Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23212.t1 | ABD32483.2 | 80.1 | 321 | 61 | 2 | 1 | 318 | 6 | 326 | 1.80E-140 | 508.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23212.t1 | Q8L3W1 | 27.5 | 338 | 192 | 6 | 13 | 304 | 6 | 336 | 4.9e-25 | 116.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23212.t1 | Q2HSK0 | 80.1 | 321 | 61 | 2 | 1 | 318 | 6 | 326 | 1.3e-140 | 508.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene23212.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23212.t1 | MTR_7g050710 | 80.062 | 321 | 61 | 2 | 1 | 318 | 1 | 321 | 0.0 | 526 |
| MS.gene23212.t1 | MTR_3g098790 | 70.219 | 319 | 88 | 2 | 1 | 318 | 1 | 313 | 3.18e-160 | 451 |
| MS.gene23212.t1 | MTR_7g050580 | 71.951 | 328 | 78 | 3 | 1 | 328 | 1 | 314 | 9.89e-160 | 449 |
| MS.gene23212.t1 | MTR_7g050560 | 66.061 | 330 | 94 | 4 | 1 | 328 | 1 | 314 | 9.99e-150 | 424 |
| MS.gene23212.t1 | MTR_7g050590 | 71.622 | 296 | 77 | 5 | 28 | 318 | 1 | 294 | 1.67e-148 | 420 |
| MS.gene23212.t1 | MTR_7g050720 | 57.188 | 313 | 120 | 7 | 7 | 305 | 4 | 316 | 4.15e-113 | 331 |
| MS.gene23212.t1 | MTR_8g103940 | 35.691 | 311 | 167 | 7 | 11 | 304 | 37 | 331 | 9.06e-52 | 178 |
| MS.gene23212.t1 | MTR_1g108780 | 34.219 | 301 | 169 | 9 | 21 | 307 | 8 | 293 | 5.07e-47 | 165 |
| MS.gene23212.t1 | MTR_7g050640 | 64.151 | 106 | 38 | 0 | 1 | 106 | 1 | 106 | 8.18e-43 | 144 |
| MS.gene23212.t1 | MTR_1g035460 | 33.115 | 305 | 172 | 8 | 28 | 311 | 1 | 294 | 1.11e-42 | 152 |
| MS.gene23212.t1 | MTR_5g044670 | 31.746 | 315 | 191 | 8 | 13 | 318 | 16 | 315 | 1.30e-42 | 150 |
| MS.gene23212.t1 | MTR_3g061350 | 33.441 | 311 | 172 | 13 | 1 | 303 | 1 | 284 | 6.39e-39 | 139 |
| MS.gene23212.t1 | MTR_3g061370 | 32.143 | 308 | 173 | 11 | 5 | 303 | 1 | 281 | 7.03e-39 | 139 |
| MS.gene23212.t1 | MTR_3g061320 | 31.579 | 304 | 165 | 11 | 10 | 303 | 9 | 279 | 2.62e-37 | 135 |
| MS.gene23212.t1 | MTR_3g061310 | 30.619 | 307 | 170 | 11 | 10 | 303 | 9 | 285 | 4.56e-37 | 134 |
| MS.gene23212.t1 | MTR_1g035620 | 32.895 | 304 | 161 | 10 | 10 | 302 | 6 | 277 | 1.58e-35 | 133 |
| MS.gene23212.t1 | MTR_3g061340 | 30.719 | 306 | 160 | 9 | 10 | 303 | 9 | 274 | 3.18e-35 | 129 |
| MS.gene23212.t1 | MTR_6g043890 | 33.677 | 291 | 170 | 8 | 11 | 290 | 13 | 291 | 2.75e-34 | 128 |
| MS.gene23212.t1 | MTR_1g035640 | 32.215 | 298 | 166 | 10 | 13 | 302 | 9 | 278 | 1.49e-32 | 126 |
