Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22469.t1 | AES79326.2 | 98.8 | 167 | 0 | 1 | 1 | 165 | 1 | 167 | 2.10E-84 | 321.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22469.t1 | Q8VYK4 | 72.2 | 169 | 38 | 6 | 1 | 160 | 1 | 169 | 9.5e-57 | 221.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22469.t1 | G7L4J2 | 98.8 | 167 | 0 | 1 | 1 | 165 | 1 | 167 | 1.5e-84 | 321.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene22469.t1 | TF | NF-YB |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22469.t1 | MTR_7g061270 | 98.802 | 167 | 0 | 1 | 1 | 165 | 1 | 167 | 2.05e-121 | 339 |
| MS.gene22469.t1 | MTR_7g100650 | 98.742 | 159 | 0 | 1 | 1 | 157 | 1 | 159 | 4.82e-115 | 323 |
| MS.gene22469.t1 | MTR_1g072790 | 73.718 | 156 | 28 | 5 | 12 | 158 | 11 | 162 | 4.58e-74 | 220 |
| MS.gene22469.t1 | MTR_3g058980 | 72.308 | 130 | 27 | 3 | 9 | 137 | 13 | 134 | 3.14e-59 | 182 |
| MS.gene22469.t1 | MTR_2g026710 | 71.311 | 122 | 26 | 1 | 1 | 122 | 1 | 113 | 3.49e-59 | 182 |
| MS.gene22469.t1 | MTR_5g095740 | 72.951 | 122 | 27 | 2 | 10 | 129 | 9 | 126 | 5.54e-58 | 179 |
| MS.gene22469.t1 | MTR_8g091720 | 78.095 | 105 | 23 | 0 | 11 | 115 | 13 | 117 | 1.46e-56 | 176 |
| MS.gene22469.t1 | MTR_8g093920 | 79.121 | 91 | 19 | 0 | 25 | 115 | 39 | 129 | 9.11e-53 | 167 |
| MS.gene22469.t1 | MTR_0392s0020 | 55.372 | 121 | 49 | 1 | 24 | 144 | 16 | 131 | 1.39e-48 | 154 |
| MS.gene22469.t1 | MTR_4g133938 | 70.588 | 102 | 30 | 0 | 14 | 115 | 7 | 108 | 1.46e-48 | 154 |
| MS.gene22469.t1 | MTR_1g088860 | 69.792 | 96 | 29 | 0 | 24 | 119 | 34 | 129 | 2.25e-48 | 155 |
| MS.gene22469.t1 | MTR_4g119500 | 62.617 | 107 | 38 | 1 | 9 | 115 | 7 | 111 | 3.96e-47 | 150 |
| MS.gene22469.t1 | MTR_4g133952 | 50.704 | 142 | 68 | 1 | 24 | 163 | 56 | 197 | 8.79e-47 | 152 |
| MS.gene22469.t1 | MTR_1g039040 | 64.894 | 94 | 33 | 0 | 24 | 117 | 4 | 97 | 1.56e-45 | 148 |
| MS.gene22469.t1 | MTR_1g083070 | 46.667 | 120 | 62 | 1 | 26 | 143 | 4 | 123 | 5.11e-37 | 124 |
| MS.gene22469.t1 | MTR_1g029070 | 48.454 | 97 | 50 | 0 | 25 | 121 | 51 | 147 | 1.34e-29 | 107 |
| MS.gene22469.t1 | MTR_5g095900 | 42.308 | 104 | 59 | 1 | 14 | 116 | 3 | 106 | 1.16e-21 | 86.7 |
| MS.gene22469.t1 | MTR_1g028480 | 44.565 | 92 | 38 | 1 | 56 | 134 | 19 | 110 | 1.07e-19 | 79.7 |
