AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene23011

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene23011.t1 MTR_7g108150 95.699 372 16 0 1 372 1 372 0.0 737
MS.gene23011.t1 MTR_3g082630 50.000 100 50 0 20 119 5 104 1.51e-29 118
MS.gene23011.t1 MTR_3g082630 55.000 60 24 1 310 369 339 395 6.95e-12 66.6
MS.gene23011.t1 MTR_5g069480 48.515 101 51 1 20 119 5 105 6.34e-29 114
MS.gene23011.t1 MTR_7g083540 45.255 137 57 4 19 148 4 129 6.89e-29 115
MS.gene23011.t1 MTR_7g083540 46.914 81 42 1 290 369 302 382 9.11e-14 72.4
MS.gene23011.t1 MTR_5g069480 48.515 101 51 1 20 119 5 105 1.07e-28 115
MS.gene23011.t1 MTR_2g088900 45.000 100 54 1 20 119 101 199 5.90e-21 94.7
MS.gene23011.t1 MTR_1g109350 37.736 106 64 1 18 123 3 106 3.22e-20 90.9
MS.gene23011.t1 MTR_7g018170 36.283 113 64 3 18 126 24 132 1.58e-18 86.7
MS.gene23011.t1 MTR_1g013450 40.698 86 50 1 20 104 6 91 6.94e-18 84.0
MS.gene23011.t1 MTR_1g013450 36.893 103 54 3 267 369 205 296 1.95e-11 64.7
MS.gene23011.t1 MTR_3g105710 40.449 89 52 1 20 107 6 94 1.33e-17 82.8
MS.gene23011.t1 MTR_4g128930 40.449 89 52 1 20 107 22 110 1.46e-17 83.6
MS.gene23011.t1 MTR_4g128930 41.176 68 40 0 302 369 272 339 3.36e-11 64.3
MS.gene23011.t1 MTR_4g067320 43.478 92 42 2 20 101 5 96 1.10e-15 76.3
MS.gene23011.t1 MTR_4g067320 43.478 92 42 2 20 101 5 96 1.17e-15 76.3
MS.gene23011.t1 MTR_1g023260 35.354 99 53 2 20 107 5 103 8.67e-14 69.7
MS.gene23011.t1 MTR_1g023260 35.354 99 53 2 20 107 5 103 1.52e-13 70.5
MS.gene23011.t1 MTR_5g021580 38.750 80 41 1 20 91 5 84 3.03e-13 68.2
MS.gene23011.t1 MTR_5g021580 38.750 80 41 1 20 91 5 84 3.22e-13 67.8
MS.gene23011.t1 MTR_2g099010 39.796 98 49 2 20 107 5 102 4.38e-13 68.9
MS.gene23011.t1 MTR_2g099010 39.796 98 49 2 20 107 5 102 4.80e-13 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene23011.t1 AT2G47890 45.961 359 146 9 18 369 11 328 1.78e-93 283
MS.gene23011.t1 AT2G47890 42.042 333 145 9 18 343 11 302 1.83e-74 233
MS.gene23011.t1 AT2G47890 51.185 211 79 3 18 227 11 198 5.36e-70 219
MS.gene23011.t1 AT3G07650 30.504 377 210 13 20 369 5 356 3.87e-37 138
MS.gene23011.t1 AT3G07650 30.504 377 210 13 20 369 5 356 3.87e-37 138
MS.gene23011.t1 AT3G07650 30.504 377 210 13 20 369 5 356 3.87e-37 138
MS.gene23011.t1 AT3G07650 30.504 377 210 13 20 369 5 356 3.87e-37 138
MS.gene23011.t1 AT1G28050 35.897 195 103 6 19 209 8 184 6.24e-34 130
MS.gene23011.t1 AT1G28050 50.725 69 33 1 302 369 358 426 4.74e-13 70.5
MS.gene23011.t1 AT2G33500 51.351 111 53 1 19 128 11 121 1.60e-33 129
MS.gene23011.t1 AT2G33500 39.831 118 63 2 258 369 283 398 1.99e-15 77.4
MS.gene23011.t1 AT2G33500 51.351 111 53 1 19 128 11 121 1.61e-33 129
MS.gene23011.t1 AT2G33500 41.525 118 60 3 258 369 283 397 1.19e-15 78.2
MS.gene23011.t1 AT3G21880 31.165 369 210 13 20 369 5 348 7.92e-33 126
MS.gene23011.t1 AT3G21880 31.165 369 210 13 20 369 9 352 7.99e-33 126
MS.gene23011.t1 AT3G21880 31.165 369 210 13 20 369 9 352 7.99e-33 126
MS.gene23011.t1 AT3G02380 28.455 369 198 9 11 369 7 319 1.51e-31 122
MS.gene23011.t1 AT5G48250 46.226 106 54 1 20 122 5 110 8.40e-29 115
MS.gene23011.t1 AT4G15250 42.000 100 57 1 20 119 5 103 2.07e-20 91.3
MS.gene23011.t1 AT1G68190 38.679 106 64 1 18 123 12 116 2.35e-20 91.7
MS.gene23011.t1 AT1G68190 38.679 106 64 1 18 123 12 116 2.35e-20 91.7