| MS.gene23212.t1 | MTR_1g050845 | 33.224 | 304 | 148 | 11 | 10 | 302 | 6 | 265 | 6.64e-32 | 126 |
| MS.gene23212.t1 | MTR_3g061290 | 53.398 | 103 | 46 | 1 | 10 | 112 | 9 | 109 | 9.55e-32 | 118 |
| MS.gene23212.t1 | MTR_3g061330 | 51.456 | 103 | 48 | 1 | 10 | 112 | 9 | 109 | 7.65e-31 | 117 |
| MS.gene23212.t1 | MTR_1g035570 | 31.148 | 305 | 171 | 9 | 13 | 304 | 9 | 287 | 8.60e-29 | 115 |
| MS.gene23212.t1 | MTR_4g119990 | 30.449 | 312 | 201 | 10 | 11 | 311 | 13 | 319 | 3.06e-28 | 113 |
| MS.gene23212.t1 | MTR_3g005490 | 25.329 | 304 | 158 | 5 | 12 | 307 | 20 | 262 | 2.87e-27 | 108 |
| MS.gene23212.t1 | MTR_3g005480 | 25.000 | 312 | 164 | 6 | 5 | 307 | 13 | 263 | 2.06e-26 | 105 |
| MS.gene23212.t1 | MTR_5g070440 | 26.316 | 304 | 164 | 7 | 12 | 307 | 20 | 271 | 2.94e-25 | 102 |
| MS.gene23212.t1 | MTR_1g021400 | 25.360 | 347 | 200 | 8 | 11 | 312 | 28 | 360 | 6.51e-25 | 103 |
| MS.gene23212.t1 | MTR_6g061070 | 28.527 | 319 | 199 | 10 | 6 | 303 | 11 | 321 | 1.57e-24 | 103 |
| MS.gene23212.t1 | MTR_1g021360 | 27.797 | 295 | 190 | 8 | 11 | 296 | 182 | 462 | 4.29e-24 | 102 |
| MS.gene23212.t1 | MTR_1g021360 | 25.357 | 280 | 159 | 8 | 14 | 289 | 26 | 259 | 1.15e-12 | 68.9 |
| MS.gene23212.t1 | MTR_3g005420 | 27.632 | 304 | 174 | 9 | 4 | 307 | 282 | 539 | 2.39e-23 | 100 |
| MS.gene23212.t1 | MTR_3g005420 | 23.675 | 283 | 145 | 8 | 12 | 291 | 39 | 253 | 1.93e-14 | 74.3 |
| MS.gene23212.t1 | MTR_3g005460 | 25.902 | 305 | 166 | 9 | 11 | 303 | 260 | 516 | 2.57e-22 | 97.8 |
| MS.gene23212.t1 | MTR_3g005460 | 31.967 | 122 | 79 | 1 | 6 | 127 | 18 | 135 | 3.26e-16 | 79.7 |
| MS.gene23212.t1 | MTR_3g061220 | 42.718 | 103 | 44 | 2 | 10 | 112 | 9 | 96 | 1.55e-21 | 88.6 |
| MS.gene23212.t1 | MTR_1g021410 | 23.373 | 338 | 198 | 8 | 11 | 303 | 21 | 342 | 7.64e-21 | 92.4 |
| MS.gene23212.t1 | MTR_1g021330 | 25.000 | 332 | 200 | 6 | 11 | 296 | 24 | 352 | 9.81e-21 | 92.0 |
| MS.gene23212.t1 | MTR_1g035650 | 32.407 | 216 | 122 | 7 | 10 | 219 | 6 | 203 | 2.08e-20 | 88.2 |
| MS.gene23212.t1 | MTR_4g068320 | 39.394 | 99 | 60 | 0 | 13 | 111 | 6 | 104 | 4.46e-20 | 90.9 |
| MS.gene23212.t1 | MTR_4g068320 | 32.812 | 128 | 80 | 2 | 177 | 304 | 267 | 388 | 8.49e-14 | 72.0 |
| MS.gene23212.t1 | MTR_1g034240 | 40.404 | 99 | 59 | 0 | 13 | 111 | 7 | 105 | 9.59e-20 | 89.7 |
| MS.gene23212.t1 | MTR_1g034240 | 31.788 | 151 | 93 | 3 | 177 | 323 | 271 | 415 | 1.81e-15 | 77.0 |
