Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22857.t1 | XP_024626902.1 | 68.7 | 361 | 15 | 2 | 1 | 323 | 1 | 301 | 9.00E-127 | 463.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22857.t1 | Q9FY93 | 32.0 | 147 | 87 | 6 | 11 | 154 | 20 | 156 | 2.8e-12 | 74.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22857.t1 | G7L2Y2 | 94.0 | 200 | 12 | 0 | 1 | 200 | 1 | 200 | 8.2e-106 | 393.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene22857.t1 | TF | NAC |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22857.t1 | MTR_7g116460 | 94.000 | 200 | 12 | 0 | 1 | 200 | 1 | 200 | 1.09e-140 | 396 |
| MS.gene22857.t1 | MTR_1g045470 | 52.035 | 344 | 119 | 7 | 1 | 320 | 1 | 322 | 2.28e-104 | 309 |
| MS.gene22857.t1 | MTR_1g053575 | 47.472 | 356 | 113 | 11 | 1 | 319 | 1 | 319 | 2.87e-91 | 275 |
| MS.gene22857.t1 | MTR_1g019820 | 45.267 | 243 | 71 | 9 | 95 | 309 | 2 | 210 | 1.19e-42 | 147 |
| MS.gene22857.t1 | MTR_7g100990 | 32.075 | 159 | 89 | 6 | 11 | 159 | 17 | 166 | 6.98e-16 | 77.8 |
| MS.gene22857.t1 | MTR_7g005280 | 31.507 | 146 | 88 | 4 | 11 | 154 | 21 | 156 | 3.45e-15 | 74.7 |
| MS.gene22857.t1 | MTR_7g085220 | 30.952 | 168 | 88 | 7 | 11 | 160 | 14 | 171 | 5.14e-12 | 66.2 |
| MS.gene22857.t1 | MTR_2157s0010 | 31.250 | 160 | 85 | 8 | 11 | 154 | 14 | 164 | 5.63e-12 | 65.5 |
| MS.gene22857.t1 | MTR_8g023930 | 26.236 | 263 | 152 | 9 | 11 | 249 | 30 | 274 | 5.88e-12 | 66.6 |
| MS.gene22857.t1 | MTR_1g090723 | 31.282 | 195 | 100 | 11 | 11 | 192 | 14 | 187 | 1.13e-11 | 65.9 |
| MS.gene22857.t1 | MTR_3g088110 | 30.952 | 168 | 94 | 8 | 11 | 168 | 13 | 168 | 1.25e-11 | 64.7 |
| MS.gene22857.t1 | MTR_1g090723 | 31.282 | 195 | 100 | 11 | 11 | 192 | 14 | 187 | 1.29e-11 | 65.9 |
| MS.gene22857.t1 | MTR_2g079990 | 34.868 | 152 | 84 | 8 | 11 | 157 | 22 | 163 | 1.44e-11 | 65.1 |
| MS.gene22857.t1 | MTR_1g090723 | 31.122 | 196 | 100 | 11 | 11 | 192 | 14 | 188 | 1.60e-11 | 65.5 |
| MS.gene22857.t1 | MTR_5g041940 | 29.834 | 181 | 106 | 8 | 11 | 180 | 9 | 179 | 1.99e-11 | 63.9 |
| MS.gene22857.t1 | MTR_8g094580 | 32.184 | 174 | 95 | 9 | 11 | 173 | 13 | 174 | 2.86e-11 | 63.5 |
| MS.gene22857.t1 | MTR_6g477900 | 32.468 | 154 | 90 | 8 | 11 | 158 | 12 | 157 | 3.33e-11 | 62.8 |
| MS.gene22857.t1 | MTR_8g023900 | 30.675 | 163 | 91 | 8 | 11 | 165 | 199 | 347 | 5.60e-11 | 63.5 |
| MS.gene22857.t1 | MTR_8g467490 | 27.586 | 174 | 102 | 6 | 11 | 169 | 20 | 184 | 6.92e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22857.t1 | AT5G13180 | 31.973 | 147 | 87 | 6 | 11 | 154 | 20 | 156 | 5.77e-15 | 73.9 |
| MS.gene22857.t1 | AT3G15510 | 30.058 | 173 | 97 | 6 | 11 | 167 | 23 | 187 | 7.73e-14 | 72.0 |
| MS.gene22857.t1 | AT2G33480 | 31.507 | 146 | 86 | 4 | 11 | 154 | 21 | 154 | 3.97e-13 | 68.9 |
| MS.gene22857.t1 | AT5G62380 | 30.233 | 172 | 99 | 7 | 11 | 173 | 13 | 172 | 9.41e-13 | 68.6 |
| MS.gene22857.t1 | AT5G62380 | 30.233 | 172 | 99 | 7 | 11 | 173 | 13 | 172 | 9.41e-13 | 68.6 |
| MS.gene22857.t1 | AT3G15500 | 33.728 | 169 | 95 | 8 | 11 | 173 | 20 | 177 | 1.80e-12 | 67.8 |
| MS.gene22857.t1 | AT4G27410 | 32.298 | 161 | 94 | 7 | 11 | 166 | 20 | 170 | 3.42e-12 | 66.6 |
| MS.gene22857.t1 | AT3G10480 | 32.468 | 154 | 90 | 9 | 11 | 158 | 33 | 178 | 4.34e-12 | 67.0 |
| MS.gene22857.t1 | AT5G63790 | 32.680 | 153 | 84 | 6 | 11 | 154 | 66 | 208 | 5.89e-12 | 66.2 |
| MS.gene22857.t1 | AT5G63790 | 32.680 | 153 | 84 | 6 | 11 | 154 | 56 | 198 | 6.00e-12 | 65.9 |
