Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23198.t1 | ABD32483.2 | 82.4 | 296 | 50 | 1 | 1 | 294 | 34 | 329 | 7.90E-135 | 490 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23198.t1 | Q8L3W1 | 27.0 | 322 | 183 | 5 | 1 | 277 | 22 | 336 | 1.8e-23 | 111.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23198.t1 | Q2HSK0 | 82.4 | 296 | 50 | 1 | 1 | 294 | 34 | 329 | 5.7e-135 | 490.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene23198.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23198.t1 | MTR_7g050710 | 82.432 | 296 | 50 | 1 | 1 | 294 | 29 | 324 | 0.0 | 501 |
| MS.gene23198.t1 | MTR_7g050590 | 73.154 | 298 | 74 | 5 | 1 | 294 | 2 | 297 | 1.17e-150 | 424 |
| MS.gene23198.t1 | MTR_3g098790 | 71.429 | 294 | 78 | 1 | 1 | 294 | 29 | 316 | 9.94e-149 | 420 |
| MS.gene23198.t1 | MTR_7g050580 | 72.069 | 290 | 66 | 3 | 1 | 290 | 29 | 303 | 1.30e-137 | 391 |
| MS.gene23198.t1 | MTR_7g050560 | 68.990 | 287 | 72 | 4 | 1 | 286 | 29 | 299 | 4.66e-133 | 380 |
| MS.gene23198.t1 | MTR_7g050720 | 58.904 | 292 | 107 | 7 | 1 | 279 | 26 | 317 | 1.18e-104 | 308 |
| MS.gene23198.t1 | MTR_1g108780 | 36.207 | 290 | 160 | 6 | 1 | 277 | 13 | 290 | 5.17e-50 | 172 |
| MS.gene23198.t1 | MTR_8g103940 | 37.627 | 295 | 148 | 8 | 1 | 277 | 55 | 331 | 1.47e-49 | 171 |
| MS.gene23198.t1 | MTR_1g035460 | 34.680 | 297 | 163 | 8 | 1 | 277 | 2 | 287 | 2.09e-45 | 158 |
| MS.gene23198.t1 | MTR_5g044670 | 33.445 | 299 | 174 | 9 | 1 | 290 | 32 | 314 | 4.28e-39 | 140 |
| MS.gene23198.t1 | MTR_3g061370 | 32.867 | 286 | 155 | 10 | 1 | 276 | 23 | 281 | 1.30e-37 | 135 |
| MS.gene23198.t1 | MTR_3g061350 | 32.394 | 284 | 159 | 10 | 1 | 276 | 26 | 284 | 5.45e-35 | 128 |
| MS.gene23198.t1 | MTR_3g061340 | 30.796 | 289 | 147 | 9 | 1 | 276 | 26 | 274 | 2.36e-34 | 126 |
| MS.gene23198.t1 | MTR_3g061320 | 30.420 | 286 | 157 | 10 | 1 | 276 | 26 | 279 | 3.00e-34 | 125 |
| MS.gene23198.t1 | MTR_3g061310 | 29.329 | 283 | 170 | 8 | 1 | 276 | 26 | 285 | 2.01e-33 | 124 |
| MS.gene23198.t1 | MTR_1g035640 | 32.313 | 294 | 168 | 9 | 1 | 287 | 21 | 290 | 2.08e-32 | 124 |
| MS.gene23198.t1 | MTR_7g050640 | 67.949 | 78 | 25 | 0 | 1 | 78 | 29 | 106 | 4.55e-32 | 115 |
| MS.gene23198.t1 | MTR_1g035620 | 30.435 | 276 | 168 | 7 | 1 | 275 | 25 | 277 | 2.73e-29 | 115 |
| MS.gene23198.t1 | MTR_3g061330 | 54.762 | 84 | 38 | 0 | 1 | 84 | 26 | 109 | 3.59e-28 | 109 |
| MS.gene23198.t1 | MTR_6g043890 | 32.491 | 277 | 157 | 10 | 1 | 263 | 31 | 291 | 1.23e-27 | 109 |
| MS.gene23198.t1 | MTR_1g050845 | 32.867 | 286 | 136 | 11 | 1 | 275 | 25 | 265 | 1.78e-27 | 112 |