| MS.gene23212.t1 | MTR_1g021270 | 24.633 | 341 | 197 | 7 | 8 | 296 | 11 | 343 | 1.96e-19 | 89.4 |
| MS.gene23212.t1 | MTR_1g021380 | 23.263 | 331 | 215 | 8 | 11 | 312 | 20 | 340 | 2.72e-18 | 84.7 |
| MS.gene23212.t1 | MTR_1g035480 | 39.655 | 116 | 67 | 2 | 8 | 123 | 12 | 124 | 4.14e-18 | 81.3 |
| MS.gene23212.t1 | MTR_3g005495 | 26.370 | 292 | 153 | 6 | 4 | 295 | 236 | 465 | 5.03e-18 | 85.1 |
| MS.gene23212.t1 | MTR_3g005495 | 32.323 | 99 | 63 | 1 | 29 | 127 | 29 | 123 | 1.59e-14 | 74.3 |
| MS.gene23212.t1 | MTR_1g021435 | 22.714 | 339 | 209 | 7 | 11 | 302 | 20 | 352 | 1.39e-17 | 83.2 |
| MS.gene23212.t1 | MTR_1g021350 | 27.476 | 313 | 183 | 14 | 11 | 296 | 20 | 315 | 1.53e-16 | 79.7 |
| MS.gene23212.t1 | MTR_1g035500 | 36.441 | 118 | 72 | 2 | 6 | 123 | 18 | 132 | 5.17e-16 | 75.5 |
| MS.gene23212.t1 | MTR_1g035520 | 27.044 | 318 | 190 | 12 | 17 | 302 | 75 | 382 | 8.65e-16 | 77.8 |
| MS.gene23212.t1 | MTR_1g035440 | 40.000 | 105 | 62 | 1 | 11 | 114 | 13 | 117 | 1.11e-15 | 75.9 |
| MS.gene23212.t1 | MTR_1g033740 | 36.441 | 118 | 72 | 2 | 6 | 123 | 15 | 129 | 1.17e-15 | 74.7 |
| MS.gene23212.t1 | MTR_1g034210 | 35.294 | 102 | 66 | 0 | 13 | 114 | 7 | 108 | 3.39e-15 | 75.5 |
| MS.gene23212.t1 | MTR_3g005440 | 32.110 | 109 | 71 | 1 | 29 | 137 | 36 | 141 | 4.87e-15 | 75.9 |
| MS.gene23212.t1 | MTR_3g005440 | 32.203 | 118 | 80 | 0 | 12 | 129 | 241 | 358 | 7.57e-13 | 69.3 |
| MS.gene23212.t1 | MTR_1g034210 | 35.294 | 102 | 66 | 0 | 13 | 114 | 7 | 108 | 5.83e-15 | 75.5 |
| MS.gene23212.t1 | MTR_3g005420 | 23.675 | 283 | 145 | 8 | 12 | 291 | 20 | 234 | 1.89e-14 | 74.3 |
| MS.gene23212.t1 | MTR_1g021320 | 35.870 | 92 | 59 | 0 | 11 | 102 | 23 | 114 | 3.95e-14 | 73.6 |
| MS.gene23212.t1 | MTR_1g021320 | 36.364 | 99 | 60 | 3 | 11 | 108 | 182 | 278 | 8.11e-13 | 69.7 |
| MS.gene23212.t1 | MTR_1g021440 | 35.870 | 92 | 58 | 1 | 11 | 102 | 21 | 111 | 5.79e-14 | 71.6 |
| MS.gene23212.t1 | MTR_1g021440 | 35.870 | 92 | 58 | 1 | 11 | 102 | 21 | 111 | 5.87e-14 | 71.6 |
| MS.gene23212.t1 | MTR_1g021440 | 35.870 | 92 | 58 | 1 | 11 | 102 | 21 | 111 | 1.11e-13 | 71.6 |
| MS.gene23212.t1 | MTR_1g021440 | 35.870 | 92 | 58 | 1 | 11 | 102 | 21 | 111 | 1.24e-13 | 71.2 |
| MS.gene23212.t1 | MTR_1g035510 | 26.829 | 246 | 131 | 11 | 28 | 251 | 1 | 219 | 3.28e-13 | 68.6 |
| MS.gene23212.t1 | MTR_1g021290 | 28.947 | 114 | 78 | 1 | 17 | 127 | 159 | 272 | 2.43e-12 | 67.4 |