| MS.gene22857.t1 | AT1G77450 | 32.258 | 155 | 80 | 8 | 11 | 154 | 16 | 156 | 6.63e-12 | 65.1 |
| MS.gene22857.t1 | AT3G04070 | 33.577 | 137 | 77 | 6 | 11 | 141 | 16 | 144 | 6.91e-12 | 66.2 |
| MS.gene22857.t1 | AT5G08790 | 27.984 | 243 | 134 | 9 | 11 | 238 | 13 | 229 | 1.63e-11 | 64.3 |
| MS.gene22857.t1 | AT3G10480 | 32.258 | 155 | 90 | 10 | 11 | 158 | 33 | 179 | 3.61e-11 | 64.3 |
| MS.gene22857.t1 | AT1G26870 | 26.471 | 204 | 126 | 7 | 11 | 199 | 22 | 216 | 5.49e-11 | 63.5 |
| MS.gene22857.t1 | AT5G04410 | 29.016 | 193 | 111 | 10 | 11 | 194 | 15 | 190 | 6.11e-11 | 63.9 |
Find 57 sgRNAs with CRISPR-Local
Find 197 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTGGCAGATTTCTTCTTTA+AGG | 0.196237 | 7.4:-1766705 | None:intergenic |
| CAAGTTGATTTCTTGAATTT+TGG | 0.219784 | 7.4:-1769516 | None:intergenic |
| CCAAAAGAGACCATCCTTCT+AGG | 0.232822 | 7.4:+1768634 | MS.gene22857:CDS |
| TAAAGAATCCTTGGGAGATT+TGG | 0.238348 | 7.4:+1766627 | MS.gene22857:CDS |
| TAAGACTTTGTTAGTCTCTT+TGG | 0.241064 | 7.4:-1766798 | None:intergenic |
| ACAAATAATACTTACACTTT+TGG | 0.244406 | 7.4:-1768671 | None:intergenic |
| TCTCGTTCAACATTAATTCT+TGG | 0.268870 | 7.4:-1767306 | None:intergenic |
| CCTAGAAGGATGGTCTCTTT+TGG | 0.321885 | 7.4:-1768634 | None:intergenic |
| AAAGAGACTAACAAAGTCTT+AGG | 0.324892 | 7.4:+1766800 | MS.gene22857:CDS |
| GCTATTCATTAAGTGAGAAT+TGG | 0.337832 | 7.4:-1767274 | None:intergenic |
| AAACGCTTGATTCGTACTAT+TGG | 0.347420 | 7.4:+1766731 | MS.gene22857:CDS |
| AAAGAATCCTTGGGAGATTT+GGG | 0.358697 | 7.4:+1766628 | MS.gene22857:CDS |
| GTTCTTGACTACGAATTGTT+TGG | 0.361023 | 7.4:+1766599 | MS.gene22857:CDS |
| TTCAGGAGAACAATAATGTT+TGG | 0.367234 | 7.4:+1769476 | MS.gene22857:intron |
| TTAAGGTAGTGAAGAAATAT+AGG | 0.389832 | 7.4:-1766688 | None:intergenic |
| TCTGCACAGAACATAGTTCT+TGG | 0.390732 | 7.4:-1767217 | None:intergenic |
| AATTCAAGAAATCAACTTGA+TGG | 0.411296 | 7.4:+1769520 | MS.gene22857:CDS |
| TTGGTATTGTAAAGAATCCT+TGG | 0.419593 | 7.4:+1766618 | MS.gene22857:CDS |
| TTTGTCGCTTTCCGCATGTC+CGG | 0.421882 | 7.4:-1767352 | None:intergenic |
| CAAGGAAAGACGGTTGTTCC+CGG | 0.441458 | 7.4:+1767333 | MS.gene22857:CDS |
| TGGTAGCTTCAGGTCCTAGA+AGG | 0.459487 | 7.4:-1768648 | None:intergenic |
| AATCAAATGGTGAACACAAA+AGG | 0.463163 | 7.4:+1768545 | MS.gene22857:CDS |
| GGAGAACAATAATGTTTGGT+TGG | 0.470777 | 7.4:+1769480 | MS.gene22857:intron |
| TGGTATTGTAAAGAATCCTT+GGG | 0.476614 | 7.4:+1766619 | MS.gene22857:CDS |
| TTGTCGCTTTCCGCATGTCC+GGG | 0.489350 | 7.4:-1767351 | None:intergenic |
| AGAATTAATGTTGAACGAGA+TGG | 0.489727 | 7.4:+1767309 | MS.gene22857:CDS |
| TCATTAAGTGAGAATTGGAT+TGG | 0.490569 | 7.4:-1767269 | None:intergenic |
| GTCAAGAACAGTGATATAGT+TGG | 0.497277 | 7.4:-1766585 | None:intergenic |
| ATGTTTGATTAACAATACTT+TGG | 0.503867 | 7.4:+1766904 | MS.gene22857:CDS |
| GCACCTTCTCACTCATATTG+TGG | 0.509291 | 7.4:+1766659 | MS.gene22857:CDS |
| TCTCACTTAATGAATAGCAT+TGG | 0.510999 | 7.4:+1767279 | MS.gene22857:CDS |
| TCAAGAACAGTGATATAGTT+GGG | 0.517379 | 7.4:-1766584 | None:intergenic |
| GCAAGATCCATGCACCATCA+TGG | 0.532431 | 7.4:-1766862 | None:intergenic |
| GAATTAATGTTGAACGAGAT+GGG | 0.535978 | 7.4:+1767310 | MS.gene22857:CDS |
| TTGATTCGTACTATTGGAAG+TGG | 0.541617 | 7.4:+1766737 | MS.gene22857:CDS |
| CGGATAAGTTCATCATCAGT+AGG | 0.544033 | 7.4:-1766524 | None:intergenic |
