425 26 410 9.38e-66 231
MS.gene22429.t1 AT5G62000 35.160 438 217 11 2 425 26 410 9.38e-66 231
MS.gene22429.t1 AT5G62000 35.160 438 217 11 2 425 26 410 1.12e-65 231
MS.gene22429.t1 AT5G60450 34.532 417 210 10 22 424 32 399 1.55e-65 229
MS.gene22429.t1 AT5G37020 35.500 400 197 11 26 415 17 365 2.10e-65 229
MS.gene22429.t1 AT5G37020 35.500 400 197 11 26 415 17 365 2.88e-65 229
MS.gene22429.t1 AT5G60450 34.804 408 203 10 31 424 65 423 6.52e-65 228
MS.gene22429.t1 AT2G33860 32.974 464 239 14 31 475 54 464 4.98e-64 222
MS.gene22429.t1 AT3G61830 33.875 431 214 12 31 451 25 394 8.83e-61 213
MS.gene22429.t1 AT2G46530 34.456 386 187 10 31 406 21 350 6.77e-60 211
MS.gene22429.t1 AT2G46530 34.456 386 187 10 31 406 42 371 1.17e-59 210
MS.gene22429.t1 AT1G34310 34.815 405 203 9 28 427 24 372 2.94e-58 206
MS.gene22429.t1 AT1G35520 34.230 409 206 9 31 434 27 377 9.24e-58 204
MS.gene22429.t1 AT1G35240 33.902 410 206 10 31 434 27 377 2.40e-57 203
MS.gene22429.t1 AT1G34410 34.063 411 204 10 31 434 27 377 6.86e-56 200
MS.gene22429.t1 AT1G35540 33.835 399 204 9 31 424 27 370 7.54e-55 197
MS.gene22429.t1 AT1G19220 45.622 217 107 3 26 235 18 230 2.81e-54 200
MS.gene22429.t1 AT1G19220 36.220 127 78 3 312 437 261 385 6.72e-14 75.9
MS.gene22429.t1 AT5G20730 43.318 217 112 3 26 235 19 231 9.21e-53 196
MS.gene22429.t1 AT5G20730 34.375 128 80 4 312 437 262 387 5.26e-12 69.7
MS.gene22429.t1 AT5G20730 43.318 217 112 3 26 235 19 231 1.07e-52 196
MS.gene22429.t1 AT5G20730 34.375 128 80 4 312 437 262 387 4.30e-12 70.1
MS.gene22429.t1 AT5G20730 43.318 217 112 3 26 235 19 231 1.16e-52 196
MS.gene22429.t1 AT5G20730 33.858 127 81 3 312 437 262 386 6.12e-13 72.8
MS.gene22429.t1 AT4G23980 30.676 414 226 10 31 436 12 372 7.53e-51 186
MS.gene22429.t1 AT4G23980 31.343 402 215 10 31 424 12 360 8.55e-51 186
MS.gene22429.t1 AT1G34170 32.187 407 210 10 9 406 3 352 5.04e-50 181
MS.gene22429.t1 AT3G61830 34.174 357 170 10 73 425 22 317 7.40e-50 182
MS.gene22429.t1 AT1G34390 32.266 406 204 10 31 427 27 370 1.73e-47 176
MS.gene22429.t1 AT5G37020 36.934 287 132 7 131 415 31 270 3.34e-47 177
MS.gene22429.t1 AT2G33860 33.427 356 176 11 131 475 2 307 8.87e-47 171
MS.gene22429.t1 AT1G34170 30.958 407 189 10 9 406 3 326 9.83e-44 163
MS.gene22429.t1 AT1G34170 30.958 407 189 10 9 406 3 326 4.64e-43 163
MS.gene22429.t1 AT2G46530 34.173 278 132 6 130 406 36 263 1.95e-41 157
MS.gene22429.t1 AT1G43950 38.537 205 112 6 31 230 27 222 1.14e-34 131
MS.gene22429.t1 AT3G25730 26.738 187 108 4 82 254 122 293 4.86e-12 68.2
MS.gene22429.t1 AT2G46870 37.113 97 60 1 123 219 27 122 7.67e-12 67.4
MS.gene22429.t1 AT1G13260 30.882 136 75 3 118 251 175 293 8.10e-11 64.3

Find 151 sgRNAs with CRISPR-Local

Find 211 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAAAGTTGGCATTGGAAAT+TGG 0.228346 7.1:+8651776 None:intergenic
TGGAATGAAAGACGGAATTT+TGG 0.237258 7.1:+8653485 None:intergenic
CATCAACGTGTCTGAAATTA+AGG 0.241218 7.1:-8653343 MS.gene22429:CDS
TGGCCATCAATTGGGAAATC+TGG 0.249420 7.1:+8651796 None:intergenic
GGCATTTCAGGCACGTTTAT+AGG 0.250063 7.1:-8653155 MS.gene22429:CDS
GCATTTCAGGCACGTTTATA+GGG 0.272489 7.1:-8653154 MS.gene22429:CDS
CTTGTGAAAACTTCTTTAAT+TGG 0.278075 7.1:-8652718 MS.gene22429:CDS
CAGCTATGGCATGCCGTTGC+AGG 0.280375 7.1:-8653606 MS.gene22429:CDS
ATGGCGAAAAGTGGCATTTC+AGG 0.309403 7.1:-8653167 MS.gene22429:CDS
CGGAACTATTGCTTCTGTTC+AGG 0.311558 7.1:-8652608 MS.gene22429:CDS
GTTGGAGTCGATCCTTTGTT+AGG 0.313766 7.1:-8652985 MS.gene22429:CDS
CTCCCAGATTTCCCAATTGA+TGG 0.331554 7.1:-8651799 MS.gene22429:CDS
TTAGGATTTAGAAGGTTGTT+TGG 0.339574 7.1:+8651754 None:intergenic
TTCAGCTAACCCTCCTCTTC+AGG 0.348707 7.1:-8653211 MS.gene22429:CDS
TTGGAATATTAGGATTTAGA+AGG 0.349891 7.1:+8651746 None:intergenic
TTGGAATTCGGAGGGCTAAA+AGG 0.350812 7.1:-8653017 MS.gene22429:CDS
TATTATTATTAAACGGTTGT+TGG 0.355810 7.1:+8651608 None:intergenic
ATTGGAAATTGGCCATCAAT+TGG 0.356580 7.1:+8651787 None:intergenic
CATGCCGGCAGGACTAGTTT+CGG 0.360765 7.1:+8651711 None:intergenic
AGAAGGTTGTTTGGAAAAGT+TGG 0.365277 7.1:+8651763 None:intergenic