MS.gene23011.t1 AT1G68190 38.679 106 64 1 18 123 41 145 2.51e-20 91.7
MS.gene23011.t1 AT5G15840 43.011 93 52 1 18 109 18 110 8.58e-20 90.1
MS.gene23011.t1 AT5G15840 43.011 93 52 1 18 109 18 110 1.60e-19 87.8
MS.gene23011.t1 AT5G24930 40.449 89 52 1 20 107 6 94 3.72e-18 85.1
MS.gene23011.t1 AT5G15850 42.045 88 50 1 18 104 10 97 4.11e-18 85.1
MS.gene23011.t1 AT5G15850 35.075 134 66 5 252 369 199 327 2.42e-11 64.7
MS.gene23011.t1 AT2G24790 39.560 91 54 1 18 107 6 96 5.21e-18 84.0
MS.gene23011.t1 AT2G24790 39.560 91 54 1 18 107 6 96 6.53e-18 82.0
MS.gene23011.t1 AT5G57660 39.560 91 50 2 18 107 20 106 1.44e-17 83.6
MS.gene23011.t1 AT4G38960 40.000 80 40 1 20 91 5 84 6.79e-13 67.0
MS.gene23011.t1 AT4G38960 40.000 80 40 1 20 91 5 84 6.79e-13 67.0
MS.gene23011.t1 AT2G21320 38.750 80 41 1 20 91 5 84 2.90e-12 65.1
MS.gene23011.t1 AT1G75540 35.000 100 52 2 20 106 5 104 3.46e-12 67.4
MS.gene23011.t1 AT2G31380 36.170 94 51 1 20 104 5 98 1.26e-11 64.3
MS.gene23011.t1 AT1G06040 35.106 94 52 1 20 104 5 98 8.70e-11 62.0
MS.gene23011.t1 AT1G06040 35.714 98 53 2 20 107 5 102 9.86e-11 60.8

Find 91 sgRNAs with CRISPR-Local

Find 165 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGTTAGGGTTAGGGTTTCT+AGG 0.248419 7.2:-6777724 None:intergenic
TTGTATGAAGGGTTAGGGTT+AGG 0.288505 7.2:-6777733 None:intergenic
ATCGCATGAATCACAGATTA+AGG 0.318847 7.2:-6777890 None:intergenic
ATTCTGGGTTTGCAGGATAT+TGG 0.319782 7.2:+6778066 MS.gene23011:CDS
GCCGATGGTATATATTCTTC+AGG 0.321813 7.2:-6778796 None:intergenic
TATGGAGAAGGAACGGCTTT+AGG 0.323731 7.2:-6779434 None:intergenic
TATATATTCTTCAGGATCAT+AGG 0.324011 7.2:-6778788 None:intergenic
GACTGTCTGATATGTTTGTT+TGG 0.326886 7.2:+6778154 MS.gene23011:CDS
AATAGTTTGTATGAAGGGTT+AGG 0.336188 7.2:-6777739 None:intergenic
ACAGATATGACAAGCATATA+AGG 0.340161 7.2:+6780005 MS.gene23011:intron
TCTTGACTTGCTAACTCATA+TGG 0.342545 7.2:-6779452 None:intergenic
TGTATGAAGGGTTAGGGTTA+GGG 0.354476 7.2:-6777732 None:intergenic
AGTGTAGGAGATGGGTTTGT+TGG 0.360731 7.2:+6778117 MS.gene23011:CDS
ATGATTTCAGTGCTCTATCT+TGG 0.379435 7.2:-6780083 None:intergenic
AAACATTCTGTATCTTCTGC+TGG 0.403504 7.2:+6779299 MS.gene23011:CDS
CTTAGAGAAGAGTTGATTTG+TGG 0.405751 7.2:-6777857 None:intergenic
TTTGTCGATTCTGGGTTTGC+AGG 0.409347 7.2:+6778059 MS.gene23011:CDS
GGAGAGCAGGACTAGAGTTA+AGG 0.409856 7.2:+6780051 MS.gene23011:CDS
GTGTAGGAGATGGGTTTGTT+GGG 0.419510 7.2:+6778118 MS.gene23011:CDS
AAAGGGATTCTGCATTATTA+CGG 0.421974 7.2:+6779474 MS.gene23011:CDS
TTCTCATTATTATCGTGCTA+TGG 0.428856 7.2:+6778227 MS.gene23011:CDS
CCATCGGCAAATTTATCTAC+AGG 0.433066 7.2:+6778811 MS.gene23011:CDS
GCGTCCCTCCGTTGTTACAC+TGG 0.441856 7.2:-6779334 None:intergenic
GTATGAATCACGTAAAGTTC+GGG 0.445996 7.2:+6780027 MS.gene23011:CDS
GGTATGAATCACGTAAAGTT+CGG 0.449433 7.2:+6780026 MS.gene23011:CDS
AACATTCTGTATCTTCTGCT+GGG 0.457746 7.2:+6779300 MS.gene23011:CDS
ACTGTCTGATATGTTTGTTT+GGG 0.461387 7.2:+6778155 MS.gene23011:CDS
AGTGCTCTATCTTGGCAAAT+CGG 0.463266 7.2:-6780075 None:intergenic
AGAAGCATTACCTCATTTGA+AGG 0.463647 7.2:-6778865 None:intergenic
GAGAGCAGGACTAGAGTTAA+GGG 0.465308 7.2:+6780052 MS.gene23011:CDS
GGTCGAAATAGTTTGTATGA+AGG 0.466692 7.2:-6777745 None:intergenic
GCACGATAATAATGAGAAGA+AGG 0.470749 7.2:-6778222 None:intergenic
CCGTTGTTACACTGGGTATG+AGG 0.476347 7.2:-6779326 None:intergenic
