AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene23186

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene23186.t1 MTR_1g093095 74.233 163 39 1 32 191 99 261 6.56e-94 276
MS.gene23186.t1 MTR_1g016010 36.620 142 79 5 40 179 62 194 1.19e-20 89.4
MS.gene23186.t1 MTR_1g112270 36.301 146 83 5 35 179 71 207 5.55e-20 87.8
MS.gene23186.t1 MTR_1g112270 36.301 146 83 5 35 179 60 196 6.06e-20 87.8
MS.gene23186.t1 MTR_4g059870 37.143 140 77 5 42 179 61 191 1.05e-19 86.7
MS.gene23186.t1 MTR_1g094115 38.686 137 72 6 45 179 56 182 1.07e-19 87.0
MS.gene23186.t1 MTR_1g094115 36.735 147 81 6 35 179 63 199 1.16e-19 86.7
MS.gene23186.t1 MTR_2g093960 36.054 147 83 5 35 179 48 185 1.49e-19 85.9
MS.gene23186.t1 MTR_8g017210 35.252 139 80 4 42 179 85 214 1.82e-19 86.3
MS.gene23186.t1 MTR_2g099990 34.247 146 86 4 35 179 62 198 5.32e-19 84.7
MS.gene23186.t1 MTR_2g090745 34.932 146 85 5 35 179 23 159 6.47e-19 84.3
MS.gene23186.t1 MTR_2g099990 34.783 138 80 4 43 179 1 129 2.84e-18 82.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene23186.t1 AT3G57670 87.931 174 21 0 29 202 198 371 3.33e-119 343
MS.gene23186.t1 AT3G20880 74.742 194 42 3 14 202 218 409 1.83e-106 312
MS.gene23186.t1 AT1G51220 80.000 175 31 2 32 202 162 336 5.06e-105 306
MS.gene23186.t1 AT1G13290 70.718 181 49 3 10 188 65 243 2.02e-95 280
MS.gene23186.t1 AT1G08290 72.781 169 42 2 32 196 164 332 7.62e-94 278
MS.gene23186.t1 AT1G34790 74.706 170 43 0 33 202 130 299 1.25e-93 276
MS.gene23186.t1 AT1G34370 39.456 147 78 4 42 179 28 172 8.48e-27 103
MS.gene23186.t1 AT1G34370 34.574 188 104 6 9 179 197 382 2.67e-26 105
MS.gene23186.t1 AT1G34370 34.574 188 104 6 9 179 197 382 2.67e-26 105
MS.gene23186.t1 AT5G22890 38.621 145 82 3 42 179 211 355 1.25e-23 97.1
MS.gene23186.t1 AT1G55110 38.028 142 77 6 40 179 84 216 6.97e-21 90.1
MS.gene23186.t1 AT1G55110 38.028 142 77 6 40 179 84 216 6.97e-21 90.1
MS.gene23186.t1 AT1G55110 38.028 142 77 6 40 179 84 216 6.97e-21 90.1
MS.gene23186.t1 AT2G02070 36.301 146 83 4 35 179 68 204 2.66e-20 88.6
MS.gene23186.t1 AT2G02070 36.301 146 83 4 35 179 68 204 2.66e-20 88.6
MS.gene23186.t1 AT2G02080 36.879 141 79 4 40 179 75 206 2.86e-20 88.6
MS.gene23186.t1 AT2G02080 36.879 141 79 4 40 179 75 206 2.86e-20 88.6
MS.gene23186.t1 AT2G02080 36.879 141 79 4 40 179 75 206 2.86e-20 88.6
MS.gene23186.t1 AT2G02080 36.879 141 79 4 40 179 75 206 2.86e-20 88.6
MS.gene23186.t1 AT1G14580 36.301 146 83 4 35 179 83 219 6.78e-20 87.4
MS.gene23186.t1 AT1G14580 36.301 146 83 4 35 179 69 205 6.91e-20 87.4