TGGAAATCTGGTAGTGGAAT+TGG 0.365957 7.1:-8652961 MS.gene22429:CDS
CTGCGAATGTTTCTTCGCAT+TGG 0.366575 7.1:+8651305 None:intergenic
CAGTGTCGACTTGTATTGTT+TGG 0.368403 7.1:+8651434 None:intergenic
AATGGAAGATTATGAAAATC+TGG 0.372719 7.1:+8651652 None:intergenic
TTTGCAATGCCAAGTTATTA+GGG 0.373972 7.1:+8651563 None:intergenic
TCAAGGATAAGTTGGTTTAT+CGG 0.374081 7.1:-8652628 MS.gene22429:CDS
GGAGCCAGGCATGGTCATTT+CGG 0.375741 7.1:-8651685 MS.gene22429:CDS
TTTGATAATGATGGTGTTGC+TGG 0.376636 7.1:-8653366 MS.gene22429:CDS
CTAACTTGGTTAATATTCAT+AGG 0.385591 7.1:+8653390 None:intergenic
AAGAGGCATTTGTTGACAAC+TGG 0.392584 7.1:-8653123 MS.gene22429:CDS
CCTTTGTTAGGGTGGAAATC+TGG 0.395570 7.1:-8652973 MS.gene22429:CDS
GGTAATCTCAATTTCTTCCT+TGG 0.395833 7.1:+8651826 None:intergenic
TTGGAACAGCACTTCAGATT+AGG 0.401029 7.1:-8652699 MS.gene22429:CDS
GCGATCTTCATGTTGGAATT+CGG 0.404653 7.1:-8653029 MS.gene22429:CDS
CTGGCTCCCTGCATGCCGGC+AGG 0.407927 7.1:+8651700 None:intergenic
GCCATCTTGAACCTCATTCC+AGG 0.409391 7.1:+8652670 None:intergenic
TTAAACGGTTGTTGGAAACT+AGG 0.416552 7.1:+8651616 None:intergenic
AACTAGTCCTGCCGGCATGC+AGG 0.419630 7.1:-8651707 MS.gene22429:CDS
CAATCCAACTGAGATGAATA+TGG 0.421601 7.1:-8653673 MS.gene22429:CDS
AAAACATGTGAGTTAACTTC+TGG 0.421701 7.1:+8653567 None:intergenic
AGCGACAAGAAACTTGCGTC+TGG 0.427650 7.1:-8653084 MS.gene22429:CDS
TTGGAAATTGGCCATCAATT+GGG 0.428714 7.1:+8651788 None:intergenic
TGCACAATCTTCAGAGAAAC+CGG 0.428735 7.1:-8651491 MS.gene22429:CDS
GTCGCAATATTATTATTAAA+CGG 0.430671 7.1:+8651601 None:intergenic
CTTATTGCTTCAACTCTACA+TGG 0.431451 7.1:+8653465 None:intergenic
CTGCCGGCATGCAGGGAGCC+AGG 0.432868 7.1:-8651699 MS.gene22429:CDS
ACATTAGAGATGAAACATTC+AGG 0.433701 7.1:-8651277 MS.gene22429:intron
GAAATGTTCTCACTGGTGTT+CGG 0.434122 7.1:+8651538 None:intergenic
AGTTGAAGCAATAAGATATA+TGG 0.445009 7.1:-8653457 MS.gene22429:CDS
CTAGGCTGAAAGAGACCTAA+TGG 0.448362 7.1:+8651634 None:intergenic
CATCATTATCAAAACTAACT+TGG 0.449861 7.1:+8653376 None:intergenic
TGATGAGTCCTCAGTTTCAA+TGG 0.449908 7.1:+8652648 None:intergenic
GATAATAAACTTCGAAGAAA+CGG 0.452871 7.1:-8652886 MS.gene22429:CDS
GCTAATAAGTGATGGAATGA+TGG 0.454476 7.1:-8652848 MS.gene22429:CDS
GTTGTCAACAAATGCCTCTT+CGG 0.456311 7.1:+8653126 None:intergenic
ATGCCGGCAGGACTAGTTTC+GGG 0.456648 7.1:+8651712 None:intergenic
TTCTTCCTTGGCGGTATGAA+AGG 0.458131 7.1:+8651838 None:intergenic
CGCCGAGCATGCATGTGAAC+CGG 0.459270 7.1:-8653526 MS.gene22429:CDS
AGTTTCTTGTCGCTGACAAA+AGG 0.461470 7.1:+8653093 None:intergenic
GTGGTTTATTATCCTCGGTC+AGG 0.470650 7.1:-8652754 MS.gene22429:CDS
CACCGGTTCACATGCATGCT+CGG 0.471821 7.1:+8653524 None:intergenic
AAGTGATGGAATGATGGGTA+GGG 0.472687 7.1:-8652842 MS.gene22429:CDS
GACTCCATATTCATCTCAGT+TGG 0.472803 7.1:+8653669 None:intergenic
TTGGAGTCGATCCTTTGTTA+GGG 0.473989 7.1:-8652984 MS.gene22429:CDS
ATTTGTCCTGCACCACCTTA+CGG 0.476461 7.1:-8652937 MS.gene22429:CDS
CGAAGAAACGGTAAAGGTAA+TGG 0.476494 7.1:-8652874 MS.gene22429:CDS
TTGATGTGGTTTATTATCCT+CGG 0.489017 7.1:-8652759 MS.gene22429:CDS
TTGTTTGGAAAAGTTGGCAT+TGG 0.489751 7.1:+8651769 None:intergenic
GGATAATAAACCACATCAAA+CGG 0.491751 7.1:+8652763 None:intergenic
GGCCATCAATTGGGAAATCT+GGG 0.492331 7.1:+8651797 None:intergenic
AGGACTCATCAAGGATAAGT+TGG 0.493550 7.1:-8652636 MS.gene22429:CDS
CTTCAGATTAGGTGGTGTCC+TGG 0.494054 7.1:-8652688 MS.gene22429:CDS
TGGTGCGGCTTTGCATGATC+CGG 0.495348 7.1:+8651472 None:intergenic
AATCTCAATTTCTTCCTTGG+CGG 0.497432 7.1:+8651829 None:intergenic
CATCAGATGTACGTGTCGGC+AGG 0.505339 7.1:+8651353 None:intergenic
TAAGTGATGGAATGATGGGT+AGG 0.517866 7.1:-8652843 MS.gene22429:CDS
TTCAGGCTGCTGATCCGTCA+TGG 0.519149 7.1:-8652591 MS.gene22429:CDS
ACTAGTCCTGCCGGCATGCA+GGG 0.520362 7.1:-8651706 MS.gene22429:CDS
ATCTTCATGTTGGAATTCGG+AGG 0.523611 7.1:-8653026 MS.gene22429:CDS
GATGACTGTCCCTAATAACT+TGG 0.526305 7.1:-8651572 MS.gene22429:CDS
GGCATGCAGGGAGCCAGGCA+TGG 0.527776 7.1:-8651694 MS.gene22429:CDS
AAGACCGAAATGACCATGCC+TGG 0.532259 7.1:+8651681 None:intergenic
