Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23202.t1 | AES78894.2 | 89.8 | 295 | 24 | 1 | 1 | 289 | 25 | 319 | 1.60E-151 | 545.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23202.t1 | Q8L3W1 | 31.7 | 319 | 156 | 9 | 2 | 273 | 22 | 325 | 1.7e-29 | 131.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23202.t1 | G7KVW7 | 89.8 | 295 | 24 | 1 | 1 | 289 | 25 | 319 | 1.1e-151 | 545.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene23202.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23202.t1 | MTR_7g050720 | 89.831 | 295 | 24 | 1 | 1 | 289 | 25 | 319 | 0.0 | 548 |
| MS.gene23202.t1 | MTR_7g050590 | 62.630 | 289 | 99 | 6 | 1 | 287 | 1 | 282 | 4.70e-124 | 356 |
| MS.gene23202.t1 | MTR_3g098790 | 62.847 | 288 | 92 | 8 | 1 | 287 | 28 | 301 | 4.10e-114 | 332 |
| MS.gene23202.t1 | MTR_7g050710 | 59.028 | 288 | 109 | 7 | 2 | 287 | 29 | 309 | 9.80e-114 | 331 |
| MS.gene23202.t1 | MTR_7g050560 | 59.233 | 287 | 95 | 6 | 1 | 287 | 28 | 292 | 1.44e-113 | 330 |
| MS.gene23202.t1 | MTR_7g050580 | 55.052 | 287 | 107 | 8 | 1 | 287 | 28 | 292 | 5.48e-98 | 290 |
| MS.gene23202.t1 | MTR_1g035460 | 37.417 | 302 | 157 | 7 | 1 | 285 | 1 | 287 | 7.19e-52 | 175 |
| MS.gene23202.t1 | MTR_1g108780 | 35.880 | 301 | 153 | 9 | 2 | 285 | 13 | 290 | 2.62e-49 | 169 |
| MS.gene23202.t1 | MTR_8g103940 | 35.354 | 297 | 159 | 10 | 2 | 285 | 55 | 331 | 3.68e-44 | 157 |
| MS.gene23202.t1 | MTR_7g050640 | 77.907 | 86 | 19 | 0 | 1 | 86 | 28 | 113 | 1.07e-42 | 142 |
| MS.gene23202.t1 | MTR_5g044670 | 30.872 | 298 | 168 | 11 | 1 | 285 | 31 | 303 | 2.43e-33 | 124 |
| MS.gene23202.t1 | MTR_3g061320 | 31.690 | 284 | 163 | 11 | 2 | 284 | 26 | 279 | 4.45e-33 | 122 |
| MS.gene23202.t1 | MTR_3g061370 | 28.873 | 284 | 176 | 6 | 2 | 284 | 23 | 281 | 5.35e-30 | 114 |
| MS.gene23202.t1 | MTR_3g061350 | 27.181 | 298 | 163 | 8 | 2 | 284 | 26 | 284 | 6.79e-29 | 112 |
| MS.gene23202.t1 | MTR_3g061310 | 28.763 | 299 | 160 | 10 | 1 | 284 | 25 | 285 | 1.76e-28 | 110 |
| MS.gene23202.t1 | MTR_3g061330 | 29.268 | 246 | 130 | 5 | 1 | 226 | 25 | 246 | 2.60e-26 | 104 |
| MS.gene23202.t1 | MTR_1g035570 | 32.192 | 292 | 165 | 10 | 2 | 285 | 21 | 287 | 3.15e-26 | 107 |
| MS.gene23202.t1 | MTR_3g061340 | 29.655 | 290 | 156 | 9 | 2 | 284 | 26 | 274 | 3.63e-26 | 104 |
| MS.gene23202.t1 | MTR_1g035640 | 31.930 | 285 | 161 | 10 | 2 | 281 | 21 | 277 | 8.19e-26 | 106 |
| MS.gene23202.t1 | MTR_4g119990 | 29.553 | 291 | 187 | 6 | 2 | 284 | 31 | 311 | 1.36e-25 | 104 |
| MS.gene23202.t1 | MTR_6g043890 | 27.698 | 278 | 185 | 8 | 2 | 275 | 31 | 296 | 2.80e-23 | 97.8 |
| MS.gene23202.t1 | MTR_6g061070 | 29.276 | 304 | 176 | 12 | 1 | 280 | 33 | 321 | 1.96e-22 | 97.1 |
| MS.gene23202.t1 | MTR_5g070440 | 26.316 | 285 | 156 | 8 | 2 | 285 | 37 | 268 | 2.02e-22 | 94.4 |
| MS.gene23202.t1 | MTR_1g021360 | 27.181 | 298 | 181 | 7 | 2 | 286 | 198 | 472 | 5.32e-22 | 95.5 |
| MS.gene23202.t1 | MTR_1g021400 | 24.595 | 309 | 197 | 6 | 2 | 280 | 46 | 348 | 5.42e-22 | 94.7 |