ATGTTTAAGTGAAATTTCTT+CGG 0.479598 7.2:-6779282 None:intergenic
GTCACAAGAGAAACAGAGTT+TGG 0.482714 7.2:-6777821 None:intergenic
CATGAACGAAGGCCTCTTGA+GGG 0.483331 7.2:+6778006 MS.gene23011:CDS
GTCGAAATAGTTTGTATGAA+GGG 0.495953 7.2:-6777744 None:intergenic
GCTTTGAATGATGTATCAAC+AGG 0.496442 7.2:-6779254 None:intergenic
ATGAGTTAGCAAGTCAAGAA+AGG 0.496861 7.2:+6779456 MS.gene23011:CDS
ATAGTTTGTATGAAGGGTTA+GGG 0.500743 7.2:-6777738 None:intergenic
GTAAAGTTCGGGCGGAGAGC+AGG 0.504523 7.2:+6780038 MS.gene23011:CDS
CACGATAATAATGAGAAGAA+GGG 0.510393 7.2:-6778221 None:intergenic
GTCTACCACAAGCAGCCTTA+CGG 0.520053 7.2:-6778717 None:intergenic
CTCAGGAAAGTGTAGGAGAT+GGG 0.521940 7.2:+6778109 MS.gene23011:CDS
TCGTCAAGACTAACAAAAGA+AGG 0.524243 7.2:-6778183 None:intergenic
TGAGTTAGCAAGTCAAGAAA+GGG 0.532628 7.2:+6779457 MS.gene23011:CDS
TTTGTTGGGTATGAGATTGA+AGG 0.533817 7.2:+6778132 MS.gene23011:CDS
ATATATTCTTCAGGATCATA+GGG 0.544212 7.2:-6778787 None:intergenic
CGTCCCTCCGTTGTTACACT+GGG 0.546187 7.2:-6779333 None:intergenic
TCATGAACGAAGGCCTCTTG+AGG 0.546653 7.2:+6778005 MS.gene23011:CDS
CCTCAGGAAAGTGTAGGAGA+TGG 0.550053 7.2:+6778108 MS.gene23011:CDS
ATCAATTATACCTTGGGCAA+AGG 0.552662 7.2:-6778258 None:intergenic
TGATATTGTTCCTTCAAATG+AGG 0.553141 7.2:+6778855 MS.gene23011:CDS
GGAGGTTCCTCCTTTGCCCA+AGG 0.554443 7.2:+6778248 MS.gene23011:CDS
TTTCGACCTTGTGATTATTG+TGG 0.554518 7.2:+6777760 MS.gene23011:CDS
GTAGAACAGAGTATAGTAGC+AGG 0.559506 7.2:-6777919 None:intergenic
CTCTTAAACAACACCATGGG+TGG 0.565319 7.2:+6777697 None:intergenic
ACAGGAACAACTTGATGCAT+AGG 0.575038 7.2:-6779236 None:intergenic
GACAAAAGCTCAGTAACTGA+AGG 0.575937 7.2:-6778042 None:intergenic
AATTATACCTTGGGCAAAGG+AGG 0.579881 7.2:-6778255 None:intergenic
GATTTGTGGAGTGAACTTCA+CGG 0.583624 7.2:-6777843 None:intergenic
GTTATTGAAACAGAACCGTA+AGG 0.587659 7.2:+6778702 MS.gene23011:intron
GCGTCCCTCCGTTGTTACAG+TGG 0.590695 7.2:-6779373 None:intergenic
TCATTATTATCGTGCTATGG+AGG 0.593451 7.2:+6778230 MS.gene23011:CDS
TCTCTCAACCACTGTAACAA+CGG 0.600835 7.2:+6779365 MS.gene23011:CDS
CTTGCTAACTCATATGGAGA+AGG 0.601483 7.2:-6779446 None:intergenic
CATGAGGTGAAGATAGTGAA+AGG 0.604807 7.2:-6777987 None:intergenic
TCCTGAAGAATATATACCAT+CGG 0.605563 7.2:+6778795 MS.gene23011:CDS
TCAACCACTGTAACAACGGA+GGG 0.607091 7.2:+6779369 MS.gene23011:CDS
AGCAAAAGAAGAAAACAAGA+AGG 0.608996 7.2:+6779501 MS.gene23011:CDS
CCTGTAGATAAATTTGCCGA+TGG 0.612681 7.2:-6778811 None:intergenic
TCAAGAGGCCTTCGTTCATG+AGG 0.621272 7.2:-6778003 None:intergenic
TTTCTGTCAAAACTGTGACT+GGG 0.626975 7.2:+6777954 MS.gene23011:CDS
ACGATAATAATGAGAAGAAG+GGG 0.627018 7.2:-6778220 None:intergenic
ACATTCTGTATCTTCTGCTG+GGG 0.636591 7.2:+6779301 MS.gene23011:CDS
ATACCCAGTGTAACAACGGA+GGG 0.637441 7.2:+6779330 MS.gene23011:CDS
CAGAACCGTAAGGCTGCTTG+TGG 0.639150 7.2:+6778712 MS.gene23011:intron
GGCTTTAGGAGTAGTTGACA+AGG 0.642101 7.2:-6779420 None:intergenic
CACCCTGTAAAACCCTCAAG+AGG 0.645981 7.2:-6778018 None:intergenic
ACAAAAGCTCAGTAACTGAA+GGG 0.647464 7.2:-6778041 None:intergenic
TCAGACTTGAGATACTCTGA+AGG 0.649177 7.2:-6779395 None:intergenic
CTCAACCACTGTAACAACGG+AGG 0.655253 7.2:+6779368 MS.gene23011:CDS
TAACTCATATGGAGAAGGAA+CGG 0.655311 7.2:-6779441 None:intergenic
CCTCATACCCAGTGTAACAA+CGG 0.666009 7.2:+6779326 MS.gene23011:CDS