AATCCTCCGTAAGGTGGTGC+AGG 0.533772 7.1:+8652931 None:intergenic
TTAGGGTGGAAATCTGGTAG+TGG 0.537403 7.1:-8652967 MS.gene22429:CDS
AGCGTTTCTGCACAATATCT+AGG 0.540389 7.1:+8653252 None:intergenic
GCGACAAGAAACTTGCGTCT+GGG 0.540853 7.1:-8653083 MS.gene22429:CDS
GGCGGTATGAAAGGCGAAAG+AGG 0.541655 7.1:+8651847 None:intergenic
GAGTAAGCACTGAAATTCAC+CGG 0.548533 7.1:+8653507 None:intergenic
AGGATGTTCATGGCGAAAAG+TGG 0.550349 7.1:-8653176 MS.gene22429:CDS
CGACAAGAAACTTGCGTCTG+GGG 0.550603 7.1:-8653082 MS.gene22429:CDS
AATGGATTGCTAATAAGTGA+TGG 0.550837 7.1:-8652856 MS.gene22429:CDS
TTACCCGAAACTAGTCCTGC+CGG 0.553790 7.1:-8651715 MS.gene22429:CDS
AAGATTATGAAAATCTGGTA+AGG 0.555027 7.1:+8651657 None:intergenic
GCTAAAAGGCGAAATAATGT+TGG 0.555377 7.1:-8653003 MS.gene22429:CDS
ATGCCTGGCTCCCTGCATGC+CGG 0.557141 7.1:+8651696 None:intergenic
GTGATGGAATGATGGGTAGG+GGG 0.558347 7.1:-8652840 MS.gene22429:CDS
CATTTCAGGCACGTTTATAG+GGG 0.562067 7.1:-8653153 MS.gene22429:CDS
TTGCACCATTCCTCCTGCAA+CGG 0.567997 7.1:+8653593 None:intergenic
AGTGATGGAATGATGGGTAG+GGG 0.568376 7.1:-8652841 MS.gene22429:CDS
GGCATTTGTTGACAACTGGA+TGG 0.569244 7.1:-8653119 MS.gene22429:CDS
TTAGGTGGTGTCCTGGAATG+AGG 0.569864 7.1:-8652681 MS.gene22429:CDS
ATTGGGAAATCTGGGAGTTG+AGG 0.570713 7.1:+8651805 None:intergenic
TTGAAACTGAGGACTCATCA+AGG 0.572823 7.1:-8652645 MS.gene22429:CDS
AAACTTCGAAGAAACGGTAA+AGG 0.575815 7.1:-8652880 MS.gene22429:CDS
GAGACTTCATCAGAAAAGCT+AGG 0.576418 7.1:-8651174 MS.gene22429:CDS
AACGATGGAAATCCTCCGTA+AGG 0.577357 7.1:+8652922 None:intergenic
GAAAACGGCGATCTTCATGT+TGG 0.577451 7.1:-8653036 MS.gene22429:CDS
AGAGTGTGGACCCTCAGCTA+TGG 0.582931 7.1:-8653620 MS.gene22429:CDS
GAGTCGATCCTTTGTTAGGG+TGG 0.585067 7.1:-8652981 MS.gene22429:CDS
CTATGGCATGCCGTTGCAGG+AGG 0.585809 7.1:-8653603 MS.gene22429:CDS
TAATATGCAGCCGTTTGATG+TGG 0.585844 7.1:-8652773 MS.gene22429:CDS
AAGTTATTAGGGACAGTCAT+CGG 0.589613 7.1:+8651574 None:intergenic
CTAATAAGTGATGGAATGAT+GGG 0.591799 7.1:-8652847 MS.gene22429:CDS
GCAACGGCATGCCATAGCTG+AGG 0.591988 7.1:+8653609 None:intergenic
GCATGCTCGGCGTGACCCTG+AGG 0.592711 7.1:+8653537 None:intergenic
CATGCTCGGCGTGACCCTGA+GGG 0.593580 7.1:+8653538 None:intergenic
CGTCATGGTCTGATTCTATG+TGG 0.597184 7.1:-8652576 MS.gene22429:CDS
GTTTGCATCAGATTGTGTCA+AGG 0.603398 7.1:+8653296 None:intergenic
CGAGCATGAAATGTTCTCAC+TGG 0.604009 7.1:+8651531 None:intergenic
GCATGCCGTTGCAGGAGGAA+TGG 0.606658 7.1:-8653598 MS.gene22429:CDS
ATGAAGTGTATGCAAAACTC+AGG 0.607388 7.1:-8653419 MS.gene22429:CDS
GATACTATTTCAACTTGCCA+CGG 0.610748 7.1:+8651886 None:intergenic
GCGGTATGAAAGGCGAAAGA+GGG 0.612138 7.1:+8651848 None:intergenic
ACTCTACATGGAATGAAAGA+CGG 0.613123 7.1:+8653477 None:intergenic
CAACGGCATGCCATAGCTGA+GGG 0.613865 7.1:+8653610 None:intergenic
TCCTGGAATGAGGTTCAAGA+TGG 0.614384 7.1:-8652671 MS.gene22429:CDS
TCTTCATGTTGGAATTCGGA+GGG 0.615735 7.1:-8653025 MS.gene22429:CDS
TTTCGCCTTTCATACCGCCA+AGG 0.619271 7.1:-8651843 MS.gene22429:CDS
TCTTCCTCTCCCGAAAACGA+TGG 0.620463 7.1:+8652907 None:intergenic
GAACAGCACTTCAGATTAGG+TGG 0.620797 7.1:-8652696 MS.gene22429:CDS
TTTATAGGGGAACGCCGAAG+AGG 0.625074 7.1:-8653140 MS.gene22429:CDS
GTTATTGAAGCAATAAAACT+CGG 0.633322 7.1:-8652799 MS.gene22429:CDS
CCAGATTTCCACCCTAACAA+AGG 0.634082 7.1:+8652973 None:intergenic
CTCTCATCAGATGTACGTGT+CGG 0.637287 7.1:+8651349 None:intergenic
CAAGATGGCCATTGAAACTG+AGG 0.643200 7.1:-8652656 MS.gene22429:CDS
AAAGGCGAAAGAGGGATCGA+AGG 0.643435 7.1:+8651856 None:intergenic
GATGGAAATCCTCCGTAAGG+TGG 0.645097 7.1:+8652925 None:intergenic
TTCTATGTGGAGACTTCTCG+AGG 0.645176 7.1:-8652563 MS.gene22429:intron
ATGTGAAAAGAGTGAATCCG+TGG 0.650057 7.1:-8651903 MS.gene22429:CDS
CAAACAATACAAGTCGACAC+TGG 0.651728 7.1:-8651433 MS.gene22429:CDS
TCTGATGCAAACAATGGTGG+TGG 0.655667 7.1:-8653285 MS.gene22429:CDS
CAATGCGAAGAAACATTCGC+AGG 0.655730 7.1:-8651304 MS.gene22429:CDS
CATCTGATGAGAGGTTCGAG+TGG 0.680653 7.1:-8651339 MS.gene22429:CDS
TGTCCTGCACCACCTTACGG+AGG 0.685773 7.1:-8652934 MS.gene22429:CDS
CACATAGAATCAGACCATGA+CGG 0.689130 7.1:+8652577 None:intergenic
