AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene23084

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene23084.t1 MTR_4g019670 77.818 559 60 4 1 535 1 519 0.0 785
MS.gene23084.t1 MTR_7g106510 76.565 559 51 6 1 535 1 503 0.0 770
MS.gene23084.t1 MTR_3g093900 46.034 580 258 12 1 535 1 570 1.22e-140 418
MS.gene23084.t1 MTR_8g467500 50.725 276 128 2 13 284 13 284 3.62e-66 216
MS.gene23084.t1 MTR_3g466980 32.121 165 108 2 1 164 1 162 1.80e-23 99.4
MS.gene23084.t1 MTR_5g075380 33.333 156 102 2 7 161 4 158 1.51e-22 94.7
MS.gene23084.t1 MTR_8g036130 37.405 131 80 1 4 132 1 131 3.48e-21 93.2
MS.gene23084.t1 MTR_4g032620 35.246 122 79 0 6 127 3 124 6.01e-21 92.4
MS.gene23084.t1 MTR_3g466830 33.333 150 99 1 6 154 2 151 9.30e-20 86.7
MS.gene23084.t1 MTR_4g031910 40.909 132 75 1 1 132 1 129 3.60e-19 87.0
MS.gene23084.t1 MTR_2g016210 31.034 145 99 1 7 150 4 148 3.99e-19 87.4
MS.gene23084.t1 MTR_1g090710 33.043 115 76 1 6 120 3 116 4.34e-18 82.0
MS.gene23084.t1 MTR_3g065100 33.113 151 100 1 6 155 3 153 1.04e-17 83.2
MS.gene23084.t1 MTR_4g032260 41.053 95 56 0 38 132 35 129 2.01e-17 80.1
MS.gene23084.t1 MTR_3g466890 30.065 153 106 1 6 157 2 154 2.04e-17 80.1
MS.gene23084.t1 MTR_5g047580 34.167 120 75 2 1 120 1 116 2.04e-16 77.0
MS.gene23084.t1 MTR_4g032290 31.613 155 87 3 38 175 35 187 2.22e-16 79.0
MS.gene23084.t1 MTR_2g035610 36.800 125 76 1 1 125 1 122 3.74e-16 75.1
MS.gene23084.t1 MTR_3g031100 29.915 117 82 0 6 122 3 119 4.00e-16 78.6
MS.gene23084.t1 MTR_1g090783 26.207 145 106 1 6 150 2 145 1.78e-15 74.3
MS.gene23084.t1 MTR_4g028800 42.857 70 38 1 7 76 4 71 2.17e-15 71.6
MS.gene23084.t1 MTR_3g031240 27.350 117 85 0 6 122 3 119 3.57e-15 74.3
MS.gene23084.t1 MTR_4g063790 28.125 160 104 4 1 155 1 154 7.17e-15 73.2
MS.gene23084.t1 MTR_3g466930 33.065 124 82 1 35 157 2 125 8.97e-15 71.6
MS.gene23084.t1 MTR_1g090697 32.479 117 74 2 1 115 1 114 1.67e-14 71.6
MS.gene23084.t1 MTR_1g077390 30.328 122 83 2 6 126 3 123 1.99e-14 71.2
MS.gene23084.t1 MTR_3g466900 31.452 124 84 1 35 157 2 125 2.71e-14 70.1
MS.gene23084.t1 MTR_1g077300 33.600 125 78 2 6 126 3 126 8.45e-14 69.7
MS.gene23084.t1 MTR_4g028720 35.374 147 91 3 6 149 3 148 9.10e-14 69.7
MS.gene23084.t1 MTR_1g077320 35.000 120 74 2 1 120 1 116 2.75e-13 68.2
MS.gene23084.t1 MTR_1g084950 37.097 124 70 3 1 120 1 120 3.34e-13 67.8
MS.gene23084.t1 MTR_7g011950 32.895 152 95 4 1 149 1 148 6.49e-13 67.0
MS.gene23084.t1 MTR_3g467080 25.397 126 90 2 6 127 3 128 1.81e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene23084.t1 AT1G65300 28.807 243 145 6 6 232 2 232 1.84e-20 92.0
MS.gene23084.t1 AT2G40210 28.144 167 117 2 4 170 1 164 7.15e-19 89.0
MS.gene23084.t1 AT3G05860 31.818 132 86 2 1 131 1 129 8.81e-17 80.5
MS.gene23084.t1 AT3G05860 31.818 132 86 2 1 131 1 129 9.27e-17 80.9
MS.gene23084.t1 AT5G26650 31.579 114 78 0 7 120 2 115 2.60e-16 81.3
MS.gene23084.t1 AT1G31630 33.043 115 76 1 6 120 2 115 2.81e-16 80.9
MS.gene23084.t1 AT3G05860 31.818 132 86 2 1 131 1 129 2.96e-16 78.2
MS.gene23084.t1 AT5G27960 29.630 135 87 1 7 133 2 136 6.85e-16 79.3