| MS.gene22469.t1 | MTR_1g029100 | 40.789 | 76 | 45 | 0 | 31 | 106 | 7 | 82 | 2.09e-18 | 75.9 |
| MS.gene22469.t1 | MTR_2g056000 | 32.110 | 109 | 74 | 0 | 27 | 135 | 42 | 150 | 2.95e-18 | 78.2 |
| MS.gene22469.t1 | MTR_4g112380 | 32.039 | 103 | 70 | 0 | 27 | 129 | 12 | 114 | 5.50e-16 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22469.t1 | AT2G37060 | 74.850 | 167 | 27 | 7 | 1 | 158 | 1 | 161 | 5.62e-79 | 232 |
| MS.gene22469.t1 | AT2G37060 | 74.850 | 167 | 27 | 7 | 1 | 158 | 1 | 161 | 5.62e-79 | 232 |
| MS.gene22469.t1 | AT2G37060 | 74.850 | 167 | 27 | 7 | 1 | 158 | 1 | 161 | 5.62e-79 | 232 |
| MS.gene22469.t1 | AT3G53340 | 77.551 | 147 | 26 | 4 | 17 | 157 | 19 | 164 | 5.76e-76 | 224 |
| MS.gene22469.t1 | AT3G53340 | 77.551 | 147 | 26 | 4 | 17 | 157 | 19 | 164 | 5.76e-76 | 224 |
| MS.gene22469.t1 | AT2G38880 | 76.923 | 130 | 25 | 1 | 1 | 130 | 1 | 125 | 9.66e-71 | 210 |
| MS.gene22469.t1 | AT2G38880 | 75.758 | 132 | 25 | 2 | 1 | 130 | 1 | 127 | 7.73e-69 | 205 |
| MS.gene22469.t1 | AT2G38880 | 75.758 | 132 | 25 | 2 | 1 | 130 | 1 | 127 | 1.03e-68 | 205 |
| MS.gene22469.t1 | AT2G38880 | 75.758 | 132 | 25 | 2 | 1 | 130 | 1 | 127 | 1.03e-68 | 205 |
| MS.gene22469.t1 | AT2G38880 | 75.758 | 132 | 25 | 2 | 1 | 130 | 1 | 127 | 1.03e-68 | 205 |
| MS.gene22469.t1 | AT3G53340 | 85.849 | 106 | 14 | 1 | 17 | 121 | 19 | 124 | 2.57e-65 | 197 |
| MS.gene22469.t1 | AT3G53340 | 85.849 | 106 | 14 | 1 | 17 | 121 | 19 | 124 | 2.57e-65 | 197 |
| MS.gene22469.t1 | AT2G38880 | 64.516 | 155 | 25 | 2 | 1 | 130 | 1 | 150 | 9.51e-65 | 196 |
| MS.gene22469.t1 | AT2G38880 | 64.516 | 155 | 25 | 2 | 1 | 130 | 1 | 150 | 9.51e-65 | 196 |
| MS.gene22469.t1 | AT2G38880 | 79.130 | 115 | 19 | 1 | 1 | 115 | 1 | 110 | 1.48e-64 | 193 |
| MS.gene22469.t1 | AT2G38880 | 79.130 | 115 | 19 | 1 | 1 | 115 | 1 | 110 | 4.33e-64 | 194 |
| MS.gene22469.t1 | AT2G38880 | 79.130 | 115 | 19 | 1 | 1 | 115 | 1 | 110 | 4.33e-64 | 194 |
| MS.gene22469.t1 | AT2G38880 | 79.130 | 115 | 19 | 1 | 1 | 115 | 1 | 110 | 4.33e-64 | 194 |
| MS.gene22469.t1 | AT3G53340 | 89.000 | 100 | 10 | 1 | 17 | 115 | 19 | 118 | 5.46e-64 | 192 |
| MS.gene22469.t1 | AT4G14540 | 80.952 | 105 | 18 | 1 | 13 | 115 | 6 | 110 | 1.62e-59 | 182 |
| MS.gene22469.t1 | AT5G47640 | 85.714 | 91 | 13 | 0 | 25 | 115 | 26 | 116 | 1.62e-56 | 176 |