| ACAGTGATATAGTTGGGCAC+TGG | 0.565126 | 7.4:-1766578 | None:intergenic |
| GAACTGAGAGAGAAGAATGA+AGG | 0.573202 | 7.4:+1769691 | MS.gene22857:CDS |
| AACTCTTCCCAAATCTCCCA+AGG | 0.573940 | 7.4:-1766635 | None:intergenic |
| TGGTGAACACAAAAGGAGAA+AGG | 0.575495 | 7.4:+1768552 | MS.gene22857:CDS |
| AAGAGTAACACTTTCCATGA+TGG | 0.580464 | 7.4:+1766848 | MS.gene22857:CDS |
| AGCTTCAGGTCCTAGAAGGA+TGG | 0.590695 | 7.4:-1768644 | None:intergenic |
| ACACTTTCCATGATGGTGCA+TGG | 0.590768 | 7.4:+1766855 | MS.gene22857:CDS |
| ATTGGAAGTGGTACGTGGGA+AGG | 0.591301 | 7.4:+1766749 | MS.gene22857:CDS |
| GACGGTTGTTCCCGGACATG+CGG | 0.591474 | 7.4:+1767341 | MS.gene22857:CDS |
| TAATTCAGAGCCTCAATGCA+AGG | 0.597876 | 7.4:+1768579 | MS.gene22857:CDS |
| TTTCCACAATATGAGTGAGA+AGG | 0.600309 | 7.4:-1766662 | None:intergenic |
| AATGTTGAACGAGATGGGCA+AGG | 0.603096 | 7.4:+1767315 | MS.gene22857:CDS |
| TCAAGAAATCAACTTGATGG+TGG | 0.603787 | 7.4:+1769523 | MS.gene22857:CDS |
| TGTTAATCAAACATTCAGCA+AGG | 0.609040 | 7.4:-1766895 | None:intergenic |
| ACGAGATGGGCAAGGAAAGA+CGG | 0.618373 | 7.4:+1767323 | MS.gene22857:CDS |
| ACGAATCAAGCGTTTACTAG+TGG | 0.633781 | 7.4:-1766723 | None:intergenic |
| GTACTATTGGAAGTGGTACG+TGG | 0.636891 | 7.4:+1766744 | MS.gene22857:CDS |
| TACTATTGGAAGTGGTACGT+GGG | 0.651315 | 7.4:+1766745 | MS.gene22857:CDS |
| TGGAAATATCAAGACCGATG+TGG | 0.685625 | 7.4:+1769543 | MS.gene22857:CDS |
| ACGTGGGAAGGTGAAGACAC+CGG | 0.689724 | 7.4:+1766761 | MS.gene22857:CDS |
| TGAACACAAAAGGAGAAAGG+TGG | 0.707097 | 7.4:+1768555 | MS.gene22857:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAATATAACAAAAAAAAAA+CGG | + | chr7.4:1767957-1767976 | MS.gene22857:intron | 10.0% |
| !!! | AATTATCTTATAACTTTTTA+TGG | + | chr7.4:1769041-1769060 | MS.gene22857:intron | 10.0% |
| !! | AAAATTATAGTTATAGATGT+TGG | + | chr7.4:1767772-1767791 | MS.gene22857:intron | 15.0% |
| !! | AAAATTGTAGGTATAAATAT+TGG | + | chr7.4:1767797-1767816 | MS.gene22857:intron | 15.0% |
| !! | AGTTCCTTAAAAAAATTATT+GGG | - | chr7.4:1769751-1769770 | None:intergenic | 15.0% |
| !! | ATTTATATTGTTAGTTAGTT+AGG | + | chr7.4:1766942-1766961 | MS.gene22857:intron | 15.0% |
| !! | CATAAAATAAACTTAAACAT+TGG | - | chr7.4:1767071-1767090 | None:intergenic | 15.0% |
| !! | TTGTTAATAGTTAAATAATG+AGG | - | chr7.4:1768898-1768917 | None:intergenic | 15.0% |
| !!! | CAATGTTTAAGTTTATTTTA+TGG | + | chr7.4:1767069-1767088 | MS.gene22857:intron | 15.0% |
| !!! | CAATTTTTGAATTTCAATTT+TGG | - | chr7.4:1769407-1769426 | None:intergenic | 15.0% |
| !!! | CATCAAAATTTGATTTTTAA+TGG | - | chr7.4:1768444-1768463 | None:intergenic | 15.0% |
| !!! | GAATAAGTTGTTTTAAATTT+TGG | - | chr7.4:1769340-1769359 | None:intergenic | 15.0% |
| !!! | GCTACTATTTTTTTTTTTTA+AGG | + | chr7.4:1767402-1767421 | MS.gene22857:intron | 15.0% |
| !! | ACTTAGAATTTCTTGAAAAT+AGG | - | chr7.4:1768068-1768087 | None:intergenic | 20.0% |
| !! | ATAATAGAGAGAAAAAAGAA+AGG | - | chr7.4:1768815-1768834 | None:intergenic | 20.0% |
| !! | ATCATCTTCTTTGTTAAATT+TGG | - | chr7.4:1769593-1769612 | None:intergenic | 20.0% |
| !! | ATGTTTGATTAACAATACTT+TGG | + | chr7.4:1766904-1766923 | MS.gene22857:CDS | 20.0% |
| !! | CAGTTCCTTAAAAAAATTAT+TGG | - | chr7.4:1769752-1769771 | None:intergenic | 20.0% |
| !! | CTACTTATTTATCTTGAAAA+AGG | - | chr7.4:1767646-1767665 | None:intergenic | 20.0% |
| !! | TACCTGACAAAATAATAAAA+GGG | - | chr7.4:1767604-1767623 | None:intergenic | 20.0% |