MS.gene23084.t1 AT5G06500 31.293 147 94 3 6 149 3 145 2.61e-15 76.3
MS.gene23084.t1 AT1G31640 31.304 115 78 1 6 120 2 115 2.70e-15 79.0
MS.gene23084.t1 AT5G48670 35.897 117 75 0 6 122 3 119 7.21e-15 76.3
MS.gene23084.t1 AT2G28700 30.769 117 81 0 4 120 1 117 1.00e-14 75.9
MS.gene23084.t1 AT1G65330 32.743 113 76 0 8 120 4 116 1.17e-14 75.1
MS.gene23084.t1 AT5G26630 33.146 178 110 5 1 177 1 170 2.92e-14 72.4
MS.gene23084.t1 AT2G15660 30.597 134 88 4 40 172 30 159 3.54e-13 70.1
MS.gene23084.t1 AT1G22590 25.688 109 78 1 6 114 3 108 8.24e-13 67.0
MS.gene23084.t1 AT5G27810 32.184 87 59 0 34 120 3 89 1.35e-11 62.4

Find 118 sgRNAs with CRISPR-Local

Find 144 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGCTAATCAAGCTAATTT+TGG 0.158650 7.2:-7471976 MS.gene23084:CDS
TTGCTTCCTCAAGAAAATTT+TGG 0.166377 7.2:-7471538 MS.gene23084:CDS
AACTTTGGTGGCAATATTAA+TGG 0.198018 7.2:-7471190 MS.gene23084:CDS
TTGCCTCCTCAAGGATATTT+TGG 0.199048 7.2:-7471760 MS.gene23084:CDS
TTGACTCAAACTTGGTTATT+AGG 0.210241 7.2:+7472487 None:intergenic
CAAAATCTTCAAAGTTAAAT+TGG 0.211371 7.2:+7471512 None:intergenic
TTGTCTCATCAAGGAAATTT+TGG 0.233564 7.2:-7471421 MS.gene23084:CDS
GATTGTCACATGCTCCATTT+TGG 0.244676 7.2:+7472596 None:intergenic
CCAACAACCCTTGTCAGATT+TGG 0.245325 7.2:-7472100 MS.gene23084:CDS
TTTCTTTGTTGATCTTTCTA+AGG 0.250528 7.2:+7472385 None:intergenic
AACGGTGATGGGGTGCATAA+TGG 0.258877 7.2:-7472150 MS.gene23084:CDS
GAAAGGGTTGTTCACCAAAA+TGG 0.296295 7.2:-7472610 MS.gene23084:CDS
AGAAAATGAAGAGACTTTAA+TGG 0.308700 7.2:-7472367 MS.gene23084:CDS
TTAATAAAATGCCCCAGATT+TGG 0.322615 7.2:+7471844 None:intergenic
ACGGTGATGGGGTGCATAAT+GGG 0.323141 7.2:-7472149 MS.gene23084:CDS
AACTTTGTTGACAATAATTA+CGG 0.325383 7.2:-7471142 MS.gene23084:CDS
GAGGCATGTGCGGTTGTGTT+TGG 0.339289 7.2:-7472561 MS.gene23084:CDS
GAAGTTCAAGACAACTTTAG+AGG 0.340558 7.2:-7471304 MS.gene23084:CDS
CAACAACCCTTGTCAGATTT+GGG 0.353572 7.2:-7472099 MS.gene23084:CDS
CAAGTTTGAGTCAATGTCAT+TGG 0.377334 7.2:-7472478 MS.gene23084:CDS
TATCATGGAGATACCAAATC+TGG 0.379695 7.2:-7471857 MS.gene23084:CDS
AGGCATGTGCGGTTGTGTTT+GGG 0.389221 7.2:-7472560 MS.gene23084:CDS
TTTGAAGGTCAAGTAAACTT+TGG 0.391480 7.2:-7471628 MS.gene23084:CDS
GTGATACAAAACCATCAATA+TGG 0.392745 7.2:-7472533 MS.gene23084:CDS
GCAGGAGATGGCCATATTGA+TGG 0.394229 7.2:+7472522 None:intergenic
AAACCACCACTAGAATATTC+AGG 0.410956 7.2:+7471922 None:intergenic
GAAAATGAAGAGACTTTAAT+GGG 0.430958 7.2:-7472366 MS.gene23084:CDS
AACAATATGGGTAGCAACAT+TGG 0.431457 7.2:-7471823 MS.gene23084:CDS
ATAATATATGTAGCAACATA+TGG 0.433282 7.2:-7471273 MS.gene23084:CDS
GATGTCTAGGCATTTAGAAA+AGG 0.433553 7.2:-7472232 MS.gene23084:CDS
ATGTCTAGGCATTTAGAAAA+GGG 0.436802 7.2:-7472231 MS.gene23084:CDS
CCTCCACTTGCAGATCTTAG+TGG 0.439117 7.2:-7472015 MS.gene23084:CDS
TGTGCGGTTGTGTTTGGGCC+AGG 0.446264 7.2:-7472555 MS.gene23084:CDS
CATAATGGGGTTAACATGTA+TGG 0.446371 7.2:-7472135 MS.gene23084:CDS
CAATGACATTGACTCAAACT+TGG 0.455302 7.2:+7472479 None:intergenic
CCAAATCTGACAAGGGTTGT+TGG 0.456247 7.2:+7472100 None:intergenic
TTTCATCAAAACAACTTTGG+TGG 0.457377 7.2:-7471202 MS.gene23084:CDS