| MS.gene23198.t1 | MTR_3g061290 | 54.762 | 84 | 38 | 0 | 1 | 84 | 26 | 109 | 3.20e-27 | 105 |
| MS.gene23198.t1 | MTR_1g035570 | 29.758 | 289 | 169 | 6 | 1 | 277 | 21 | 287 | 9.19e-27 | 108 |
| MS.gene23198.t1 | MTR_3g005490 | 25.347 | 288 | 145 | 5 | 1 | 280 | 37 | 262 | 8.31e-26 | 103 |
| MS.gene23198.t1 | MTR_5g070440 | 27.083 | 288 | 149 | 7 | 1 | 280 | 37 | 271 | 7.01e-25 | 100 |
| MS.gene23198.t1 | MTR_3g005480 | 26.298 | 289 | 142 | 7 | 1 | 280 | 37 | 263 | 9.37e-25 | 100 |
| MS.gene23198.t1 | MTR_1g021360 | 28.058 | 278 | 178 | 6 | 1 | 269 | 198 | 462 | 2.07e-24 | 102 |
| MS.gene23198.t1 | MTR_1g021360 | 26.038 | 265 | 147 | 7 | 1 | 262 | 41 | 259 | 1.20e-13 | 71.2 |
| MS.gene23198.t1 | MTR_3g005420 | 28.214 | 280 | 156 | 9 | 1 | 280 | 305 | 539 | 4.41e-23 | 99.4 |
| MS.gene23198.t1 | MTR_3g005420 | 24.060 | 266 | 132 | 8 | 1 | 264 | 56 | 253 | 1.15e-13 | 71.2 |
| MS.gene23198.t1 | MTR_4g119990 | 30.375 | 293 | 175 | 10 | 1 | 276 | 31 | 311 | 1.44e-22 | 96.7 |
| MS.gene23198.t1 | MTR_1g021400 | 25.938 | 320 | 177 | 9 | 1 | 276 | 46 | 349 | 3.11e-22 | 95.5 |
| MS.gene23198.t1 | MTR_1g021270 | 26.347 | 334 | 191 | 9 | 1 | 286 | 31 | 357 | 1.57e-20 | 92.0 |
| MS.gene23198.t1 | MTR_1g021410 | 23.438 | 320 | 186 | 7 | 1 | 276 | 38 | 342 | 2.09e-20 | 90.1 |
| MS.gene23198.t1 | MTR_1g021330 | 24.841 | 314 | 188 | 5 | 1 | 269 | 42 | 352 | 9.56e-20 | 88.6 |
| MS.gene23198.t1 | MTR_1g021380 | 24.172 | 302 | 192 | 7 | 1 | 276 | 37 | 327 | 2.97e-19 | 87.0 |
| MS.gene23198.t1 | MTR_3g005460 | 25.517 | 290 | 159 | 9 | 1 | 280 | 278 | 520 | 3.35e-19 | 87.8 |
| MS.gene23198.t1 | MTR_3g005460 | 32.323 | 99 | 63 | 1 | 1 | 99 | 41 | 135 | 5.03e-14 | 72.4 |
| MS.gene23198.t1 | MTR_3g061220 | 44.048 | 84 | 34 | 1 | 1 | 84 | 26 | 96 | 3.18e-18 | 79.0 |
| MS.gene23198.t1 | MTR_1g034240 | 40.964 | 83 | 49 | 0 | 1 | 83 | 23 | 105 | 2.09e-17 | 82.4 |
| MS.gene23198.t1 | MTR_1g034240 | 32.090 | 134 | 85 | 2 | 150 | 283 | 271 | 398 | 9.55e-15 | 74.3 |
| MS.gene23198.t1 | MTR_1g021435 | 24.695 | 328 | 181 | 9 | 1 | 275 | 38 | 352 | 4.37e-17 | 80.9 |
| MS.gene23198.t1 | MTR_4g068320 | 39.759 | 83 | 50 | 0 | 1 | 83 | 22 | 104 | 5.67e-17 | 80.9 |
| MS.gene23198.t1 | MTR_4g068320 | 33.083 | 133 | 83 | 2 | 150 | 282 | 267 | 393 | 5.29e-15 | 75.1 |
| MS.gene23198.t1 | MTR_1g035520 | 28.431 | 306 | 177 | 11 | 1 | 275 | 88 | 382 | 9.51e-17 | 80.1 |
| MS.gene23198.t1 | MTR_3g005495 | 27.239 | 268 | 134 | 8 | 1 | 268 | 259 | 465 | 1.63e-16 | 79.7 |