| !! | TTACATATCGTCTAAAAAAA+AGG | - | chr7.4:1768997-1769016 | None:intergenic | 20.0% |
| !!! | ACAAATAATACTTACACTTT+TGG | - | chr7.4:1768674-1768693 | None:intergenic | 20.0% |
| !!! | ATTTTGCATTCTTGATTTTT+AGG | + | chr7.4:1768477-1768496 | MS.gene22857:intron | 20.0% |
| !!! | CTTTTTCAAGATAAATAAGT+AGG | + | chr7.4:1767644-1767663 | MS.gene22857:intron | 20.0% |
| !!! | TATTCGTTTGTTATATGTTA+AGG | + | chr7.4:1766996-1767015 | MS.gene22857:intron | 20.0% |
| !!! | TATTGTGAATTTTATTGTAG+AGG | - | chr7.4:1766556-1766575 | None:intergenic | 20.0% |
| !!! | TTGTTAAATTTGGAATCTAT+TGG | - | chr7.4:1769583-1769602 | None:intergenic | 20.0% |
| !!! | TTTTGCATTCTTGATTTTTA+GGG | + | chr7.4:1768478-1768497 | MS.gene22857:intron | 20.0% |
| !!! | TTTTGCATTTTCATTTTTTC+AGG | + | chr7.4:1769459-1769478 | MS.gene22857:intron | 20.0% |
| ! | AAATGCATTGTTATATACGT+GGG | - | chr7.4:1767693-1767712 | None:intergenic | 25.0% |
| ! | AACAAAAATTAAAACGAGGT+GGG | - | chr7.4:1767039-1767058 | None:intergenic | 25.0% |
| ! | AACATGGATACCAAATATAA+TGG | - | chr7.4:1768292-1768311 | None:intergenic | 25.0% |
| ! | AAGATAAATAAGTAGGTATC+CGG | + | chr7.4:1767651-1767670 | MS.gene22857:intron | 25.0% |
| ! | AATGCAAAAGCTCAATAATA+AGG | - | chr7.4:1769448-1769467 | None:intergenic | 25.0% |
| ! | AATTCAAGAAATCAACTTGA+TGG | + | chr7.4:1769520-1769539 | MS.gene22857:CDS | 25.0% |
| ! | AATTCGACTTCCATTATATT+TGG | + | chr7.4:1768279-1768298 | MS.gene22857:intron | 25.0% |
| ! | ATAAAAAAACGATTTCGCTT+TGG | + | chr7.4:1766824-1766843 | MS.gene22857:CDS | 25.0% |
| ! | ATAAATTTGAGCAAAAGGAT+TGG | - | chr7.4:1768344-1768363 | None:intergenic | 25.0% |
| ! | CTACCTGACAAAATAATAAA+AGG | - | chr7.4:1767605-1767624 | None:intergenic | 25.0% |
| ! | GTTCAACAAAAATTAAAACG+AGG | - | chr7.4:1767043-1767062 | None:intergenic | 25.0% |
| ! | TAAAAAAACGATTTCGCTTT+GGG | + | chr7.4:1766825-1766844 | MS.gene22857:CDS | 25.0% |
| ! | TAAATTTGAGCAAAAGGATT+GGG | - | chr7.4:1768343-1768362 | None:intergenic | 25.0% |
| ! | TAACAAATGAACGTATGTAA+GGG | + | chr7.4:1768912-1768931 | MS.gene22857:intron | 25.0% |
| ! | TAATACATCAACAAAATCTC+TGG | - | chr7.4:1768707-1768726 | None:intergenic | 25.0% |
| ! | TCCAATCACAATAACAAATT+AGG | - | chr7.4:1768115-1768134 | None:intergenic | 25.0% |
| ! | TTAACAAATGAACGTATGTA+AGG | + | chr7.4:1768911-1768930 | MS.gene22857:intron | 25.0% |
| ! | TTAAGGTAGTGAAGAAATAT+AGG | - | chr7.4:1766691-1766710 | None:intergenic | 25.0% |
| ! | TTTATTATTAACAGCCAATC+AGG | - | chr7.4:1767443-1767462 | None:intergenic | 25.0% |
| !! | AATAATACTTACACTTTTGG+TGG | - | chr7.4:1768671-1768690 | None:intergenic | 25.0% |
| !! | AATATAATGGAAGTCGAATT+TGG | - | chr7.4:1768279-1768298 | None:intergenic | 25.0% |
| !! | AGCAGTTTTTATAAAAGAAC+TGG | - | chr7.4:1768022-1768041 | None:intergenic | 25.0% |
| !! | ATATAATGGAAGTCGAATTT+GGG | - | chr7.4:1768278-1768297 | None:intergenic | 25.0% |
| !! | TAGATGTTGGTTAAAATTGT+AGG | + | chr7.4:1767785-1767804 | MS.gene22857:intron | 25.0% |
| !! | TTTTAATGGTTGAAAAGAAG+AGG | - | chr7.4:1768430-1768449 | None:intergenic | 25.0% |
| !! | TTTTATTGTAGAGGAATGAT+CGG | - | chr7.4:1766547-1766566 | None:intergenic | 25.0% |
| !! | TTTTTGATCAATAAGAAGAG+AGG | + | chr7.4:1768834-1768853 | MS.gene22857:intron | 25.0% |
| !!! | ATCCCTTTTATTATTTTGTC+AGG | + | chr7.4:1767599-1767618 | MS.gene22857:intron | 25.0% |