GGTGGCAATATTAATGGAGA+TGG 0.459529 7.2:-7471184 MS.gene23084:CDS
TTACTTTACACAACGGTGAT+GGG 0.461878 7.2:-7472161 MS.gene23084:CDS
GGAGGTCAAAGCAACTTTCA+AGG 0.462180 7.2:-7471739 MS.gene23084:CDS
TTGTGTAAAGTAAAAGATAT+TGG 0.463560 7.2:+7472171 None:intergenic
ATACCACCACATACAAATCT+TGG 0.466401 7.2:-7471463 MS.gene23084:CDS
ACTTTGTTGACAATAATTAC+GGG 0.467038 7.2:-7471141 MS.gene23084:CDS
ATATCAACACCACCATTGCT+TGG 0.469029 7.2:+7471232 None:intergenic
ATATTAATGGAGATGGGATG+TGG 0.470498 7.2:-7471177 MS.gene23084:CDS
TACCACATGCAAATCTGAAT+GGG 0.471278 7.2:-7471681 MS.gene23084:CDS
TTTACTTTACACAACGGTGA+TGG 0.473941 7.2:-7472162 MS.gene23084:CDS
ACAATATGGGTAGCAACATT+GGG 0.477464 7.2:-7471822 MS.gene23084:CDS
CTACCACATGCAAATCTGAA+TGG 0.479159 7.2:-7471682 MS.gene23084:CDS
TACGGGAGCAACTTCAACCC+TGG 0.503874 7.2:-7471124 MS.gene23084:CDS
GATATTGGTGCCAACGGTGG+AGG 0.504265 7.2:+7472186 None:intergenic
CTTGCAGATCTTAGTGGTGG+TGG 0.505108 7.2:-7472009 MS.gene23084:CDS
ATTAGGTCTTCAGCCACTGC+AGG 0.513329 7.2:+7472504 None:intergenic
AACAACCTTGGAAGTAGCAT+GGG 0.513933 7.2:-7472042 MS.gene23084:CDS
ATTGGTGCCAACGGTGGAGG+AGG 0.517191 7.2:+7472189 None:intergenic
ATACCACCTCATACAAATCC+TGG 0.520709 7.2:-7471367 MS.gene23084:CDS
TGAGAATAAAACTCGAAGAA+AGG 0.533789 7.2:-7472652 MS.gene23084:CDS
GACATTACAGGTAGCAACAC+AGG 0.536241 7.2:-7471709 MS.gene23084:CDS
GGTGGAGGAGGATTATTAAG+AGG 0.544411 7.2:+7472201 None:intergenic
ATCATGGAGATACCAAATCT+GGG 0.548418 7.2:-7471856 MS.gene23084:CDS
GTGGCAATATTAATGGAGAT+GGG 0.552269 7.2:-7471183 MS.gene23084:CDS
CCAACACCAGGATTTGTATG+AGG 0.556800 7.2:+7471361 None:intergenic
TCTTCAGCCACTGCAGGAGA+TGG 0.560210 7.2:+7472510 None:intergenic
TGCTATAAGAGAAGATTGAA+AGG 0.560605 7.2:-7472627 MS.gene23084:CDS
TTTGATGACAACACAGGTAG+CGG 0.563188 7.2:-7471601 MS.gene23084:CDS
TGGTGGTGGTTGTGATAACT+TGG 0.567708 7.2:-7471995 MS.gene23084:CDS
AGATCACTAGAAAGATGTCT+AGG 0.570407 7.2:-7472245 MS.gene23084:CDS
TAACAACCTTGGAAGTAGCA+TGG 0.574908 7.2:-7472043 MS.gene23084:CDS
TACTTTACACAACGGTGATG+GGG 0.579959 7.2:-7472160 MS.gene23084:CDS
GTAGGTGTGTTGCCTCCTCA+AGG 0.582180 7.2:-7471769 MS.gene23084:CDS
TAATAATCCTCCTCCACCGT+TGG 0.582273 7.2:-7472196 MS.gene23084:CDS
AGTGGTTTCAATAACAACCT+TGG 0.589310 7.2:-7472054 MS.gene23084:CDS
GTATCCCCATGCTACTTCCA+AGG 0.589387 7.2:+7472037 None:intergenic
CCACTAGAATATTCAGGTGA+TGG 0.589851 7.2:+7471928 None:intergenic
CGGTGATGGGGTGCATAATG+GGG 0.590425 7.2:-7472148 MS.gene23084:CDS
GTAAAAGATATTGGTGCCAA+CGG 0.592046 7.2:+7472180 None:intergenic
ACAACACAGGTAGCGGCATG+TGG 0.592125 7.2:-7471594 MS.gene23084:CDS
GACAATCTTATGTGGTATTG+AGG 0.594613 7.2:-7472580 MS.gene23084:CDS
GCTATAAGAGAAGATTGAAA+GGG 0.594807 7.2:-7472626 MS.gene23084:CDS
TTTATTCAGAAGGAAATCCA+GGG 0.595152 7.2:+7471107 None:intergenic
TTTCTCGCCCAAATCTGACA+AGG 0.596335 7.2:+7472092 None:intergenic
CCACATACAAATCTTGGTGT+TGG 0.598589 7.2:-7471457 MS.gene23084:CDS
CATGAAAATCCAAGCAATGG+TGG 0.610991 7.2:-7471241 MS.gene23084:CDS
TTCTCGCCCAAATCTGACAA+GGG 0.612284 7.2:+7472093 None:intergenic
CCACATGAAAATCCAAGCAA+TGG 0.614633 7.2:-7471244 MS.gene23084:CDS