MS.gene23186.t1 AT1G14580 36.301 146 83 4 35 179 69 205 6.91e-20 87.4
MS.gene23186.t1 AT5G03150 33.333 165 93 5 41 204 75 223 7.83e-20 87.4
MS.gene23186.t1 AT2G02080 36.957 138 77 4 43 179 1 129 1.10e-19 86.7
MS.gene23186.t1 AT2G02080 36.957 138 77 4 43 179 1 129 1.10e-19 86.7
MS.gene23186.t1 AT5G66730 35.915 142 79 5 40 179 53 184 1.04e-18 84.0
MS.gene23186.t1 AT5G44160 33.133 166 93 5 42 206 21 169 1.34e-18 83.6
MS.gene23186.t1 AT5G44160 32.934 167 94 5 41 206 59 208 1.50e-18 83.6
MS.gene23186.t1 AT3G45260 36.691 139 79 4 42 179 62 192 3.37e-18 82.4
MS.gene23186.t1 AT3G45260 36.691 139 79 4 42 179 62 192 3.37e-18 82.4
MS.gene23186.t1 AT1G03840 34.247 146 86 5 35 179 55 191 4.34e-18 82.4
MS.gene23186.t1 AT1G03840 34.247 146 86 5 35 179 57 193 4.52e-18 82.0
MS.gene23186.t1 AT5G60470 35.294 136 78 4 42 175 58 185 5.32e-18 82.0
MS.gene23186.t1 AT5G60470 35.294 136 78 4 42 175 67 194 6.17e-18 81.6
MS.gene23186.t1 AT5G60470 35.294 136 78 4 42 175 63 190 7.41e-18 81.6
MS.gene23186.t1 AT3G13810 34.014 147 86 5 35 179 86 223 1.92e-17 80.5
MS.gene23186.t1 AT3G13810 34.014 147 86 5 35 179 86 223 1.92e-17 80.5
MS.gene23186.t1 AT3G13810 34.014 147 86 5 35 179 87 224 1.96e-17 80.5
MS.gene23186.t1 AT4G02670 33.562 146 88 5 35 179 69 206 2.09e-17 80.1
MS.gene23186.t1 AT3G13810 34.014 147 86 5 35 179 73 210 2.10e-17 80.1
MS.gene23186.t1 AT4G02670 33.562 146 88 5 35 179 71 208 2.11e-17 80.1
MS.gene23186.t1 AT3G13810 34.014 147 86 5 35 179 81 218 2.16e-17 80.1
MS.gene23186.t1 AT3G13810 34.014 147 86 5 35 179 67 204 2.27e-17 80.1
MS.gene23186.t1 AT3G50700 33.544 158 85 6 40 195 55 194 3.19e-17 79.7
MS.gene23186.t1 AT1G25250 28.758 153 99 5 26 175 17 162 6.41e-14 69.7
MS.gene23186.t1 AT1G25250 30.935 139 86 5 40 175 54 185 1.02e-13 69.3
MS.gene23186.t1 AT1G68130 31.655 139 84 5 40 175 62 192 5.68e-13 67.4
MS.gene23186.t1 AT2G01940 30.935 139 85 5 40 175 65 195 1.09e-11 63.5

Find 41 sgRNAs with CRISPR-Local

Find 122 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTTATGGTCATGGTGCTTT+TGG 0.295781 8.2:+62563531 MS.gene23186:CDS
CATATTAAAGCCTTTGGTTA+TGG 0.310320 8.2:+62563516 MS.gene23186:CDS
AGAAGAATTGTGGCAAAATA+TGG 0.329283 8.2:+62563445 MS.gene23186:CDS
AAGGGGCCAGATTCTCTAAA+AGG 0.343680 8.2:+62563219 MS.gene23186:CDS
AAAGACCATATTAAAGCCTT+TGG 0.344662 8.2:+62563510 MS.gene23186:CDS
GATTTCTGAGCAACAACCTT+TGG 0.368710 8.2:+62561250 MS.gene23186:CDS
CATAACCAAAGGCTTTAATA+TGG 0.384327 8.2:-62563515 None:intergenic
