Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22842.t1 | TKY61299.1 | 57.7 | 305 | 70 | 2 | 11 | 256 | 41 | 345 | 2.10E-78 | 302.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22842.t1 | Q9FPW6 | 51.3 | 308 | 88 | 2 | 11 | 256 | 41 | 348 | 8.9e-70 | 265.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22842.t1 | A0A2K3PCB8 | 57.1 | 315 | 66 | 3 | 11 | 256 | 42 | 356 | 4.4e-78 | 300.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene22842.t1 | TR | TRAF |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22842.t1 | MTR_8g028190 | 52.273 | 308 | 89 | 3 | 11 | 260 | 39 | 346 | 1.88e-95 | 291 |
| MS.gene22842.t1 | MTR_8g028190 | 67.157 | 204 | 64 | 1 | 60 | 260 | 151 | 354 | 4.10e-86 | 267 |
| MS.gene22842.t1 | MTR_8g028190 | 67.157 | 204 | 64 | 1 | 60 | 260 | 183 | 386 | 1.20e-85 | 266 |
| MS.gene22842.t1 | MTR_4g088460 | 51.705 | 176 | 67 | 1 | 11 | 186 | 25 | 182 | 1.23e-49 | 167 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22842.t1 | AT3G61600 | 66.502 | 203 | 65 | 1 | 57 | 256 | 146 | 348 | 1.64e-85 | 265 |
| MS.gene22842.t1 | AT3G61600 | 66.502 | 203 | 65 | 1 | 57 | 256 | 146 | 348 | 1.78e-85 | 265 |
| MS.gene22842.t1 | AT2G46260 | 63.285 | 207 | 73 | 1 | 57 | 260 | 144 | 350 | 4.55e-84 | 262 |
| MS.gene22842.t1 | AT4G01160 | 46.809 | 282 | 115 | 4 | 11 | 260 | 19 | 297 | 8.64e-65 | 210 |
| MS.gene22842.t1 | AT4G01160 | 42.763 | 304 | 117 | 4 | 11 | 260 | 19 | 319 | 7.05e-61 | 201 |
Find 68 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTTCCAGCTTTGGGTATT+GGG | 0.122003 | 7.4:+1557471 | None:intergenic |
| TCTCTTCCAGCTTTGGGTAT+TGG | 0.224569 | 7.4:+1557470 | None:intergenic |
| GCTTCCTTCCAGTGTCTTGA+TGG | 0.278274 | 7.4:-1557918 | MS.gene22842:CDS |
| GAGGACATCAAGAATGAAAA+TGG | 0.348170 | 7.4:-1559748 | MS.gene22842:intron |
| TCTAATGGGATGCGGGAGTC+AGG | 0.349477 | 7.4:-1558253 | MS.gene22842:CDS |
| GACCTCACCAATTGCATTGC+TGG | 0.354612 | 7.4:-1558050 | MS.gene22842:CDS |
| TTCATTAATGACCAGGCATC+AGG | 0.389990 | 7.4:-1557604 | MS.gene22842:intron |
| TGCATTGCTGGATGTCTTGA+TGG | 0.401371 | 7.4:-1558038 | MS.gene22842:CDS |
| CACCAGTATCTATCCATTCT+CGG | 0.418747 | 7.4:-1559878 | MS.gene22842:CDS |
| GCAGCCAAGCAATACCTTGC+TGG | 0.425891 | 7.4:-1557869 | MS.gene22842:CDS |
| ATCCGCTGCGCACACATTCA+AGG | 0.430487 | 7.4:-1557412 | MS.gene22842:CDS |
| TGGTTCCACAAGGGCAGATT+GGG | 0.431076 | 7.4:-1559794 | MS.gene22842:CDS |
| ATCCGAGAATGGATAGATAC+TGG | 0.440769 | 7.4:+1559876 | None:intergenic |
| CTGATGGACATGCCTTTAGC+TGG | 0.452238 | 7.4:-1557576 | MS.gene22842:CDS |
| ATGGTTCCACAAGGGCAGAT+TGG | 0.454058 | 7.4:-1559795 | MS.gene22842:CDS |
| TGCACGACTTTGTGCTTAAG+TGG | 0.466726 | 7.4:-1557501 | MS.gene22842:CDS |
| CGTGCATGACATACTGCAGC+AGG | 0.478713 | 7.4:-1557991 | MS.gene22842:CDS |
| CAATGCAGTCTCCGGTGTCA+TGG | 0.488356 | 7.4:+1557952 | None:intergenic |
| GTGTGCGCAGCGGATGAAGC+GGG | 0.490022 | 7.4:+1557420 | None:intergenic |