TCACCTGAATATTCTAGTGG+TGG 0.615267 7.2:-7471925 MS.gene23084:CDS
AAAGATATTGGTGCCAACGG+TGG 0.617732 7.2:+7472183 None:intergenic
CCTCATACAAATCCTGGTGT+TGG 0.617961 7.2:-7471361 MS.gene23084:CDS
AAAGTTGATCAAATGAGCAG+TGG 0.618596 7.2:-7472072 MS.gene23084:CDS
TGTCTAGGCATTTAGAAAAG+GGG 0.623976 7.2:-7472230 MS.gene23084:CDS
GAAAATCCTAGTGGTGGTGT+AGG 0.627650 7.2:-7471787 MS.gene23084:CDS
CCATCACCTGAATATTCTAG+TGG 0.635359 7.2:-7471928 MS.gene23084:CDS
GTTGATGTGTTGTCTCATCA+AGG 0.635762 7.2:-7471334 MS.gene23084:CDS
GTTGATGTGTTGTCTCATCA+AGG 0.635762 7.2:-7471430 MS.gene23084:CDS
CCACTTGCAGATCTTAGTGG+TGG 0.641334 7.2:-7472012 MS.gene23084:CDS
ATGCATCAAATTGAAAACGA+AGG 0.641960 7.2:-7472336 MS.gene23084:CDS
TTTGGAGTTGATAACAACAC+AGG 0.642445 7.2:-7471403 MS.gene23084:CDS
CCACATTCAAATTCGAGTGG+TGG 0.643895 7.2:-7471568 MS.gene23084:CDS
ACACCAAGATTTGTATGTGG+TGG 0.650459 7.2:+7471460 None:intergenic
AACACACCTACACCACCACT+AGG 0.650603 7.2:+7471781 None:intergenic
ACATCAACATCACCAACACC+AGG 0.652418 7.2:+7471349 None:intergenic
AATATGGCCATCTCCTGCAG+TGG 0.655817 7.2:-7472517 MS.gene23084:CDS
CCTCCAAAATATCCTTGAGG+AGG 0.656666 7.2:+7471757 None:intergenic
CCAACACCAAGATTTGTATG+TGG 0.658592 7.2:+7471457 None:intergenic
ATGTGGTATTGAGGCATGTG+CGG 0.658684 7.2:-7472571 MS.gene23084:CDS
TGACCTCCAAAATATCCTTG+AGG 0.660910 7.2:+7471754 None:intergenic
TTCCCATTCAGATTTGCATG+TGG 0.661550 7.2:+7471679 None:intergenic
CCACCACTCGAATTTGAATG+TGG 0.662521 7.2:+7471568 None:intergenic
GAGCATGTGACAATCTTATG+TGG 0.668241 7.2:-7472588 MS.gene23084:CDS
ACACCAGGATTTGTATGAGG+TGG 0.668736 7.2:+7471364 None:intergenic
ACATTACAGGTAGCAACACA+GGG 0.671623 7.2:-7471708 MS.gene23084:CDS
TCACATGAAAATCCTAGTGG+TGG 0.674534 7.2:-7471793 MS.gene23084:CDS
CCACTAAGATCTGCAAGTGG+AGG 0.680631 7.2:+7472015 None:intergenic
CAATCACATGAAAATCCTAG+TGG 0.684612 7.2:-7471796 MS.gene23084:CDS
TCATGGAGATACCAAATCTG+GGG 0.689796 7.2:-7471855 MS.gene23084:CDS
CCACCACTAAGATCTGCAAG+TGG 0.694900 7.2:+7472012 None:intergenic
ACAACCTTGGAAGTAGCATG+GGG 0.697964 7.2:-7472041 MS.gene23084:CDS
ATACCACATTCAAATTCGAG+TGG 0.714863 7.2:-7471571 MS.gene23084:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACTTTGTTGACAATAATTA+CGG - chr7.2:7472659-7472678 MS.gene23084:CDS 20.0%
!! ATAATATATGTAGCAACATA+TGG - chr7.2:7472528-7472547 MS.gene23084:CDS 20.0%
!! CAAAATCTTCAAAGTTAAAT+TGG + chr7.2:7472292-7472311 None:intergenic 20.0%
!! TTGTGTAAAGTAAAAGATAT+TGG + chr7.2:7471633-7471652 None:intergenic 20.0%
!!! AGTTTTATTCTCAATCAATT+TGG + chr7.2:7471142-7471161 None:intergenic 20.0%
!!! ATATCTTTTACTTTACACAA+CGG - chr7.2:7471633-7471652 MS.gene23084:CDS 20.0%
! ACTTTGTTGACAATAATTAC+GGG - chr7.2:7472660-7472679 MS.gene23084:CDS 25.0%
! AGAAAATGAAGAGACTTTAA+TGG - chr7.2:7471434-7471453 MS.gene23084:CDS 25.0%
! GAAAATGAAGAGACTTTAAT+GGG - chr7.2:7471435-7471454 MS.gene23084:CDS 25.0%
! TTTCTTTGTTGATCTTTCTA+AGG + chr7.2:7471419-7471438 None:intergenic 25.0%
!! ACTTTTCATCAAAACAACTT+TGG - chr7.2:7472596-7472615 MS.gene23084:CDS 25.0%
!! GGGCATTTTATTAACAATAT+GGG - chr7.2:7471966-7471985 MS.gene23084:CDS 25.0%