| MS.gene23212.t1 | MTR_1g021290 | 30.400 | 125 | 76 | 4 | 11 | 132 | 26 | 142 | 1.21e-11 | 65.1 |
| MS.gene23212.t1 | MTR_1g035490 | 36.667 | 120 | 69 | 4 | 187 | 304 | 82 | 196 | 3.73e-12 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23212.t1 | AT3G18990 | 27.219 | 338 | 193 | 8 | 13 | 304 | 6 | 336 | 4.77e-29 | 114 |
| MS.gene23212.t1 | AT3G18990 | 44.444 | 99 | 55 | 0 | 13 | 111 | 6 | 104 | 1.87e-22 | 97.1 |
| MS.gene23212.t1 | AT4G33280 | 26.727 | 333 | 188 | 11 | 12 | 312 | 19 | 327 | 8.66e-22 | 94.7 |
| MS.gene23212.t1 | AT4G01580 | 40.385 | 104 | 62 | 0 | 13 | 116 | 30 | 133 | 1.84e-20 | 87.8 |
| MS.gene23212.t1 | AT1G49475 | 38.889 | 108 | 65 | 1 | 13 | 120 | 34 | 140 | 2.20e-20 | 87.8 |
| MS.gene23212.t1 | AT3G18960 | 39.423 | 104 | 63 | 0 | 13 | 116 | 30 | 133 | 1.70e-19 | 85.9 |
| MS.gene23212.t1 | AT3G18960 | 39.423 | 104 | 63 | 0 | 13 | 116 | 30 | 133 | 1.71e-19 | 85.5 |
| MS.gene23212.t1 | AT3G18960 | 42.045 | 88 | 51 | 0 | 29 | 116 | 9 | 96 | 1.38e-16 | 76.6 |
| MS.gene23212.t1 | AT4G33280 | 34.000 | 100 | 62 | 2 | 12 | 107 | 19 | 118 | 3.76e-11 | 63.9 |
| MS.gene23212.t1 | AT3G53310 | 32.692 | 104 | 67 | 3 | 1 | 104 | 1 | 101 | 9.91e-11 | 62.0 |
Find 52 sgRNAs with CRISPR-Local
Find 151 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGATTTGTACCTCAAATT+TGG | 0.180864 | 7.2:+52113317 | None:intergenic |
| TGCAAAATGGAAATTAAATT+TGG | 0.194062 | 7.2:-52113445 | MS.gene23212:CDS |
| TTTCATCAACAATGTGAAAT+TGG | 0.209794 | 7.2:-52113156 | MS.gene23212:CDS |
| GAGAGGAAATATTCAATTTC+AGG | 0.223030 | 7.2:-52112193 | MS.gene23212:CDS |
| AAATTTGAGGTACAAATCTT+TGG | 0.253897 | 7.2:-52113315 | MS.gene23212:CDS |
| GTCTCTACACATATAGCTTT+TGG | 0.322992 | 7.2:+52113477 | None:intergenic |
| GAGTAGCTTCTCCTTTCATT+TGG | 0.324351 | 7.2:+52111857 | None:intergenic |
| AGTAGCTTCTCCTTTCATTT+GGG | 0.353063 | 7.2:+52111858 | None:intergenic |
| AGGTGTTGAATGGGAGAGTT+TGG | 0.369308 | 7.2:-52112173 | MS.gene23212:CDS |
| AGACTCCAAATGGTGCAAAA+TGG | 0.405129 | 7.2:-52113458 | MS.gene23212:CDS |
| ATTCAATTTCAGGTGTTGAA+TGG | 0.405726 | 7.2:-52112183 | MS.gene23212:CDS |
| TGTTGAACACCACTTTCTTC+CGG | 0.410959 | 7.2:-52112715 | MS.gene23212:intron |
| TTCAATTTCAGGTGTTGAAT+GGG | 0.413248 | 7.2:-52112182 | MS.gene23212:CDS |
| AATCTTTGGAAAGAGTGCTT+TGG | 0.429279 | 7.2:-52113301 | MS.gene23212:CDS |