| MS.gene23198.t1 | MTR_3g005495 | 32.323 | 99 | 63 | 1 | 1 | 99 | 29 | 123 | 8.51e-15 | 74.7 |
| MS.gene23198.t1 | MTR_3g005440 | 29.577 | 142 | 95 | 2 | 1 | 140 | 36 | 174 | 1.89e-15 | 76.6 |
| MS.gene23198.t1 | MTR_3g005440 | 34.694 | 98 | 64 | 0 | 4 | 101 | 261 | 358 | 1.41e-12 | 67.8 |
| MS.gene23198.t1 | MTR_1g035650 | 31.818 | 198 | 110 | 8 | 1 | 192 | 25 | 203 | 4.23e-15 | 72.8 |
| MS.gene23198.t1 | MTR_1g034210 | 38.372 | 86 | 53 | 0 | 1 | 86 | 23 | 108 | 2.61e-14 | 72.4 |
| MS.gene23198.t1 | MTR_1g034210 | 38.372 | 86 | 53 | 0 | 1 | 86 | 23 | 108 | 3.35e-14 | 72.4 |
| MS.gene23198.t1 | MTR_1g035480 | 42.105 | 95 | 52 | 2 | 1 | 95 | 33 | 124 | 4.11e-14 | 69.7 |
| MS.gene23198.t1 | MTR_1g021350 | 27.645 | 293 | 174 | 12 | 1 | 269 | 37 | 315 | 1.33e-13 | 70.5 |
| MS.gene23198.t1 | MTR_3g005420 | 24.060 | 266 | 132 | 8 | 1 | 264 | 37 | 234 | 1.82e-13 | 70.9 |
| MS.gene23198.t1 | MTR_1g035490 | 37.500 | 120 | 68 | 4 | 160 | 277 | 82 | 196 | 3.01e-12 | 66.6 |
| MS.gene23198.t1 | MTR_1g021440 | 37.838 | 74 | 46 | 0 | 1 | 74 | 38 | 111 | 5.03e-12 | 65.5 |
| MS.gene23198.t1 | MTR_1g021440 | 37.838 | 74 | 46 | 0 | 1 | 74 | 38 | 111 | 6.18e-12 | 65.5 |
| MS.gene23198.t1 | MTR_1g021440 | 37.838 | 74 | 46 | 0 | 1 | 74 | 38 | 111 | 7.87e-12 | 65.5 |
| MS.gene23198.t1 | MTR_1g021290 | 30.392 | 102 | 68 | 1 | 1 | 99 | 171 | 272 | 7.97e-12 | 65.5 |
| MS.gene23198.t1 | MTR_1g021440 | 37.838 | 74 | 46 | 0 | 1 | 74 | 38 | 111 | 9.16e-12 | 65.5 |
| MS.gene23198.t1 | MTR_1g021320 | 37.838 | 74 | 46 | 0 | 1 | 74 | 41 | 114 | 3.33e-11 | 64.3 |
| MS.gene23198.t1 | MTR_1g021320 | 36.471 | 85 | 53 | 1 | 1 | 84 | 198 | 282 | 4.22e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23198.t1 | AT3G18990 | 27.077 | 325 | 185 | 5 | 1 | 280 | 22 | 339 | 1.29e-30 | 118 |
| MS.gene23198.t1 | AT3G18990 | 27.019 | 322 | 183 | 5 | 1 | 277 | 22 | 336 | 2.14e-30 | 117 |
| MS.gene23198.t1 | AT4G33280 | 28.803 | 309 | 176 | 13 | 1 | 285 | 39 | 327 | 1.47e-21 | 93.2 |
| MS.gene23198.t1 | AT4G01580 | 44.318 | 88 | 49 | 0 | 1 | 88 | 46 | 133 | 1.82e-18 | 81.6 |
| MS.gene23198.t1 | AT1G49475 | 45.882 | 85 | 45 | 1 | 1 | 85 | 50 | 133 | 2.71e-18 | 81.3 |
| MS.gene23198.t1 | AT3G18960 | 43.182 | 88 | 50 | 0 | 1 | 88 | 46 | 133 | 1.61e-17 | 79.3 |
| MS.gene23198.t1 | AT3G18960 | 43.182 | 88 | 50 | 0 | 1 | 88 | 9 | 96 | 1.85e-17 | 78.6 |
| MS.gene23198.t1 | AT3G18960 | 43.182 | 88 | 50 | 0 | 1 | 88 | 46 | 133 | 1.88e-17 | 79.3 |
| MS.gene23198.t1 | AT4G33280 | 37.500 | 80 | 49 | 1 | 1 | 79 | 39 | 118 | 5.26e-11 | 62.4 |