!!! GGAAAATTTTGATAGTATCA+TGG - chr7.2:7471929-7471948 MS.gene23084:CDS 25.0%
ATGCATCAAATTGAAAACGA+AGG - chr7.2:7471465-7471484 MS.gene23084:CDS 30.0%
ATGTCTAGGCATTTAGAAAA+GGG - chr7.2:7471570-7471589 MS.gene23084:CDS 30.0%
GCTATAAGAGAAGATTGAAA+GGG - chr7.2:7471175-7471194 MS.gene23084:CDS 30.0%
GTGATACAAAACCATCAATA+TGG - chr7.2:7471268-7471287 MS.gene23084:CDS 30.0%
TATCCTCCAAAAAAGTCAAT+TGG + chr7.2:7471374-7471393 None:intergenic 30.0%
TGAGAATAAAACTCGAAGAA+AGG - chr7.2:7471149-7471168 MS.gene23084:CDS 30.0%
TGCTATAAGAGAAGATTGAA+AGG - chr7.2:7471174-7471193 MS.gene23084:CDS 30.0%
TTAATAAAATGCCCCAGATT+TGG + chr7.2:7471960-7471979 None:intergenic 30.0%
TTGACTCAAACTTGGTTATT+AGG + chr7.2:7471317-7471336 None:intergenic 30.0%
TTTCATCAAAACAACTTTGG+TGG - chr7.2:7472599-7472618 MS.gene23084:CDS 30.0%
TTTGAAGGTCAAGTAAACTT+TGG - chr7.2:7472173-7472192 MS.gene23084:CDS 30.0%
! AACTTTGGTGGCAATATTAA+TGG - chr7.2:7472611-7472630 MS.gene23084:CDS 30.0%
! TGACCTTCAAAATTTTCTTG+AGG + chr7.2:7472164-7472183 None:intergenic 30.0%
! TTGCTTCCTCAAGAAAATTT+TGG - chr7.2:7472263-7472282 MS.gene23084:CDS 30.0%
! TTGGCTAATCAAGCTAATTT+TGG - chr7.2:7471825-7471844 MS.gene23084:CDS 30.0%
! TTGTCTCATCAAGGAAATTT+TGG - chr7.2:7472380-7472399 MS.gene23084:CDS 30.0%
!! GAAGATTTTGATATCAACAC+AGG - chr7.2:7472302-7472321 MS.gene23084:CDS 30.0%
!! GGGGCATTTTATTAACAATA+TGG - chr7.2:7471965-7471984 MS.gene23084:CDS 30.0%
!!! AGCGTTTTTTCAAGACAATT+TGG - chr7.2:7471908-7471927 MS.gene23084:CDS 30.0%
!!! ATTGACTTTTTTGGAGGATA+AGG - chr7.2:7471374-7471393 MS.gene23084:CDS 30.0%
!!! GGTGGTTTTGATAATAGAAT+GGG - chr7.2:7471846-7471865 MS.gene23084:CDS 30.0%
!!! GTGGTTTTGATAATAGAATG+GGG - chr7.2:7471847-7471866 MS.gene23084:CDS 30.0%
!!! TGGTGGTTTTGATAATAGAA+TGG - chr7.2:7471845-7471864 MS.gene23084:CDS 30.0%
!!! TTGACTTTTTTGGAGGATAA+GGG - chr7.2:7471375-7471394 MS.gene23084:CDS 30.0%
AAACCACCACTAGAATATTC+AGG + chr7.2:7471882-7471901 None:intergenic 35.0%
AACAATATGGGTAGCAACAT+TGG - chr7.2:7471978-7471997 MS.gene23084:CDS 35.0%
ACAATATGGGTAGCAACATT+GGG - chr7.2:7471979-7471998 MS.gene23084:CDS 35.0%
AGATCACTAGAAAGATGTCT+AGG - chr7.2:7471556-7471575 MS.gene23084:CDS 35.0%
AGTGGTTTCAATAACAACCT+TGG - chr7.2:7471747-7471766 MS.gene23084:CDS 35.0%
ATACCACATTCAAATTCGAG+TGG - chr7.2:7472230-7472249 MS.gene23084:CDS 35.0%
ATACCACCACATACAAATCT+TGG - chr7.2:7472338-7472357 MS.gene23084:CDS 35.0%
ATATTAATGGAGATGGGATG+TGG - chr7.2:7472624-7472643 MS.gene23084:CDS 35.0%
ATCATGGAGATACCAAATCT+GGG - chr7.2:7471945-7471964 MS.gene23084:CDS 35.0%
CAAGTTTGAGTCAATGTCAT+TGG - chr7.2:7471323-7471342 MS.gene23084:CDS 35.0%
CAATCACATGAAAATCCTAG+TGG - chr7.2:7472005-7472024 MS.gene23084:CDS 35.0%
GAAGTTCAAGACAACTTTAG+AGG - chr7.2:7472497-7472516 MS.gene23084:CDS 35.0%
GACAATCTTATGTGGTATTG+AGG - chr7.2:7471221-7471240 MS.gene23084:CDS 35.0%
GATGTCTAGGCATTTAGAAA+AGG - chr7.2:7471569-7471588 MS.gene23084:CDS 35.0%
GTGGCAATATTAATGGAGAT+GGG - chr7.2:7472618-7472637 MS.gene23084:CDS 35.0%
TACCACATGCAAATCTGAAT+GGG - chr7.2:7472120-7472139 MS.gene23084:CDS 35.0%
TATCATGGAGATACCAAATC+TGG - chr7.2:7471944-7471963 MS.gene23084:CDS 35.0%