| MS.gene22469.t1 | AT2G13570 | 79.167 | 96 | 18 | 1 | 25 | 120 | 35 | 128 | 3.33e-54 | 171 |
| MS.gene22469.t1 | AT2G47810 | 65.741 | 108 | 34 | 2 | 24 | 128 | 49 | 156 | 2.55e-47 | 151 |
| MS.gene22469.t1 | AT5G47670 | 61.682 | 107 | 39 | 1 | 24 | 128 | 27 | 133 | 1.49e-46 | 151 |
| MS.gene22469.t1 | AT5G47670 | 61.682 | 107 | 39 | 1 | 24 | 128 | 56 | 162 | 3.71e-46 | 151 |
| MS.gene22469.t1 | AT5G47670 | 61.682 | 107 | 39 | 1 | 24 | 128 | 56 | 162 | 3.71e-46 | 151 |
| MS.gene22469.t1 | AT1G21970 | 51.538 | 130 | 59 | 2 | 1 | 126 | 31 | 160 | 2.73e-45 | 149 |
| MS.gene22469.t1 | AT1G09030 | 50.000 | 134 | 56 | 3 | 26 | 148 | 3 | 136 | 5.89e-43 | 140 |
| MS.gene22469.t1 | AT5G23090 | 35.644 | 101 | 59 | 2 | 27 | 123 | 12 | 110 | 1.88e-17 | 75.1 |
| MS.gene22469.t1 | AT5G08190 | 34.653 | 101 | 60 | 2 | 27 | 123 | 12 | 110 | 7.09e-17 | 73.9 |
| MS.gene22469.t1 | AT5G08190 | 37.500 | 80 | 50 | 0 | 27 | 106 | 12 | 91 | 9.65e-17 | 73.6 |
| MS.gene22469.t1 | AT5G23090 | 38.462 | 78 | 48 | 0 | 27 | 104 | 12 | 89 | 1.64e-16 | 72.8 |
| MS.gene22469.t1 | AT5G23090 | 38.462 | 78 | 48 | 0 | 27 | 104 | 12 | 89 | 1.64e-16 | 72.8 |
| MS.gene22469.t1 | AT5G23090 | 38.462 | 78 | 48 | 0 | 27 | 104 | 12 | 89 | 1.64e-16 | 72.8 |
| MS.gene22469.t1 | AT5G23090 | 38.710 | 62 | 38 | 0 | 43 | 104 | 15 | 76 | 6.84e-12 | 60.5 |
Find 45 sgRNAs with CRISPR-Local
Find 89 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTGGGCGATGGCTACTTT+AGG | 0.202896 | 7.1:+8232725 | MS.gene22469:CDS |
| AACGGTTTCCTTAGCATCTT+TGG | 0.251977 | 7.1:-8232526 | None:intergenic |
| TTTGGGCGATGGCTACTTTA+GGG | 0.280322 | 7.1:+8232726 | MS.gene22469:CDS |
| CTTTCGTGGCTGCCGCCGCC+AGG | 0.317211 | 7.1:-8232396 | None:intergenic |
| GCCAGGACTCGCCGGAGTTT+CGG | 0.338910 | 7.1:-8232379 | None:intergenic |
| TAACGGTGATGATTTGCTTT+GGG | 0.394165 | 7.1:+8232709 | MS.gene22469:CDS |
| GCCAGATGTGTCTCCACCCT+TGG | 0.406781 | 7.1:-8233348 | None:intergenic |
| TCCGAAACTCCGGCGAGTCC+TGG | 0.416968 | 7.1:+8232378 | MS.gene22469:CDS |
| TTAACGGTGATGATTTGCTT+TGG | 0.430649 | 7.1:+8232708 | MS.gene22469:CDS |
| GGTGTTTCAGGGTGATACTA+AGG | 0.432945 | 7.1:+8233319 | MS.gene22469:intron |
| AGATGCTAAGGAAACCGTTC+AGG | 0.443640 | 7.1:+8232530 | MS.gene22469:CDS |
| GAGAAGAGGAAGACGATTAA+CGG | 0.446276 | 7.1:+8232692 | MS.gene22469:CDS |