| MS.gene23202.t1 | MTR_1g035620 | 29.758 | 289 | 154 | 12 | 2 | 278 | 25 | 276 | 7.55e-21 | 92.0 |
| MS.gene23202.t1 | MTR_1g021270 | 25.602 | 332 | 197 | 9 | 2 | 289 | 31 | 356 | 1.26e-20 | 92.0 |
| MS.gene23202.t1 | MTR_3g061290 | 48.193 | 83 | 43 | 0 | 2 | 84 | 26 | 108 | 1.28e-20 | 87.8 |
| MS.gene23202.t1 | MTR_1g021410 | 23.292 | 322 | 200 | 6 | 2 | 287 | 38 | 348 | 1.85e-20 | 90.5 |
| MS.gene23202.t1 | MTR_1g050845 | 30.142 | 282 | 152 | 10 | 2 | 279 | 25 | 265 | 4.09e-20 | 90.9 |
| MS.gene23202.t1 | MTR_1g021435 | 25.633 | 316 | 177 | 9 | 2 | 270 | 38 | 342 | 2.82e-19 | 87.0 |
| MS.gene23202.t1 | MTR_4g068320 | 46.067 | 89 | 46 | 1 | 2 | 88 | 22 | 110 | 1.09e-18 | 85.9 |
| MS.gene23202.t1 | MTR_4g068320 | 30.244 | 205 | 121 | 6 | 81 | 285 | 206 | 388 | 1.75e-16 | 79.3 |
| MS.gene23202.t1 | MTR_1g034240 | 40.909 | 110 | 62 | 2 | 2 | 110 | 23 | 130 | 4.00e-18 | 84.3 |
| MS.gene23202.t1 | MTR_1g034240 | 31.298 | 131 | 80 | 3 | 155 | 285 | 272 | 392 | 1.03e-13 | 71.2 |
| MS.gene23202.t1 | MTR_3g005460 | 25.676 | 296 | 159 | 8 | 2 | 286 | 278 | 523 | 4.72e-18 | 84.3 |
| MS.gene23202.t1 | MTR_3g005460 | 38.372 | 86 | 53 | 0 | 2 | 87 | 41 | 126 | 7.73e-16 | 77.8 |
| MS.gene23202.t1 | MTR_1g021350 | 26.490 | 302 | 198 | 6 | 2 | 289 | 37 | 328 | 1.92e-17 | 81.6 |
| MS.gene23202.t1 | MTR_3g005490 | 24.042 | 287 | 151 | 8 | 2 | 285 | 37 | 259 | 6.86e-17 | 79.0 |
| MS.gene23202.t1 | MTR_3g005495 | 38.372 | 86 | 53 | 0 | 2 | 87 | 29 | 114 | 1.25e-16 | 80.1 |
| MS.gene23202.t1 | MTR_3g005495 | 27.240 | 279 | 126 | 9 | 2 | 275 | 259 | 465 | 1.84e-16 | 79.3 |
| MS.gene23202.t1 | MTR_3g005480 | 23.333 | 270 | 146 | 8 | 2 | 270 | 37 | 246 | 1.70e-16 | 77.8 |
| MS.gene23202.t1 | MTR_3g005420 | 26.389 | 288 | 152 | 10 | 2 | 285 | 305 | 536 | 4.04e-16 | 78.6 |
| MS.gene23202.t1 | MTR_1g035480 | 38.318 | 107 | 63 | 2 | 1 | 107 | 32 | 135 | 9.04e-16 | 74.3 |
| MS.gene23202.t1 | MTR_3g005440 | 34.906 | 106 | 66 | 1 | 2 | 107 | 36 | 138 | 1.95e-15 | 76.3 |
| MS.gene23202.t1 | MTR_3g005440 | 34.167 | 120 | 78 | 1 | 2 | 121 | 258 | 376 | 2.73e-12 | 67.0 |
| MS.gene23202.t1 | MTR_1g033740 | 37.383 | 107 | 64 | 2 | 1 | 107 | 37 | 140 | 2.89e-15 | 73.2 |
| MS.gene23202.t1 | MTR_1g035520 | 24.765 | 319 | 186 | 11 | 1 | 288 | 87 | 382 | 4.80e-15 | 75.1 |
| MS.gene23202.t1 | MTR_3g061220 | 40.964 | 83 | 36 | 1 | 2 | 84 | 26 | 95 | 2.10e-14 | 68.6 |
| MS.gene23202.t1 | MTR_1g034210 | 43.038 | 79 | 45 | 0 | 2 | 80 | 23 | 101 | 4.26e-14 | 71.6 |
| MS.gene23202.t1 | MTR_1g034210 | 43.038 | 79 | 45 | 0 | 2 | 80 | 23 | 101 | 5.03e-14 | 72.0 |
| MS.gene23202.t1 | MTR_1g035510 | 38.318 | 107 | 63 | 2 | 1 | 107 | 1 | 104 | 8.12e-14 | 69.7 |
| MS.gene23202.t1 | MTR_1g035470 | 40.625 | 96 | 54 | 2 | 1 | 96 | 1 | 93 | 3.66e-13 | 65.9 |
| MS.gene23202.t1 | MTR_1g021320 | 29.940 | 167 | 96 | 4 | 2 | 167 | 198 | 344 | 1.12e-12 | 68.6 |
| MS.gene23202.t1 | MTR_1g021320 | 40.541 | 74 | 44 | 0 | 2 | 75 | 41 | 114 | 8.08e-11 | 62.8 |