TGTCTAGGCATTTAGAAAAG+GGG - chr7.2:7471571-7471590 MS.gene23084:CDS 35.0%
TTACTTTACACAACGGTGAT+GGG - chr7.2:7471640-7471659 MS.gene23084:CDS 35.0%
TTTACTTTACACAACGGTGA+TGG - chr7.2:7471639-7471658 MS.gene23084:CDS 35.0%
! AAAGTTGATCAAATGAGCAG+TGG - chr7.2:7471729-7471748 MS.gene23084:CDS 35.0%
! CATAATGGGGTTAACATGTA+TGG - chr7.2:7471666-7471685 MS.gene23084:CDS 35.0%
! CCTCCTCAAGAAAATTTTGA+AGG - chr7.2:7472158-7472177 MS.gene23084:CDS 35.0%
! CCTTCAAAATTTTCTTGAGG+AGG + chr7.2:7472161-7472180 None:intergenic 35.0%
! CTTCCTCAAGAAAATTTTGG+AGG - chr7.2:7472266-7472285 MS.gene23084:CDS 35.0%
! GCTAATCAAGCTAATTTTGG+TGG - chr7.2:7471828-7471847 MS.gene23084:CDS 35.0%
!! CAAGGTTTTGATGACATTAC+AGG - chr7.2:7472080-7472099 MS.gene23084:CDS 35.0%
!! CAATGACATTGACTCAAACT+TGG + chr7.2:7471325-7471344 None:intergenic 35.0%
!! GTAAAAGATATTGGTGCCAA+CGG + chr7.2:7471624-7471643 None:intergenic 35.0%
!! TTTGGAGTTGATAACAACAC+AGG - chr7.2:7472398-7472417 MS.gene23084:CDS 35.0%
!!! ATTGATGGTTTTGTATCACC+TGG + chr7.2:7471267-7471286 None:intergenic 35.0%
!!! GACTGACCAATTGACTTTTT+TGG - chr7.2:7471365-7471384 MS.gene23084:CDS 35.0%
!!! TGACCAATTGACTTTTTTGG+AGG - chr7.2:7471368-7471387 MS.gene23084:CDS 35.0%
AACAACCTTGGAAGTAGCAT+GGG - chr7.2:7471759-7471778 MS.gene23084:CDS 40.0%
ACACCAAGATTTGTATGTGG+TGG + chr7.2:7472344-7472363 None:intergenic 40.0%
ACATTACAGGTAGCAACACA+GGG - chr7.2:7472093-7472112 MS.gene23084:CDS 40.0%
ATACCACCTCATACAAATCC+TGG - chr7.2:7472434-7472453 MS.gene23084:CDS 40.0%
ATATCAACACCACCATTGCT+TGG + chr7.2:7472572-7472591 None:intergenic 40.0%
CAACAACCCTTGTCAGATTT+GGG - chr7.2:7471702-7471721 MS.gene23084:CDS 40.0%
CATGAAAATCCAAGCAATGG+TGG - chr7.2:7472560-7472579 MS.gene23084:CDS 40.0%
CCAACACCAAGATTTGTATG+TGG + chr7.2:7472347-7472366 None:intergenic 40.0%
CCACATGAAAATCCAAGCAA+TGG - chr7.2:7472557-7472576 MS.gene23084:CDS 40.0%
CCACTAGAATATTCAGGTGA+TGG + chr7.2:7471876-7471895 None:intergenic 40.0%
CCATCACCTGAATATTCTAG+TGG - chr7.2:7471873-7471892 MS.gene23084:CDS 40.0%
CTACCACATGCAAATCTGAA+TGG - chr7.2:7472119-7472138 MS.gene23084:CDS 40.0%
GAAAGGGTTGTTCACCAAAA+TGG - chr7.2:7471191-7471210 MS.gene23084:CDS 40.0%
GAGCATGTGACAATCTTATG+TGG - chr7.2:7471213-7471232 MS.gene23084:CDS 40.0%
GGTGGCAATATTAATGGAGA+TGG - chr7.2:7472617-7472636 MS.gene23084:CDS 40.0%
GTTGATGTGTTGTCTCATCA+AGG - chr7.2:7472371-7472390 MS.gene23084:CDS 40.0%
TAACAACCTTGGAAGTAGCA+TGG - chr7.2:7471758-7471777 MS.gene23084:CDS 40.0%
TACTTTACACAACGGTGATG+GGG - chr7.2:7471641-7471660 MS.gene23084:CDS 40.0%
TCACATGAAAATCCTAGTGG+TGG - chr7.2:7472008-7472027 MS.gene23084:CDS 40.0%
TCACCTGAATATTCTAGTGG+TGG - chr7.2:7471876-7471895 MS.gene23084:CDS 40.0%
TCATGGAGATACCAAATCTG+GGG - chr7.2:7471946-7471965 MS.gene23084:CDS 40.0%
TGACCTCCAAAATATCCTTG+AGG + chr7.2:7472050-7472069 None:intergenic 40.0%
TTCCCATTCAGATTTGCATG+TGG + chr7.2:7472125-7472144 None:intergenic 40.0%
! CCACATACAAATCTTGGTGT+TGG - chr7.2:7472344-7472363 MS.gene23084:CDS 40.0%
! CCATTGCTTGGATTTTCATG+TGG + chr7.2:7472560-7472579 None:intergenic 40.0%