| AAGACATCCAGCAATGCAAT+TGG | 0.494046 | 7.4:+1558043 | None:intergenic |
| TGAAGTATTCTATCCGAGAA+TGG | 0.494218 | 7.4:+1559865 | None:intergenic |
| ACTTTGTGCTTAAGTGGGTA+CGG | 0.495962 | 7.4:-1557495 | MS.gene22842:CDS |
| TGCCCTTGTGGAACCATCCT+CGG | 0.503341 | 7.4:+1559801 | None:intergenic |
| AGCGGGCAAGCTTTGCTTCG+AGG | 0.503600 | 7.4:+1557437 | None:intergenic |
| CAGGCATCAGGAGGAGCTGA+TGG | 0.504481 | 7.4:-1557592 | MS.gene22842:CDS |
| AGGTAGAGCAATGCAGTCTC+CGG | 0.521970 | 7.4:+1557944 | None:intergenic |
| ATACCCAAAGCTGGAAGAGA+TGG | 0.522209 | 7.4:-1557467 | MS.gene22842:CDS |
| CATGCCTTTAGCTGGAGTAA+AGG | 0.523060 | 7.4:-1557568 | MS.gene22842:CDS |
| TGCTTGGCTGCATCTATCAA+CGG | 0.526041 | 7.4:+1557881 | None:intergenic |
| ACCGTGAGAATCACTGCATC+TGG | 0.531887 | 7.4:-1558217 | MS.gene22842:intron |
| ACTCACAGGTGATGAGCTGC+AGG | 0.532712 | 7.4:-1557542 | MS.gene22842:CDS |
| AATGCAGTCTCCGGTGTCAT+GGG | 0.534326 | 7.4:+1557953 | None:intergenic |
| TACCCAAAGCTGGAAGAGAT+GGG | 0.535874 | 7.4:-1557466 | MS.gene22842:CDS |
| ACGGGCCCAATACCCAAAGC+TGG | 0.550161 | 7.4:-1557476 | MS.gene22842:CDS |
| CTTTGTGCTTAAGTGGGTAC+GGG | 0.552133 | 7.4:-1557494 | MS.gene22842:CDS |
| CTAATGGGATGCGGGAGTCA+GGG | 0.554008 | 7.4:-1558252 | MS.gene22842:CDS |
| ACGGCCAGCAAGGTATTGCT+TGG | 0.559147 | 7.4:+1557865 | None:intergenic |
| TGCAGAGGAAGCTCCTCTCA+TGG | 0.560844 | 7.4:-1558110 | MS.gene22842:intron |
| TATGCCTTTACTCCAGCTAA+AGG | 0.564053 | 7.4:+1557564 | None:intergenic |
| ACTTAGTTACATCTTTGTAA+CGG | 0.572795 | 7.4:+1557846 | None:intergenic |
| TGCGCACACATTCAAGGTTG+AGG | 0.573625 | 7.4:-1557406 | None:intergenic |
| ACTCATTCTAACGCCGAGGA+TGG | 0.576781 | 7.4:-1559814 | MS.gene22842:CDS |
| CATCTTTGTAACGGCCAGCA+AGG | 0.578112 | 7.4:+1557855 | None:intergenic |
| TGAGCTGCAGGTTGCATCTG+AGG | 0.587313 | 7.4:-1557530 | MS.gene22842:CDS |
| TCAGCCATCAAGACACTGGA+AGG | 0.588550 | 7.4:+1557914 | None:intergenic |
| GATGGCCGCAGACAGATTCG+AGG | 0.597081 | 7.4:-1558020 | MS.gene22842:CDS |
| TGGAGTAAAGGCATACTCAC+AGG | 0.598954 | 7.4:-1557556 | MS.gene22842:CDS |
| GCTAGCCCAATCTGCCCTTG+TGG | 0.603075 | 7.4:+1559789 | None:intergenic |
| AGCATCAGCCATCAAGACAC+TGG | 0.603828 | 7.4:+1557910 | None:intergenic |
| ATTGGGCTAGCCACGACAAG+AGG | 0.606487 | 7.4:-1559777 | MS.gene22842:CDS |
| AGACACTGGAAGGAAGCTCT+AGG | 0.606850 | 7.4:+1557924 | None:intergenic |
| ACCCAAAGCTGGAAGAGATG+GGG | 0.608418 | 7.4:-1557465 | MS.gene22842:CDS |
| GCACGACTTTGTGCTTAAGT+GGG | 0.621433 | 7.4:-1557500 | MS.gene22842:CDS |
| ATTAATGACCAGGCATCAGG+AGG | 0.625890 | 7.4:-1557601 | MS.gene22842:intron |
| CCCAAAGCTGGAAGAGATGG+GGG | 0.628805 | 7.4:-1557464 | MS.gene22842:CDS |
| TGTGTGCGCAGCGGATGAAG+CGG | 0.630964 | 7.4:+1557419 | None:intergenic |
| GCAAAATATACCCATGACAC+CGG | 0.631078 | 7.4:-1557963 | MS.gene22842:CDS |
| ATCCAGCAATGCAATTGGTG+AGG | 0.643944 | 7.4:+1558048 | None:intergenic |