| MS.gene23202.t1 | MTR_1g021440 | 41.333 | 75 | 44 | 0 | 2 | 76 | 38 | 112 | 2.77e-12 | 66.2 |
| MS.gene23202.t1 | MTR_1g021440 | 41.333 | 75 | 44 | 0 | 2 | 76 | 38 | 112 | 3.44e-12 | 65.9 |
| MS.gene23202.t1 | MTR_1g035500 | 34.579 | 107 | 67 | 2 | 1 | 107 | 40 | 143 | 4.90e-12 | 63.9 |
| MS.gene23202.t1 | MTR_1g021440 | 41.333 | 75 | 44 | 0 | 2 | 76 | 38 | 112 | 5.94e-12 | 65.9 |
| MS.gene23202.t1 | MTR_1g021440 | 41.333 | 75 | 44 | 0 | 2 | 76 | 38 | 112 | 6.43e-12 | 65.9 |
| MS.gene23202.t1 | MTR_1g035650 | 38.554 | 83 | 49 | 1 | 2 | 84 | 25 | 105 | 1.00e-11 | 63.5 |
| MS.gene23202.t1 | MTR_1g021290 | 29.464 | 112 | 76 | 1 | 2 | 110 | 171 | 282 | 2.12e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23202.t1 | AT3G18990 | 31.975 | 319 | 155 | 9 | 2 | 273 | 22 | 325 | 2.92e-36 | 132 |
| MS.gene23202.t1 | AT3G18990 | 31.975 | 319 | 155 | 9 | 2 | 273 | 22 | 325 | 8.66e-36 | 132 |
| MS.gene23202.t1 | AT4G33280 | 27.181 | 298 | 188 | 9 | 1 | 285 | 38 | 319 | 1.69e-20 | 90.1 |
| MS.gene23202.t1 | AT4G01580 | 36.508 | 126 | 76 | 1 | 2 | 127 | 46 | 167 | 2.87e-19 | 84.0 |
| MS.gene23202.t1 | AT3G18960 | 44.318 | 88 | 49 | 0 | 2 | 89 | 9 | 96 | 3.90e-19 | 83.2 |
| MS.gene23202.t1 | AT3G18960 | 44.318 | 88 | 49 | 0 | 2 | 89 | 46 | 133 | 4.49e-19 | 83.6 |
| MS.gene23202.t1 | AT3G18960 | 44.318 | 88 | 49 | 0 | 2 | 89 | 46 | 133 | 5.20e-19 | 83.6 |
| MS.gene23202.t1 | AT1G49475 | 41.304 | 92 | 53 | 1 | 2 | 93 | 50 | 140 | 1.78e-18 | 81.6 |
| MS.gene23202.t1 | AT1G49480 | 35.338 | 133 | 68 | 5 | 149 | 273 | 88 | 210 | 3.37e-14 | 70.9 |
| MS.gene23202.t1 | AT1G49480 | 35.338 | 133 | 68 | 5 | 149 | 273 | 88 | 210 | 3.37e-14 | 70.9 |
| MS.gene23202.t1 | AT1G49480 | 35.338 | 133 | 68 | 5 | 149 | 273 | 88 | 210 | 3.37e-14 | 70.9 |
Find 54 sgRNAs with CRISPR-Local
Find 120 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTCATTGTTCACATCTTT+AGG | 0.181697 | 7.3:-53825693 | MS.gene23202:CDS |
| CGAAGATGTGCACATGAAAA+TGG | 0.182439 | 7.3:+53827236 | None:intergenic |
| ATTCATCTTAGGTTATTAAA+TGG | 0.226202 | 7.3:-53825874 | MS.gene23202:CDS |
| CTTCATTGTTCACATCTTTA+GGG | 0.247443 | 7.3:-53825692 | MS.gene23202:CDS |
| TATTTCTCCACAAACTTTCT+TGG | 0.252264 | 7.3:+53827433 | None:intergenic |
| CTGTGTTAAAGTTGGGAAAT+TGG | 0.261586 | 7.3:-53827035 | MS.gene23202:CDS |
| TTTGGTAAAAGACACTTATT+AGG | 0.278617 | 7.3:-53825919 | MS.gene23202:CDS |
| AGAAAGTTTGTGGAGAAATA+TGG | 0.293086 | 7.3:-53827430 | MS.gene23202:CDS |
| GGTTATTAAATGGGAGAGTT+TGG | 0.317803 | 7.3:-53825864 | MS.gene23202:CDS |
| TAGATCGTTGGATACCCTTT+TGG | 0.321526 | 7.3:+53827168 | None:intergenic |
| AAAAGACACTTATTAGGTTT+AGG | 0.347950 | 7.3:-53825913 | MS.gene23202:CDS |
| TTCCTAATTAGATACCTTGC+AGG | 0.351726 | 7.3:+53825841 | None:intergenic |
| GGCCTGCAAGGTATCTAATT+AGG | 0.357731 | 7.3:-53825843 | MS.gene23202:CDS |
| ACCTCCGAATGATGAAGATT+TGG | 0.360032 | 7.3:-53827137 | MS.gene23202:CDS |