| GGTCTGCTAGGTATTCTATC+AGG | 0.438342 | 7.2:-52112152 | MS.gene23212:CDS |
| AAAGGCTTACAAGCTTTCCT+TGG | 0.438493 | 7.2:+52114250 | None:intergenic |
| AGATATGGTTTGAGAAGGGT+TGG | 0.481735 | 7.2:-52113407 | MS.gene23212:CDS |
| GGTGATGCCAAGAAAGTTTG+TGG | 0.482121 | 7.2:-52113520 | MS.gene23212:CDS |
| TCTATCAGGATGTGCGCTAA+AGG | 0.492186 | 7.2:-52112138 | MS.gene23212:CDS |
| AAGGACAATAACTTGAAAGT+TGG | 0.499244 | 7.2:-52112075 | MS.gene23212:CDS |
| ATCGTAGAGCAGCTCAAAAG+AGG | 0.502355 | 7.2:-52113200 | MS.gene23212:CDS |
| AGGTTTATTTCCTTGACCAT+TGG | 0.505200 | 7.2:+52113236 | None:intergenic |
| ATGGGAGAGTTTGGTCTGCT+AGG | 0.505527 | 7.2:-52112164 | MS.gene23212:CDS |
| TTACAAGCTTTCCTTGGAGA+AGG | 0.524389 | 7.2:+52114256 | None:intergenic |
| TCTAAAGATATGAACAATGA+AGG | 0.545794 | 7.2:+52112011 | None:intergenic |
| TGGCAAGATATGGTTTGAGA+AGG | 0.555350 | 7.2:-52113412 | MS.gene23212:CDS |
| TGTAAAACATGGAAAATCAC+AGG | 0.559700 | 7.2:-52113121 | MS.gene23212:CDS |
| CTAAAATTTGAACTCACAAG+TGG | 0.566527 | 7.2:-52112114 | MS.gene23212:CDS |
| TGAACTCACAAGTGGATGGA+AGG | 0.567593 | 7.2:-52112106 | MS.gene23212:CDS |
| GCAGATTCTTCCCAAATGAA+AGG | 0.569807 | 7.2:-52111868 | MS.gene23212:intron |
| CTCATGACAACAACAAAGGA+TGG | 0.571041 | 7.2:+52112747 | None:intergenic |
| GAGCATCACTCTCTAGCTCA+TGG | 0.577825 | 7.2:-52113372 | MS.gene23212:CDS |
| ACATTGTTGATGAAATTCAA+AGG | 0.586074 | 7.2:+52113164 | None:intergenic |
| TTTGATTTGAATAAGAAGAG+AGG | 0.586918 | 7.2:-52112210 | MS.gene23212:CDS |
| ATATGTGTAGAGACTCCAAA+TGG | 0.588670 | 7.2:-52113468 | MS.gene23212:CDS |
| TGCAGCTTACCGGAAGAAAG+TGG | 0.589285 | 7.2:+52112706 | None:intergenic |
| CATTGTTCATATCTTTAGAG+AGG | 0.592333 | 7.2:-52112007 | MS.gene23212:CDS |
| AGCAGTAGTTGTGTAAAACA+TGG | 0.593692 | 7.2:-52113132 | MS.gene23212:CDS |
| AATTTGAACTCACAAGTGGA+TGG | 0.599548 | 7.2:-52112110 | MS.gene23212:CDS |
| AAGAAGGTCTCCAATGGTCA+AGG | 0.600566 | 7.2:-52113246 | MS.gene23212:CDS |
| GGCAAGATATGGTTTGAGAA+GGG | 0.606783 | 7.2:-52113411 | MS.gene23212:CDS |
| CTTACTGAAAACCTTCTCCA+AGG | 0.626110 | 7.2:-52114267 | MS.gene23212:CDS |
| TGGATGGAAGGCATTTGCAA+AGG | 0.640290 | 7.2:-52112094 | MS.gene23212:CDS |
| TGTGTCTTACAAAACAAGGA+TGG | 0.644962 | 7.2:+52112234 | None:intergenic |
| CAAATTGATAGAATGTCCAA+AGG | 0.647085 | 7.2:-52113087 | MS.gene23212:intron |