| MS.gene23198.t1 | AT4G33280 | 37.500 | 80 | 49 | 1 | 1 | 79 | 39 | 118 | 9.58e-11 | 62.4 |
Find 49 sgRNAs with CRISPR-Local
Find 88 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAAAATGGAAATTAAATT+TGG | 0.157556 | 7.2:+52044854 | MS.gene23198:CDS |
| AAAGATTTGTACCTCAAATT+TGG | 0.180864 | 7.2:-52044982 | None:intergenic |
| TTTCACCAACAATGTGAAAT+TGG | 0.216826 | 7.2:+52045143 | MS.gene23198:CDS |
| AAATTTGAGGTACAAATCTT+TGG | 0.253897 | 7.2:+52044984 | MS.gene23198:CDS |
| TGCTTCCAATTTCACATTGT+TGG | 0.309809 | 7.2:-52045148 | None:intergenic |
| GTCTTTAGACATATAGCTTT+TGG | 0.314158 | 7.2:-52044822 | None:intergenic |
| AGACTCCAAATGGTGCAAAA+TGG | 0.337543 | 7.2:+52044841 | MS.gene23198:CDS |
| GAGAGGAGATATTCAACTTC+AGG | 0.365011 | 7.2:+52046132 | MS.gene23198:CDS |
| AGGTGTTGAATGGGAGAGTT+TGG | 0.366825 | 7.2:+52046152 | MS.gene23198:CDS |
| CGTTGAACACCACTTTCTTC+CGG | 0.401759 | 7.2:+52045602 | MS.gene23198:CDS |
| AAAAGAGTGATGGCAAGATA+TGG | 0.414999 | 7.2:+52044877 | MS.gene23198:CDS |
| AATCTTTGGAAAGAGTGCTT+TGG | 0.429279 | 7.2:+52044998 | MS.gene23198:CDS |
| ATTCAACTTCAGGTGTTGAA+TGG | 0.430462 | 7.2:+52046142 | MS.gene23198:CDS |
| GATGATGCCAAGAAAGTTTG+TGG | 0.433802 | 7.2:+52044779 | None:intergenic |
| GGTCTGCTAGGTATTCTATC+AGG | 0.438342 | 7.2:+52046173 | MS.gene23198:CDS |
| TCCATCCTTTGTTGTTGTCA+TGG | 0.443657 | 7.2:+52045569 | MS.gene23198:CDS |
| CCATCCTTTGTTGTTGTCAT+GGG | 0.446533 | 7.2:+52045570 | MS.gene23198:CDS |
| TTCAACTTCAGGTGTTGAAT+GGG | 0.455910 | 7.2:+52046143 | MS.gene23198:CDS |
| AGATATGGTTTGAGAAGGGT+TGG | 0.481735 | 7.2:+52044892 | MS.gene23198:CDS |
| TCTATCAGGATGTGCGCTAA+AGG | 0.492186 | 7.2:+52046187 | MS.gene23198:CDS |
| AAGGACAATAACTTGAAAGT+TGG | 0.499244 | 7.2:+52046250 | MS.gene23198:CDS |
| ATGGGAGAGTTTGGTCTGCT+AGG | 0.505527 | 7.2:+52046161 | MS.gene23198:CDS |
| ATTGTTTAACATTTCAGAGT+AGG | 0.512018 | 7.2:+52046359 | MS.gene23198:CDS |
| ATATGTCTAAAGACTCCAAA+TGG | 0.517821 | 7.2:+52044831 | MS.gene23198:CDS |
| ACATTGTTGGTGAAATTCAA+AGG | 0.523282 | 7.2:-52045135 | None:intergenic |
| TTTGCAGAGCATCACTCTCT+AGG | 0.527747 | 7.2:+52044921 | MS.gene23198:CDS |
| TTAAATTTGGAAAAGAGTGA+TGG | 0.536531 | 7.2:+52044867 | MS.gene23198:CDS |
| CAAAAGAGTTGAAGCTCGGA+AGG | 0.537314 | 7.2:+52045037 | MS.gene23198:CDS |
| TCTAAAGATATGAACAATGA+AGG | 0.545794 | 7.2:-52046314 | None:intergenic |
| TGGCAAGATATGGTTTGAGA+AGG | 0.555350 | 7.2:+52044887 | MS.gene23198:CDS |
| AAAACATGGAAAGTCGCAAA+AGG | 0.558949 | 7.2:+52045181 | MS.gene23198:CDS |
| CTAAAATTTGAACTCACAAG+TGG | 0.566527 | 7.2:+52046211 | MS.gene23198:CDS |