| CAGAACATACCAAGTGAGTT+TGG | 0.360251 | 7.3:-53825937 | MS.gene23202:CDS |
| AGCAAGGAGATATTCATCTT+AGG | 0.368678 | 7.3:-53825885 | MS.gene23202:CDS |
| ATTTCTCCACAAACTTTCTT+GGG | 0.389419 | 7.3:+53827434 | None:intergenic |
| CATTGATGCTGCTTGTAATC+TGG | 0.414628 | 7.3:-53826661 | MS.gene23202:intron |
| TGCAAGGTGGAGATTAGATT+TGG | 0.421430 | 7.3:-53827365 | MS.gene23202:CDS |
| TGGACGCATGACAGCAATAA+AGG | 0.428279 | 7.3:+53826689 | None:intergenic |
| TCCAAAGAGTTGAAGCCAAA+AGG | 0.428396 | 7.3:-53827183 | MS.gene23202:CDS |
| TTCATCTTAGGTTATTAAAT+GGG | 0.428424 | 7.3:-53825873 | MS.gene23202:CDS |
| AGCAATAGCTGTGTTAAAGT+TGG | 0.438457 | 7.3:-53827043 | MS.gene23202:CDS |
| AAATATGGTTTCAAAAGGGT+TGG | 0.440218 | 7.3:-53827327 | MS.gene23202:CDS |
| TCTTCCAAATCTTCATCATT+CGG | 0.441815 | 7.3:+53827133 | None:intergenic |
| AGATTTGAAATGTACTCAAC+TGG | 0.443004 | 7.3:-53825799 | MS.gene23202:CDS |
| AAAAGGGTATCCAACGATCT+AGG | 0.443698 | 7.3:-53827166 | MS.gene23202:CDS |
| GATGATCCCAAGAAAGTTTG+TGG | 0.445895 | 7.3:-53827440 | MS.gene23202:CDS |
| GCAATAGCTGTGTTAAAGTT+GGG | 0.451550 | 7.3:-53827042 | MS.gene23202:CDS |
| CCAAAGAGTTGAAGCCAAAA+GGG | 0.465061 | 7.3:-53827182 | MS.gene23202:CDS |
| TGGCTTCAACTCTTTGGAAA+GGG | 0.481840 | 7.3:+53827188 | None:intergenic |
| ATTAGGAAAGGCAATAGAAA+AGG | 0.485719 | 7.3:-53825826 | MS.gene23202:CDS |
| GAAGATGTGCACATGAAAAT+GGG | 0.487060 | 7.3:+53827237 | None:intergenic |
| CATATTTGAAAAGCAGAAGA+TGG | 0.487743 | 7.3:+53827269 | None:intergenic |
| AAGGTAAGTATAGTGCTAGT+AGG | 0.504595 | 7.3:+53825712 | None:intergenic |
| CATAGAGTTTGCTCTGTCAA+AGG | 0.505840 | 7.3:+53826728 | None:intergenic |
| CCTAAAGATGTGAACAATGA+AGG | 0.508003 | 7.3:+53825693 | None:intergenic |
| TTGGCTTCAACTCTTTGGAA+AGG | 0.513756 | 7.3:+53827187 | None:intergenic |
| TAAAGTTGGGAAATTGGAAA+AGG | 0.514132 | 7.3:-53827029 | MS.gene23202:CDS |
| GAAGACAACAACTTGAAAGT+TGG | 0.520581 | 7.3:-53825760 | MS.gene23202:CDS |
| AGGTTTATTGCCTAGATCGT+TGG | 0.520889 | 7.3:+53827156 | None:intergenic |
| AATCTCCACCTTGCACCACT+TGG | 0.524704 | 7.3:+53827373 | None:intergenic |
| CAAGCAGCATCAATGTATGA+TGG | 0.531742 | 7.3:+53826669 | None:intergenic |
| ATGGGAGAGTTTGGCCTGCA+AGG | 0.535413 | 7.3:-53825855 | MS.gene23202:CDS |
| AAGTATCATTCTTTATCTCA+AGG | 0.553311 | 7.3:-53827292 | MS.gene23202:CDS |
| CGCATGACAGCAATAAAGGA+TGG | 0.564569 | 7.3:+53826693 | None:intergenic |
| TTGAAATGTACTCAACTGGA+TGG | 0.576795 | 7.3:-53825795 | MS.gene23202:CDS |
| TTTGTGGAGAAATATGGAGA+AGG | 0.578281 | 7.3:-53827424 | MS.gene23202:CDS |
| CTATTGCTTTCAATTTCACA+AGG | 0.588207 | 7.3:+53827058 | None:intergenic |
| TCCAAATCTTCATCATTCGG+AGG | 0.588522 | 7.3:+53827136 | None:intergenic |
| GCAAGGTATCTAATTAGGAA+AGG | 0.604172 | 7.3:-53825838 | MS.gene23202:CDS |
| TAAAGACTCCAAGTGGTGCA+AGG | 0.618798 | 7.3:-53827381 | MS.gene23202:CDS |
| ATATATCTAAAGACTCCAAG+TGG | 0.664356 | 7.3:-53827388 | MS.gene23202:CDS |