| CCTCTCTTATCCTCTTGTCG+TGG | 0.649947 | 7.4:+1559767 | None:intergenic |
| AAATTCAGAAGCTCCATGAG+AGG | 0.659074 | 7.4:+1558097 | None:intergenic |
| ACCAGATGCAGTGATTCTCA+CGG | 0.660940 | 7.4:+1558216 | None:intergenic |
| ACGCCGAGGATGGTTCCACA+AGG | 0.662886 | 7.4:-1559804 | MS.gene22842:CDS |
| CCACGACAAGAGGATAAGAG+AGG | 0.664175 | 7.4:-1559767 | MS.gene22842:CDS |
| CGCAACCTCGAATCTGTCTG+CGG | 0.683210 | 7.4:+1558015 | None:intergenic |
| CGCCGAGGATGGTTCCACAA+GGG | 0.684386 | 7.4:-1559803 | MS.gene22842:CDS |
| TGAAACTCATTCTAACGCCG+AGG | 0.696384 | 7.4:-1559818 | MS.gene22842:CDS |
| AACCTTGAATGTGTGCGCAG+CGG | 0.697674 | 7.4:+1557410 | None:intergenic |
| GTGCATGACATACTGCAGCA+GGG | 0.699994 | 7.4:-1557990 | MS.gene22842:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAAAAAAAAACAAGTTT+TGG | + | chr7.4:1557907-1557926 | None:intergenic | 10.0% |
| !!! | TTGTCATTTTTTATTTTTTT+TGG | - | chr7.4:1557811-1557830 | MS.gene22842:intron | 10.0% |
| !! | ATTATTTGTCAAATATTCAT+TGG | - | chr7.4:1558383-1558402 | MS.gene22842:CDS | 15.0% |
| !! | TATCAGTAATTTAAATAAAG+TGG | + | chr7.4:1559489-1559508 | None:intergenic | 15.0% |
| !!! | ATTTTTACAATAAATGTACA+GGG | + | chr7.4:1558423-1558442 | None:intergenic | 15.0% |
| !! | AATTCACATATTGTTATGTT+CGG | + | chr7.4:1558191-1558210 | None:intergenic | 20.0% |
| !! | TTGACAAATAATCAATTTAC+CGG | + | chr7.4:1558375-1558394 | None:intergenic | 20.0% |
| !! | TTGAGTTATTATTAATGTAC+AGG | - | chr7.4:1558863-1558882 | MS.gene22842:intron | 20.0% |
| !!! | AAAAAACAAGTTTTGGTTTA+TGG | + | chr7.4:1557900-1557919 | None:intergenic | 20.0% |
| !!! | ATGTATAATTGCTTCTTTTT+TGG | - | chr7.4:1558804-1558823 | MS.gene22842:intron | 20.0% |
| !!! | GAAAAGCTCATTTTTTAATA+AGG | - | chr7.4:1558946-1558965 | MS.gene22842:intron | 20.0% |
| !!! | GATTTTTACAATAAATGTAC+AGG | + | chr7.4:1558424-1558443 | None:intergenic | 20.0% |
| !!! | GTTTTATGTGTTTATGAAAA+TGG | - | chr7.4:1557692-1557711 | MS.gene22842:intron | 20.0% |
| !!! | TATATTCATGTCATTTTCTA+GGG | - | chr7.4:1557862-1557881 | MS.gene22842:CDS | 20.0% |
| !!! | TGTGAATTAGTTTTTCAAAA+TGG | - | chr7.4:1558203-1558222 | MS.gene22842:intron | 20.0% |
| !!! | TTATATTCATGTCATTTTCT+AGG | - | chr7.4:1557861-1557880 | MS.gene22842:CDS | 20.0% |
| ! | AAATCAAATGAACCGTATTA+AGG | - | chr7.4:1558040-1558059 | MS.gene22842:CDS | 25.0% |
| ! | AACTTAGATATGTCTTTCAA+AGG | - | chr7.4:1558114-1558133 | MS.gene22842:intron | 25.0% |
| ! | AATAAGTTTCATTAATGACC+AGG | - | chr7.4:1559689-1559708 | MS.gene22842:intron | 25.0% |
| ! | ACTTAGTTACATCTTTGTAA+CGG | + | chr7.4:1559457-1559476 | None:intergenic | 25.0% |
| ! | GAAAATTATTGTGATTCATC+TGG | - | chr7.4:1557940-1557959 | MS.gene22842:CDS | 25.0% |
| ! | TATACCATAACTTGACATTA+TGG | - | chr7.4:1557715-1557734 | MS.gene22842:intron | 25.0% |
| ! | TATACCATAATGTCAAGTTA+TGG | + | chr7.4:1557722-1557741 | None:intergenic | 25.0% |