| TGAACTCACAAGTGGATGGA+AGG | 0.567593 | 7.2:+52046219 | MS.gene23198:CDS |
| CCCATGACAACAACAAAGGA+TGG | 0.571041 | 7.2:-52045570 | None:intergenic |
| CTATCAAAAGAGTTGAAGCT+CGG | 0.573122 | 7.2:+52045033 | MS.gene23198:CDS |
| TGCAGCTTACCGGAAGAAAG+TGG | 0.589285 | 7.2:-52045611 | None:intergenic |
| GAGCATCACTCTCTAGGTCA+TGG | 0.595626 | 7.2:+52044927 | MS.gene23198:CDS |
| AATTTGAACTCACAAGTGGA+TGG | 0.599548 | 7.2:+52046215 | MS.gene23198:CDS |
| TTTGATTTGAATAAGAAGAG+AGG | 0.602796 | 7.2:+52046115 | MS.gene23198:CDS |
| GGCAAGATATGGTTTGAGAA+GGG | 0.606783 | 7.2:+52044888 | MS.gene23198:CDS |
| ACATGGAAAGTCGCAAAAGG+TGG | 0.608889 | 7.2:+52045184 | MS.gene23198:CDS |
| AGCATTAGTTGTGTAAAACA+TGG | 0.615182 | 7.2:+52045167 | MS.gene23198:CDS |
| GAAGCTCGGAAGGTCTCCAA+TGG | 0.627258 | 7.2:+52045047 | MS.gene23198:CDS |
| CAAGAAAATAAACCTCCGAA+TGG | 0.639626 | 7.2:+52045071 | MS.gene23198:CDS |
| TGGATGGAAGGCATTTGCAA+AGG | 0.640290 | 7.2:+52046231 | MS.gene23198:CDS |
| TGTGTCTTACAAAACAAGGA+TGG | 0.644962 | 7.2:-52046091 | None:intergenic |
| CAAATTGATAGAATGTCCAA+AGG | 0.647085 | 7.2:+52045215 | MS.gene23198:CDS |
| AAAGTGTGTCTTACAAAACA+AGG | 0.647663 | 7.2:-52046095 | None:intergenic |
| TGCACCCATGACAACAACAA+AGG | 0.693553 | 7.2:-52045574 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTAACATTTTTATTTTC+TGG | + | chr7.2:52045321-52045340 | MS.gene23198:intron | 10.0% |
| !! | ATGAATGAAAAAAAAAACAA+GGG | - | chr7.2:52046036-52046055 | None:intergenic | 15.0% |
| !! | TTAGAATAACTTTAATTAGT+TGG | + | chr7.2:52045394-52045413 | MS.gene23198:intron | 15.0% |
| !!! | GGTGTTTTTATTTTTATTTT+TGG | - | chr7.2:52046014-52046033 | None:intergenic | 15.0% |
| !! | GATGAATGAAAAAAAAAACA+AGG | - | chr7.2:52046037-52046056 | None:intergenic | 20.0% |
| !! | TGAATGAAAAAAAAAACAAG+GGG | - | chr7.2:52046035-52046054 | None:intergenic | 20.0% |
| !! | TGCAAAATGGAAATTAAATT+TGG | + | chr7.2:52044854-52044873 | MS.gene23198:CDS | 20.0% |
| !!! | AAAAACCTTTTTATTGTTGT+TGG | - | chr7.2:52045672-52045691 | None:intergenic | 20.0% |
| ! | AAAGATTTGTACCTCAAATT+TGG | - | chr7.2:52044985-52045004 | None:intergenic | 25.0% |
| ! | AGAAAGTTTGTGGAAAAATA+TGG | + | chr7.2:52044789-52044808 | MS.gene23198:CDS | 25.0% |
| ! | ATTGTTTAACATTTCAGAGT+AGG | + | chr7.2:52046359-52046378 | MS.gene23198:CDS | 25.0% |
| ! | GGTTGCTAAAAATTTAAACA+TGG | - | chr7.2:52045431-52045450 | None:intergenic | 25.0% |
| ! | GTTAAAAAGATCATATCTAG+TGG | - | chr7.2:52045696-52045715 | None:intergenic | 25.0% |