| AAAGTGTGTCTTACAAAACA+AGG | 0.647663 | 7.2:+52112230 | None:intergenic |
| CAAGGAAATAAACCTCCGAA+TGG | 0.648381 | 7.2:-52113228 | MS.gene23212:CDS |
| GAAGCTAAGAAGGTCTCCAA+TGG | 0.650536 | 7.2:-52113252 | MS.gene23212:CDS |
| TGCACTCATGACAACAACAA+AGG | 0.665197 | 7.2:+52112743 | None:intergenic |
| AAAACATGGAAAATCACAGG+TGG | 0.684763 | 7.2:-52113118 | MS.gene23212:CDS |
| TTGTTGATGAAATTCAAAGG+AGG | 0.689383 | 7.2:+52113167 | None:intergenic |
| CATGGCTAGTGAGATTGCTG+AGG | 0.696319 | 7.2:-52114319 | MS.gene23212:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATTAACTGAAATATTAT+AGG | - | chr7.2:52113777-52113796 | MS.gene23212:intron | 10.0% |
| !!! | AAATTATTTTACATTACTTT+AGG | + | chr7.2:52112580-52112599 | None:intergenic | 10.0% |
| !!! | ATATTATCATTTTTATTTTC+TGG | - | chr7.2:52113183-52113202 | MS.gene23212:CDS | 10.0% |
| !! | AATAAATAAAATTTCTCTCT+AGG | + | chr7.2:52112403-52112422 | None:intergenic | 15.0% |
| !! | AGTTATTTATTTGTATTAGA+GGG | + | chr7.2:52112312-52112331 | None:intergenic | 15.0% |
| !! | ATTAGAATAACTTAATTAGT+TGG | - | chr7.2:52113241-52113260 | MS.gene23212:CDS | 15.0% |
| !! | ATTATTGAAATTATTACACT+TGG | - | chr7.2:52113647-52113666 | MS.gene23212:intron | 15.0% |
| !! | TCACATAAACATTTATAATA+TGG | + | chr7.2:52112072-52112091 | None:intergenic | 15.0% |
| !!! | AGATTACTTGTTAAAAATTT+GGG | - | chr7.2:52112448-52112467 | MS.gene23212:intron | 15.0% |
| !!! | ATGTTATTTATGTTTGTATT+TGG | - | chr7.2:52111986-52112005 | MS.gene23212:CDS | 15.0% |
| !!! | GGTGTTTTTATTTTTATTTT+TGG | + | chr7.2:52113858-52113877 | None:intergenic | 15.0% |
| !!! | TAGATTACTTGTTAAAAATT+TGG | - | chr7.2:52112447-52112466 | MS.gene23212:intron | 15.0% |
| !! | AACAACAACAAATAATCTAA+AGG | + | chr7.2:52111935-52111954 | None:intergenic | 20.0% |
| !! | ATCAATTGTTCATGTAATTT+AGG | + | chr7.2:52112199-52112218 | None:intergenic | 20.0% |
| !! | ATTGTTTAACATTTCAAAGT+AGG | - | chr7.2:52114198-52114217 | MS.gene23212:intron | 20.0% |
| !! | ATTTATAATATGGCATCATA+AGG | + | chr7.2:52112062-52112081 | None:intergenic | 20.0% |
| !! | GAGTTATTTATTTGTATTAG+AGG | + | chr7.2:52112313-52112332 | None:intergenic | 20.0% |
| !! | GATGTTAAAAAGATCATATA+TGG | + | chr7.2:52113543-52113562 | None:intergenic | 20.0% |
| !! | TGCAAAATGGAAATTAAATT+TGG | - | chr7.2:52112719-52112738 | MS.gene23212:CDS | 20.0% |
| !! | TTAAATTTGGTAAAAAGTGA+TGG | - | chr7.2:52112732-52112751 | MS.gene23212:CDS | 20.0% |