CGACACGTACATCTGATGAG+AGG 0.689516 7.1:-8651348 MS.gene22429:CDS
ACTTCATCAGAAAAGCTAGG+AGG 0.691502 7.1:-8651171 MS.gene22429:CDS
ACACAATCTGATGCAAACAA+TGG 0.696099 7.1:-8653291 MS.gene22429:CDS
CAATCTGATGCAAACAATGG+TGG 0.722659 7.1:-8653288 MS.gene22429:CDS
AACTCAGGAGTACCTGACCG+AGG 0.728041 7.1:+8652742 None:intergenic
TTAGCTGAATAGTCCAAACG+AGG 0.756003 7.1:+8653225 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAAAAAATTGGAATATT+AGG + chr7.1:8653130-8653149 None:intergenic 10.0%
!! TAGTAATATATGCAATAAAA+AGG + chr7.1:8652837-8652856 None:intergenic 15.0%
!! TTAATGTATATATTTGTGTA+TGG - chr7.1:8652720-8652739 MS.gene22429:CDS 15.0%
!!! GTTAGATTTTACTTATATTT+TGG - chr7.1:8652426-8652445 MS.gene22429:intron 15.0%
!!! TTTTAGCAAATTCTAATAAT+AGG + chr7.1:8652615-8652634 None:intergenic 15.0%
!! ATTCAAAGTAAAATATGTGA+AGG + chr7.1:8652682-8652701 None:intergenic 20.0%
!! GTCGCAATATTATTATTAAA+CGG + chr7.1:8653265-8653284 None:intergenic 20.0%
!! TATTATTATTAAACGGTTGT+TGG + chr7.1:8653258-8653277 None:intergenic 20.0%
!! TCAAGTAAATTAATTCTAGA+GGG + chr7.1:8652349-8652368 None:intergenic 20.0%
!!! GAATGTTTTGAGAATAATAA+CGG - chr7.1:8652386-8652405 MS.gene22429:intron 20.0%
! AACTTAAAAGGATTATGCTT+TGG + chr7.1:8652565-8652584 None:intergenic 25.0%
! AAGATTATGAAAATCTGGTA+AGG + chr7.1:8653209-8653228 None:intergenic 25.0%
! AATGGAAGATTATGAAAATC+TGG + chr7.1:8653214-8653233 None:intergenic 25.0%
! AGTTGAAGCAATAAGATATA+TGG - chr7.1:8651406-8651425 MS.gene22429:CDS 25.0%
! CATCATTATCAAAACTAACT+TGG + chr7.1:8651490-8651509 None:intergenic 25.0%
! CTAACTTGGTTAATATTCAT+AGG + chr7.1:8651476-8651495 None:intergenic 25.0%
! CTCAAGTAAATTAATTCTAG+AGG + chr7.1:8652350-8652369 None:intergenic 25.0%
! CTTGTGAAAACTTCTTTAAT+TGG - chr7.1:8652145-8652164 MS.gene22429:intron 25.0%
! GATAATAAACTTCGAAGAAA+CGG - chr7.1:8651977-8651996 MS.gene22429:intron 25.0%
! GTATGGTAATATAGATACAA+TGG - chr7.1:8652737-8652756 MS.gene22429:CDS 25.0%
! GTTATTGAAGCAATAAAACT+CGG - chr7.1:8652064-8652083 MS.gene22429:intron 25.0%
! TCTCTTCTTACAATTTCATT+AGG + chr7.1:8652776-8652795 None:intergenic 25.0%
! TTGGAATATTAGGATTTAGA+AGG + chr7.1:8653120-8653139 None:intergenic 25.0%
!! GATTTTCATAATCTTCCATT+AGG - chr7.1:8653214-8653233 MS.gene22429:CDS 25.0%
!! GTTTCGGGTAAATAAAAAAT+TGG + chr7.1:8653139-8653158 None:intergenic 25.0%
!! TGATTTGTATAAATTCCACA+AGG + chr7.1:8652496-8652515 None:intergenic 25.0%
!! TTTTCATCAGTACCATAAAT+TGG - chr7.1:8652583-8652602 MS.gene22429:CDS 25.0%
!!! ATGATTAGTCATTTTCTTCT+CGG + chr7.1:8653467-8653486 None:intergenic 25.0%
!!! CAAGTTAGTTTTGATAATGA+TGG - chr7.1:8651488-8651507 MS.gene22429:CDS 25.0%
!!! TCATACTTTTTAGGTTACAT+GGG - chr7.1:8652916-8652935 MS.gene22429:CDS 25.0%
!!! TTCACATTTTTAAGTATCTC+AGG + chr7.1:8652947-8652966 None:intergenic 25.0%
!!! TTTCTGATGTCATACTTTTT+AGG - chr7.1:8652907-8652926 MS.gene22429:CDS 25.0%
AAAACATGTGAGTTAACTTC+TGG + chr7.1:8651299-8651318 None:intergenic 30.0%
AATAGGAAGCTTCCAATTTA+TGG + chr7.1:8652598-8652617 None:intergenic 30.0%
ACATTAGAGATGAAACATTC+AGG - chr7.1:8653586-8653605 MS.gene22429:CDS 30.0%
CTACATCACTATCATACATT+AGG - chr7.1:8652644-8652663 MS.gene22429:CDS 30.0%
GGATAATAAACCACATCAAA+CGG + chr7.1:8652103-8652122 None:intergenic 30.0%
TAGATACAATGGAACATTGT+TGG - chr7.1:8652748-8652767 MS.gene22429:CDS 30.0%
TGACATCAGAAAATCATTCA+CGG + chr7.1:8652899-8652918 None:intergenic 30.0%
TTAGGATTTAGAAGGTTGTT+TGG + chr7.1:8653112-8653131 None:intergenic 30.0%
TTGATGTGGTTTATTATCCT+CGG - chr7.1:8652104-8652123 MS.gene22429:intron 30.0%
TTGCAAGAATACACATTCTA+TGG + chr7.1:8652530-8652549 None:intergenic 30.0%
TTTGCAATGCCAAGTTATTA+GGG + chr7.1:8653303-8653322 None:intergenic 30.0%
! CTAATAAGTGATGGAATGAT+GGG - chr7.1:8652016-8652035 MS.gene22429:intron 30.0%
! CTAATGTATGATAGTGATGT+AGG + chr7.1:8652646-8652665 None:intergenic 30.0%
! TATGATAGTGATGTAGGTAT+AGG + chr7.1:8652640-8652659 None:intergenic 30.0%
! TTTTGCAATGCCAAGTTATT+AGG + chr7.1:8653304-8653323 None:intergenic 30.0%
!! AATGGATTGCTAATAAGTGA+TGG - chr7.1:8652007-8652026 MS.gene22429:intron 30.0%