| !!! | CAAGTTGATTTCTTGAATTT+TGG | - | chr7.4:1769519-1769538 | None:intergenic | 25.0% |
| !!! | GACTGTTAATTTGTAACAAA+CGG | + | chr7.4:1767858-1767877 | MS.gene22857:intron | 25.0% |
| !!! | GCTTCCCAATAATTTTTTTA+AGG | + | chr7.4:1769744-1769763 | MS.gene22857:CDS | 25.0% |
| !!! | GTTTTTTTCTTTCTTTATGC+AGG | + | chr7.4:1767194-1767213 | MS.gene22857:intron | 25.0% |
| !!! | TAGTTTTTTCTGTTACACTT+TGG | + | chr7.4:1768966-1768985 | MS.gene22857:intron | 25.0% |
| !!! | TCAAATTGACATTTTTTCCT+TGG | + | chr7.4:1767134-1767153 | MS.gene22857:intron | 25.0% |
| !!! | TTTTTTTAAGGAACTGTTGT+TGG | + | chr7.4:1769756-1769775 | MS.gene22857:CDS | 25.0% |
| AAAAGAAGAGGAACATTGAA+AGG | - | chr7.4:1768418-1768437 | None:intergenic | 30.0% | |
| AAAGAGACTAACAAAGTCTT+AGG | + | chr7.4:1766800-1766819 | MS.gene22857:CDS | 30.0% | |
| AATAGATTATGTTGCCTGAT+TGG | + | chr7.4:1767426-1767445 | MS.gene22857:intron | 30.0% | |
| AATCAAATGGTGAACACAAA+AGG | + | chr7.4:1768545-1768564 | MS.gene22857:CDS | 30.0% | |
| AATGCATTGTTATATACGTG+GGG | - | chr7.4:1767692-1767711 | None:intergenic | 30.0% | |
| AGAATTAATGTTGAACGAGA+TGG | + | chr7.4:1767309-1767328 | MS.gene22857:CDS | 30.0% | |
| AGATAAATAAGTAGGTATCC+GGG | + | chr7.4:1767652-1767671 | MS.gene22857:intron | 30.0% | |
| AGGATTGATATAGATGAACA+TGG | - | chr7.4:1768308-1768327 | None:intergenic | 30.0% | |
| AGTGTAACAGAAAAAACTAG+TGG | - | chr7.4:1768965-1768984 | None:intergenic | 30.0% | |
| ATAACAAACGAATACATGCT+CGG | - | chr7.4:1766990-1767009 | None:intergenic | 30.0% | |
| ATAGAGAGAAAAAAGAAAGG+AGG | - | chr7.4:1768812-1768831 | None:intergenic | 30.0% | |
| CAACAAAAATTAAAACGAGG+TGG | - | chr7.4:1767040-1767059 | None:intergenic | 30.0% | |
| GAAATGCATTGTTATATACG+TGG | - | chr7.4:1767694-1767713 | None:intergenic | 30.0% | |
| GAACCAAAAAGTCAATCAAA+TGG | + | chr7.4:1768532-1768551 | MS.gene22857:CDS | 30.0% | |
| GAATTAATGTTGAACGAGAT+GGG | + | chr7.4:1767310-1767329 | MS.gene22857:CDS | 30.0% | |
| GCTATTCATTAAGTGAGAAT+TGG | - | chr7.4:1767277-1767296 | None:intergenic | 30.0% | |
| GTGTCATAAATTTGAGCAAA+AGG | - | chr7.4:1768349-1768368 | None:intergenic | 30.0% | |
| TCAAGAACAGTGATATAGTT+GGG | - | chr7.4:1766587-1766606 | None:intergenic | 30.0% | |
| TCATTAAGTGAGAATTGGAT+TGG | - | chr7.4:1767272-1767291 | None:intergenic | 30.0% | |
| TCTCACTTAATGAATAGCAT+TGG | + | chr7.4:1767279-1767298 | MS.gene22857:CDS | 30.0% | |
| TCTCGTTCAACATTAATTCT+TGG | - | chr7.4:1767309-1767328 | None:intergenic | 30.0% | |
| TGGTATTGTAAAGAATCCTT+GGG | + | chr7.4:1766619-1766638 | MS.gene22857:CDS | 30.0% | |
| TGGTTCCTAACAAAAAGAAT+CGG | - | chr7.4:1768002-1768021 | None:intergenic | 30.0% | |
| TGTTAATCAAACATTCAGCA+AGG | - | chr7.4:1766898-1766917 | None:intergenic | 30.0% | |
| TTCAGGAGAACAATAATGTT+TGG | + | chr7.4:1769476-1769495 | MS.gene22857:intron | 30.0% | |
| TTGGTATTGTAAAGAATCCT+TGG | + | chr7.4:1766618-1766637 | MS.gene22857:CDS | 30.0% | |
| TTTGGGTAAAATGTGGAATT+TGG | - | chr7.4:1768261-1768280 | None:intergenic | 30.0% | |
| ! | ACATACTACTATTTTGTCCT+TGG | - | chr7.4:1769135-1769154 | None:intergenic | 30.0% |
| ! | CATACTACTATTTTGTCCTT+GGG | - | chr7.4:1769134-1769153 | None:intergenic | 30.0% |
| ! | GATTTTATGCATTCAAGACT+TGG | + | chr7.4:1767496-1767515 | MS.gene22857:intron | 30.0% |
| ! | TAAGACTTTGTTAGTCTCTT+TGG | - | chr7.4:1766801-1766820 | None:intergenic | 30.0% |