| AGACTCCAAGTGGTGCAAGG+TGG | 0.681088 | 7.3:-53827378 | MS.gene23202:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTAATCCTTTATATTT+TGG | - | chr7.3:53826850-53826869 | MS.gene23202:intron | 10.0% |
| !!! | ATTTTTATTTTGAAGAAAAT+TGG | - | chr7.3:53826900-53826919 | MS.gene23202:intron | 10.0% |
| !!! | TATTTTTAGTTAAATATGTT+TGG | - | chr7.3:53826731-53826750 | MS.gene23202:CDS | 10.0% |
| !!! | TTTTTAATCCTTTATATTTT+GGG | - | chr7.3:53826851-53826870 | MS.gene23202:intron | 10.0% |
| !!! | AAGGTCATAAATTTTTTTAA+TGG | - | chr7.3:53826502-53826521 | MS.gene23202:intron | 15.0% |
| !!! | GTTAATCTTTATTGATAATT+TGG | - | chr7.3:53826947-53826966 | MS.gene23202:intron | 15.0% |
| !!! | TAAATTTTTTTAATGGATGA+AGG | - | chr7.3:53826509-53826528 | MS.gene23202:intron | 15.0% |
| !! | ATCAATGAAAATTATAGCTT+AGG | - | chr7.3:53826311-53826330 | MS.gene23202:intron | 20.0% |
| !! | ATTCATCTTAGGTTATTAAA+TGG | - | chr7.3:53827240-53827259 | MS.gene23202:CDS | 20.0% |
| !! | ATTGGTTAAGTTTCAAATTA+TGG | - | chr7.3:53826243-53826262 | MS.gene23202:intron | 20.0% |
| !! | ATTTACTTTCACATTATGAT+TGG | - | chr7.3:53826225-53826244 | MS.gene23202:intron | 20.0% |
| !! | GGTCTATAAATAATGAAAAA+TGG | - | chr7.3:53826872-53826891 | MS.gene23202:intron | 20.0% |
| !! | TCAATGAAAATTATAGCTTA+GGG | - | chr7.3:53826312-53826331 | MS.gene23202:intron | 20.0% |
| !! | TTCATCTTAGGTTATTAAAT+GGG | - | chr7.3:53827241-53827260 | MS.gene23202:CDS | 20.0% |
| !! | TTTATAGACCCAAAATATAA+AGG | + | chr7.3:53826862-53826881 | None:intergenic | 20.0% |
| !!! | AATTTGGTAATTTGTTATAG+TGG | + | chr7.3:53826683-53826702 | None:intergenic | 20.0% |
| !!! | TAAAAAGTGATGGAAAAATA+TGG | - | chr7.3:53825772-53825791 | MS.gene23202:CDS | 20.0% |
| !!! | TTAGTCCAAACAATTTTATA+TGG | - | chr7.3:53826780-53826799 | MS.gene23202:intron | 20.0% |
| ! | AAAAGACACTTATTAGGTTT+AGG | - | chr7.3:53827201-53827220 | MS.gene23202:CDS | 25.0% |
| ! | AAGTATCATTCTTTATCTCA+AGG | - | chr7.3:53825822-53825841 | MS.gene23202:CDS | 25.0% |
| ! | AGTATCAGTAAATACATTGT+CGG | + | chr7.3:53827125-53827144 | None:intergenic | 25.0% |
| ! | CAAGTCCATATAAAATTGTT+TGG | + | chr7.3:53826788-53826807 | None:intergenic | 25.0% |
| ! | GAATGAAAAGCTAATAACAT+AGG | + | chr7.3:53826202-53826221 | None:intergenic | 25.0% |
| ! | GGAAAAATATGGTTTCAAAA+GGG | - | chr7.3:53825783-53825802 | MS.gene23202:CDS | 25.0% |
| ! | TGGAAAAATATGGTTTCAAA+AGG | - | chr7.3:53825782-53825801 | MS.gene23202:CDS | 25.0% |
| ! | TTTGACCAGAGATATTTATA+GGG | + | chr7.3:53826758-53826777 | None:intergenic | 25.0% |
| ! | TTTGGTAAAAGACACTTATT+AGG | - | chr7.3:53827195-53827214 | MS.gene23202:CDS | 25.0% |
| !! | CAAATTTTACCCATTAAGTA+GGG | - | chr7.3:53826697-53826716 | MS.gene23202:CDS | 25.0% |
| !! | GATATTGACAAAAAGTGTAA+AGG | - | chr7.3:53826122-53826141 | MS.gene23202:intron | 25.0% |
| !! | TTAGATTTGGTAAAAAGTGA+TGG | - | chr7.3:53825762-53825781 | MS.gene23202:CDS | 25.0% |
| !! | TTTTGACCAGAGATATTTAT+AGG | + | chr7.3:53826759-53826778 | None:intergenic | 25.0% |