| GACTGTGTTCGCCGCTTTCG+TGG | 0.449949 | 7.1:-8232410 | None:intergenic |
| GATGGCTACTTTAGGGTTTG+AGG | 0.453692 | 7.1:+8232733 | MS.gene22469:CDS |
| GCCAAGGGTGGAGACACATC+TGG | 0.461100 | 7.1:+8233347 | MS.gene22469:CDS |
| ACGGTCTTGTTCACGGATGT+TGG | 0.478749 | 7.1:-8232439 | None:intergenic |
| TAACCTCTCTGTATCTTGTA+AGG | 0.479347 | 7.1:-8232781 | None:intergenic |
| TGATGATTTGCTTTGGGCGA+TGG | 0.479911 | 7.1:+8232715 | MS.gene22469:CDS |
| CATCAAGGTTCTTTCTCACA+AGG | 0.487515 | 7.1:+8233525 | MS.gene22469:CDS |
| CTGCCGCCGCCAGGACTCGC+CGG | 0.499622 | 7.1:-8232387 | None:intergenic |
| TGTTTCCTACACAAATTCTC+AGG | 0.502672 | 7.1:+8233548 | MS.gene22469:CDS |
| AAATTGCAGCTTGTTCATCA+AGG | 0.514442 | 7.1:+8233510 | MS.gene22469:intron |
| TGATACTAAGGGCTCTGCCA+AGG | 0.527179 | 7.1:+8233331 | MS.gene22469:CDS |
| CACTACTCTCTAAAATGCTA+AGG | 0.528875 | 7.1:+8233574 | MS.gene22469:CDS |
| TCAACAAGGTTCTAATCCTC+AGG | 0.530968 | 7.1:+8233382 | MS.gene22469:CDS |
| GAAGGAAACGGTCTTGTTCA+CGG | 0.533282 | 7.1:-8232446 | None:intergenic |
| GGCGGCGGCAGCCACGAAAG+CGG | 0.544156 | 7.1:+8232399 | MS.gene22469:CDS |
| GATACTAAGGGCTCTGCCAA+GGG | 0.547138 | 7.1:+8233332 | MS.gene22469:CDS |
| CGACGATATGTCCGAAACTC+CGG | 0.548200 | 7.1:+8232368 | None:intergenic |
| CTTGTAAGGTAAATCTTAAG+AGG | 0.551310 | 7.1:-8232767 | None:intergenic |
| GTGTTTCAGGGTGATACTAA+GGG | 0.557727 | 7.1:+8233320 | MS.gene22469:intron |
| ACTCCGGCGAGTCCTGGCGG+CGG | 0.562769 | 7.1:+8232384 | MS.gene22469:CDS |
| TGTTAGCGATAGGAAGGAAA+CGG | 0.567517 | 7.1:-8232458 | None:intergenic |
| TAAAATCGCCAAAGATGCTA+AGG | 0.569776 | 7.1:+8232518 | MS.gene22469:CDS |
| ATAAGTGTCAGAGAGAGAAG+AGG | 0.595900 | 7.1:+8232678 | MS.gene22469:CDS |
| GGTGATGAAGCTGATGAACT+CGG | 0.601461 | 7.1:-8232562 | None:intergenic |
| GGCTGATGTTAGCGATAGGA+AGG | 0.601546 | 7.1:-8232464 | None:intergenic |
| CTCTCTCTGACACTTATCAG+AGG | 0.607674 | 7.1:-8232672 | None:intergenic |
| CTCGGAGACACATTCCTGAA+CGG | 0.614495 | 7.1:-8232544 | None:intergenic |
| ACTAAGGGCTCTGCCAAGGG+TGG | 0.614551 | 7.1:+8233335 | MS.gene22469:CDS |
| ATGCGGCTGATGTTAGCGAT+AGG | 0.621968 | 7.1:-8232468 | None:intergenic |
| GAAACTCCGGCGAGTCCTGG+CGG | 0.650343 | 7.1:+8232381 | MS.gene22469:CDS |
| TGTTACCTGAGAATTTGTGT+AGG | 0.662155 | 7.1:-8233553 | None:intergenic |