CTCATCAAATTGCATAGAAA+TGG 0.392609 8.2:+62561205 MS.gene23186:CDS
CAACAGATACAACAATCTTC+AGG 0.407884 8.2:+62561370 MS.gene23186:CDS
CATTTGCAGTGAAAGGTGAT+TGG 0.425078 8.2:+62563412 MS.gene23186:CDS
ACACCTTCTCAAATTCTCAT+TGG 0.440374 8.2:+62561308 MS.gene23186:CDS
TGAACAACAAGGGTCAGTAT+TGG 0.446866 8.2:+62561279 MS.gene23186:CDS
CCATGCTATTGTTGTGCACC+AGG 0.454587 8.2:+62563270 MS.gene23186:CDS
AAAGCCTTTGGTTATGGTCA+TGG 0.479825 8.2:+62563522 MS.gene23186:CDS
TGAGAGGCTTTGCTCTAGGA+TGG 0.497344 8.2:-62563311 None:intergenic
CAGATGCATATGTGGGGACA+TGG 0.509465 8.2:+62563183 MS.gene23186:intron
TCTTTGAGAGGCTTTGCTCT+AGG 0.513133 8.2:-62563315 None:intergenic
ATGAGAATTTGAGAAGGTGT+TGG 0.518525 8.2:-62561305 None:intergenic
CCTTATATGTGTAGAAAATG+TGG 0.531273 8.2:+62563384 MS.gene23186:CDS
TTGTTGTTCAATTTATCCAA+AGG 0.534250 8.2:-62561266 None:intergenic
CATGGATCTCAATACAGAAA+GGG 0.536031 8.2:+62563201 MS.gene23186:CDS
TTGCAAGAAGAAGATGAAGT+AGG 0.553002 8.2:+62563564 MS.gene23186:CDS
TGCAAGAAGAAGATGAAGTA+GGG 0.562185 8.2:+62563565 MS.gene23186:CDS
ACACATTATAAGAGAAAGCA+TGG 0.564164 8.2:+62563354 MS.gene23186:CDS
GGTAGCCTTAGCATTGCTGT+TGG 0.572264 8.2:-62563249 None:intergenic
CACAACCAACAGCAATGCTA+AGG 0.579227 8.2:+62563244 MS.gene23186:CDS
AGAGTTCTAAAATCTTTGAG+AGG 0.584007 8.2:-62563327 None:intergenic
ACATGGATCTCAATACAGAA+AGG 0.588548 8.2:+62563200 MS.gene23186:CDS
AAAATATGGTATTGTTTGTG+TGG 0.602783 8.2:+62563459 MS.gene23186:CDS
GGGTCAGAAATTGAACATGA+TGG 0.603687 8.2:+62563585 MS.gene23186:CDS
GGCAAATCATTTGCAGTGAA+AGG 0.616551 8.2:+62563405 MS.gene23186:CDS
TTGGATAAATTGAACAACAA+GGG 0.616704 8.2:+62561269 MS.gene23186:CDS
ATGGATCTCAATACAGAAAG+GGG 0.624745 8.2:+62563202 MS.gene23186:CDS
AGAACACATGAGAAGAATTG+TGG 0.625082 8.2:+62563435 MS.gene23186:CDS
TCAATGTTATGCTTGCAACC+TGG 0.646006 8.2:-62563288 None:intergenic
TCAGAAATTGAACATGATGG+TGG 0.646397 8.2:+62563588 MS.gene23186:CDS
TTTGGATAAATTGAACAACA+AGG 0.660452 8.2:+62561268 MS.gene23186:CDS
AGCACCATGACCATAACCAA+AGG 0.668968 8.2:-62563526 None:intergenic
ACAGGACAAGAGAATTGCGT+AGG 0.670453 8.2:-62561332 None:intergenic
CCTGGTGCACAACAATAGCA+TGG 0.670992 8.2:-62563270 None:intergenic
GGACCAATGAGAATTTGAGA+AGG 0.690488 8.2:-62561311 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CATTCAAAATTATATATATA+TGG + chr8.2:62561940-62561959 MS.gene23186:intron 10.0%
!! CTTAATTATACTTAAATTAT+TGG - chr8.2:62561997-62562016 None:intergenic 10.0%
!!! CATATATATATAATTTTGAA+TGG - chr8.2:62561942-62561961 None:intergenic 10.0%