| ! | TATTATTAATGTACAGGTGA+TGG | - | chr7.4:1558869-1558888 | MS.gene22842:intron | 25.0% |
| ! | TCAAAAAACACAAAATGCAA+GGG | + | chr7.4:1557594-1557613 | None:intergenic | 25.0% |
| ! | TGAAACTTATTAGCATTCAA+AGG | + | chr7.4:1559680-1559699 | None:intergenic | 25.0% |
| ! | TTGAGATTTAAACAAACTGA+AGG | + | chr7.4:1559645-1559664 | None:intergenic | 25.0% |
| ! | TTTGTAACACATTACTAAAC+TGG | - | chr7.4:1558259-1558278 | MS.gene22842:CDS | 25.0% |
| !! | ATACTTTCTCTAGAAAATAG+AGG | - | chr7.4:1557984-1558003 | MS.gene22842:CDS | 25.0% |
| !! | ATGATTTGTCAATCATTTGT+TGG | + | chr7.4:1558452-1558471 | None:intergenic | 25.0% |
| !! | CTTCTGAATTTTATGTACAA+CGG | - | chr7.4:1559215-1559234 | MS.gene22842:intron | 25.0% |
| !! | TACTTTCTCTAGAAAATAGA+GGG | - | chr7.4:1557985-1558004 | MS.gene22842:CDS | 25.0% |
| !! | TATGGTTTTCGTGAAAAAAA+GGG | + | chr7.4:1558168-1558187 | None:intergenic | 25.0% |
| !!! | ATATTTTTGCATTGTATGCA+AGG | - | chr7.4:1559619-1559638 | MS.gene22842:intron | 25.0% |
| !!! | GTGTTTTTTGAGATAATAGA+GGG | - | chr7.4:1557603-1557622 | MS.gene22842:intron | 25.0% |
| !!! | TGTGTTTTTTGAGATAATAG+AGG | - | chr7.4:1557602-1557621 | MS.gene22842:intron | 25.0% |
| !!! | TTACTAAACTGGTTTTTCAA+CGG | - | chr7.4:1558270-1558289 | MS.gene22842:intron | 25.0% |
| ACATATTGTTATGTTCGGTA+TGG | + | chr7.4:1558186-1558205 | None:intergenic | 30.0% | |
| AGTTTGTGGAAACCTTAATA+CGG | + | chr7.4:1558055-1558074 | None:intergenic | 30.0% | |
| CAAATAATCAATTTACCGGA+TGG | + | chr7.4:1558371-1558390 | None:intergenic | 30.0% | |
| CTCAAAAAACACAAAATGCA+AGG | + | chr7.4:1557595-1557614 | None:intergenic | 30.0% | |
| GACAATAAAACACCATGTAA+GGG | + | chr7.4:1557766-1557785 | None:intergenic | 30.0% | |
| GAGACATTATGTAACTTGAT+TGG | - | chr7.4:1557656-1557675 | MS.gene22842:intron | 30.0% | |
| TAGAGCAAACAAATCTGATT+AGG | + | chr7.4:1559142-1559161 | None:intergenic | 30.0% | |
| TGACAATAAAACACCATGTA+AGG | + | chr7.4:1557767-1557786 | None:intergenic | 30.0% | |
| TTGACAAATCATCCCAATTT+CGG | - | chr7.4:1558460-1558479 | MS.gene22842:intron | 30.0% | |
| ! | AAATGTTCCTTTTCAGTTTG+TGG | + | chr7.4:1558069-1558088 | None:intergenic | 30.0% |
| ! | ATTTGTCAATCATTTGTTGG+TGG | + | chr7.4:1558449-1558468 | None:intergenic | 30.0% |
| ! | GTATGGTTTTCGTGAAAAAA+AGG | + | chr7.4:1558169-1558188 | None:intergenic | 30.0% |
| !!! | TGTCATTTTCTAGGGATATA+AGG | - | chr7.4:1557870-1557889 | MS.gene22842:CDS | 30.0% |
| AAAACACCATGTAAGGGTTT+AGG | + | chr7.4:1557760-1557779 | None:intergenic | 35.0% | |
| AAGGTTTCCACAAACTGAAA+AGG | - | chr7.4:1558059-1558078 | MS.gene22842:CDS | 35.0% | |
| AATCAATATACCGCTGAGTA+CGG | + | chr7.4:1558304-1558323 | None:intergenic | 35.0% | |
| CCTCTTAAATACCCGAAATT+GGG | + | chr7.4:1558475-1558494 | None:intergenic | 35.0% | |
| CTCAAAACCCCTGTTTAATT+TGG | - | chr7.4:1558533-1558552 | MS.gene22842:intron | 35.0% | |