| TGTTCACGGATGTTGGAACG+AGG | 0.689840 | 7.1:-8232432 | None:intergenic |
| TTACCTTACAAGATACAGAG+AGG | 0.715766 | 7.1:+8232778 | MS.gene22469:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTGATGTTTAATTGTTTA+GGG | + | chr7.1:8232649-8232668 | MS.gene22469:intron | 15.0% |
| !! | AAAGTAAGAAAAAGAAAGTA+AGG | - | chr7.1:8232611-8232630 | None:intergenic | 20.0% |
| !! | AGTGAAAATTTAATGTCAAT+TGG | + | chr7.1:8232872-8232891 | MS.gene22469:intron | 20.0% |
| !! | GATTTGATGTTTAATTGTTT+AGG | + | chr7.1:8232648-8232667 | MS.gene22469:intron | 20.0% |
| !! | GTGAAAATTTAATGTCAATT+GGG | + | chr7.1:8232873-8232892 | MS.gene22469:intron | 20.0% |
| !!! | AATTGACATTAAATTTTCAC+TGG | - | chr7.1:8232873-8232892 | None:intergenic | 20.0% |
| !!! | ATTGACATTAAATTTTCACT+GGG | - | chr7.1:8232872-8232891 | None:intergenic | 20.0% |
| !!! | TACTTTTCTAATTGTTTCTA+GGG | - | chr7.1:8233464-8233483 | None:intergenic | 20.0% |
| !!! | TTTTACTTTATAAGCTTTTC+TGG | + | chr7.1:8232843-8232862 | MS.gene22469:intron | 20.0% |
| !! | GTTTTACACTTTCAATGTTT+TGG | + | chr7.1:8233247-8233266 | MS.gene22469:intron | 25.0% |
| !! | TTGACATTAAATTTTCACTG+GGG | - | chr7.1:8232871-8232890 | None:intergenic | 25.0% |
| !!! | AATAGGTTTCTGTGATTTTT+TGG | + | chr7.1:8233270-8233289 | MS.gene22469:intron | 25.0% |
| !!! | ACGAATCTATGTTTTATTTG+TGG | + | chr7.1:8233298-8233317 | MS.gene22469:intron | 25.0% |
| !!! | ACTTTTCTAATTGTTTCTAG+GGG | - | chr7.1:8233463-8233482 | None:intergenic | 25.0% |
| !!! | CTACTTTTCTAATTGTTTCT+AGG | - | chr7.1:8233465-8233484 | None:intergenic | 25.0% |
| !!! | CTATTGTACTTTTTAACTGA+TGG | + | chr7.1:8232955-8232974 | MS.gene22469:intron | 25.0% |
| !!! | TTTTTTCATTGCTTTGTCAT+GGG | + | chr7.1:8232983-8233002 | MS.gene22469:intron | 25.0% |
| !!! | TTTTTTTCATTGCTTTGTCA+TGG | + | chr7.1:8232982-8233001 | MS.gene22469:intron | 25.0% |
| AAGTTCAAGCAATGAAAGAA+AGG | - | chr7.1:8233046-8233065 | None:intergenic | 30.0% | |
| CTTGTAAGGTAAATCTTAAG+AGG | - | chr7.1:8232770-8232789 | None:intergenic | 30.0% | |
| GATATTTGTGGAGATACTTT+AGG | - | chr7.1:8233190-8233209 | None:intergenic | 30.0% | |
| TATCTCCACAAATATCAATG+TGG | + | chr7.1:8233194-8233213 | MS.gene22469:intron | 30.0% | |
| ! | ATTATGCGTGATTTTATAGC+CGG | + | chr7.1:8233429-8233448 | MS.gene22469:intron | 30.0% |