CAGTGGTTGAGAGATTCTGA+AGG 0.668190 7.2:-6779356 None:intergenic
GAATTGCCACAATAATCACA+AGG 0.683272 7.2:-6777766 None:intergenic
TGAATCACGTAAAGTTCGGG+CGG 0.683457 7.2:+6780030 MS.gene23011:CDS
CCATCTCCTACACTTTCCTG+AGG 0.685251 7.2:-6778108 None:intergenic
TATCTTCACCTCATGAACGA+AGG 0.697940 7.2:+6777995 MS.gene23011:CDS
CATACCCAGTGTAACAACGG+AGG 0.713642 7.2:+6779329 MS.gene23011:CDS
GTTTCTAGGAGAACCACCCA+TGG 0.721828 7.2:-6777710 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GATTTTTTTTTTTTTGTTTT+TGG + chr7.2:6778453-6778472 MS.gene23011:intron 10.0%
!! CTCAAATAAAATATATCAAA+AGG - chr7.2:6779709-6779728 None:intergenic 15.0%
!!! TTTTTTTTGTTTTTGGATTT+TGG + chr7.2:6778460-6778479 MS.gene23011:intron 15.0%
!! AAACATTAAAAGGTTGAAAA+TGG - chr7.2:6778958-6778977 None:intergenic 20.0%
!! AATTTAAAAACAGAGAAAGA+AGG - chr7.2:6778297-6778316 None:intergenic 20.0%
!! ACACACAAATAAACATTAAA+AGG - chr7.2:6778968-6778987 None:intergenic 20.0%
!! ATGTTTAAGTGAAATTTCTT+CGG - chr7.2:6779285-6779304 None:intergenic 20.0%
!!! ATTTTATTTGAGAGATATCA+AGG + chr7.2:6779717-6779736 MS.gene23011:intron 20.0%
!!! TCTTTCTCTGTTTTTAAATT+AGG + chr7.2:6778297-6778316 MS.gene23011:intron 20.0%
!!! TGTTTTTCATGTAAATACAT+GGG - chr7.2:6779985-6780004 None:intergenic 20.0%
!!! TTGTTTTTCATGTAAATACA+TGG - chr7.2:6779986-6780005 None:intergenic 20.0%
!!! TTTTAATTCTCTGATTCTTA+GGG + chr7.2:6778538-6778557 MS.gene23011:intron 20.0%
! AAAACAAGAAATCCATTATC+AGG - chr7.2:6778931-6778950 None:intergenic 25.0%
! AAAAGAGGGAAAAATAAACA+AGG - chr7.2:6779049-6779068 None:intergenic 25.0%
! AAATTGAAGAAGTTCAATGT+AGG + chr7.2:6779779-6779798 MS.gene23011:intron 25.0%
! ATATATTCTTCAGGATCATA+GGG - chr7.2:6778790-6778809 None:intergenic 25.0%
! ATATTCAATGTCTTGAAGTA+TGG - chr7.2:6779555-6779574 None:intergenic 25.0%
! ATTATCCATCAATTATACCT+TGG - chr7.2:6778268-6778287 None:intergenic 25.0%
! TAGTAATGTTATCATTTCAG+TGG + chr7.2:6779195-6779214 MS.gene23011:intron 25.0%
! TATATATTCTTCAGGATCAT+AGG - chr7.2:6778791-6778810 None:intergenic 25.0%
! TTATCCATCAATTATACCTT+GGG - chr7.2:6778267-6778286 None:intergenic 25.0%
! TTTAATTCTCTGATTCTTAG+GGG + chr7.2:6778539-6778558 MS.gene23011:intron 25.0%
!! GAAATTCATTCTGTCTTTTT+AGG + chr7.2:6778325-6778344 MS.gene23011:intron 25.0%
!! GTTTTTCATGTAAATACATG+GGG - chr7.2:6779984-6780003 None:intergenic 25.0%
!! TCTTTGCAATTTTCAAATGA+TGG + chr7.2:6779884-6779903 MS.gene23011:intron 25.0%
!!! GTGAAAACATGATTAGTTTT+TGG + chr7.2:6778431-6778450 MS.gene23011:intron 25.0%
!!! GTTTTAATTCTCTGATTCTT+AGG + chr7.2:6778537-6778556 MS.gene23011:intron 25.0%
!!! TGGTTAAAAGGGTTTTTTTT+GGG - chr7.2:6778618-6778637 None:intergenic 25.0%
AAAGGGATTCTGCATTATTA+CGG + chr7.2:6779474-6779493 MS.gene23011:CDS 30.0%
AAATTAGAATAACAACCACC+TGG - chr7.2:6779136-6779155 None:intergenic 30.0%
ACAGATATGACAAGCATATA+AGG + chr7.2:6780005-6780024 MS.gene23011:intron 30.0%
ACGATAATAATGAGAAGAAG+GGG - chr7.2:6778223-6778242 None:intergenic 30.0%
ACTGTCTGATATGTTTGTTT+GGG + chr7.2:6778155-6778174 MS.gene23011:CDS 30.0%
AGCAAAAGAAGAAAACAAGA+AGG + chr7.2:6779501-6779520 MS.gene23011:CDS 30.0%
ATAGGAGCAATCAAAAAAGA+GGG - chr7.2:6779063-6779082 None:intergenic 30.0%
CACGATAATAATGAGAAGAA+GGG - chr7.2:6778224-6778243 None:intergenic 30.0%
GAAACAAACCCTAAGTAATT+TGG + chr7.2:6778561-6778580 MS.gene23011:intron 30.0%