| GAGGACATCAAGAATGAAAA+TGG | - | chr7.4:1557552-1557571 | MS.gene22842:CDS | 35.0% | |
| TCCTCTTAAATACCCGAAAT+TGG | + | chr7.4:1558476-1558495 | None:intergenic | 35.0% | |
| TGACAAATCATCCCAATTTC+GGG | - | chr7.4:1558461-1558480 | MS.gene22842:intron | 35.0% | |
| TTATTGTGATTCATCTGGTG+TGG | - | chr7.4:1557945-1557964 | MS.gene22842:CDS | 35.0% | |
| ! | ATGTTGCAGCTTTTCTCTAA+TGG | - | chr7.4:1559032-1559051 | MS.gene22842:intron | 35.0% |
| ! | GATGTCTTTTCTTCATTGGT+TGG | - | chr7.4:1558971-1558990 | MS.gene22842:intron | 35.0% |
| ! | GCAGATGTTTTACAAATGCA+GGG | - | chr7.4:1558690-1558709 | MS.gene22842:intron | 35.0% |
| ! | GGTAGATGTCTTTTCTTCAT+TGG | - | chr7.4:1558967-1558986 | MS.gene22842:intron | 35.0% |
| ! | TAGAGTAATCCAAAGCACTT+CGG | + | chr7.4:1558142-1558161 | None:intergenic | 35.0% |
| ! | TGAAGTATTCTATCCGAGAA+TGG | + | chr7.4:1557438-1557457 | None:intergenic | 35.0% |
| ! | TGTTGCAGCTTTTCTCTAAT+GGG | - | chr7.4:1559033-1559052 | MS.gene22842:intron | 35.0% |
| !! | TGTGTTATTTGATCTTGCCA+TGG | - | chr7.4:1558600-1558619 | MS.gene22842:intron | 35.0% |
| AAATTCAGAAGCTCCATGAG+AGG | + | chr7.4:1559206-1559225 | None:intergenic | 40.0% | |
| AAGACATCCAGCAATGCAAT+TGG | + | chr7.4:1559260-1559279 | None:intergenic | 40.0% | |
| AATCAATTTACCGGATGGTC+CGG | + | chr7.4:1558366-1558385 | None:intergenic | 40.0% | |
| ACTTTGTGCTTAAGTGGGTA+CGG | - | chr7.4:1559805-1559824 | MS.gene22842:CDS | 40.0% | |
| ATCCGAGAATGGATAGATAC+TGG | + | chr7.4:1557427-1557446 | None:intergenic | 40.0% | |
| CACCAGTATCTATCCATTCT+CGG | - | chr7.4:1557422-1557441 | MS.gene22842:CDS | 40.0% | |
| GATCCATTGTGAGTCCATTA+TGG | + | chr7.4:1558720-1558739 | None:intergenic | 40.0% | |
| GCAAAATATACCCATGACAC+CGG | - | chr7.4:1559337-1559356 | MS.gene22842:intron | 40.0% | |
| TATGCCTTTACTCCAGCTAA+AGG | + | chr7.4:1559739-1559758 | None:intergenic | 40.0% | |
| TGACTACATGCGTAAACTGT+TGG | + | chr7.4:1558785-1558804 | None:intergenic | 40.0% | |
| TGTGTATTACTTTGATGCCC+CGG | + | chr7.4:1558502-1558521 | None:intergenic | 40.0% | |
| TTCATTAATGACCAGGCATC+AGG | - | chr7.4:1559696-1559715 | MS.gene22842:intron | 40.0% | |
| TTCTCTCCTAAACCCTTACA+TGG | - | chr7.4:1557751-1557770 | MS.gene22842:intron | 40.0% | |
| ! | AAAATGAGCTTTTCGCAGTC+AGG | + | chr7.4:1558940-1558959 | None:intergenic | 40.0% |
| ! | AGCTTTTCTCTAATGGGATG+CGG | - | chr7.4:1559039-1559058 | MS.gene22842:intron | 40.0% |
| ! | CCCAATTTCGGGTATTTAAG+AGG | - | chr7.4:1558472-1558491 | MS.gene22842:intron | 40.0% |
| ! | CGCAGATGTTTTACAAATGC+AGG | - | chr7.4:1558689-1558708 | MS.gene22842:intron | 40.0% |
| !! | TCTCCATAATGGACTCACAA+TGG | - | chr7.4:1558714-1558733 | MS.gene22842:intron | 40.0% |
| AAATGCAGGGCTCTCCATAA+TGG | - | chr7.4:1558703-1558722 | MS.gene22842:intron | 45.0% | |
| AATGACACACGTTCAAGTCG+TGG | - | chr7.4:1558655-1558674 | MS.gene22842:intron | 45.0% | |