| ! | TGACATTAAATTTTCACTGG+GGG | - | chr7.1:8232870-8232889 | None:intergenic | 30.0% |
| !!! | CACTTTCAATGTTTTGGAAT+AGG | + | chr7.1:8233253-8233272 | MS.gene22469:intron | 30.0% |
| !!! | GATTAGTTTTTTTGCACTGA+TGG | + | chr7.1:8233099-8233118 | MS.gene22469:intron | 30.0% |
| !!! | GTTTTATTTGTGGTGTTTCA+GGG | + | chr7.1:8233308-8233327 | MS.gene22469:intron | 30.0% |
| !!! | TGTTTTATTTGTGGTGTTTC+AGG | + | chr7.1:8233307-8233326 | MS.gene22469:intron | 30.0% |
| AAAAAAGCTCTTCCTGCTAA+TGG | + | chr7.1:8232495-8232514 | MS.gene22469:CDS | 35.0% | |
| AATTCCGTATAGATTGTCAG+AGG | - | chr7.1:8232900-8232919 | None:intergenic | 35.0% | |
| ATGTATGTGTTTACTACCTG+AGG | - | chr7.1:8233401-8233420 | None:intergenic | 35.0% | |
| CAATGTGGTGTGATTTGATT+GGG | + | chr7.1:8233209-8233228 | MS.gene22469:intron | 35.0% | |
| CTTCACTGTACCATGTTTAT+AGG | + | chr7.1:8233158-8233177 | MS.gene22469:intron | 35.0% | |
| GGCAAAAAAGATGTTCAACA+AGG | + | chr7.1:8233368-8233387 | MS.gene22469:CDS | 35.0% | |
| TAAAATCGCCAAAGATGCTA+AGG | + | chr7.1:8232518-8232537 | MS.gene22469:CDS | 35.0% | |
| TAACCTCTCTGTATCTTGTA+AGG | - | chr7.1:8232784-8232803 | None:intergenic | 35.0% | |
| TCAATGTGGTGTGATTTGAT+TGG | + | chr7.1:8233208-8233227 | MS.gene22469:intron | 35.0% | |
| TCACACCACATTGATATTTG+TGG | - | chr7.1:8233202-8233221 | None:intergenic | 35.0% | |
| TGTTACCTGAGAATTTGTGT+AGG | - | chr7.1:8233556-8233575 | None:intergenic | 35.0% | |
| TGTTTCCTACACAAATTCTC+AGG | + | chr7.1:8233548-8233567 | MS.gene22469:CDS | 35.0% | |
| TTACAAGATACAGAGAGGTT+AGG | + | chr7.1:8232783-8232802 | MS.gene22469:intron | 35.0% | |
| TTACCTTACAAGATACAGAG+AGG | + | chr7.1:8232778-8232797 | MS.gene22469:CDS | 35.0% | |
| ! | AAATTGCAGCTTGTTCATCA+AGG | + | chr7.1:8233510-8233529 | MS.gene22469:intron | 35.0% |
| ! | TAGGAACTAGCCTATAAACA+TGG | - | chr7.1:8233171-8233190 | None:intergenic | 35.0% |
| !! | CACTACTCTCTAAAATGCTA+AGG | + | chr7.1:8233574-8233593 | MS.gene22469:CDS | 35.0% |
| !! | TAACGGTGATGATTTGCTTT+GGG | + | chr7.1:8232709-8232728 | MS.gene22469:CDS | 35.0% |
| !! | TTAACGGTGATGATTTGCTT+TGG | + | chr7.1:8232708-8232727 | MS.gene22469:CDS | 35.0% |
| !!! | GAAGAGCTTTTTTCATGATG+CGG | - | chr7.1:8232488-8232507 | None:intergenic | 35.0% |