!!! TTCTTTATTTACTTTTTTTT+TGG + chr8.2:62562235-62562254 MS.gene23186:intron 10.0%
!! GATATATTTAAGAGAAATTA+GGG + chr8.2:62563020-62563039 MS.gene23186:intron 15.0%
!! TGATATATTTAAGAGAAATT+AGG + chr8.2:62563019-62563038 MS.gene23186:intron 15.0%
!!! AAAATGTAATTAATTTTGTG+TGG + chr8.2:62562952-62562971 MS.gene23186:intron 15.0%
!!! ATTTTCTTTTCTAAATTTAG+GGG - chr8.2:62561525-62561544 None:intergenic 15.0%
!!! CATTTTCTTTTCTAAATTTA+GGG - chr8.2:62561526-62561545 None:intergenic 15.0%
!!! TCATTTTCTTTTCTAAATTT+AGG - chr8.2:62561527-62561546 None:intergenic 15.0%
!! AAAAAACAGAAGTAAAAACA+TGG - chr8.2:62561481-62561500 None:intergenic 20.0%
!! AAGATGCATATAAAAATTCA+AGG - chr8.2:62562311-62562330 None:intergenic 20.0%
!! ACTAGTTATTCCATTTATAT+AGG + chr8.2:62562851-62562870 MS.gene23186:intron 20.0%
!! ATTACGATGAGTATATATTT+AGG - chr8.2:62562353-62562372 None:intergenic 20.0%
!! GAAAAAAAAAACATGCAAAA+GGG - chr8.2:62561602-62561621 None:intergenic 20.0%
!! TTAGAACAATTTCTACAAAA+GGG - chr8.2:62562050-62562069 None:intergenic 20.0%
!! TTATTCCATTTATATAGGTT+CGG + chr8.2:62562856-62562875 MS.gene23186:intron 20.0%
!! TTGAAACTAATGTACAAATT+TGG - chr8.2:62562412-62562431 None:intergenic 20.0%
!!! AATAGAAAACCAAGTATTTT+TGG - chr8.2:62562178-62562197 None:intergenic 20.0%
!!! ATTTCTAGAAATAACAAAAC+TGG + chr8.2:62562594-62562613 MS.gene23186:intron 20.0%
!!! GTTATTTGAAACTAACAAAA+AGG - chr8.2:62561624-62561643 None:intergenic 20.0%
!!! TATAATTTTGAATGGCTTAA+AGG - chr8.2:62561934-62561953 None:intergenic 20.0%
!!! TTTGTTACTTTCTTTTGTTA+GGG + chr8.2:62562267-62562286 MS.gene23186:intron 20.0%
!!! TTTTGTTACTTTCTTTTGTT+AGG + chr8.2:62562266-62562285 MS.gene23186:intron 20.0%
! AAAAACCGAACCTATATAAA+TGG - chr8.2:62562864-62562883 None:intergenic 25.0%
! AAAATATGGTATTGTTTGTG+TGG + chr8.2:62563459-62563478 MS.gene23186:CDS 25.0%
! ATGTGTATCAAGAATCATAA+TGG + chr8.2:62561561-62561580 MS.gene23186:intron 25.0%
! ATTACCATAAAATTGAAGAC+AGG - chr8.2:62562204-62562223 None:intergenic 25.0%
! ATTGAACTAGAATTGAAAGT+TGG - chr8.2:62562573-62562592 None:intergenic 25.0%
! CTTAGAACAATTTCTACAAA+AGG - chr8.2:62562051-62562070 None:intergenic 25.0%
! GAACTTATTGTAGGTAAATT+TGG + chr8.2:62562437-62562456 MS.gene23186:intron 25.0%
! GCATATAAAAATTCAAGGAA+TGG - chr8.2:62562306-62562325 None:intergenic 25.0%
! GGAAAAAAAAAACATGCAAA+AGG - chr8.2:62561603-62561622 None:intergenic 25.0%
! GTGATTTAGACAAAATCATT+GGG - chr8.2:62562721-62562740 None:intergenic 25.0%
! TATAAAAATTCAAGGAATGG+TGG - chr8.2:62562303-62562322 None:intergenic 25.0%