! GATTGTCACATGCTCCATTT+TGG + chr7.2:7471208-7471227 None:intergenic 40.0%
! TGGCCTCCAAAATTTTCTTG+AGG + chr7.2:7472272-7472291 None:intergenic 40.0%
! TTGCCTCCTCAAGGATATTT+TGG - chr7.2:7472041-7472060 MS.gene23084:CDS 40.0%
! TTGCTTGGATTTTCATGTGG+AGG + chr7.2:7472557-7472576 None:intergenic 40.0%
! TTTGATGACAACACAGGTAG+CGG - chr7.2:7472200-7472219 MS.gene23084:CDS 40.0%
!!! GGATGTTTTGATGACAACAC+AGG - chr7.2:7472194-7472213 MS.gene23084:CDS 40.0%
ACAACCTTGGAAGTAGCATG+GGG - chr7.2:7471760-7471779 MS.gene23084:CDS 45.0%
ACACCAGGATTTGTATGAGG+TGG + chr7.2:7472440-7472459 None:intergenic 45.0%
ACATCAACATCACCAACACC+AGG + chr7.2:7472359-7472378 None:intergenic 45.0%
CCAAATCTGACAAGGGTTGT+TGG + chr7.2:7471704-7471723 None:intergenic 45.0%
CCAACAACCCTTGTCAGATT+TGG - chr7.2:7471701-7471720 MS.gene23084:CDS 45.0%
CCAACACCAGGATTTGTATG+AGG + chr7.2:7472443-7472462 None:intergenic 45.0%
CCACATTCAAATTCGAGTGG+TGG - chr7.2:7472233-7472252 MS.gene23084:CDS 45.0%
CCACCACTCGAATTTGAATG+TGG + chr7.2:7472236-7472255 None:intergenic 45.0%
CCTCATACAAATCCTGGTGT+TGG - chr7.2:7472440-7472459 MS.gene23084:CDS 45.0%
CCTCCAAAATATCCTTGAGG+AGG + chr7.2:7472047-7472066 None:intergenic 45.0%
GACATTACAGGTAGCAACAC+AGG - chr7.2:7472092-7472111 MS.gene23084:CDS 45.0%
GGAGGTCAAAGCAACTTTCA+AGG - chr7.2:7472062-7472081 MS.gene23084:CDS 45.0%
GGTGGAGGAGGATTATTAAG+AGG + chr7.2:7471603-7471622 None:intergenic 45.0%
TAATAATCCTCCTCCACCGT+TGG - chr7.2:7471605-7471624 MS.gene23084:CDS 45.0%
TTCTCGCCCAAATCTGACAA+GGG + chr7.2:7471711-7471730 None:intergenic 45.0%
TTTCTCGCCCAAATCTGACA+AGG + chr7.2:7471712-7471731 None:intergenic 45.0%
! ATGTGGTATTGAGGCATGTG+CGG - chr7.2:7471230-7471249 MS.gene23084:CDS 45.0%
! GAAAATCCTAGTGGTGGTGT+AGG - chr7.2:7472014-7472033 MS.gene23084:CDS 45.0%
!! AAAGATATTGGTGCCAACGG+TGG + chr7.2:7471621-7471640 None:intergenic 45.0%
!! CCTCCTCAAGGATATTTTGG+AGG - chr7.2:7472044-7472063 MS.gene23084:CDS 45.0%
!! TGGTGGTGGTTGTGATAACT+TGG - chr7.2:7471806-7471825 MS.gene23084:CDS 45.0%
AACACACCTACACCACCACT+AGG + chr7.2:7472023-7472042 None:intergenic 50.0%
AATATGGCCATCTCCTGCAG+TGG - chr7.2:7471284-7471303 MS.gene23084:CDS 50.0%
AGGCATGTGCGGTTGTGTTT+GGG - chr7.2:7471241-7471260 MS.gene23084:CDS 50.0%
ATTAGGTCTTCAGCCACTGC+AGG + chr7.2:7471300-7471319 None:intergenic 50.0%
CCACCACTAAGATCTGCAAG+TGG + chr7.2:7471792-7471811 None:intergenic 50.0%
CCACTAAGATCTGCAAGTGG+AGG + chr7.2:7471789-7471808 None:intergenic 50.0%
CCACTTGCAGATCTTAGTGG+TGG - chr7.2:7471789-7471808 MS.gene23084:CDS 50.0%
CCTCCACTTGCAGATCTTAG+TGG - chr7.2:7471786-7471805 MS.gene23084:CDS 50.0%
CTTGCAGATCTTAGTGGTGG+TGG - chr7.2:7471792-7471811 MS.gene23084:CDS 50.0%
GCAGGAGATGGCCATATTGA+TGG + chr7.2:7471282-7471301 None:intergenic 50.0%
! GTATCCCCATGCTACTTCCA+AGG + chr7.2:7471767-7471786 None:intergenic 50.0%
!! AACGGTGATGGGGTGCATAA+TGG - chr7.2:7471651-7471670 MS.gene23084:CDS 50.0%
!! ACGGTGATGGGGTGCATAAT+GGG - chr7.2:7471652-7471671 MS.gene23084:CDS 50.0%
GAGGCATGTGCGGTTGTGTT+TGG - chr7.2:7471240-7471259 MS.gene23084:CDS 55.0%
GTAGGTGTGTTGCCTCCTCA+AGG - chr7.2:7472032-7472051 MS.gene23084:CDS 55.0%