| AACGGTTTCCTTAGCATCTT+TGG | - | chr7.1:8232529-8232548 | None:intergenic | 40.0% | |
| ATAAGTGTCAGAGAGAGAAG+AGG | + | chr7.1:8232678-8232697 | MS.gene22469:CDS | 40.0% | |
| ATTGGAAATGTTGCAGATGG+AGG | + | chr7.1:8233009-8233028 | MS.gene22469:intron | 40.0% | |
| CATCAAGGTTCTTTCTCACA+AGG | + | chr7.1:8233525-8233544 | MS.gene22469:CDS | 40.0% | |
| GAGAAGAGGAAGACGATTAA+CGG | + | chr7.1:8232692-8232711 | MS.gene22469:CDS | 40.0% | |
| GATTTGAAAATCGTACTCGC+TGG | - | chr7.1:8232586-8232605 | None:intergenic | 40.0% | |
| GTGTTTCAGGGTGATACTAA+GGG | + | chr7.1:8233320-8233339 | MS.gene22469:intron | 40.0% | |
| TCGATTGGAAATGTTGCAGA+TGG | + | chr7.1:8233006-8233025 | MS.gene22469:intron | 40.0% | |
| TGTTAGCGATAGGAAGGAAA+CGG | - | chr7.1:8232461-8232480 | None:intergenic | 40.0% | |
| ! | TCAACAAGGTTCTAATCCTC+AGG | + | chr7.1:8233382-8233401 | MS.gene22469:CDS | 40.0% |
| ! | TTGGCGATTTTACCATTAGC+AGG | - | chr7.1:8232510-8232529 | None:intergenic | 40.0% |
| AGATGCTAAGGAAACCGTTC+AGG | + | chr7.1:8232530-8232549 | MS.gene22469:CDS | 45.0% | |
| CTCTCTCTGACACTTATCAG+AGG | - | chr7.1:8232675-8232694 | None:intergenic | 45.0% | |
| GGGTCCTCTGACAATCTATA+CGG | + | chr7.1:8232893-8232912 | MS.gene22469:intron | 45.0% | |
| GGTGATGAAGCTGATGAACT+CGG | - | chr7.1:8232565-8232584 | None:intergenic | 45.0% | |
| GGTGTTTCAGGGTGATACTA+AGG | + | chr7.1:8233319-8233338 | MS.gene22469:intron | 45.0% | |
| TTGCTTTGTCATGGGTCGAT+TGG | + | chr7.1:8232991-8233010 | MS.gene22469:intron | 45.0% | |
| ! | TTTGGGCGATGGCTACTTTA+GGG | + | chr7.1:8232726-8232745 | MS.gene22469:CDS | 45.0% |
| !! | GAAGGAAACGGTCTTGTTCA+CGG | - | chr7.1:8232449-8232468 | None:intergenic | 45.0% |
| !! | GATGGCTACTTTAGGGTTTG+AGG | + | chr7.1:8232733-8232752 | MS.gene22469:CDS | 45.0% |
| !! | TGATGATTTGCTTTGGGCGA+TGG | + | chr7.1:8232715-8232734 | MS.gene22469:CDS | 45.0% |
| ATGCGGCTGATGTTAGCGAT+AGG | - | chr7.1:8232471-8232490 | None:intergenic | 50.0% | |
| CTCGGAGACACATTCCTGAA+CGG | - | chr7.1:8232547-8232566 | None:intergenic | 50.0% | |
| GATACTAAGGGCTCTGCCAA+GGG | + | chr7.1:8233332-8233351 | MS.gene22469:CDS | 50.0% | |
| GGCTGATGTTAGCGATAGGA+AGG | - | chr7.1:8232467-8232486 | None:intergenic | 50.0% | |
| TGATACTAAGGGCTCTGCCA+AGG | + | chr7.1:8233331-8233350 | MS.gene22469:CDS | 50.0% | |