! TATTTAAGAGAAATTAGGGA+CGG + chr8.2:62563024-62563043 MS.gene23186:intron 25.0%
! TCAAATGATGAACTTATTGT+AGG + chr8.2:62562428-62562447 MS.gene23186:intron 25.0%
! TGTGATTTAGACAAAATCAT+TGG - chr8.2:62562722-62562741 None:intergenic 25.0%
! TTGAACTAGAATTGAAAGTT+GGG - chr8.2:62562572-62562591 None:intergenic 25.0%
! TTGGATAAATTGAACAACAA+GGG + chr8.2:62561269-62561288 MS.gene23186:CDS 25.0%
! TTTGGATAAATTGAACAACA+AGG + chr8.2:62561268-62561287 MS.gene23186:CDS 25.0%
!! GCTCAGATTTTAAACATAAA+AGG + chr8.2:62563481-62563500 MS.gene23186:CDS 25.0%
!! TTGTTGTTCAATTTATCCAA+AGG - chr8.2:62561269-62561288 None:intergenic 25.0%
!!! AACTGGTCTTTATTTTATCA+TGG + chr8.2:62562092-62562111 MS.gene23186:intron 25.0%
!!! ATATTTCATTTTTGTGTCAC+TGG + chr8.2:62562636-62562655 MS.gene23186:intron 25.0%
!!! GTAGAAATTGTTCTAAGTTT+TGG + chr8.2:62562054-62562073 MS.gene23186:intron 25.0%
AAAGACCATATTAAAGCCTT+TGG + chr8.2:62563510-62563529 MS.gene23186:CDS 30.0%
AATATATGGGTGCATCTTTA+TGG + chr8.2:62563155-62563174 MS.gene23186:intron 30.0%
ACACATTATAAGAGAAAGCA+TGG + chr8.2:62563354-62563373 MS.gene23186:CDS 30.0%
ACAGAAAATCACAAGTCTAA+AGG + chr8.2:62562486-62562505 MS.gene23186:intron 30.0%
AGAAGAATTGTGGCAAAATA+TGG + chr8.2:62563445-62563464 MS.gene23186:CDS 30.0%
CATATTAAAGCCTTTGGTTA+TGG + chr8.2:62563516-62563535 MS.gene23186:CDS 30.0%
CCTTATATGTGTAGAAAATG+TGG + chr8.2:62563384-62563403 MS.gene23186:CDS 30.0%
CTCATCAAATTGCATAGAAA+TGG + chr8.2:62561205-62561224 MS.gene23186:CDS 30.0%
CTGAAAAATAAATGCAAGAC+TGG + chr8.2:62562752-62562771 MS.gene23186:intron 30.0%
GGAATAGTATATTCAACAGT+GGG - chr8.2:62562463-62562482 None:intergenic 30.0%
GTCTGTGATAAGATCATATA+TGG + chr8.2:62561906-62561925 MS.gene23186:intron 30.0%
GTTAGGAAAATATGGCAATA+AGG - chr8.2:62561447-62561466 None:intergenic 30.0%
TAGATGCAGTTAGGAAAATA+TGG - chr8.2:62561455-62561474 None:intergenic 30.0%
TGCAACAAGAAAACTAAAGA+GGG + chr8.2:62563081-62563100 MS.gene23186:intron 30.0%
TGGAATAGTATATTCAACAG+TGG - chr8.2:62562464-62562483 None:intergenic 30.0%
TTGCAACAAGAAAACTAAAG+AGG + chr8.2:62563080-62563099 MS.gene23186:intron 30.0%
! AGACTTGTGATTTTCTGTTA+TGG - chr8.2:62562484-62562503 None:intergenic 30.0%
! CATAACCAAAGGCTTTAATA+TGG - chr8.2:62563518-62563537 None:intergenic 30.0%
! CCACATTTTCTACACATATA+AGG - chr8.2:62563387-62563406 None:intergenic 30.0%
! TCTTGAAAACTATGCTTTTG+AGG + chr8.2:62561401-62561420 MS.gene23186:intron 30.0%
!! AGAGTTCTAAAATCTTTGAG+AGG - chr8.2:62563330-62563349 None:intergenic 30.0%