| ACCAGATGCAGTGATTCTCA+CGG | + | chr7.4:1559087-1559106 | None:intergenic | 45.0% | |
| AGCAGGGTTCAAGGAAAGAT+CGG | + | chr7.4:1558742-1558761 | None:intergenic | 45.0% | |
| ATAAAACTCCCGCCATAGCA+GGG | + | chr7.4:1558758-1558777 | None:intergenic | 45.0% | |
| ATACCCAAAGCTGGAAGAGA+TGG | - | chr7.4:1559833-1559852 | MS.gene22842:CDS | 45.0% | |
| ATCCAGCAATGCAATTGGTG+AGG | + | chr7.4:1559255-1559274 | None:intergenic | 45.0% | |
| ATTAATGACCAGGCATCAGG+AGG | - | chr7.4:1559699-1559718 | MS.gene22842:intron | 45.0% | |
| CATGCCTTTAGCTGGAGTAA+AGG | - | chr7.4:1559732-1559751 | MS.gene22842:intron | 45.0% | |
| CCGCTAGGCCAAATTAAACA+GGG | + | chr7.4:1558544-1558563 | None:intergenic | 45.0% | |
| CGCTAGGCCAAATTAAACAG+GGG | + | chr7.4:1558543-1558562 | None:intergenic | 45.0% | |
| CGGGTATTTAAGAGGAGAAC+CGG | - | chr7.4:1558480-1558499 | MS.gene22842:intron | 45.0% | |
| CTTTGTGCTTAAGTGGGTAC+GGG | - | chr7.4:1559806-1559825 | MS.gene22842:CDS | 45.0% | |
| GCACGACTTTGTGCTTAAGT+GGG | - | chr7.4:1559800-1559819 | MS.gene22842:CDS | 45.0% | |
| GGGTATTTAAGAGGAGAACC+GGG | - | chr7.4:1558481-1558500 | MS.gene22842:intron | 45.0% | |
| GGTATTTAAGAGGAGAACCG+GGG | - | chr7.4:1558482-1558501 | MS.gene22842:intron | 45.0% | |
| GTTTCTCTTGCATGTTGCAG+AGG | - | chr7.4:1559175-1559194 | MS.gene22842:intron | 45.0% | |
| TACCCAAAGCTGGAAGAGAT+GGG | - | chr7.4:1559834-1559853 | MS.gene22842:CDS | 45.0% | |
| TATAAAACTCCCGCCATAGC+AGG | + | chr7.4:1558759-1558778 | None:intergenic | 45.0% | |
| TCTTTCCTTGAACCCTGCTA+TGG | - | chr7.4:1558743-1558762 | MS.gene22842:intron | 45.0% | |
| TGAAACTCATTCTAACGCCG+AGG | - | chr7.4:1557482-1557501 | MS.gene22842:CDS | 45.0% | |
| TGCACGACTTTGTGCTTAAG+TGG | - | chr7.4:1559799-1559818 | MS.gene22842:CDS | 45.0% | |
| TGCATTGCTGGATGTCTTGA+TGG | - | chr7.4:1559262-1559281 | MS.gene22842:intron | 45.0% | |
| TGCTTGGCTGCATCTATCAA+CGG | + | chr7.4:1559422-1559441 | None:intergenic | 45.0% | |
| ! | GCTTTTCTCTAATGGGATGC+GGG | - | chr7.4:1559040-1559059 | MS.gene22842:intron | 45.0% |
| ! | TGGAGTAAAGGCATACTCAC+AGG | - | chr7.4:1559744-1559763 | MS.gene22842:intron | 45.0% |
| !! | CCCTGTTTAATTTGGCCTAG+CGG | - | chr7.4:1558541-1558560 | MS.gene22842:intron | 45.0% |
| !! | CTCTTCCAGCTTTGGGTATT+GGG | + | chr7.4:1559832-1559851 | None:intergenic | 45.0% |
| !! | TCTCTTCCAGCTTTGGGTAT+TGG | + | chr7.4:1559833-1559852 | None:intergenic | 45.0% |
| AACCTTGAATGTGTGCGCAG+CGG | + | chr7.4:1559893-1559912 | None:intergenic | 50.0% | |
| ACCCAAAGCTGGAAGAGATG+GGG | - | chr7.4:1559835-1559854 | MS.gene22842:CDS | 50.0% | |
| ACCGTGAGAATCACTGCATC+TGG | - | chr7.4:1559083-1559102 | MS.gene22842:intron | 50.0% | |
| ACTCATTCTAACGCCGAGGA+TGG | - | chr7.4:1557486-1557505 | MS.gene22842:CDS | 50.0% | |
| AGACACTGGAAGGAAGCTCT+AGG | + | chr7.4:1559379-1559398 | None:intergenic | 50.0% | |
| AGCATCAGCCATCAAGACAC+TGG | + | chr7.4:1559393-1559412 | None:intergenic | 50.0% | |