| !!! | AACTCTAAATTTGAAATTAC+TGG | + | chr7.2:52112111-52112130 | None:intergenic | 20.0% |
| !!! | CATTTACATTTTCTATTGTT+TGG | - | chr7.2:52113898-52113917 | MS.gene23212:intron | 20.0% |
| !!! | TTTTAAGAACGTTTCTTTTT+AGG | - | chr7.2:52112266-52112285 | MS.gene23212:intron | 20.0% |
| ! | AAAGATTTGTACCTCAAATT+TGG | + | chr7.2:52112850-52112869 | None:intergenic | 25.0% |
| ! | AGAAAGTTTGTGGAAAAATA+TGG | - | chr7.2:52112654-52112673 | MS.gene23212:intron | 25.0% |
| ! | ATATGGTGTAATTAATTGAC+AGG | - | chr7.2:52112623-52112642 | MS.gene23212:intron | 25.0% |
| ! | ATATTTGACGATAATCTTCA+AGG | + | chr7.2:52113299-52113318 | None:intergenic | 25.0% |
| ! | GTTAAAAAGATCATATATGG+TGG | + | chr7.2:52113540-52113559 | None:intergenic | 25.0% |
| ! | TCTAAAGATATGAACAATGA+AGG | + | chr7.2:52114156-52114175 | None:intergenic | 25.0% |
| ! | TGAAAAAACTTCCAAATTTG+AGG | - | chr7.2:52112836-52112855 | MS.gene23212:intron | 25.0% |
| ! | TTTATTCAATTTGTCCCATT+TGG | - | chr7.2:52112522-52112541 | MS.gene23212:intron | 25.0% |
| ! | TTTCATCAACAATGTGAAAT+TGG | - | chr7.2:52113008-52113027 | MS.gene23212:intron | 25.0% |
| ! | TTTGTGGAAAAATATGGAAA+AGG | - | chr7.2:52112660-52112679 | MS.gene23212:intron | 25.0% |
| !! | AAATTTGAGGTACAAATCTT+TGG | - | chr7.2:52112849-52112868 | MS.gene23212:intron | 25.0% |
| !! | ACATTGTTGATGAAATTCAA+AGG | + | chr7.2:52113003-52113022 | None:intergenic | 25.0% |
| !! | TACATTACTTTAGGAAATAC+TGG | + | chr7.2:52112571-52112590 | None:intergenic | 25.0% |
| !! | TATTTTTCCACAAACTTTCT+TGG | + | chr7.2:52112654-52112673 | None:intergenic | 25.0% |
| !! | TGCAAAATTGGAACATTTTA+AGG | + | chr7.2:52113325-52113344 | None:intergenic | 25.0% |
| !! | TTAAAATGTTCCAATTTTGC+AGG | - | chr7.2:52113324-52113343 | MS.gene23212:CDS | 25.0% |
| !!! | AAATTACTGGTTTTACTGTT+AGG | + | chr7.2:52112098-52112117 | None:intergenic | 25.0% |
| !!! | GGAAATTTTTTTATTGCTGT+TGG | + | chr7.2:52113519-52113538 | None:intergenic | 25.0% |
| !!! | TTTGATTTGAATAAGAAGAG+AGG | - | chr7.2:52113954-52113973 | MS.gene23212:intron | 25.0% |
| AAAGTGTGTCTTACAAAACA+AGG | + | chr7.2:52113937-52113956 | None:intergenic | 30.0% | |
| AACTACCTGATGAGTATTTA+GGG | - | chr7.2:52112358-52112377 | MS.gene23212:intron | 30.0% | |
| AAGGACAATAACTTGAAAGT+TGG | - | chr7.2:52114089-52114108 | MS.gene23212:intron | 30.0% | |