| ! | TCTAAAGATATGAACAATGA+AGG | - | chr7.2:52046317-52046336 | None:intergenic | 25.0% |
| ! | TGAAAAAACTTCCAAATTTG+AGG | + | chr7.2:52044971-52044990 | MS.gene23198:CDS | 25.0% |
| ! | TTAAATTTGGAAAAGAGTGA+TGG | + | chr7.2:52044867-52044886 | MS.gene23198:CDS | 25.0% |
| !! | AAATTTGAGGTACAAATCTT+TGG | + | chr7.2:52044984-52045003 | MS.gene23198:CDS | 25.0% |
| !! | CATTTCCATTTTCTATTGTT+TGG | + | chr7.2:52046059-52046078 | MS.gene23198:intron | 25.0% |
| !! | TATTTTTCCACAAACTTTCT+TGG | - | chr7.2:52044789-52044808 | None:intergenic | 25.0% |
| !! | TGCAAAATTGGAACATTTTA+AGG | - | chr7.2:52045478-52045497 | None:intergenic | 25.0% |
| !! | TTAAAATGTTCCAATTTTGC+AGG | + | chr7.2:52045477-52045496 | MS.gene23198:intron | 25.0% |
| !!! | TTTATTTTCTGGAGTGTTAA+GGG | + | chr7.2:52045332-52045351 | MS.gene23198:intron | 25.0% |
| !!! | TTTGATTTGAATAAGAAGAG+AGG | + | chr7.2:52046115-52046134 | MS.gene23198:CDS | 25.0% |
| !!! | TTTTATTTTCTGGAGTGTTA+AGG | + | chr7.2:52045331-52045350 | MS.gene23198:intron | 25.0% |
| AAAGTGTGTCTTACAAAACA+AGG | - | chr7.2:52046098-52046117 | None:intergenic | 30.0% | |
| AAGGACAATAACTTGAAAGT+TGG | + | chr7.2:52046250-52046269 | MS.gene23198:CDS | 30.0% | |
| AGCATTAGTTGTGTAAAACA+TGG | + | chr7.2:52045167-52045186 | MS.gene23198:CDS | 30.0% | |
| AGTAGCCAACAACAATAAAA+AGG | + | chr7.2:52045664-52045683 | MS.gene23198:intron | 30.0% | |
| ATATGTCTAAAGACTCCAAA+TGG | + | chr7.2:52044831-52044850 | MS.gene23198:CDS | 30.0% | |
| ATATTTGACGATAATCTTCG+AGG | - | chr7.2:52045452-52045471 | None:intergenic | 30.0% | |
| CAAATTGATAGAATGTCCAA+AGG | + | chr7.2:52045215-52045234 | MS.gene23198:CDS | 30.0% | |
| CATATCTAAAAAGCAGAAGA+TGG | - | chr7.2:52044953-52044972 | None:intergenic | 30.0% | |
| CATTATGTAGCTAATTGTCA+CGG | + | chr7.2:52045860-52045879 | MS.gene23198:intron | 30.0% | |
| CTAAAATTTGAACTCACAAG+TGG | + | chr7.2:52046211-52046230 | MS.gene23198:CDS | 30.0% | |
| GACATAAAATCGTATACCTT+TGG | - | chr7.2:52045234-52045253 | None:intergenic | 30.0% | |
| GTAATCACTTGTGTCAATAT+CGG | - | chr7.2:52045769-52045788 | None:intergenic | 30.0% | |
| TGACAATTAGCTACATAATG+TGG | - | chr7.2:52045860-52045879 | None:intergenic | 30.0% | |
| TTCTGCCAAACAATAGAAAA+TGG | - | chr7.2:52046067-52046086 | None:intergenic | 30.0% | |
| TTTCACCAACAATGTGAAAT+TGG | + | chr7.2:52045143-52045162 | MS.gene23198:CDS | 30.0% | |
| TTTGTGGAAAAATATGGAAG+AGG | + | chr7.2:52044795-52044814 | MS.gene23198:CDS | 30.0% | |
| ! | AATTTCCATTTTGCACCATT+TGG | - | chr7.2:52044849-52044868 | None:intergenic | 30.0% |