!! ATTTCTGAGACATCAATTGA+AGG - chr8.2:62561968-62561987 None:intergenic 30.0%
!!! TTTTCATTGATTTGCAGTAC+TGG - chr8.2:62561787-62561806 None:intergenic 30.0%
AACCTTGTGCCAAAAATACT+TGG + chr8.2:62562166-62562185 MS.gene23186:intron 35.0%
ACACCTTCTCAAATTCTCAT+TGG + chr8.2:62561308-62561327 MS.gene23186:CDS 35.0%
ACATGGATCTCAATACAGAA+AGG + chr8.2:62563200-62563219 MS.gene23186:CDS 35.0%
ACGGAGAGAATATTGATCAA+GGG - chr8.2:62562892-62562911 None:intergenic 35.0%
AGAACACATGAGAAGAATTG+TGG + chr8.2:62563435-62563454 MS.gene23186:CDS 35.0%
ATGGATCTCAATACAGAAAG+GGG + chr8.2:62563202-62563221 MS.gene23186:CDS 35.0%
CAACAGATACAACAATCTTC+AGG + chr8.2:62561370-62561389 MS.gene23186:CDS 35.0%
CAACGTCATATAATTTGGGA+CGG - chr8.2:62562911-62562930 None:intergenic 35.0%
CATGGATCTCAATACAGAAA+GGG + chr8.2:62563201-62563220 MS.gene23186:CDS 35.0%
CCCAAATTATATGACGTTGT+GGG + chr8.2:62562912-62562931 MS.gene23186:intron 35.0%
CCCACAACGTCATATAATTT+GGG - chr8.2:62562915-62562934 None:intergenic 35.0%
TCAGAAATTGAACATGATGG+TGG + chr8.2:62563588-62563607 MS.gene23186:CDS 35.0%
TCCCAAATTATATGACGTTG+TGG + chr8.2:62562911-62562930 MS.gene23186:intron 35.0%
TGCAAGAAGAAGATGAAGTA+GGG + chr8.2:62563565-62563584 MS.gene23186:CDS 35.0%
TTGCAAGAAGAAGATGAAGT+AGG + chr8.2:62563564-62563583 MS.gene23186:CDS 35.0%
! ATGAGAATTTGAGAAGGTGT+TGG - chr8.2:62561308-62561327 None:intergenic 35.0%
! GATTTTCAGATGCATATGTG+GGG + chr8.2:62563177-62563196 MS.gene23186:intron 35.0%
! GGATTTTCAGATGCATATGT+GGG + chr8.2:62563176-62563195 MS.gene23186:intron 35.0%
! TGGATTTTCAGATGCATATG+TGG + chr8.2:62563175-62563194 MS.gene23186:intron 35.0%
! TGTGCCTGTCTTCAATTTTA+TGG + chr8.2:62562197-62562216 MS.gene23186:intron 35.0%
!! TGTGATCCTTTTAGAGAATC+TGG - chr8.2:62563228-62563247 None:intergenic 35.0%
!!! AAACTATGCTTTTGAGGTGT+TGG + chr8.2:62561407-62561426 MS.gene23186:intron 35.0%
!!! AACCAAGTATTTTTGGCACA+AGG - chr8.2:62562171-62562190 None:intergenic 35.0%
!!! ACATGGTTTTAGATGCAGTT+AGG - chr8.2:62561464-62561483 None:intergenic 35.0%
!!! TTGAAAGTTTTAGAGCACAC+AGG - chr8.2:62561353-62561372 None:intergenic 35.0%
AAAGCCTTTGGTTATGGTCA+TGG + chr8.2:62563522-62563541 MS.gene23186:CDS 40.0%
AACTCGACACAGTACTATTG+AGG + chr8.2:62562682-62562701 MS.gene23186:intron 40.0%
CATTTGCAGTGAAAGGTGAT+TGG + chr8.2:62563412-62563431 MS.gene23186:CDS 40.0%
CGGAGAGAATATTGATCAAG+GGG - chr8.2:62562891-62562910 None:intergenic 40.0%
GACGGAGAGAATATTGATCA+AGG - chr8.2:62562893-62562912 None:intergenic 40.0%