TACGGGAGCAACTTCAACCC+TGG - chr7.2:7472677-7472696 MS.gene23084:CDS 55.0%
TCTTCAGCCACTGCAGGAGA+TGG + chr7.2:7471294-7471313 None:intergenic 55.0%
! ACAACACAGGTAGCGGCATG+TGG - chr7.2:7472207-7472226 MS.gene23084:CDS 55.0%
!! CGGTGATGGGGTGCATAATG+GGG - chr7.2:7471653-7471672 MS.gene23084:CDS 55.0%
!! GATATTGGTGCCAACGGTGG+AGG + chr7.2:7471618-7471637 None:intergenic 55.0%
TGTGCGGTTGTGTTTGGGCC+AGG - chr7.2:7471246-7471265 MS.gene23084:CDS 60.0%
!! ATTGGTGCCAACGGTGGAGG+AGG + chr7.2:7471615-7471634 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 7471108 7472715 7471108 ID=MS.gene23084
chr7.2 mRNA 7471108 7472715 7471108 ID=MS.gene23084.t1;Parent=MS.gene23084
chr7.2 exon 7471108 7472715 7471108 ID=MS.gene23084.t1.exon1;Parent=MS.gene23084.t1
chr7.2 CDS 7471108 7472715 7471108 ID=cds.MS.gene23084.t1;Parent=MS.gene23084.t1
Gene Sequence

>MS.gene23084

ATGACTAGAATCAGAAAAAAGAAGATCACATCCAAATTGATTGAGAATAAAACTCGAAGAAAGGCGTGCTATAAGAGAAGATTGAAAGGGTTGTTCACCAAAATGGAGCATGTGACAATCTTATGTGGTATTGAGGCATGTGCGGTTGTGTTTGGGCCAGGTGATACAAAACCATCAATATGGCCATCTCCTGCAGTGGCTGAAGACCTAATAACCAAGTTTGAGTCAATGTCATTGGATGTGCAATCGAAAAATAAGACTGACCAATTGACTTTTTTGGAGGATAAGGGCAAAAAACTTGAAGCAAGCCTTAGAAAGATCAACAAAGAAAATGAAGAGACTTTAATGGGAGCTTATATGCATCAAATTGAAAACGAAGGTAAGTCTTTAGATGATTTTGCTCATGATGTTCTGAATCGTTTGATTGCTTTTACTCTTGAAAAAATTAAGATCACTAGAAAGATGTCTAGGCATTTAGAAAAGGGGATCTTGCCTCTTAATAATCCTCCTCCACCGTTGGCACCAATATCTTTTACTTTACACAACGGTGATGGGGTGCATAATGGGGTTAACATGTATGGACATTTTTTGAACCAACAACCCTTGTCAGATTTGGGCGAGAAAGTTGATCAAATGAGCAGTGGTTTCAATAACAACCTTGGAAGTAGCATGGGGATACCTCCACTTGCAGATCTTAGTGGTGGTGGTTGTGATAACTTGGCTAATCAAGCTAATTTTGGTGGTTTTGATAATAGAATGGGGATACCATCACCTGAATATTCTAGTGGTGGTTTTGATACAGCGTTTTTTCAAGACAATTTGGAAAATTTTGATAGTATCATGGAGATACCAAATCTGGGGCATTTTATTAACAATATGGGTAGCAACATTGGGATACAATCACATGAAAATCCTAGTGGTGGTGTAGGTGTGTTGCCTCCTCAAGGATATTTTGGAGGTCAAAGCAACTTTCAAGGTTTTGATGACATTACAGGTAGCAACACAGGGATACTACCACATGCAAATCTGAATGGGAATGTTGATTCGTTGCCTCCTCAAGAAAATTTTGAAGGTCAAGTAAACTTTGGATGTTTTGATGACAACACAGGTAGCGGCATGTGGATACCACATTCAAATTCGAGTGGTGGTGATACATTGCTTCCTCAAGAAAATTTTGGAGGCCAATTTAACTTTGAAGATTTTGATATCAACACAGGTAGCAACATGTTGATACCACCACATACAAATCTTGGTGTTGGTGATGTTGATGTGTTGTCTCATCAAGGAAATTTTGGAGTTGATAACAACACAGGTAGCAACATGTTGATACCACCTCATACAAATCCTGGTGTTGGTGATGTTGATGTGTTGTCTCATCAAGGAAATTTTGAAGTTCAAGACAACTTTAGAGGTTTTGATGATAATATATGTAGCAACATATGGAAACCTCCACATGAAAATCCAAGCAATGGTGGTGTTGATATGATGACTTTTCATCAAAACAACTTTGGTGGCAATATTAATGGAGATGGGATGTGGAGTTTCAATGCAAACTTTGTTGACAATAATTACGGGAGCAACTTCAACCCTGGATTTCCTTCTGAATAA
Protein sequence

>MS.gene23084.t1

MTRIRKKKITSKLIENKTRRKACYKRRLKGLFTKMEHVTILCGIEACAVVFGPGDTKPSIWPSPAVAEDLITKFESMSLDVQSKNKTDQLTFLEDKGKKLEASLRKINKENEETLMGAYMHQIENEGKSLDDFAHDVLNRLIAFTLEKIKITRKMSRHLEKGILPLNNPPPPLAPISFTLHNGDGVHNGVNMYGHFLNQQPLSDLGEKVDQMSSGFNNNLGSSMGIPPLADLSGGGCDNLANQANFGGFDNRMGIPSPEYSSGGFDTAFFQDNLENFDSIMEIPNLGHFINNMGSNIGIQSHENPSGGVGVLPPQGYFGGQSNFQGFDDITGSNTGILPHANLNGNVDSLPPQENFEGQVNFGCFDDNTGSGMWIPHSNSSGGDTLLPQENFGGQFNFEDFDINTGSNMLIPPHTNLGVGDVDVLSHQGNFGVDNNTGSNMLIPPHTNPGVGDVDVLSHQGNFEVQDNFRGFDDNICSNIWKPPHENPSNGGVDMMTFHQNNFGGNINGDGMWSFNANFVDNNYGSNFNPGFPSE