| AGGTAGAGCAATGCAGTCTC+CGG | + | chr7.4:1559359-1559378 | None:intergenic | 50.0% | |
| ATATACCGCTGAGTACGGTG+TGG | + | chr7.4:1558299-1558318 | None:intergenic | 50.0% | |
| ATGGTTCCACAAGGGCAGAT+TGG | - | chr7.4:1557505-1557524 | MS.gene22842:CDS | 50.0% | |
| ATTTACCGGATGGTCCGGTT+CGG | + | chr7.4:1558361-1558380 | None:intergenic | 50.0% | |
| CATCTTTGTAACGGCCAGCA+AGG | + | chr7.4:1559448-1559467 | None:intergenic | 50.0% | |
| CCACGACAAGAGGATAAGAG+AGG | - | chr7.4:1557533-1557552 | MS.gene22842:CDS | 50.0% | |
| CCTCTCTTATCCTCTTGTCG+TGG | + | chr7.4:1557536-1557555 | None:intergenic | 50.0% | |
| GACCTCACCAATTGCATTGC+TGG | - | chr7.4:1559250-1559269 | MS.gene22842:intron | 50.0% | |
| GCCGCTAGGCCAAATTAAAC+AGG | + | chr7.4:1558545-1558564 | None:intergenic | 50.0% | |
| GCTTCCTTCCAGTGTCTTGA+TGG | - | chr7.4:1559382-1559401 | MS.gene22842:intron | 50.0% | |
| GTGCATGACATACTGCAGCA+GGG | - | chr7.4:1559310-1559329 | MS.gene22842:intron | 50.0% | |
| TCAGCCATCAAGACACTGGA+AGG | + | chr7.4:1559389-1559408 | None:intergenic | 50.0% | |
| TCTTGCCATGGCTCAACGAT+CGG | - | chr7.4:1558612-1558631 | MS.gene22842:intron | 50.0% | |
| TGGTTCCACAAGGGCAGATT+GGG | - | chr7.4:1557506-1557525 | MS.gene22842:CDS | 50.0% | |
| TTCCTTGAACCCTGCTATGG+CGG | - | chr7.4:1558746-1558765 | MS.gene22842:intron | 50.0% | |
| ! | CTGATGGACATGCCTTTAGC+TGG | - | chr7.4:1559724-1559743 | MS.gene22842:intron | 50.0% |
| ! | TATTCATTGGTTGCGCGCAG+CGG | - | chr7.4:1558396-1558415 | MS.gene22842:CDS | 50.0% |
| !! | AATGCAGTCTCCGGTGTCAT+GGG | + | chr7.4:1559350-1559369 | None:intergenic | 50.0% |
| !! | TCAAAGGTGCCGAAGTGCTT+TGG | - | chr7.4:1558130-1558149 | MS.gene22842:intron | 50.0% |
| !! | TCAGATTTGAAAGCGCCGCT+AGG | + | chr7.4:1558559-1558578 | None:intergenic | 50.0% |
| ACTCACAGGTGATGAGCTGC+AGG | - | chr7.4:1559758-1559777 | MS.gene22842:CDS | 55.0% | |
| ATCCGCTGCGCACACATTCA+AGG | - | chr7.4:1559888-1559907 | MS.gene22842:CDS | 55.0% | |
| CAACTCCGATCGTTGAGCCA+TGG | + | chr7.4:1558620-1558639 | None:intergenic | 55.0% | |
| CCCAAAGCTGGAAGAGATGG+GGG | - | chr7.4:1559836-1559855 | MS.gene22842:CDS | 55.0% | |
| CCCCCATCTCTTCCAGCTTT+GGG | + | chr7.4:1559839-1559858 | None:intergenic | 55.0% | |
| CGCAACCTCGAATCTGTCTG+CGG | + | chr7.4:1559288-1559307 | None:intergenic | 55.0% | |
| CGTGCATGACATACTGCAGC+AGG | - | chr7.4:1559309-1559328 | MS.gene22842:intron | 55.0% | |
| CTAATGGGATGCGGGAGTCA+GGG | - | chr7.4:1559048-1559067 | MS.gene22842:intron | 55.0% | |
| GCAGCCAAGCAATACCTTGC+TGG | - | chr7.4:1559431-1559450 | MS.gene22842:intron | 55.0% | |
| GGATACCACACCGTACTCAG+CGG | - | chr7.4:1558291-1558310 | MS.gene22842:intron | 55.0% | |
| TCCCCCATCTCTTCCAGCTT+TGG | + | chr7.4:1559840-1559859 | None:intergenic | 55.0% | |
| TCCTTGAACCCTGCTATGGC+GGG | - | chr7.4:1558747-1558766 | MS.gene22842:intron | 55.0% | |
| TCTAATGGGATGCGGGAGTC+AGG | - | chr7.4:1559047-1559066 | MS.gene22842:intron | 55.0% | |