GATTTCTGAGCAACAACCTT+TGG + chr8.2:62561250-62561269 MS.gene23186:CDS 40.0%
GCCCACAACGTCATATAATT+TGG - chr8.2:62562916-62562935 None:intergenic 40.0%
GGACCAATGAGAATTTGAGA+AGG - chr8.2:62561314-62561333 None:intergenic 40.0%
GGCAAATCATTTGCAGTGAA+AGG + chr8.2:62563405-62563424 MS.gene23186:CDS 40.0%
GGGTCAGAAATTGAACATGA+TGG + chr8.2:62563585-62563604 MS.gene23186:CDS 40.0%
TCAATGTTATGCTTGCAACC+TGG - chr8.2:62563291-62563310 None:intergenic 40.0%
TGAACAACAAGGGTCAGTAT+TGG + chr8.2:62561279-62561298 MS.gene23186:CDS 40.0%
AAGGGGCCAGATTCTCTAAA+AGG + chr8.2:62563219-62563238 MS.gene23186:CDS 45.0%
ACAGGACAAGAGAATTGCGT+AGG - chr8.2:62561335-62561354 None:intergenic 45.0%
AGCACCATGACCATAACCAA+AGG - chr8.2:62563529-62563548 None:intergenic 45.0%
CACAACCAACAGCAATGCTA+AGG + chr8.2:62563244-62563263 MS.gene23186:CDS 45.0%
GGTTACTGCTAAGTGCTAAC+TGG + chr8.2:62562075-62562094 MS.gene23186:intron 45.0%
! GGTTATGGTCATGGTGCTTT+TGG + chr8.2:62563531-62563550 MS.gene23186:CDS 45.0%
! TCTTTGAGAGGCTTTGCTCT+AGG - chr8.2:62563318-62563337 None:intergenic 45.0%
!!! TGCTTTTGAGGTGTTGGCAA+TGG + chr8.2:62561413-62561432 MS.gene23186:intron 45.0%
!! TTATTTAATAGTTAATATAT+GGG + chr8.2:62563142-62563161 MS.gene23186:intron 5.0%
!! TTTATTTAATAGTTAATATA+TGG + chr8.2:62563141-62563160 MS.gene23186:intron 5.0%
CAGATGCATATGTGGGGACA+TGG + chr8.2:62563183-62563202 MS.gene23186:intron 50.0%
CCATGCTATTGTTGTGCACC+AGG + chr8.2:62563270-62563289 MS.gene23186:CDS 50.0%
CCTGGTGCACAACAATAGCA+TGG - chr8.2:62563273-62563292 None:intergenic 50.0%
! GGTAGCCTTAGCATTGCTGT+TGG - chr8.2:62563252-62563271 None:intergenic 50.0%
!! TGAGAGGCTTTGCTCTAGGA+TGG - chr8.2:62563314-62563333 None:intergenic 50.0%
CTGGTGCAGCACAGTGTTCT+AGG - chr8.2:62561768-62561787 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 62561200 62563623 62561200 ID=MS.gene23186
chr8.2 mRNA 62561200 62563623 62561200 ID=MS.gene23186.t1;Parent=MS.gene23186
chr8.2 exon 62561200 62561391 62561200 ID=MS.gene23186.t1.exon1;Parent=MS.gene23186.t1
chr8.2 CDS 62561200 62561391 62561200 ID=cds.MS.gene23186.t1;Parent=MS.gene23186.t1
chr8.2 exon 62563186 62563623 62563186 ID=MS.gene23186.t1.exon2;Parent=MS.gene23186.t1
chr8.2 CDS 62563186 62563623 62563186 ID=cds.MS.gene23186.t1;Parent=MS.gene23186.t1
Gene Sequence

>MS.gene23186