TCAGATCTTGATCATAAACA+AGG + chr7.2:6778379-6778398 MS.gene23011:intron 30.0%
TCCTGAAGAATATATACCAT+CGG + chr7.2:6778795-6778814 MS.gene23011:CDS 30.0%
TGATATTGTTCCTTCAAATG+AGG + chr7.2:6778855-6778874 MS.gene23011:CDS 30.0%
TTACCAAAAAGAGTGAAGAT+AGG - chr7.2:6779081-6779100 None:intergenic 30.0%
TTCAACTCAAGTGGTTAAAA+GGG - chr7.2:6778629-6778648 None:intergenic 30.0%
TTCTCATTATTATCGTGCTA+TGG + chr7.2:6778227-6778246 MS.gene23011:CDS 30.0%
! AATAGTTTGTATGAAGGGTT+AGG - chr7.2:6777742-6777761 None:intergenic 30.0%
! ATAGTTTGTATGAAGGGTTA+GGG - chr7.2:6777741-6777760 None:intergenic 30.0%
! GTCGAAATAGTTTGTATGAA+GGG - chr7.2:6777747-6777766 None:intergenic 30.0%
! TGATCACTGGATATTTTCAT+TGG + chr7.2:6779678-6779697 MS.gene23011:intron 30.0%
! TGCAATTTTCAAATGATGGT+TGG + chr7.2:6779888-6779907 MS.gene23011:intron 30.0%
! TTCAATTTGTTCAACTCAAG+TGG - chr7.2:6778638-6778657 None:intergenic 30.0%
! TTTTTGGATTTTGGACTGTT+TGG + chr7.2:6778469-6778488 MS.gene23011:intron 30.0%
!!! GGTTAAAAGGGTTTTTTTTG+GGG - chr7.2:6778617-6778636 None:intergenic 30.0%
!!! GTGGTTAAAAGGGTTTTTTT+TGG - chr7.2:6778619-6778638 None:intergenic 30.0%
AAACATTCTGTATCTTCTGC+TGG + chr7.2:6779299-6779318 MS.gene23011:CDS 35.0%
AACATTCTGTATCTTCTGCT+GGG + chr7.2:6779300-6779319 MS.gene23011:CDS 35.0%
AAGTAATATGGCTTGATCAC+TGG + chr7.2:6779665-6779684 MS.gene23011:intron 35.0%
ACAAAAGCTCAGTAACTGAA+GGG - chr7.2:6778044-6778063 None:intergenic 35.0%
AGAATCAGAGATGCAAAACA+AGG - chr7.2:6779012-6779031 None:intergenic 35.0%
AGTGATCAAGCCATATTACT+TGG - chr7.2:6779666-6779685 None:intergenic 35.0%
ATCAATTATACCTTGGGCAA+AGG - chr7.2:6778261-6778280 None:intergenic 35.0%
ATCGCATGAATCACAGATTA+AGG - chr7.2:6777893-6777912 None:intergenic 35.0%
ATGAGTTAGCAAGTCAAGAA+AGG + chr7.2:6779456-6779475 MS.gene23011:CDS 35.0%
ATGATGACTCCCAAGTAATA+TGG + chr7.2:6779653-6779672 MS.gene23011:intron 35.0%
CAATTCACAGTAAATGGAAC+AGG - chr7.2:6779834-6779853 None:intergenic 35.0%
GAAATCCATTATCAGGAATG+AGG - chr7.2:6778924-6778943 None:intergenic 35.0%
GAACCACAATTCACAGTAAA+TGG - chr7.2:6779840-6779859 None:intergenic 35.0%
GAATTGCCACAATAATCACA+AGG - chr7.2:6777769-6777788 None:intergenic 35.0%
GACTGTCTGATATGTTTGTT+TGG + chr7.2:6778154-6778173 MS.gene23011:CDS 35.0%
GATAGGAGCAATCAAAAAAG+AGG - chr7.2:6779064-6779083 None:intergenic 35.0%
GATCATAAACAAGGCATGAT+GGG + chr7.2:6778388-6778407 MS.gene23011:intron 35.0%
GCACGATAATAATGAGAAGA+AGG - chr7.2:6778225-6778244 None:intergenic 35.0%
GGTATGAATCACGTAAAGTT+CGG + chr7.2:6780026-6780045 MS.gene23011:CDS 35.0%
GTATGAATCACGTAAAGTTC+GGG + chr7.2:6780027-6780046 MS.gene23011:CDS 35.0%
GTGATCAAGCCATATTACTT+GGG - chr7.2:6779665-6779684 None:intergenic 35.0%
GTTATTGAAACAGAACCGTA+AGG + chr7.2:6778702-6778721 MS.gene23011:intron 35.0%
GTTCAACTCAAGTGGTTAAA+AGG - chr7.2:6778630-6778649 None:intergenic 35.0%
GTTCCATTTACTGTGAATTG+TGG + chr7.2:6779834-6779853 MS.gene23011:intron 35.0%
TAACTCATATGGAGAAGGAA+CGG - chr7.2:6779444-6779463 None:intergenic 35.0%
TCATTATTATCGTGCTATGG+AGG + chr7.2:6778230-6778249 MS.gene23011:CDS 35.0%
TCGTCAAGACTAACAAAAGA+AGG - chr7.2:6778186-6778205 None:intergenic 35.0%
TGAAGTATGGAGTTCAGATA+TGG - chr7.2:6779542-6779561 None:intergenic 35.0%
TGAGTTAGCAAGTCAAGAAA+GGG + chr7.2:6779457-6779476 MS.gene23011:CDS 35.0%
TGATCATAAACAAGGCATGA+TGG + chr7.2:6778387-6778406 MS.gene23011:intron 35.0%