!! GGTACTGATGAAAACTTAAA+AGG + chr7.1:8652577-8652596 None:intergenic 30.0%
!! TCAAGGATAAGTTGGTTTAT+CGG - chr7.1:8652235-8652254 MS.gene22429:intron 30.0%
!!! GTCATACTTTTTAGGTTACA+TGG - chr7.1:8652915-8652934 MS.gene22429:CDS 30.0%
!!! GTGTTTTTGAGATCTGAAAA+CGG - chr7.1:8651812-8651831 MS.gene22429:CDS 30.0%
AAACTTCGAAGAAACGGTAA+AGG - chr7.1:8651983-8652002 MS.gene22429:intron 35.0%
AAGTTATTAGGGACAGTCAT+CGG + chr7.1:8653292-8653311 None:intergenic 35.0%
AATCTCAATTTCTTCCTTGG+CGG + chr7.1:8653037-8653056 None:intergenic 35.0%
ACACAATCTGATGCAAACAA+TGG - chr7.1:8651572-8651591 MS.gene22429:CDS 35.0%
ACTCTACATGGAATGAAAGA+CGG + chr7.1:8651389-8651408 None:intergenic 35.0%
AGAAGGTTGTTTGGAAAAGT+TGG + chr7.1:8653103-8653122 None:intergenic 35.0%
ATGAAGTGTATGCAAAACTC+AGG - chr7.1:8651444-8651463 MS.gene22429:CDS 35.0%
ATTGGAAATTGGCCATCAAT+TGG + chr7.1:8653079-8653098 None:intergenic 35.0%
CAATCCAACTGAGATGAATA+TGG - chr7.1:8651190-8651209 MS.gene22429:intron 35.0%
CTTATTGCTTCAACTCTACA+TGG + chr7.1:8651401-8651420 None:intergenic 35.0%
GAAAAATATCCTGAAGAGGA+GGG + chr7.1:8651664-8651683 None:intergenic 35.0%
GAAAAATGTGAACAAGAGTG+TGG - chr7.1:8651229-8651248 MS.gene22429:intron 35.0%
GATACTATTTCAACTTGCCA+CGG + chr7.1:8652980-8652999 None:intergenic 35.0%
GCTAAAAGGCGAAATAATGT+TGG - chr7.1:8651860-8651879 MS.gene22429:CDS 35.0%
GGTAATCTCAATTTCTTCCT+TGG + chr7.1:8653040-8653059 None:intergenic 35.0%
TTAAACGGTTGTTGGAAACT+AGG + chr7.1:8653250-8653269 None:intergenic 35.0%
TTGGAAATTGGCCATCAATT+GGG + chr7.1:8653078-8653097 None:intergenic 35.0%
TTGGGAAAAATATCCTGAAG+AGG + chr7.1:8651668-8651687 None:intergenic 35.0%
TTGTCATATAGCAGCTATAG+TGG - chr7.1:8652455-8652474 MS.gene22429:intron 35.0%
TTGTTTGGAAAAGTTGGCAT+TGG + chr7.1:8653097-8653116 None:intergenic 35.0%
! ATTTTTCCCAAGGATGTTCA+TGG - chr7.1:8651677-8651696 MS.gene22429:CDS 35.0%
! CATCAACGTGTCTGAAATTA+AGG - chr7.1:8651520-8651539 MS.gene22429:CDS 35.0%
! GAAAAGTTGGCATTGGAAAT+TGG + chr7.1:8653090-8653109 None:intergenic 35.0%
! GAAGTTTTCACAAGAAACTC+AGG + chr7.1:8652139-8652158 None:intergenic 35.0%
! GAGTTTTGCATACACTTCAT+CGG + chr7.1:8651444-8651463 None:intergenic 35.0%
! GCTAATAAGTGATGGAATGA+TGG - chr7.1:8652015-8652034 MS.gene22429:intron 35.0%
! TCTTCAGGATATTTTTCCCA+AGG - chr7.1:8651667-8651686 MS.gene22429:CDS 35.0%
! TGGAATGAAAGACGGAATTT+TGG + chr7.1:8651381-8651400 None:intergenic 35.0%
!! TTTGATAATGATGGTGTTGC+TGG - chr7.1:8651497-8651516 MS.gene22429:CDS 35.0%
ACTTCATCAGAAAAGCTAGG+AGG - chr7.1:8653692-8653711 MS.gene22429:CDS 40.0%
AGCGTTTCTGCACAATATCT+AGG + chr7.1:8651614-8651633 None:intergenic 40.0%
AGGACTCATCAAGGATAAGT+TGG - chr7.1:8652227-8652246 MS.gene22429:intron 40.0%
AGTTTCTTGTCGCTGACAAA+AGG + chr7.1:8651773-8651792 None:intergenic 40.0%
ATCATTCACGGCTGAAACAA+AGG + chr7.1:8652887-8652906 None:intergenic 40.0%
ATCTTCATGTTGGAATTCGG+AGG - chr7.1:8651837-8651856 MS.gene22429:CDS 40.0%
ATGTGAAAAGAGTGAATCCG+TGG - chr7.1:8652960-8652979 MS.gene22429:CDS 40.0%
CAAACAATACAAGTCGACAC+TGG - chr7.1:8653430-8653449 MS.gene22429:CDS 40.0%
CAATCTGATGCAAACAATGG+TGG - chr7.1:8651575-8651594 MS.gene22429:CDS 40.0%
CACATAGAATCAGACCATGA+CGG + chr7.1:8652289-8652308 None:intergenic 40.0%
CACTATATTGCTATGCCTTG+TGG - chr7.1:8652478-8652497 MS.gene22429:intron 40.0%
CATTTCAGGCACGTTTATAG+GGG - chr7.1:8651710-8651729 MS.gene22429:CDS 40.0%
CGAAGAAACGGTAAAGGTAA+TGG - chr7.1:8651989-8652008 MS.gene22429:intron 40.0%
GAAATGTTCTCACTGGTGTT+CGG + chr7.1:8653328-8653347 None:intergenic 40.0%
GACTCCATATTCATCTCAGT+TGG + chr7.1:8651197-8651216 None:intergenic 40.0%
GAGACTTCATCAGAAAAGCT+AGG - chr7.1:8653689-8653708 MS.gene22429:CDS 40.0%
GATGACTGTCCCTAATAACT+TGG - chr7.1:8653291-8653310 MS.gene22429:CDS 40.0%
GCATTTCAGGCACGTTTATA+GGG - chr7.1:8651709-8651728 MS.gene22429:CDS 40.0%
GCGATCTTCATGTTGGAATT+CGG - chr7.1:8651834-8651853 MS.gene22429:CDS 40.0%
GGAAAAATATCCTGAAGAGG+AGG + chr7.1:8651665-8651684 None:intergenic 40.0%
GTAAAATATGTGAAGGCCCT+CGG + chr7.1:8652675-8652694 None:intergenic 40.0%