| ! | ACATTGTTGGTGAAATTCAA+AGG | - | chr7.2:52045138-52045157 | None:intergenic | 30.0% |
| ! | GTCTTTAGACATATAGCTTT+TGG | - | chr7.2:52044825-52044844 | None:intergenic | 30.0% |
| !! | AGGTTTATTTTCTTGACCAT+TGG | - | chr7.2:52045066-52045085 | None:intergenic | 30.0% |
| !! | TTTTTGGTGATCAAAAGACT+GGG | - | chr7.2:52045998-52046017 | None:intergenic | 30.0% |
| !!! | ATTTTTGGTGATCAAAAGAC+TGG | - | chr7.2:52045999-52046018 | None:intergenic | 30.0% |
| AAAACATGGAAAGTCGCAAA+AGG | + | chr7.2:52045181-52045200 | MS.gene23198:CDS | 35.0% | |
| AAAAGAGTGATGGCAAGATA+TGG | + | chr7.2:52044877-52044896 | MS.gene23198:CDS | 35.0% | |
| AATGTTTCTTTGCAGCTTAC+CGG | - | chr7.2:52045624-52045643 | None:intergenic | 35.0% | |
| AATTTGAACTCACAAGTGGA+TGG | + | chr7.2:52046215-52046234 | MS.gene23198:CDS | 35.0% | |
| CAAGAAAATAAACCTCCGAA+TGG | + | chr7.2:52045071-52045090 | MS.gene23198:CDS | 35.0% | |
| CTATCAAAAGAGTTGAAGCT+CGG | + | chr7.2:52045033-52045052 | MS.gene23198:CDS | 35.0% | |
| GTAAGCTGCAAAGAAACATT+TGG | + | chr7.2:52045624-52045643 | MS.gene23198:intron | 35.0% | |
| TATGTCTTCTTCATTGTGTC+AGG | + | chr7.2:52045248-52045267 | MS.gene23198:intron | 35.0% | |
| TGCTTCCAATTTCACATTGT+TGG | - | chr7.2:52045151-52045170 | None:intergenic | 35.0% | |
| TGTGTCTTACAAAACAAGGA+TGG | - | chr7.2:52046094-52046113 | None:intergenic | 35.0% | |
| !! | AATCTTTGGAAAGAGTGCTT+TGG | + | chr7.2:52044998-52045017 | MS.gene23198:CDS | 35.0% |
| !! | ATTCAACTTCAGGTGTTGAA+TGG | + | chr7.2:52046142-52046161 | MS.gene23198:CDS | 35.0% |
| !! | CACTTGTTTTCCTGCAAAAT+TGG | - | chr7.2:52045490-52045509 | None:intergenic | 35.0% |
| !! | TTCAACTTCAGGTGTTGAAT+GGG | + | chr7.2:52046143-52046162 | MS.gene23198:CDS | 35.0% |
| ACTTGTGTCAATATCGGACA+CGG | - | chr7.2:52045763-52045782 | None:intergenic | 40.0% | |
| AGACTCCAAATGGTGCAAAA+TGG | + | chr7.2:52044841-52044860 | MS.gene23198:CDS | 40.0% | |
| AGATATGGTTTGAGAAGGGT+TGG | + | chr7.2:52044892-52044911 | MS.gene23198:CDS | 40.0% | |
| GAGAGGAGATATTCAACTTC+AGG | + | chr7.2:52046132-52046151 | MS.gene23198:CDS | 40.0% | |
| GGCAAGATATGGTTTGAGAA+GGG | + | chr7.2:52044888-52044907 | MS.gene23198:CDS | 40.0% | |
| TGGCAAGATATGGTTTGAGA+AGG | + | chr7.2:52044887-52044906 | MS.gene23198:CDS | 40.0% | |
| ! | GCTCTACGATTTTCACCATT+CGG | - | chr7.2:52045089-52045108 | None:intergenic | 40.0% |
| !! | CCATCCTTTGTTGTTGTCAT+GGG | + | chr7.2:52045570-52045589 | MS.gene23198:CDS | 40.0% |
| !! | TACATAATGTGGCACTGACA+CGG | - | chr7.2:52045849-52045868 | None:intergenic | 40.0% |