TTTCATGTAAATACATGGGG+TGG - chr7.2:6779981-6780000 None:intergenic 35.0%
TTTCGACCTTGTGATTATTG+TGG + chr7.2:6777760-6777779 MS.gene23011:CDS 35.0%
TTTCTGTCAAAACTGTGACT+GGG + chr7.2:6777954-6777973 MS.gene23011:CDS 35.0%
TTTGCCCAAGGTATAATTGA+TGG + chr7.2:6778260-6778279 MS.gene23011:intron 35.0%
TTTGTTGGGTATGAGATTGA+AGG + chr7.2:6778132-6778151 MS.gene23011:CDS 35.0%
! ACCCTAAGTAATTTGGAGTT+CGG + chr7.2:6778568-6778587 MS.gene23011:intron 35.0%
! GAAGAAAACAAGAAGGTATG+TGG + chr7.2:6779508-6779527 MS.gene23011:intron 35.0%
! GATGGGATTAGTGCTAAATT+AGG + chr7.2:6778405-6778424 MS.gene23011:intron 35.0%
! GCTTTGAATGATGTATCAAC+AGG - chr7.2:6779257-6779276 None:intergenic 35.0%
! GGTCGAAATAGTTTGTATGA+AGG - chr7.2:6777748-6777767 None:intergenic 35.0%
! GTATTGATATAAGATGAGCC+AGG + chr7.2:6779115-6779134 MS.gene23011:intron 35.0%
! TGTGGTTCTGTAATTGATCA+TGG + chr7.2:6779852-6779871 MS.gene23011:intron 35.0%
! TTTTCTGTCAAAACTGTGAC+TGG + chr7.2:6777953-6777972 MS.gene23011:CDS 35.0%
!! AAAATCATTGCTTTTGCCTC+AGG + chr7.2:6778092-6778111 MS.gene23011:CDS 35.0%
!! ACAGTTTTGACAGAAAACAG+AGG - chr7.2:6777950-6777969 None:intergenic 35.0%
!! AGAAGCATTACCTCATTTGA+AGG - chr7.2:6778868-6778887 None:intergenic 35.0%
!! CTTAGAGAAGAGTTGATTTG+TGG - chr7.2:6777860-6777879 None:intergenic 35.0%
!! GCTGCAATTTTAACATGTTC+TGG + chr7.2:6778672-6778691 MS.gene23011:intron 35.0%
!! TCTTGACTTGCTAACTCATA+TGG - chr7.2:6779455-6779474 None:intergenic 35.0%
!! TTTGGTAAACGAACTTGCTA+TGG + chr7.2:6779093-6779112 MS.gene23011:intron 35.0%
!!! AGGTTTTGATTGCGATGTAA+AGG + chr7.2:6778831-6778850 MS.gene23011:CDS 35.0%
!!! GTTTTTTTTGGGGTGGTTAA+AGG - chr7.2:6778607-6778626 None:intergenic 35.0%
!!! TAAAAGGGTTTTTTTTGGGG+TGG - chr7.2:6778614-6778633 None:intergenic 35.0%
AATTATACCTTGGGCAAAGG+AGG - chr7.2:6778258-6778277 None:intergenic 40.0%
ACAGGAACAACTTGATGCAT+AGG - chr7.2:6779239-6779258 None:intergenic 40.0%
ACATTCTGTATCTTCTGCTG+GGG + chr7.2:6779301-6779320 MS.gene23011:CDS 40.0%
AGCCGAACTCCAAATTACTT+AGG - chr7.2:6778573-6778592 None:intergenic 40.0%
AGTGCTCTATCTTGGCAAAT+CGG - chr7.2:6780078-6780097 None:intergenic 40.0%
ATTCTGGGTTTGCAGGATAT+TGG + chr7.2:6778066-6778085 MS.gene23011:CDS 40.0%
CATGAGGTGAAGATAGTGAA+AGG - chr7.2:6777990-6778009 None:intergenic 40.0%
CCATCGGCAAATTTATCTAC+AGG + chr7.2:6778811-6778830 MS.gene23011:CDS 40.0%
CCTGTAGATAAATTTGCCGA+TGG - chr7.2:6778814-6778833 None:intergenic 40.0%
CTTGCTAACTCATATGGAGA+AGG - chr7.2:6779449-6779468 None:intergenic 40.0%
GACAAAAGCTCAGTAACTGA+AGG - chr7.2:6778045-6778064 None:intergenic 40.0%
GATTTGTGGAGTGAACTTCA+CGG - chr7.2:6777846-6777865 None:intergenic 40.0%
GCCGAACTCCAAATTACTTA+GGG - chr7.2:6778572-6778591 None:intergenic 40.0%
GCCGATGGTATATATTCTTC+AGG - chr7.2:6778799-6778818 None:intergenic 40.0%
GGATTGTTGATCAATGAGCT+AGG + chr7.2:6779909-6779928 MS.gene23011:intron 40.0%
GTAGAACAGAGTATAGTAGC+AGG - chr7.2:6777922-6777941 None:intergenic 40.0%
GTCACAAGAGAAACAGAGTT+TGG - chr7.2:6777824-6777843 None:intergenic 40.0%
TATCTTCACCTCATGAACGA+AGG + chr7.2:6777995-6778014 MS.gene23011:CDS 40.0%
TCAGACTTGAGATACTCTGA+AGG - chr7.2:6779398-6779417 None:intergenic 40.0%
TCGATCCTCATTCCTGATAA+TGG + chr7.2:6778916-6778935 MS.gene23011:intron 40.0%
TCTCTCAACCACTGTAACAA+CGG + chr7.2:6779365-6779384 MS.gene23011:CDS 40.0%