| !!! | TTGTTATAGTGGTTTTTCAA+GGG | + | chr7.3:53826672-53826691 | None:intergenic | 25.0% |
| !!! | TTTGTTATAGTGGTTTTTCA+AGG | + | chr7.3:53826673-53826692 | None:intergenic | 25.0% |
| AAATATGGTTTCAAAAGGGT+TGG | - | chr7.3:53825787-53825806 | MS.gene23202:CDS | 30.0% | |
| AGAAAGTTTGTGGAGAAATA+TGG | - | chr7.3:53825684-53825703 | MS.gene23202:CDS | 30.0% | |
| ATATATCTAAAGACTCCAAG+TGG | - | chr7.3:53825726-53825745 | MS.gene23202:CDS | 30.0% | |
| ATTAGGAAAGGCAATAGAAA+AGG | - | chr7.3:53827288-53827307 | MS.gene23202:CDS | 30.0% | |
| ATTTCTCCACAAACTTTCTT+GGG | + | chr7.3:53825683-53825702 | None:intergenic | 30.0% | |
| CATATTTGAAAAGCAGAAGA+TGG | + | chr7.3:53825848-53825867 | None:intergenic | 30.0% | |
| CTATTGCTTTCAATTTCACA+AGG | + | chr7.3:53826059-53826078 | None:intergenic | 30.0% | |
| CTTCATTGTTCACATCTTTA+GGG | - | chr7.3:53827422-53827441 | MS.gene23202:CDS | 30.0% | |
| TAAAGTTGGGAAATTGGAAA+AGG | - | chr7.3:53826085-53826104 | MS.gene23202:intron | 30.0% | |
| TATTTCTCCACAAACTTTCT+TGG | + | chr7.3:53825684-53825703 | None:intergenic | 30.0% | |
| TCTTCCAAATCTTCATCATT+CGG | + | chr7.3:53825984-53826003 | None:intergenic | 30.0% | |
| ! | AGATTTGAAATGTACTCAAC+TGG | - | chr7.3:53827315-53827334 | MS.gene23202:CDS | 30.0% |
| ! | ATACTTTTGACCCTACTTAA+TGG | + | chr7.3:53826710-53826729 | None:intergenic | 30.0% |
| ! | CAAACAAAGGTTTTGCTTAA+AGG | - | chr7.3:53826483-53826502 | MS.gene23202:intron | 30.0% |
| ! | CAGATTTGTGGTATTTTGTA+AGG | - | chr7.3:53826811-53826830 | MS.gene23202:intron | 30.0% |
| ! | CCAAATTTTACCCATTAAGT+AGG | - | chr7.3:53826696-53826715 | MS.gene23202:CDS | 30.0% |
| ! | CCTACTTAATGGGTAAAATT+TGG | + | chr7.3:53826699-53826718 | None:intergenic | 30.0% |
| ! | TACTTTTGACCCTACTTAAT+GGG | + | chr7.3:53826709-53826728 | None:intergenic | 30.0% |
| !! | ATTTTGGGTGGAACAATTTT+GGG | + | chr7.3:53826622-53826641 | None:intergenic | 30.0% |
| !! | CATCTTCTGCTTTTCAAATA+TGG | - | chr7.3:53825846-53825865 | MS.gene23202:CDS | 30.0% |
| !!! | CTTTTTTTGTGTTAATCCTC+CGG | - | chr7.3:53826537-53826556 | MS.gene23202:intron | 30.0% |
| !!! | GAAAGGGTATTTTATCTCTA+AGG | + | chr7.3:53825913-53825932 | None:intergenic | 30.0% |
| AAGGTAAGTATAGTGCTAGT+AGG | + | chr7.3:53827405-53827424 | None:intergenic | 35.0% | |
| AGCAAGGAGATATTCATCTT+AGG | - | chr7.3:53827229-53827248 | MS.gene23202:CDS | 35.0% | |
| AGCAATAGCTGTGTTAAAGT+TGG | - | chr7.3:53826071-53826090 | MS.gene23202:intron | 35.0% | |
| CCTAAAGATGTGAACAATGA+AGG | + | chr7.3:53827424-53827443 | None:intergenic | 35.0% | |
| CCTTCATTGTTCACATCTTT+AGG | - | chr7.3:53827421-53827440 | MS.gene23202:CDS | 35.0% | |
| CTGTGTTAAAGTTGGGAAAT+TGG | - | chr7.3:53826079-53826098 | MS.gene23202:intron | 35.0% | |
| GAAGACAACAACTTGAAAGT+TGG | - | chr7.3:53827354-53827373 | MS.gene23202:CDS | 35.0% | |
| GAAGATGTGCACATGAAAAT+GGG | + | chr7.3:53825880-53825899 | None:intergenic | 35.0% | |
| GCAATAGCTGTGTTAAAGTT+GGG | - | chr7.3:53826072-53826091 | MS.gene23202:intron | 35.0% | |