ATGGTCTCATCAAATTGCATAGAAATGGCTGAAAAAGAAGAAGTTAATATGATTTCTGAGCAACAACCTTTGGATAAATTGAACAACAAGGGTCAGTATTGGATTCCAACACCTTCTCAAATTCTCATTGGTCCTACGCAATTCTCTTGTCCTGTGTGCTCTAAAACTTTCAACAGATACAACAATCTTCAGGTATTTAGATCTTGAAAACTATGCTTTTGAGGTGTTGGCAATGGCATCACAACCTTATTGCCATATTTTCCTAACTGCATCTAAAACCATGTTTTTACTTCTGTTTTTTCTTGTTCTCTATATAATTTTTCCCCTAAATTTAGAAAAGAAAATGAAAAATTGCATTAATATGTGTATCAAGAATCATAATGGTTTTTTTGTCTATATCCCTTTTGCATGTTTTTTTTTTCCTTTTTGTTAGTTTCAAATAACTGAACTTGAGTACTATTTGATCTGATCAGACTCAGCAGTACACTTTAATTATGTTGTGTTTTCTATAAAAACAAGAAACTATTCTTTCAACAAGTCTCTCTTATTATTCTACTTTATGTTACCTAGAACACTGTGCTGCACCAGTACTGCAAATCAATGAAAACAATGTTTCTCTCACTGTTCAGATGTTTCTCACTTCAACTTTTTCAGAGCACTGCATATGTAGTAGAAAACATATCTATTGACTATTACTGATAAATATGTCTGTGATAAGATCATATATGGAACCTTTAAGCCATTCAAAATTATATATATATGGAACCTTCAATTGATGTCTCAGAAATAAAGAGCCAATAATTTAAGTATAATTAAGAAAAATTGTTTCATATCAGAACAAAATGAACCCTTTTGTAGAAATTGTTCTAAGTTTTGGTTACTGCTAAGTGCTAACTGGTCTTTATTTTATCATGGAAATTAGAAATATAATTTTTTTTGAAGAAGAAGAATTAGAAATATAATTAAAACCTTGTGCCAAAAATACTTGGTTTTCTATTGTGCCTGTCTTCAATTTTATGGTAATCATTAGATAGTTTCTTTATTTACTTTTTTTTTGGTAATGTTCTTTTGTTACTTTCTTTTGTTAGGGAAGTTTGAAACCACCATTCCTTGAATTTTTATATGCATCTTATGTGTGTGTTGAGTAAAACCTAAATATATACTCATCGTAATTTCTCTTTCTGCAAAGCTTTTGTTTTTGCATATTTTCCAAATTTGTACATTAGTTTCAAATGATGAACTTATTGTAGGTAAATTTGGCCCACTGTTGAATATACTATTCCATAACAGAAAATCACAAGTCTAAAGGTACAACACAAAATGTTTCAAGAGTACATATATATCATATATGCAGTCAGTAGTCACTACTCCCAACTTTCAATTCTAGTTCAATCATTTCTAGAAATAACAAAACTGGTGACAAGAAAATTAGAGAGATATTTCATTTTTGTGTCACTGGTTTTTGTGATTTTCTCTCTGCAGAACTCGACACAGTACTATTGAGGATAATTCTAAGCTCCCAATGATTTTGTCTAAATCACAGAAGTATAATCTGAAAAATAAATGCAAGACTGGATTTTAGATTTAAGTTAGTATTAATTGTCAACAAAATATTTAAGTCAGTTATTTCTTTTCTCTTCAAAAAAAAAAAACTAGTTATTCCATTTATATAGGTTCGGTTTTTGTCTCCCCTTGATCAATATTCTCTCCGTCCCAAATTATATGACGTTGTGGGCATTTCATATGTATTAAAAAATGTAATTAATTTTGTGTGGAAAAAAGATATTATGAGTTGTTTTACAAAATTGTTCTTAATAAATGATATATTTAAGAGAAATTAGGGACGGATAAAAAACAATCACTAATTTCATGATATAATTTTGCAACAAGAAAACTAAAGAGGGATTTTATTTTTTCACAAATTTTTTTCATTAATTTAATTTTATTTAATAGTTAATATATGGGTGCATCTTTATGGATTTTCAGATGCATATGTGGGGACATGGATCTCAATACAGAAAGGGGCCAGATTCTCTAAAAGGATCACAACCAACAGCAATGCTAAGGCTACCATGCTATTGTTGTGCACCAGGTTGCAAGCATAACATTGACCATCCTAGAGCAAAGCCTCTCAAAGATTTTAGAACTCTTCAAACACATTATAAGAGAAAGCATGGTATAAAACCTTATATGTGTAGAAAATGTGGCAAATCATTTGCAGTGAAAGGTGATTGGAGAACACATGAGAAGAATTGTGGCAAAATATGGTATTGTTTGTGTGGCTCAGATTTTAAACATAAAAGGTCTCTTAAAGACCATATTAAAGCCTTTGGTTATGGTCATGGTGCTTTTGGTATTGATTGCTTGCAAGAAGAAGATGAAGTAGGGTCAGAAATTGAACATGATGGTGGAAGTTCAATGTGA
Protein sequence

>MS.gene23186.t1

MVSSNCIEMAEKEEVNMISEQQPLDKLNNKGQYWIPTPSQILIGPTQFSCPVCSKTFNRYNNLQMHMWGHGSQYRKGPDSLKGSQPTAMLRLPCYCCAPGCKHNIDHPRAKPLKDFRTLQTHYKRKHGIKPYMCRKCGKSFAVKGDWRTHEKNCGKIWYCLCGSDFKHKRSLKDHIKAFGYGHGAFGIDCLQEEDEVGSEIEHDGGSSM