GTTGTCAACAAATGCCTCTT+CGG + chr7.1:8651740-8651759 None:intergenic 40.0%
GTTTGCATCAGATTGTGTCA+AGG + chr7.1:8651570-8651589 None:intergenic 40.0%
TAAAATATGTGAAGGCCCTC+GGG + chr7.1:8652674-8652693 None:intergenic 40.0%
TAATATGCAGCCGTTTGATG+TGG - chr7.1:8652090-8652109 MS.gene22429:intron 40.0%
TCTTCATGTTGGAATTCGGA+GGG - chr7.1:8651838-8651857 MS.gene22429:CDS 40.0%
TGATGAGTCCTCAGTTTCAA+TGG + chr7.1:8652218-8652237 None:intergenic 40.0%
TGCACAATCTTCAGAGAAAC+CGG - chr7.1:8653372-8653391 MS.gene22429:CDS 40.0%
TTAGCTGAATAGTCCAAACG+AGG + chr7.1:8651641-8651660 None:intergenic 40.0%
TTGAAACTGAGGACTCATCA+AGG - chr7.1:8652218-8652237 MS.gene22429:intron 40.0%
TTGGAACAGCACTTCAGATT+AGG - chr7.1:8652164-8652183 MS.gene22429:intron 40.0%
TTGGAGTCGATCCTTTGTTA+GGG - chr7.1:8651879-8651898 MS.gene22429:CDS 40.0%
! ACATGTTTTCTACTTCCCTC+AGG - chr7.1:8651310-8651329 MS.gene22429:CDS 40.0%
! CATGTTTTCTACTTCCCTCA+GGG - chr7.1:8651311-8651330 MS.gene22429:CDS 40.0%
! TTTGGCCAAAAAGCACAAGT+TGG + chr7.1:8653414-8653433 None:intergenic 40.0%
! TTTTCGCCATGAACATCCTT+GGG + chr7.1:8651686-8651705 None:intergenic 40.0%
!! AAGAGGCATTTGTTGACAAC+TGG - chr7.1:8651740-8651759 MS.gene22429:CDS 40.0%
!! AAGTGATGGAATGATGGGTA+GGG - chr7.1:8652021-8652040 MS.gene22429:intron 40.0%
!! CAGTGTCGACTTGTATTGTT+TGG + chr7.1:8653432-8653451 None:intergenic 40.0%
!! GAGTAAGCACTGAAATTCAC+CGG + chr7.1:8651359-8651378 None:intergenic 40.0%
!! TAAGTGATGGAATGATGGGT+AGG - chr7.1:8652020-8652039 MS.gene22429:intron 40.0%
!! TGGAAATCTGGTAGTGGAAT+TGG - chr7.1:8651902-8651921 MS.gene22429:CDS 40.0%
!!! AGAAACGCTTTTTCCTCGTT+TGG - chr7.1:8651625-8651644 MS.gene22429:CDS 40.0%
AAAATATGTGAAGGCCCTCG+GGG + chr7.1:8652673-8652692 None:intergenic 45.0%
AACGATGGAAATCCTCCGTA+AGG + chr7.1:8651944-8651963 None:intergenic 45.0%
AGGATGTTCATGGCGAAAAG+TGG - chr7.1:8651687-8651706 MS.gene22429:CDS 45.0%
ATGGCGAAAAGTGGCATTTC+AGG - chr7.1:8651696-8651715 MS.gene22429:CDS 45.0%
ATTGGGAAATCTGGGAGTTG+AGG + chr7.1:8653061-8653080 None:intergenic 45.0%
ATTTGTCCTGCACCACCTTA+CGG - chr7.1:8651926-8651945 MS.gene22429:CDS 45.0%
CAAGATGGCCATTGAAACTG+AGG - chr7.1:8652207-8652226 MS.gene22429:intron 45.0%
CAATGCGAAGAAACATTCGC+AGG - chr7.1:8653559-8653578 MS.gene22429:CDS 45.0%
CATACATTAGGTATCCCCGA+GGG - chr7.1:8652656-8652675 MS.gene22429:CDS 45.0%
CCAGATTTCCACCCTAACAA+AGG + chr7.1:8651893-8651912 None:intergenic 45.0%
CCTTTGTTAGGGTGGAAATC+TGG - chr7.1:8651890-8651909 MS.gene22429:CDS 45.0%
CGAGCATGAAATGTTCTCAC+TGG + chr7.1:8653335-8653354 None:intergenic 45.0%
CGGAACTATTGCTTCTGTTC+AGG - chr7.1:8652255-8652274 MS.gene22429:intron 45.0%
CGTCATGGTCTGATTCTATG+TGG - chr7.1:8652287-8652306 MS.gene22429:intron 45.0%
CTAGGCTGAAAGAGACCTAA+TGG + chr7.1:8653232-8653251 None:intergenic 45.0%
CTCCCAGATTTCCCAATTGA+TGG - chr7.1:8653064-8653083 MS.gene22429:CDS 45.0%
CTCTCATCAGATGTACGTGT+CGG + chr7.1:8653517-8653536 None:intergenic 45.0%
CTGCGAATGTTTCTTCGCAT+TGG + chr7.1:8653561-8653580 None:intergenic 45.0%
GAAAACGGCGATCTTCATGT+TGG - chr7.1:8651827-8651846 MS.gene22429:CDS 45.0%
GAACAGCACTTCAGATTAGG+TGG - chr7.1:8652167-8652186 MS.gene22429:intron 45.0%
GGCATTTCAGGCACGTTTAT+AGG - chr7.1:8651708-8651727 MS.gene22429:CDS 45.0%
GGCCATCAATTGGGAAATCT+GGG + chr7.1:8653069-8653088 None:intergenic 45.0%
GTGGTTTATTATCCTCGGTC+AGG - chr7.1:8652109-8652128 MS.gene22429:intron 45.0%
GTTGGAGTCGATCCTTTGTT+AGG - chr7.1:8651878-8651897 MS.gene22429:CDS 45.0%
TCATACATTAGGTATCCCCG+AGG - chr7.1:8652655-8652674 MS.gene22429:CDS 45.0%
TCCTGGAATGAGGTTCAAGA+TGG - chr7.1:8652192-8652211 MS.gene22429:intron 45.0%
TCTGATGCAAACAATGGTGG+TGG - chr7.1:8651578-8651597 MS.gene22429:CDS 45.0%
TGGCCATCAATTGGGAAATC+TGG + chr7.1:8653070-8653089 None:intergenic 45.0%
TTAGGGTGGAAATCTGGTAG+TGG - chr7.1:8651896-8651915 MS.gene22429:CDS 45.0%
TTCTATGTGGAGACTTCTCG+AGG - chr7.1:8652300-8652319 MS.gene22429:intron 45.0%
TTCTTCCTTGGCGGTATGAA+AGG + chr7.1:8653028-8653047 None:intergenic 45.0%
TTGGAATTCGGAGGGCTAAA+AGG - chr7.1:8651846-8651865 MS.gene22429:CDS 45.0%