TGTATGAAGGGTTAGGGTTA+GGG - chr7.2:6777735-6777754 None:intergenic 40.0%
TTGATATAAGATGAGCCAGG+TGG + chr7.2:6779118-6779137 MS.gene23011:intron 40.0%
TTGTATGAAGGGTTAGGGTT+AGG - chr7.2:6777736-6777755 None:intergenic 40.0%
! GCTCCTATCTTCACTCTTTT+TGG + chr7.2:6779075-6779094 MS.gene23011:intron 40.0%
!!! ACTGAGCTTTTGTCGATTCT+GGG + chr7.2:6778051-6778070 MS.gene23011:CDS 40.0%
!!! TACTGAGCTTTTGTCGATTC+TGG + chr7.2:6778050-6778069 MS.gene23011:CDS 40.0%
ATACCCAGTGTAACAACGGA+GGG + chr7.2:6779330-6779349 MS.gene23011:CDS 45.0%
CAGTGGTTGAGAGATTCTGA+AGG - chr7.2:6779359-6779378 None:intergenic 45.0%
CCTCATACCCAGTGTAACAA+CGG + chr7.2:6779326-6779345 MS.gene23011:CDS 45.0%
GAGAGCAGGACTAGAGTTAA+GGG + chr7.2:6780052-6780071 MS.gene23011:CDS 45.0%
TATGGAGAAGGAACGGCTTT+AGG - chr7.2:6779437-6779456 None:intergenic 45.0%
TCAACCACTGTAACAACGGA+GGG + chr7.2:6779369-6779388 MS.gene23011:CDS 45.0%
TGAATCACGTAAAGTTCGGG+CGG + chr7.2:6780030-6780049 MS.gene23011:CDS 45.0%
! AGTGTAGGAGATGGGTTTGT+TGG + chr7.2:6778117-6778136 MS.gene23011:CDS 45.0%
! CTCAGGAAAGTGTAGGAGAT+GGG + chr7.2:6778109-6778128 MS.gene23011:CDS 45.0%
! GTGTAGGAGATGGGTTTGTT+GGG + chr7.2:6778118-6778137 MS.gene23011:CDS 45.0%
!! CTTTTGCCTCAGGAAAGTGT+AGG + chr7.2:6778102-6778121 MS.gene23011:CDS 45.0%
!! GGCTTTAGGAGTAGTTGACA+AGG - chr7.2:6779423-6779442 None:intergenic 45.0%
!! TTTGTCGATTCTGGGTTTGC+AGG + chr7.2:6778059-6778078 MS.gene23011:CDS 45.0%
CACCCTGTAAAACCCTCAAG+AGG - chr7.2:6778021-6778040 None:intergenic 50.0%
CATACCCAGTGTAACAACGG+AGG + chr7.2:6779329-6779348 MS.gene23011:CDS 50.0%
CATGAACGAAGGCCTCTTGA+GGG + chr7.2:6778006-6778025 MS.gene23011:CDS 50.0%
CCATCTCCTACACTTTCCTG+AGG - chr7.2:6778111-6778130 None:intergenic 50.0%
CCGTTGTTACACTGGGTATG+AGG - chr7.2:6779329-6779348 None:intergenic 50.0%
CTCAACCACTGTAACAACGG+AGG + chr7.2:6779368-6779387 MS.gene23011:CDS 50.0%
GGAGAGCAGGACTAGAGTTA+AGG + chr7.2:6780051-6780070 MS.gene23011:CDS 50.0%
GGGTTAGGGTTAGGGTTTCT+AGG - chr7.2:6777727-6777746 None:intergenic 50.0%
GTCTACCACAAGCAGCCTTA+CGG - chr7.2:6778720-6778739 None:intergenic 50.0%
TCAAGAGGCCTTCGTTCATG+AGG - chr7.2:6778006-6778025 None:intergenic 50.0%
TCATGAACGAAGGCCTCTTG+AGG + chr7.2:6778005-6778024 MS.gene23011:CDS 50.0%
! AGGCCTCTTGAGGGTTTTAC+AGG + chr7.2:6778015-6778034 MS.gene23011:CDS 50.0%
! CCTCAGGAAAGTGTAGGAGA+TGG + chr7.2:6778108-6778127 MS.gene23011:CDS 50.0%
! GGCCTCTTGAGGGTTTTACA+GGG + chr7.2:6778016-6778035 MS.gene23011:CDS 50.0%
CAGAACCGTAAGGCTGCTTG+TGG + chr7.2:6778712-6778731 MS.gene23011:intron 55.0%
CGTCCCTCCGTTGTTACACT+GGG - chr7.2:6779336-6779355 None:intergenic 55.0%
GCGTCCCTCCGTTGTTACAC+TGG - chr7.2:6779337-6779356 None:intergenic 60.0%
GCGTCCCTCCGTTGTTACAG+TGG - chr7.2:6779376-6779395 None:intergenic 60.0%
GGAGGTTCCTCCTTTGCCCA+AGG + chr7.2:6778248-6778267 MS.gene23011:CDS 60.0%
GTAAAGTTCGGGCGGAGAGC+AGG + chr7.2:6780038-6780057 MS.gene23011:CDS 60.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 6777712 6780099 6777712 ID=MS.gene23011
chr7.2 mRNA 6777712 6780099 6777712 ID=MS.gene23011.t1;Parent=MS.gene23011
chr7.2 exon 6777712 6778269 6777712 ID=MS.gene23011.t1.exon1;Parent=MS.gene23011.t1
chr7.2 CDS 6777712 6778269 6777712 ID=cds.MS.gene23011.t1;Parent=MS.gene23011.t1
chr7.2 exon 6778715 6778876 6778715 ID=MS.gene23011.t1.exon2;Parent=MS.gene23011.t1