| ! | TATTTTGTCAGGTAGTTTAG+TGG | + | chr7.4:1767610-1767629 | MS.gene22857:intron | 30.0% |
| ! | TTTGGCAACTATTCTTTTTC+CGG | - | chr7.4:1766783-1766802 | None:intergenic | 30.0% |
| !! | AAGAACCGATTCTTTTTGTT+AGG | + | chr7.4:1767994-1768013 | MS.gene22857:intron | 30.0% |
| !! | GCCTAATTTGTTATTGTGAT+TGG | + | chr7.4:1768111-1768130 | MS.gene22857:intron | 30.0% |
| !! | TCACCATTTGATTGACTTTT+TGG | - | chr7.4:1768538-1768557 | None:intergenic | 30.0% |
| !! | TTTGAGACTTTTAACCACAT+CGG | - | chr7.4:1769560-1769579 | None:intergenic | 30.0% |
| AAAGAATCCTTGGGAGATTT+GGG | + | chr7.4:1766628-1766647 | MS.gene22857:CDS | 35.0% | |
| AAATCCACCAAAAGAATTGC+AGG | - | chr7.4:1767578-1767597 | None:intergenic | 35.0% | |
| AAGAGTAACACTTTCCATGA+TGG | + | chr7.4:1766848-1766867 | MS.gene22857:CDS | 35.0% | |
| AATCCACCAAAAGAATTGCA+GGG | - | chr7.4:1767577-1767596 | None:intergenic | 35.0% | |
| AGTCGAATTTGGGTAAAATG+TGG | - | chr7.4:1768268-1768287 | None:intergenic | 35.0% | |
| AGTGGCAGATTTCTTCTTTA+AGG | - | chr7.4:1766708-1766727 | None:intergenic | 35.0% | |
| ATGCATTGTTATATACGTGG+GGG | - | chr7.4:1767691-1767710 | None:intergenic | 35.0% | |
| CTTGACACAGTAGAAATCAA+TGG | + | chr7.4:1768368-1768387 | MS.gene22857:intron | 35.0% | |
| GAAAAAAGAGATGAGCATGT+GGG | + | chr7.4:1768601-1768620 | MS.gene22857:CDS | 35.0% | |
| GAAGAAGACAAAGAAGAAGA+TGG | + | chr7.4:1769631-1769650 | MS.gene22857:intron | 35.0% | |
| GATAAATAAGTAGGTATCCG+GGG | + | chr7.4:1767653-1767672 | MS.gene22857:intron | 35.0% | |
| GGAGAACAATAATGTTTGGT+TGG | + | chr7.4:1769480-1769499 | MS.gene22857:intron | 35.0% | |
| GTCAAGAACAGTGATATAGT+TGG | - | chr7.4:1766588-1766607 | None:intergenic | 35.0% | |
| GTGTGTGTGTGTGATAATTA+GGG | + | chr7.4:1767474-1767493 | MS.gene22857:intron | 35.0% | |
| GTTCTTGACTACGAATTGTT+TGG | + | chr7.4:1766599-1766618 | MS.gene22857:CDS | 35.0% | |
| TAAACATGTGCACAATACCA+AGG | - | chr7.4:1767154-1767173 | None:intergenic | 35.0% | |
| TAAAGAATCCTTGGGAGATT+TGG | + | chr7.4:1766627-1766646 | MS.gene22857:CDS | 35.0% | |
| TCAAGAAATCAACTTGATGG+TGG | + | chr7.4:1769523-1769542 | MS.gene22857:CDS | 35.0% | |
| TCTATATCAATCCTTTCCTC+CGG | + | chr7.4:1768314-1768333 | MS.gene22857:intron | 35.0% | |
| TGTGTGTGTGTGTGATAATT+AGG | + | chr7.4:1767473-1767492 | MS.gene22857:intron | 35.0% | |
| TTTCCACAATATGAGTGAGA+AGG | - | chr7.4:1766665-1766684 | None:intergenic | 35.0% | |
| ! | AAACGCTTGATTCGTACTAT+TGG | + | chr7.4:1766731-1766750 | MS.gene22857:CDS | 35.0% |
| ! | TTGATTCGTACTATTGGAAG+TGG | + | chr7.4:1766737-1766756 | MS.gene22857:CDS | 35.0% |
| !!! | TCTCTTTTTTCCTTGCATTG+AGG | - | chr7.4:1768592-1768611 | None:intergenic | 35.0% |
| AATAGTGTGTACTTTGCCCA+AGG | + | chr7.4:1769115-1769134 | MS.gene22857:intron | 40.0% | |
| ACGAATCAAGCGTTTACTAG+TGG | - | chr7.4:1766726-1766745 | None:intergenic | 40.0% | |
| AGAAGAGGAACATTGAAAGG+TGG | - | chr7.4:1768415-1768434 | None:intergenic | 40.0% | |
| ATGAGCATAACTCAGTTAGC+AGG | - | chr7.4:1767717-1767736 | None:intergenic | 40.0% | |
| ATTGTTATATACGTGGGGGT+TGG | - | chr7.4:1767687-1767706 | None:intergenic | 40.0% | |
| CGGATAAGTTCATCATCAGT+AGG | - | chr7.4:1766527-1766546 | None:intergenic | 40.0% | |
| CTAACTGAGTTATGCTCATG+GGG | + | chr7.4:1767718-1767737 | MS.gene22857:intron | 40.0% | |
| GAACTGAGAGAGAAGAATGA+AGG | + | chr7.4:1769691-1769710 | MS.gene22857:CDS | 40.0% | |
| GAAGACAAAGAAGAAGATGG+TGG | + | chr7.4:1769634-1769653 | MS.gene22857:intron | 40.0% | |