! CGGAGGATTTCCATCGTTTT+CGG - chr7.1:8651946-8651965 MS.gene22429:intron 45.0%
! CTTTTCGCCATGAACATCCT+TGG + chr7.1:8651687-8651706 None:intergenic 45.0%
! GGAGGATTTCCATCGTTTTC+GGG - chr7.1:8651947-8651966 MS.gene22429:intron 45.0%
! GGCATTTGTTGACAACTGGA+TGG - chr7.1:8651744-8651763 MS.gene22429:CDS 45.0%
!! AGTGATGGAATGATGGGTAG+GGG - chr7.1:8652022-8652041 MS.gene22429:intron 45.0%
!! ATTTCCATCGTTTTCGGGAG+AGG - chr7.1:8651952-8651971 MS.gene22429:intron 45.0%
!! CCAAAAAGCACAAGTTGGTG+CGG + chr7.1:8653409-8653428 None:intergenic 45.0%
AAAGGCGAAAGAGGGATCGA+AGG + chr7.1:8653010-8653029 None:intergenic 50.0%
AAGACCGAAATGACCATGCC+TGG + chr7.1:8653185-8653204 None:intergenic 50.0%
AGCGACAAGAAACTTGCGTC+TGG - chr7.1:8651779-8651798 MS.gene22429:CDS 50.0%
CATCTGATGAGAGGTTCGAG+TGG - chr7.1:8653524-8653543 MS.gene22429:CDS 50.0%
CGACAAGAAACTTGCGTCTG+GGG - chr7.1:8651781-8651800 MS.gene22429:CDS 50.0%
CGACACGTACATCTGATGAG+AGG - chr7.1:8653515-8653534 MS.gene22429:CDS 50.0%
CTTCAGATTAGGTGGTGTCC+TGG - chr7.1:8652175-8652194 MS.gene22429:intron 50.0%
GAGTCGATCCTTTGTTAGGG+TGG - chr7.1:8651882-8651901 MS.gene22429:CDS 50.0%
GATGGAAATCCTCCGTAAGG+TGG + chr7.1:8651941-8651960 None:intergenic 50.0%
GCCATCTTGAACCTCATTCC+AGG + chr7.1:8652196-8652215 None:intergenic 50.0%
GCGACAAGAAACTTGCGTCT+GGG - chr7.1:8651780-8651799 MS.gene22429:CDS 50.0%
GCGGTATGAAAGGCGAAAGA+GGG + chr7.1:8653018-8653037 None:intergenic 50.0%
TCTTCCTCTCCCGAAAACGA+TGG + chr7.1:8651959-8651978 None:intergenic 50.0%
TTACCCGAAACTAGTCCTGC+CGG - chr7.1:8653148-8653167 MS.gene22429:CDS 50.0%
TTAGGTGGTGTCCTGGAATG+AGG - chr7.1:8652182-8652201 MS.gene22429:intron 50.0%
TTCAGCTAACCCTCCTCTTC+AGG - chr7.1:8651652-8651671 MS.gene22429:CDS 50.0%
TTGCACCATTCCTCCTGCAA+CGG + chr7.1:8651273-8651292 None:intergenic 50.0%
TTTATAGGGGAACGCCGAAG+AGG - chr7.1:8651723-8651742 MS.gene22429:CDS 50.0%
TTTCGCCTTTCATACCGCCA+AGG - chr7.1:8653020-8653039 MS.gene22429:CDS 50.0%
! CCGCACCAACTTGTGCTTTT+TGG - chr7.1:8653406-8653425 MS.gene22429:CDS 50.0%
!! GTGATGGAATGATGGGTAGG+GGG - chr7.1:8652023-8652042 MS.gene22429:intron 50.0%
AATCCTCCGTAAGGTGGTGC+AGG + chr7.1:8651935-8651954 None:intergenic 55.0%
AGAGTGTGGACCCTCAGCTA+TGG - chr7.1:8651243-8651262 MS.gene22429:intron 55.0%
CAACGGCATGCCATAGCTGA+GGG + chr7.1:8651256-8651275 None:intergenic 55.0%
GGAGCCAGGCATGGTCATTT+CGG - chr7.1:8653178-8653197 MS.gene22429:CDS 55.0%
GGCGGTATGAAAGGCGAAAG+AGG + chr7.1:8653019-8653038 None:intergenic 55.0%
TGGTGCGGCTTTGCATGATC+CGG + chr7.1:8653394-8653413 None:intergenic 55.0%
TTCAGGCTGCTGATCCGTCA+TGG - chr7.1:8652272-8652291 MS.gene22429:intron 55.0%
! CATCAGATGTACGTGTCGGC+AGG + chr7.1:8653513-8653532 None:intergenic 55.0%
!! AACTCAGGAGTACCTGACCG+AGG + chr7.1:8652124-8652143 None:intergenic 55.0%
!! ATGCCGGCAGGACTAGTTTC+GGG + chr7.1:8653154-8653173 None:intergenic 55.0%
!! CACCGGTTCACATGCATGCT+CGG + chr7.1:8651342-8651361 None:intergenic 55.0%
!! CATGCCGGCAGGACTAGTTT+CGG + chr7.1:8653155-8653174 None:intergenic 55.0%
!! TGGAATGATGGGTAGGGGGA+AGG - chr7.1:8652027-8652046 MS.gene22429:intron 55.0%
AACTAGTCCTGCCGGCATGC+AGG - chr7.1:8653156-8653175 MS.gene22429:CDS 60.0%
ACTAGTCCTGCCGGCATGCA+GGG - chr7.1:8653157-8653176 MS.gene22429:CDS 60.0%
CAGCTATGGCATGCCGTTGC+AGG - chr7.1:8651257-8651276 MS.gene22429:intron 60.0%
CGCCGAGCATGCATGTGAAC+CGG - chr7.1:8651337-8651356 MS.gene22429:CDS 60.0%
CTATGGCATGCCGTTGCAGG+AGG - chr7.1:8651260-8651279 MS.gene22429:intron 60.0%
GCAACGGCATGCCATAGCTG+AGG + chr7.1:8651257-8651276 None:intergenic 60.0%
GCATGCCGTTGCAGGAGGAA+TGG - chr7.1:8651265-8651284 MS.gene22429:intron 60.0%
TGTCCTGCACCACCTTACGG+AGG - chr7.1:8651929-8651948 MS.gene22429:CDS 60.0%
ATGCCTGGCTCCCTGCATGC+CGG + chr7.1:8653170-8653189 None:intergenic 65.0%
CATGCTCGGCGTGACCCTGA+GGG + chr7.1:8651328-8651347 None:intergenic 65.0%
GCATGCTCGGCGTGACCCTG+AGG + chr7.1:8651329-8651348 None:intergenic 70.0%
GGCATGCAGGGAGCCAGGCA+TGG - chr7.1:8653169-8653188 MS.gene22429:CDS 70.0%
CTGCCGGCATGCAGGGAGCC+AGG - chr7.1:8653164-8653183 MS.gene22429:CDS 75.0%