| TGTTCACGGATGTTGGAACG+AGG | - | chr7.1:8232435-8232454 | None:intergenic | 50.0% | |
| ! | CTTTGGGCGATGGCTACTTT+AGG | + | chr7.1:8232725-8232744 | MS.gene22469:CDS | 50.0% |
| ! | GTTTCTAGGGGTGTGTTCTC+CGG | - | chr7.1:8233451-8233470 | None:intergenic | 50.0% |
| !! | ACGGTCTTGTTCACGGATGT+TGG | - | chr7.1:8232442-8232461 | None:intergenic | 50.0% |
| ACTAAGGGCTCTGCCAAGGG+TGG | + | chr7.1:8233335-8233354 | MS.gene22469:CDS | 60.0% | |
| GCCAAGGGTGGAGACACATC+TGG | + | chr7.1:8233347-8233366 | MS.gene22469:CDS | 60.0% | |
| GCCAGATGTGTCTCCACCCT+TGG | - | chr7.1:8233351-8233370 | None:intergenic | 60.0% | |
| ! | GACTGTGTTCGCCGCTTTCG+TGG | - | chr7.1:8232413-8232432 | None:intergenic | 60.0% |
| GAAACTCCGGCGAGTCCTGG+CGG | + | chr7.1:8232381-8232400 | MS.gene22469:CDS | 65.0% | |
| GCCAGGACTCGCCGGAGTTT+CGG | - | chr7.1:8232382-8232401 | None:intergenic | 65.0% | |
| TCCGAAACTCCGGCGAGTCC+TGG | + | chr7.1:8232378-8232397 | MS.gene22469:CDS | 65.0% | |
| ACTCCGGCGAGTCCTGGCGG+CGG | + | chr7.1:8232384-8232403 | MS.gene22469:CDS | 75.0% | |
| CTTTCGTGGCTGCCGCCGCC+AGG | - | chr7.1:8232399-8232418 | None:intergenic | 75.0% | |
| GGCGGCGGCAGCCACGAAAG+CGG | + | chr7.1:8232399-8232418 | MS.gene22469:CDS | 75.0% | |
| ! | CTGCCGCCGCCAGGACTCGC+CGG | - | chr7.1:8232390-8232409 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 8232375 | 8233608 | 8232375 | ID=MS.gene22469 |
| chr7.1 | mRNA | 8232375 | 8233608 | 8232375 | ID=MS.gene22469.t1;Parent=MS.gene22469 |
| chr7.1 | exon | 8232375 | 8232589 | 8232375 | ID=MS.gene22469.t1.exon1;Parent=MS.gene22469.t1 |
| chr7.1 | CDS | 8232375 | 8232589 | 8232375 | ID=cds.MS.gene22469.t1;Parent=MS.gene22469.t1 |
| chr7.1 | exon | 8232670 | 8232799 | 8232670 | ID=MS.gene22469.t1.exon2;Parent=MS.gene22469.t1 |
| chr7.1 | CDS | 8232670 | 8232799 | 8232670 | ID=cds.MS.gene22469.t1;Parent=MS.gene22469.t1 |
| chr7.1 | exon | 8233329 | 8233403 | 8233329 | ID=MS.gene22469.t1.exon3;Parent=MS.gene22469.t1 |
| chr7.1 | CDS | 8233329 | 8233403 | 8233329 | ID=cds.MS.gene22469.t1;Parent=MS.gene22469.t1 |
| chr7.1 | exon | 8233519 | 8233608 | 8233519 | ID=MS.gene22469.t1.exon4;Parent=MS.gene22469.t1 |
| chr7.1 | CDS | 8233519 | 8233608 | 8233519 | ID=cds.MS.gene22469.t1;Parent=MS.gene22469.t1 |
| Gene Sequence |
| Protein sequence |