| GCTAACTGAGTTATGCTCAT+GGG | + | chr7.4:1767717-1767736 | MS.gene22857:intron | 40.0% | |
| GGAAAAAAGAGATGAGCATG+TGG | + | chr7.4:1768600-1768619 | MS.gene22857:CDS | 40.0% | |
| TAATTCAGAGCCTCAATGCA+AGG | + | chr7.4:1768579-1768598 | MS.gene22857:CDS | 40.0% | |
| TACTATTGGAAGTGGTACGT+GGG | + | chr7.4:1766745-1766764 | MS.gene22857:CDS | 40.0% | |
| TCTGCACAGAACATAGTTCT+TGG | - | chr7.4:1767220-1767239 | None:intergenic | 40.0% | |
| TGAACACAAAAGGAGAAAGG+TGG | + | chr7.4:1768555-1768574 | MS.gene22857:CDS | 40.0% | |
| TGAGCATAACTCAGTTAGCA+GGG | - | chr7.4:1767716-1767735 | None:intergenic | 40.0% | |
| TGCTAACTGAGTTATGCTCA+TGG | + | chr7.4:1767716-1767735 | MS.gene22857:intron | 40.0% | |
| TGGAAATATCAAGACCGATG+TGG | + | chr7.4:1769543-1769562 | MS.gene22857:CDS | 40.0% | |
| TGGTGAACACAAAAGGAGAA+AGG | + | chr7.4:1768552-1768571 | MS.gene22857:CDS | 40.0% | |
| TTGTTATATACGTGGGGGTT+GGG | - | chr7.4:1767686-1767705 | None:intergenic | 40.0% | |
| AACTCTTCCCAAATCTCCCA+AGG | - | chr7.4:1766638-1766657 | None:intergenic | 45.0% | |
| AAGCTCAGGCCAAGACATAA+TGG | - | chr7.4:1769662-1769681 | None:intergenic | 45.0% | |
| AATGTTGAACGAGATGGGCA+AGG | + | chr7.4:1767315-1767334 | MS.gene22857:CDS | 45.0% | |
| ACAGTGATATAGTTGGGCAC+TGG | - | chr7.4:1766581-1766600 | None:intergenic | 45.0% | |
| ACATGCAGTGCTACGAACTT+AGG | - | chr7.4:1767115-1767134 | None:intergenic | 45.0% | |
| AGTTCCTGTGAGAAAAGCTC+AGG | - | chr7.4:1769676-1769695 | None:intergenic | 45.0% | |
| CAAACGAATACATGCTCGGA+TGG | - | chr7.4:1766986-1767005 | None:intergenic | 45.0% | |
| CCAAAAGAGACCATCCTTCT+AGG | + | chr7.4:1768634-1768653 | MS.gene22857:CDS | 45.0% | |
| GAGCAAAAGGATTGGGAAAC+CGG | - | chr7.4:1768336-1768355 | None:intergenic | 45.0% | |
| GCACCTTCTCACTCATATTG+TGG | + | chr7.4:1766659-1766678 | MS.gene22857:CDS | 45.0% | |
| GTACTATTGGAAGTGGTACG+TGG | + | chr7.4:1766744-1766763 | MS.gene22857:CDS | 45.0% | |
| TGTTATATACGTGGGGGTTG+GGG | - | chr7.4:1767685-1767704 | None:intergenic | 45.0% | |
| ! | ACACTTTCCATGATGGTGCA+TGG | + | chr7.4:1766855-1766874 | MS.gene22857:CDS | 45.0% |
| ! | CCTAGAAGGATGGTCTCTTT+TGG | - | chr7.4:1768637-1768656 | None:intergenic | 45.0% |
| !! | ACACTTTTGGTGGTAGCTTC+AGG | - | chr7.4:1768661-1768680 | None:intergenic | 45.0% |
| !! | ATGGTGGTGCCATTATGTCT+TGG | + | chr7.4:1769650-1769669 | MS.gene22857:intron | 45.0% |
| !!! | CTATAATTTTAATAAATTTA+CGG | - | chr7.4:1767762-1767781 | None:intergenic | 5.0% |
| !!! | TATAATTTTAATAAATTTAC+GGG | - | chr7.4:1767761-1767780 | None:intergenic | 5.0% |
| AAAAGAATTGCAGGGAGCCC+TGG | - | chr7.4:1767569-1767588 | None:intergenic | 50.0% | |
| AAAGAATTGCAGGGAGCCCT+GGG | - | chr7.4:1767568-1767587 | None:intergenic | 50.0% | |
| ACGAGATGGGCAAGGAAAGA+CGG | + | chr7.4:1767323-1767342 | MS.gene22857:CDS | 50.0% | |
| AGCTTCAGGTCCTAGAAGGA+TGG | - | chr7.4:1768647-1768666 | None:intergenic | 50.0% | |
| ATTGGAAGTGGTACGTGGGA+AGG | + | chr7.4:1766749-1766768 | MS.gene22857:CDS | 50.0% | |
| CAAAAGGATTGGGAAACCGG+AGG | - | chr7.4:1768333-1768352 | None:intergenic | 50.0% | |
| CAAGGAAAGACGGTTGTTCC+CGG | + | chr7.4:1767333-1767352 | MS.gene22857:CDS | 50.0% | |
| GCAAGATCCATGCACCATCA+TGG | - | chr7.4:1766865-1766884 | None:intergenic | 50.0% | |
| TGGTAGCTTCAGGTCCTAGA+AGG | - | chr7.4:1768651-1768670 | None:intergenic | 50.0% | |