| GGTTATTAAATGGGAGAGTT+TGG | - | chr7.3:53827250-53827269 | MS.gene23202:CDS | 35.0% | |
| TTAGGTTTAGGCAAAAAGCA+AGG | - | chr7.3:53827213-53827232 | MS.gene23202:CDS | 35.0% | |
| TTCCTAATTAGATACCTTGC+AGG | + | chr7.3:53827276-53827295 | None:intergenic | 35.0% | |
| TTGAAATGTACTCAACTGGA+TGG | - | chr7.3:53827319-53827338 | MS.gene23202:CDS | 35.0% | |
| TTGGTCCCTATAAATATCTC+TGG | - | chr7.3:53826750-53826769 | MS.gene23202:CDS | 35.0% | |
| TTTGTGGAGAAATATGGAGA+AGG | - | chr7.3:53825690-53825709 | MS.gene23202:CDS | 35.0% | |
| ! | GAATTTTGCAGGAAAGCAAT+TGG | - | chr7.3:53826342-53826361 | MS.gene23202:intron | 35.0% |
| ! | GCAAGGTATCTAATTAGGAA+AGG | - | chr7.3:53827276-53827295 | MS.gene23202:CDS | 35.0% |
| ! | GTGGTATTTTGTAAGGAGTA+AGG | - | chr7.3:53826818-53826837 | MS.gene23202:intron | 35.0% |
| ! | TGTCTTTTACCAAACTCACT+TGG | + | chr7.3:53827189-53827208 | None:intergenic | 35.0% |
| !! | GATTTTGGGTGGAACAATTT+TGG | + | chr7.3:53826623-53826642 | None:intergenic | 35.0% |
| !! | TTTTCAAGGGCTAATCATTC+AGG | + | chr7.3:53826659-53826678 | None:intergenic | 35.0% |
| ACCTCCGAATGATGAAGATT+TGG | - | chr7.3:53825977-53825996 | MS.gene23202:intron | 40.0% | |
| AGGTTTATTGCCTAGATCGT+TGG | + | chr7.3:53825961-53825980 | None:intergenic | 40.0% | |
| ATCTGGTAAGCTGCAAACAA+AGG | - | chr7.3:53826470-53826489 | MS.gene23202:intron | 40.0% | |
| ATGGACTTGACTCAGATTTG+TGG | - | chr7.3:53826799-53826818 | MS.gene23202:intron | 40.0% | |
| CAAGCAGCATCAATGTATGA+TGG | + | chr7.3:53826448-53826467 | None:intergenic | 40.0% | |
| CAGAACATACCAAGTGAGTT+TGG | - | chr7.3:53827177-53827196 | MS.gene23202:CDS | 40.0% | |
| CCAAAGAGTTGAAGCCAAAA+GGG | - | chr7.3:53825932-53825951 | MS.gene23202:CDS | 40.0% | |
| CGAAGATGTGCACATGAAAA+TGG | + | chr7.3:53825881-53825900 | None:intergenic | 40.0% | |
| GGCTAGGTTATACTTCTTCA+CGG | + | chr7.3:53826601-53826620 | None:intergenic | 40.0% | |
| GGCTGAACTTCAGATTATCA+GGG | + | chr7.3:53826580-53826599 | None:intergenic | 40.0% | |
| TCCAAAGAGTTGAAGCCAAA+AGG | - | chr7.3:53825931-53825950 | MS.gene23202:CDS | 40.0% | |
| TCCAAATCTTCATCATTCGG+AGG | + | chr7.3:53825981-53826000 | None:intergenic | 40.0% | |
| TGCAAGGTGGAGATTAGATT+TGG | - | chr7.3:53825749-53825768 | MS.gene23202:CDS | 40.0% | |
| ! | CATAGAGTTTGCTCTGTCAA+AGG | + | chr7.3:53826389-53826408 | None:intergenic | 40.0% |
| ! | CATTGATGCTGCTTGTAATC+TGG | - | chr7.3:53826453-53826472 | MS.gene23202:intron | 40.0% |
| ! | TAGATCGTTGGATACCCTTT+TGG | + | chr7.3:53825949-53825968 | None:intergenic | 40.0% |
| ! | TGGCTTCAACTCTTTGGAAA+GGG | + | chr7.3:53825929-53825948 | None:intergenic | 40.0% |
| ! | TTGGCTTCAACTCTTTGGAA+AGG | + | chr7.3:53825930-53825949 | None:intergenic | 40.0% |
| !! | AAAAGGGTATCCAACGATCT+AGG | - | chr7.3:53825948-53825967 | MS.gene23202:intron | 40.0% |
| CGCATGACAGCAATAAAGGA+TGG | + | chr7.3:53826424-53826443 | None:intergenic | 45.0% | |