| TGAGCTGCAGGTTGCATCTG+AGG | - | chr7.4:1559770-1559789 | MS.gene22842:CDS | 55.0% | |
| TGCAGAGGAAGCTCCTCTCA+TGG | - | chr7.4:1559190-1559209 | MS.gene22842:intron | 55.0% | |
| TGCCCTTGTGGAACCATCCT+CGG | + | chr7.4:1557502-1557521 | None:intergenic | 55.0% | |
| TTTGTGACACGCTGCCGAAC+CGG | - | chr7.4:1558344-1558363 | MS.gene22842:intron | 55.0% | |
| ! | CAATGCAGTCTCCGGTGTCA+TGG | + | chr7.4:1559351-1559370 | None:intergenic | 55.0% |
| !! | ACGGCCAGCAAGGTATTGCT+TGG | + | chr7.4:1559438-1559457 | None:intergenic | 55.0% |
| !! | ATTGGGCTAGCCACGACAAG+AGG | - | chr7.4:1557523-1557542 | MS.gene22842:CDS | 55.0% |
| ACGCCGAGGATGGTTCCACA+AGG | - | chr7.4:1557496-1557515 | MS.gene22842:CDS | 60.0% | |
| ACGGGCCCAATACCCAAAGC+TGG | - | chr7.4:1559824-1559843 | MS.gene22842:CDS | 60.0% | |
| AGCGGGCAAGCTTTGCTTCG+AGG | + | chr7.4:1559866-1559885 | None:intergenic | 60.0% | |
| CAGGCATCAGGAGGAGCTGA+TGG | - | chr7.4:1559708-1559727 | MS.gene22842:intron | 60.0% | |
| CATCAGCTCCTCCTGATGCC+TGG | + | chr7.4:1559710-1559729 | None:intergenic | 60.0% | |
| CGCCGAGGATGGTTCCACAA+GGG | - | chr7.4:1557497-1557516 | MS.gene22842:CDS | 60.0% | |
| GATGGCCGCAGACAGATTCG+AGG | - | chr7.4:1559280-1559299 | MS.gene22842:intron | 60.0% | |
| GCTAGCCCAATCTGCCCTTG+TGG | + | chr7.4:1557514-1557533 | None:intergenic | 60.0% | |
| TCCCGCCATAGCAGGGTTCA+AGG | + | chr7.4:1558751-1558770 | None:intergenic | 60.0% | |
| TGTGTGCGCAGCGGATGAAG+CGG | + | chr7.4:1559884-1559903 | None:intergenic | 60.0% | |
| GTGTGCGCAGCGGATGAAGC+GGG | + | chr7.4:1559883-1559902 | None:intergenic | 65.0% | |
| CGCTGCCGAACCGGACCATC+CGG | - | chr7.4:1558353-1558372 | MS.gene22842:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 1557408 | 1559914 | 1557408 | ID=MS.gene22842 |
| chr7.4 | mRNA | 1557408 | 1559914 | 1557408 | ID=MS.gene22842.t1;Parent=MS.gene22842 |
| chr7.4 | exon | 1559749 | 1559914 | 1559749 | ID=MS.gene22842.t1.exon1;Parent=MS.gene22842.t1 |
| chr7.4 | CDS | 1559749 | 1559914 | 1559749 | ID=cds.MS.gene22842.t1;Parent=MS.gene22842.t1 |
| chr7.4 | exon | 1558355 | 1558437 | 1558355 | ID=MS.gene22842.t1.exon2;Parent=MS.gene22842.t1 |
| chr7.4 | CDS | 1558355 | 1558437 | 1558355 | ID=cds.MS.gene22842.t1;Parent=MS.gene22842.t1 |
| chr7.4 | exon | 1558218 | 1558281 | 1558218 | ID=MS.gene22842.t1.exon3;Parent=MS.gene22842.t1 |
| chr7.4 | CDS | 1558218 | 1558281 | 1558218 | ID=cds.MS.gene22842.t1;Parent=MS.gene22842.t1 |
| chr7.4 | exon | 1557856 | 1558127 | 1557856 | ID=MS.gene22842.t1.exon4;Parent=MS.gene22842.t1 |
| chr7.4 | CDS | 1557856 | 1558127 | 1557856 | ID=cds.MS.gene22842.t1;Parent=MS.gene22842.t1 |
| chr7.4 | exon | 1557408 | 1557611 | 1557408 | ID=MS.gene22842.t1.exon5;Parent=MS.gene22842.t1 |
| chr7.4 | CDS | 1557408 | 1557611 | 1557408 | ID=cds.MS.gene22842.t1;Parent=MS.gene22842.t1 |
| Gene Sequence |
| Protein sequence |