| !! | TCCATCCTTTGTTGTTGTCA+TGG | + | chr7.2:52045569-52045588 | MS.gene23198:CDS | 40.0% |
| ACACGGACATGTCTCTAACA+AGG | - | chr7.2:52045746-52045765 | None:intergenic | 45.0% | |
| ACATGGAAAGTCGCAAAAGG+TGG | + | chr7.2:52045184-52045203 | MS.gene23198:CDS | 45.0% | |
| CAAAAGAGTTGAAGCTCGGA+AGG | + | chr7.2:52045037-52045056 | MS.gene23198:CDS | 45.0% | |
| CCCATGACAACAACAAAGGA+TGG | - | chr7.2:52045573-52045592 | None:intergenic | 45.0% | |
| CGTTGAACACCACTTTCTTC+CGG | + | chr7.2:52045602-52045621 | MS.gene23198:CDS | 45.0% | |
| GGTCTGCTAGGTATTCTATC+AGG | + | chr7.2:52046173-52046192 | MS.gene23198:CDS | 45.0% | |
| TCTATCAGGATGTGCGCTAA+AGG | + | chr7.2:52046187-52046206 | MS.gene23198:CDS | 45.0% | |
| TGAACTCACAAGTGGATGGA+AGG | + | chr7.2:52046219-52046238 | MS.gene23198:CDS | 45.0% | |
| TGCACCCATGACAACAACAA+AGG | - | chr7.2:52045577-52045596 | None:intergenic | 45.0% | |
| ! | CTACGATTTTCACCATTCGG+AGG | - | chr7.2:52045086-52045105 | None:intergenic | 45.0% |
| ! | TTTGCAGAGCATCACTCTCT+AGG | + | chr7.2:52044921-52044940 | MS.gene23198:CDS | 45.0% |
| !! | AGGTGTTGAATGGGAGAGTT+TGG | + | chr7.2:52046152-52046171 | MS.gene23198:CDS | 45.0% |
| !! | TGGATGGAAGGCATTTGCAA+AGG | + | chr7.2:52046231-52046250 | MS.gene23198:CDS | 45.0% |
| !! | TTAATTAATTGAAATATTAT+AGG | + | chr7.2:52045933-52045952 | MS.gene23198:intron | 5.0% |
| ATGGGAGAGTTTGGTCTGCT+AGG | + | chr7.2:52046161-52046180 | MS.gene23198:CDS | 50.0% | |
| GAGCATCACTCTCTAGGTCA+TGG | + | chr7.2:52044927-52044946 | MS.gene23198:CDS | 50.0% | |
| TGCAGCTTACCGGAAGAAAG+TGG | - | chr7.2:52045614-52045633 | None:intergenic | 50.0% | |
| GAAGCTCGGAAGGTCTCCAA+TGG | + | chr7.2:52045047-52045066 | MS.gene23198:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 52044783 | 52046390 | 52044783 | ID=MS.gene23198 |
| chr7.2 | mRNA | 52044783 | 52046390 | 52044783 | ID=MS.gene23198.t1;Parent=MS.gene23198 |
| chr7.2 | exon | 52044783 | 52045236 | 52044783 | ID=MS.gene23198.t1.exon1;Parent=MS.gene23198.t1 |
| chr7.2 | CDS | 52044783 | 52045236 | 52044783 | ID=cds.MS.gene23198.t1;Parent=MS.gene23198.t1 |
| chr7.2 | exon | 52045499 | 52045623 | 52045499 | ID=MS.gene23198.t1.exon2;Parent=MS.gene23198.t1 |
| chr7.2 | CDS | 52045499 | 52045623 | 52045499 | ID=cds.MS.gene23198.t1;Parent=MS.gene23198.t1 |
| chr7.2 | exon | 52046085 | 52046390 | 52046085 | ID=MS.gene23198.t1.exon3;Parent=MS.gene23198.t1 |
| chr7.2 | CDS | 52046085 | 52046390 | 52046085 | ID=cds.MS.gene23198.t1;Parent=MS.gene23198.t1 |
| Gene Sequence |
| Protein sequence |