| ! | AGGGCTCCCTGCAATTCTTT+TGG | + | chr7.4:1767568-1767587 | MS.gene22857:intron | 50.0% |
| ! | GCTCCCTGCAATTCTTTTGG+TGG | + | chr7.4:1767571-1767590 | MS.gene22857:intron | 50.0% |
| ! | TTGGCCTGAGCTTTTCTCAC+AGG | + | chr7.4:1769669-1769688 | MS.gene22857:intron | 50.0% |
| !! | TTTGTCGCTTTCCGCATGTC+CGG | - | chr7.4:1767355-1767374 | None:intergenic | 50.0% |
| ACGTGGGAAGGTGAAGACAC+CGG | + | chr7.4:1766761-1766780 | MS.gene22857:CDS | 55.0% | |
| GGATTGGGAAACCGGAGGAA+AGG | - | chr7.4:1768328-1768347 | None:intergenic | 55.0% | |
| GGGACGGGACAAATAAGACG+GGG | - | chr7.4:1767535-1767554 | None:intergenic | 55.0% | |
| GGGGACGGGACAAATAAGAC+GGG | - | chr7.4:1767536-1767555 | None:intergenic | 55.0% | |
| GGGGGACGGGACAAATAAGA+CGG | - | chr7.4:1767537-1767556 | None:intergenic | 55.0% | |
| !! | TTGTCGCTTTCCGCATGTCC+GGG | - | chr7.4:1767354-1767373 | None:intergenic | 55.0% |
| AATTGCAGGGAGCCCTGGGT+GGG | - | chr7.4:1767564-1767583 | None:intergenic | 60.0% | |
| GACGGTTGTTCCCGGACATG+CGG | + | chr7.4:1767341-1767360 | MS.gene22857:CDS | 60.0% | |
| ATTGCAGGGAGCCCTGGGTG+GGG | - | chr7.4:1767563-1767582 | None:intergenic | 65.0% | |
| GAATTGCAGGGAGCCCTGGG+TGG | - | chr7.4:1767565-1767584 | None:intergenic | 65.0% | |
| GGGGGTTGGGGTTCGAACCC+CGG | - | chr7.4:1767673-1767692 | None:intergenic | 70.0% | |
| TTGCAGGGAGCCCTGGGTGG+GGG | - | chr7.4:1767562-1767581 | None:intergenic | 70.0% | |
| TGCAGGGAGCCCTGGGTGGG+GGG | - | chr7.4:1767561-1767580 | None:intergenic | 75.0% | |
| ! | AGGGAGCCCTGGGTGGGGGG+TGG | - | chr7.4:1767558-1767577 | None:intergenic | 80.0% |
| ! | CCTGGGTGGGGGGTGGGGGA+CGG | - | chr7.4:1767551-1767570 | None:intergenic | 80.0% |
| ! | CGTCCCCCACCCCCCACCCA+GGG | + | chr7.4:1767549-1767568 | MS.gene22857:intron | 80.0% |
| ! | CTGGGTGGGGGGTGGGGGAC+GGG | - | chr7.4:1767550-1767569 | None:intergenic | 80.0% |
| ! | GAGCCCTGGGTGGGGGGTGG+GGG | - | chr7.4:1767555-1767574 | None:intergenic | 80.0% |
| ! | GGAGCCCTGGGTGGGGGGTG+GGG | - | chr7.4:1767556-1767575 | None:intergenic | 80.0% |
| ! | GGGAGCCCTGGGTGGGGGGT+GGG | - | chr7.4:1767557-1767576 | None:intergenic | 80.0% |
| ! | CCGTCCCCCACCCCCCACCC+AGG | + | chr7.4:1767548-1767567 | MS.gene22857:intron | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 1766488 | 1769825 | 1766488 | ID=MS.gene22857 |
| chr7.4 | mRNA | 1766488 | 1769825 | 1766488 | ID=MS.gene22857.t1;Parent=MS.gene22857 |
| chr7.4 | exon | 1766488 | 1766925 | 1766488 | ID=MS.gene22857.t1.exon1;Parent=MS.gene22857.t1 |
| chr7.4 | CDS | 1766488 | 1766925 | 1766488 | ID=cds.MS.gene22857.t1;Parent=MS.gene22857.t1 |
| chr7.4 | exon | 1767216 | 1767377 | 1767216 | ID=MS.gene22857.t1.exon2;Parent=MS.gene22857.t1 |
| chr7.4 | CDS | 1767216 | 1767377 | 1767216 | ID=cds.MS.gene22857.t1;Parent=MS.gene22857.t1 |
| chr7.4 | exon | 1768499 | 1768678 | 1768499 | ID=MS.gene22857.t1.exon3;Parent=MS.gene22857.t1 |
| chr7.4 | CDS | 1768499 | 1768678 | 1768499 | ID=cds.MS.gene22857.t1;Parent=MS.gene22857.t1 |
| chr7.4 | exon | 1769481 | 1769564 | 1769481 | ID=MS.gene22857.t1.exon4;Parent=MS.gene22857.t1 |
| chr7.4 | CDS | 1769481 | 1769564 | 1769481 | ID=cds.MS.gene22857.t1;Parent=MS.gene22857.t1 |
| chr7.4 | exon | 1769691 | 1769825 | 1769691 | ID=MS.gene22857.t1.exon5;Parent=MS.gene22857.t1 |
| chr7.4 | CDS | 1769691 | 1769825 | 1769691 | ID=cds.MS.gene22857.t1;Parent=MS.gene22857.t1 |
| Gene Sequence |
| Protein sequence |