| CGGCTGAACTTCAGATTATC+AGG | + | chr7.3:53826581-53826600 | None:intergenic | 45.0% | |
| GTTCCACCCAAAATCGAACT+CGG | - | chr7.3:53826628-53826647 | MS.gene23202:intron | 45.0% | |
| TAAAGACTCCAAGTGGTGCA+AGG | - | chr7.3:53825733-53825752 | MS.gene23202:CDS | 45.0% | |
| TGGACGCATGACAGCAATAA+AGG | + | chr7.3:53826428-53826447 | None:intergenic | 45.0% | |
| TTCCACCCAAAATCGAACTC+GGG | - | chr7.3:53826629-53826648 | MS.gene23202:intron | 45.0% | |
| ! | AGGGTGTGCTTGAATTTTGC+AGG | - | chr7.3:53826331-53826350 | MS.gene23202:intron | 45.0% |
| ! | GAGAACCCGAGTTCGATTTT+GGG | + | chr7.3:53826637-53826656 | None:intergenic | 45.0% |
| ! | GGCCTGCAAGGTATCTAATT+AGG | - | chr7.3:53827271-53827290 | MS.gene23202:CDS | 45.0% |
| !!! | CCCTTTTGGCTTCAACTCTT+TGG | + | chr7.3:53825935-53825954 | None:intergenic | 45.0% |
| AATCTCCACCTTGCACCACT+TGG | + | chr7.3:53825744-53825763 | None:intergenic | 50.0% | |
| GTGTTAATCCTCCGGTTCCT+GGG | - | chr7.3:53826545-53826564 | MS.gene23202:intron | 50.0% | |
| TGTGTTAATCCTCCGGTTCC+TGG | - | chr7.3:53826544-53826563 | MS.gene23202:intron | 50.0% | |
| ! | AACCCGAGTTCGATTTTGGG+TGG | + | chr7.3:53826634-53826653 | None:intergenic | 50.0% |
| ! | GGAGAACCCGAGTTCGATTT+TGG | + | chr7.3:53826638-53826657 | None:intergenic | 50.0% |
| ! | GGGTGGAACAATTTTGGGCT+AGG | + | chr7.3:53826617-53826636 | None:intergenic | 50.0% |
| AGACTCCAAGTGGTGCAAGG+TGG | - | chr7.3:53825736-53825755 | MS.gene23202:CDS | 55.0% | |
| ATGGGAGAGTTTGGCCTGCA+AGG | - | chr7.3:53827259-53827278 | MS.gene23202:CDS | 55.0% | |
| ATCCTCCGGTTCCTGGGAGA+AGG | - | chr7.3:53826551-53826570 | MS.gene23202:intron | 60.0% | |
| TCCTCCGGTTCCTGGGAGAA+GGG | - | chr7.3:53826552-53826571 | MS.gene23202:intron | 60.0% | |
| CCTCCGGTTCCTGGGAGAAG+GGG | - | chr7.3:53826553-53826572 | MS.gene23202:intron | 65.0% | |
| CTCCGGTTCCTGGGAGAAGG+GGG | - | chr7.3:53826554-53826573 | MS.gene23202:intron | 65.0% | |
| TATCAGGGCCCCCTTCTCCC+AGG | + | chr7.3:53826565-53826584 | None:intergenic | 65.0% | |
| CCCCTTCTCCCAGGAACCGG+AGG | + | chr7.3:53826556-53826575 | None:intergenic | 70.0% | |
| GGCCCCCTTCTCCCAGGAAC+CGG | + | chr7.3:53826559-53826578 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 53825675 | 53827461 | 53825675 | ID=MS.gene23202 |
| chr7.3 | mRNA | 53825675 | 53827461 | 53825675 | ID=MS.gene23202.t1;Parent=MS.gene23202 |
| chr7.3 | exon | 53826993 | 53827461 | 53826993 | ID=MS.gene23202.t1.exon1;Parent=MS.gene23202.t1 |
| chr7.3 | CDS | 53826993 | 53827461 | 53826993 | ID=cds.MS.gene23202.t1;Parent=MS.gene23202.t1 |
| chr7.3 | exon | 53826662 | 53826783 | 53826662 | ID=MS.gene23202.t1.exon2;Parent=MS.gene23202.t1 |
| chr7.3 | CDS | 53826662 | 53826783 | 53826662 | ID=cds.MS.gene23202.t1;Parent=MS.gene23202.t1 |
| chr7.3 | exon | 53825675 | 53825956 | 53825675 | ID=MS.gene23202.t1.exon3;Parent=MS.gene23202.t1 |
| chr7.3 | CDS | 53825675 | 53825956 | 53825675 | ID=cds.MS.gene23202.t1;Parent=MS.gene23202.t1 |
| Gene Sequence |
| Protein sequence |