CTGGCTCCCTGCATGCCGGC+AGG + chr7.1:8653166-8653185 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 8651167 8653718 8651167 ID=MS.gene22429
chr7.1 mRNA 8651167 8653718 8651167 ID=MS.gene22429.t1;Parent=MS.gene22429
chr7.1 exon 8652564 8653718 8652564 ID=MS.gene22429.t1.exon1;Parent=MS.gene22429.t1
chr7.1 CDS 8652564 8653718 8652564 ID=cds.MS.gene22429.t1;Parent=MS.gene22429.t1
chr7.1 exon 8651278 8651956 8651278 ID=MS.gene22429.t1.exon2;Parent=MS.gene22429.t1
chr7.1 CDS 8651278 8651956 8651278 ID=cds.MS.gene22429.t1;Parent=MS.gene22429.t1
chr7.1 exon 8651167 8651195 8651167 ID=MS.gene22429.t1.exon3;Parent=MS.gene22429.t1
chr7.1 CDS 8651167 8651195 8651167 ID=cds.MS.gene22429.t1;Parent=MS.gene22429.t1
Gene Sequence

>MS.gene22429

ATGAAAGAAAAAAGAAAAGGTTGCAATCCAACTGAGATGAATATGGAGTCAAACAAAAAATTGAAAAATGTGAACAAGAGTGTGGACCCTCAGCTATGGCATGCCGTTGCAGGAGGAATGGTGCAAATGCCAGAAGTTAACTCACATGTTTTCTACTTCCCTCAGGGTCACGCCGAGCATGCATGTGAACCGGTGAATTTCAGTGCTTACTCCAAAATTCCGTCTTTCATTCCATGTAGAGTTGAAGCAATAAGATATATGGCTAATCATGAGACCGATGAAGTGTATGCAAAACTCAGGCTTGTTCCTATGAATATTAACCAAGTTAGTTTTGATAATGATGGTGTTGCTGGCATCAACGTGTCTGAAATTAAGGATAAACATCAATCTTTTGCAAAAACCTTGACACAATCTGATGCAAACAATGGTGGTGGCTTTTCTTGTCCTAGATATTGTGCAGAAACGCTTTTTCCTCGTTTGGACTATTCAGCTAACCCTCCTCTTCAGGATATTTTTCCCAAGGATGTTCATGGCGAAAAGTGGCATTTCAGGCACGTTTATAGGGGAACGCCGAAGAGGCATTTGTTGACAACTGGATGGAGTCCTTTTGTCAGCGACAAGAAACTTGCGTCTGGGGATTCGATTGTGTTTTTGAGATCTGAAAACGGCGATCTTCATGTTGGAATTCGGAGGGCTAAAAGGCGAAATAATGTTGGAGTCGATCCTTTGTTAGGGTGGAAATCTGGTAGTGGAATTGGAATTTGTCCTGCACCACCTTACGGAGGATTTCCATCGTTTTCGGGAGAGGAAGATAATAAACTTCGAAGAAACGGTAAAGGTAATGGATTGCTAATAAGTGATGGAATGATGGGTAGGGGGAAGGTGAAAGCTCTAGAAGTTATTGAAGCAATAAAACTCGGTACTAATATGCAGCCGTTTGATGTGGTTTATTATCCTCGGTCAGGTACTCCTGAGTTTCTTGTGAAAACTTCTTTAATTGGAACAGCACTTCAGATTAGGTGGTGTCCTGGAATGAGGTTCAAGATGGCCATTGAAACTGAGGACTCATCAAGGATAAGTTGGTTTATCGGAACTATTGCTTCTGTTCAGGCTGCTGATCCGTCATGGTCTGATTCTATGTGGAGACTTCTCGAGGTATATACATGTTTATTATACACTCCCTCTAGAATTAATTTACTTGAGAATTTGTTTTATTGATGAATGTTTTGAGAATAATAACGGTAAATACAGTAAAGTTAGTTAGATTTTACTTATATTTTGGTCAACGTTGTCATATAGCAGCTATAGTGGCACTATATTGCTATGCCTTGTGGAATTTATACAAATCACTATTGTTCTACCATAGAATGTGTATTCTTGCAACATTTTCTTTTTCCAAAGCATAATCCTTTTAAGTTTTCATCAGTACCATAAATTGGAAGCTTCCTATTATTAGAATTTGCTAAAAATCCTATACCTACATCACTATCATACATTAGGTATCCCCGAGGGCCTTCACATATTTTACTTTGAATACATTCAAAATTTGCAAGTTAATGTATATATTTGTGTATGGTAATATAGATACAATGGAACATTGTTGGTACCTAATGAAATTGTAAGAAGAGAATTAGATTAGAATTTCATACTAATGAAATTCAGAGTGTCCTTTTTATTGCATATATTACTATGTCATTTTGAATTACATTAATTTTGACCTTTGTTTCAGCCGTGAATGATTTTCTGATGTCATACTTTTTAGGTTACATGGGATGAACCTGAGATACTTAAAAATGTGAAAAGAGTGAATCCGTGGCAAGTTGAAATAGTATCGAACATGCCTTCGATCCCTCTTTCGCCTTTCATACCGCCAAGGAAGAAATTGAGATTACCTCAACTCCCAGATTTCCCAATTGATGGCCAATTTCCAATGCCAACTTTTCCAAACAACCTTCTAAATCCTAATATTCCAATTTTTTATTTACCCGAAACTAGTCCTGCCGGCATGCAGGGAGCCAGGCATGGTCATTTCGGTCTTACCTTACCAGATTTTCATAATCTTCCATTAGGTCTCTTTCAGCCTAGTTTCCAACAACCGTTTAATAATAATATTGCGACGATGCCGATGACTGTCCCTAATAACTTGGCATTGCAAAAGCCGAACACCAGTGAGAACATTTCATGCTCGCATTCGATATCAACTTCTGCACAATCTTCAGAGAAACCGGATCATGCAAAGCCGCACCAACTTGTGCTTTTTGGCCAAACAATACAAGTCGACACTGGAAATGAGAATTCCGAGAAGAAAATGACTAATCATTTGTCTGATTTTCATCTACAAAGCCTGCCGACACGTACATCTGATGAGAGGTTCGAGTGGAATGCTAAGAACCAATGCGAAGAAACATTCGCAGGAGAAACATTAGAGATGAAACATTCAGGTAAGAATGAATAAAATTCAGTATCTTTCTACTAGAAATTGATTTATGATATATGATAATAACTTATTTGTCTCTCTTTCAGAGACTTCATCAGAAAAGCTAGGAGGTTGA
Protein sequence

>MS.gene22429.t1

MKEKRKGCNPTEMNMESNKKLKNVNKSVDPQLWHAVAGGMVQMPEVNSHVFYFPQGHAEHACEPVNFSAYSKIPSFIPCRVEAIRYMANHETDEVYAKLRLVPMNINQVSFDNDGVAGINVSEIKDKHQSFAKTLTQSDANNGGGFSCPRYCAETLFPRLDYSANPPLQDIFPKDVHGEKWHFRHVYRGTPKRHLLTTGWSPFVSDKKLASGDSIVFLRSENGDLHVGIRRAKRRNNVGVDPLLGWKSGSGIGICPAPPYGGFPSFSGEEDNKLRRNGKGNGLLISDGMMGRGKVKALEVIEAIKLGTNMQPFDVVYYPRSGTPEFLVKTSLIGTALQIRWCPGMRFKMAIETEDSSRISWFIGTIASVQAADPSWSDSMWRLLEVTWDEPEILKNVKRVNPWQVEIVSNMPSIPLSPFIPPRKKLRLPQLPDFPIDGQFPMPTFPNNLLNPNIPIFYLPETSPAGMQGARHGHFGLTLPDFHNLPLGLFQPSFQQPFNNNIATMPMTVPNNLALQKPNTSENISCSHSISTSAQSSEKPDHAKPHQLVLFGQTIQVDTGNENSEKKMTNHLSDFHLQSLPTRTSDERFEWNAKNQCEETFAGETLEMKHSETSSEKLGG