chr7.2 CDS 6778715 6778876 6778715 ID=cds.MS.gene23011.t1;Parent=MS.gene23011.t1
chr7.2 exon 6779215 6779522 6779215 ID=MS.gene23011.t1.exon3;Parent=MS.gene23011.t1
chr7.2 CDS 6779215 6779522 6779215 ID=cds.MS.gene23011.t1;Parent=MS.gene23011.t1
chr7.2 exon 6780009 6780099 6780009 ID=MS.gene23011.t1.exon4;Parent=MS.gene23011.t1
chr7.2 CDS 6780009 6780099 6780009 ID=cds.MS.gene23011.t1;Parent=MS.gene23011.t1
Gene Sequence

>MS.gene23011

ATGGGTGGTTCTCCTAGAAACCCTAACCCTAACCCTTCATACAAACTATTTCGACCTTGTGATTATTGTGGCAATTCAAACGCAGTTATATACTGCAGAGCAGATTCAGCCAAACTCTGTTTCTCTTGTGACCGTGAAGTTCACTCCACAAATCAACTCTTCTCTAAGCACACACGCTCCTTAATCTGTGATTCATGCGATGATTCACCTGCTACTATACTCTGTTCTACAGAATCCTCTGTTTTCTGTCAAAACTGTGACTGGGAAAATCACAACCTTTCACTATCTTCACCTCATGAACGAAGGCCTCTTGAGGGTTTTACAGGGTGCCCTTCAGTTACTGAGCTTTTGTCGATTCTGGGTTTGCAGGATATTGGAAAAAAATCATTGCTTTTGCCTCAGGAAAGTGTAGGAGATGGGTTTGTTGGGTATGAGATTGAAGGACTGTCTGATATGTTTGTTTGGGATGCTCCTTCTTTTGTTAGTCTTGACGATCTTATTTCTTCTTCCCCTTCTTCTCATTATTATCGTGCTATGGAGGTTCCTCCTTTGCCCAAGGTATAATTGATGGATAATCTCTCTCCTTCTTTCTCTGTTTTTAAATTAGGTAATAGAAATTCATTCTGTCTTTTTAGGATAATTGATTAGTTTATTATTATTTATTTGTTCAGATCTTGATCATAAACAAGGCATGATGGGATTAGTGCTAAATTAGGAAAGTGAAAACATGATTAGTTTTTGGATTTTTTTTTTTTTGTTTTTGGATTTTGGACTGTTTGGAGATAAATGTAAAAGAACATAGTGAAATTATGTGTATATTTTTTTGTTTTAATTCTCTGATTCTTAGGGGAAACAAACCCTAAGTAATTTGGAGTTCGGCTTTACTAAAAATCCTTTAACCACCCCAAAAAAAACCCTTTTAACCACTTGAGTTGAACAAATTGAAATTATGTGTGTATTGCTGCAATTTTAACATGTTCTGGTATTGTTGTTATTGAAACAGAACCGTAAGGCTGCTTGTGGTAGACACAGAGAAGAGATTTTAAATCAGCTTCGTGAGATGACAAAGTCTGAGCCCTATGATCCTGAAGAATATATACCATCGGCAAATTTATCTACAGGTTTTGATTGCGATGTAAAGGCTGATATTGTTCCTTCAAATGAGGTAATGCTTCTATTCATTTGTTGTTTTTGTACTGTGTTGTCGATCCTCATTCCTGATAATGGATTTCTTGTTTTAAGACCATTTTCAACCTTTTAATGTTTATTTGTGTGTATGTATAAATCACAGATGACGCCTTGTTTTGCATCTCTGATTCTCTTGATTCAATGCACCTTGTTTATTTTTCCCTCTTTTTTGATTGCTCCTATCTTCACTCTTTTTGGTAAACGAACTTGCTATGGTATTGATATAAGATGAGCCAGGTGGTTGTTATTCTAATTTCTATGTTCTATTGAAAATAGTACATATATTTACTAATTTTAGTAATGTTATCATTTCAGTGGCTCAGAGAAAGTAGCGAGCCTATGCATCAAGTTGTTCCTGTTGATACATCATTCAAAGCTCACACCGAAGAAATTTCACTTAAACATTCTGTATCTTCTGCTGGGGAGCCTCATACCCAGTGTAACAACGGAGGGACGCCTTCAGAATCTCTCAACCACTGTAACAACGGAGGGACGCCTTCAGAGTATCTCAAGTCTGAAACCTTGTCAACTACTCCTAAAGCCGTTCCTTCTCCATATGAGTTAGCAAGTCAAGAAAGGGATTCTGCATTATTACGGTACAAGCAAAAGAAGAAAACAAGAAGGTATGTGGTCGTGACTCCATATCTGAACTCCATACTTCAAGACATTGAATATATGAACACATTCTTTCGTATGATCATTCATTTAATCTACTCATAACTAGAGTCGAGTATTTTTTTTCTTATATTATCGATGATGACTCCCAAGTAATATGGCTTGATCACTGGATATTTTCATTGGATTTTCCTTTTGATATATTTTATTTGAGAGATATCAAGGAAAAAATAATATTATGCAGCATAGTTTTCTCAATTTTGAAAATTGAAGAAGTTCAATGTAGGTTTTTCTCAAAAAAAACTTCTGTTATTTTCCTGTTCCATTTACTGTGAATTGTGGTTCTGTAATTGATCATGGATTTTCATCTCTTTGCAATTTTCAAATGATGGTTGGATTGTTGATCAATGAGCTAGGTGCATGCACATTTAAGATCTTGATGATTGTTTAAATAAATTCATAACCACCCCATGTATTTACATGAAAAACAACAGATATGACAAGCATATAAGGTATGAATCACGTAAAGTTCGGGCGGAGAGCAGGACTAGAGTTAAGGGCCGATTTGCCAAGATAGAGCACTGA
Protein sequence

>MS.gene23011.t1

MGGSPRNPNPNPSYKLFRPCDYCGNSNAVIYCRADSAKLCFSCDREVHSTNQLFSKHTRSLICDSCDDSPATILCSTESSVFCQNCDWENHNLSLSSPHERRPLEGFTGCPSVTELLSILGLQDIGKKSLLLPQESVGDGFVGYEIEGLSDMFVWDAPSFVSLDDLISSSPSSHYYRAMEVPPLPKNRKAACGRHREEILNQLREMTKSEPYDPEEYIPSANLSTGFDCDVKADIVPSNEWLRESSEPMHQVVPVDTSFKAHTEEISLKHSVSSAGEPHTQCNNGGTPSESLNHCNNGGTPSEYLKSETLSTTPKAVPSPYELASQERDSALLRYKQKKKTRRYDKHIRYESRKVRAESRTRVKGRFAKIEH