| ATGATCTTGAAAAAGTGGAT+TGG | + | chr7.2:52111876-52111895 | None:intergenic | 30.0% | |
| CAAAAAAGTTGAAGCTAAGA+AGG | - | chr7.2:52112902-52112921 | MS.gene23212:intron | 30.0% | |
| CAAATTGATAGAATGTCCAA+AGG | - | chr7.2:52113077-52113096 | MS.gene23212:intron | 30.0% | |
| CTAAAATTTGAACTCACAAG+TGG | - | chr7.2:52114050-52114069 | MS.gene23212:intron | 30.0% | |
| CTCCTGTAATAAACATAATC+CGG | - | chr7.2:52112330-52112349 | MS.gene23212:intron | 30.0% | |
| GAGAGGAAATATTCAATTTC+AGG | - | chr7.2:52113971-52113990 | MS.gene23212:intron | 30.0% | |
| GTAATCACATGTGTCAATAT+CGG | + | chr7.2:52113613-52113632 | None:intergenic | 30.0% | |
| TAAAAAGTGATGGCAAGATA+TGG | - | chr7.2:52112742-52112761 | MS.gene23212:CDS | 30.0% | |
| TAACTACCTGATGAGTATTT+AGG | - | chr7.2:52112357-52112376 | MS.gene23212:intron | 30.0% | |
| TAAGGATGATCTTGAAAAAG+TGG | + | chr7.2:52111881-52111900 | None:intergenic | 30.0% | |
| TACCGGATTATGTTTATTAC+AGG | + | chr7.2:52112335-52112354 | None:intergenic | 30.0% | |
| TGTAAAACATGGAAAATCAC+AGG | - | chr7.2:52113043-52113062 | MS.gene23212:intron | 30.0% | |
| ! | AATTTCCATTTTGCACCATT+TGG | + | chr7.2:52112714-52112733 | None:intergenic | 30.0% |
| ! | ATCAATTTTACCGTGACAAT+TGG | + | chr7.2:52113717-52113736 | None:intergenic | 30.0% |
| ! | ATGTTGATGAATGAAAAGAC+TGG | + | chr7.2:52113881-52113900 | None:intergenic | 30.0% |
| ! | CATTGTTCATATCTTTAGAG+AGG | - | chr7.2:52114157-52114176 | MS.gene23212:intron | 30.0% |
| ! | TGAAATAGAGCTGTCAATTT+TGG | - | chr7.2:52112152-52112171 | MS.gene23212:CDS | 30.0% |
| ! | TGTTGATGAATGAAAAGACT+GGG | + | chr7.2:52113880-52113899 | None:intergenic | 30.0% |
| ! | TTGTTGATGAAATTCAAAGG+AGG | + | chr7.2:52113000-52113019 | None:intergenic | 30.0% |
| !! | AACTTGTTTTCCTGCAAAAT+TGG | + | chr7.2:52113337-52113356 | None:intergenic | 30.0% |
| !! | ATTCAATTTCAGGTGTTGAA+TGG | - | chr7.2:52113981-52114000 | MS.gene23212:intron | 30.0% |
| !! | TCAATTTTGGTCAAACCTAA+TGG | - | chr7.2:52112165-52112184 | MS.gene23212:CDS | 30.0% |
| !! | TTCAATTTCAGGTGTTGAAT+GGG | - | chr7.2:52113982-52114001 | MS.gene23212:intron | 30.0% |
| !! | TTTTTGGTGATCAAAAGACT+GGG | + | chr7.2:52113842-52113861 | None:intergenic | 30.0% |
| !!! | ATTTTTGGTGATCAAAAGAC+TGG | + | chr7.2:52113843-52113862 | None:intergenic | 30.0% |
| AAAACATGGAAAATCACAGG+TGG | - | chr7.2:52113046-52113065 | MS.gene23212:intron | 35.0% | |
| AATGTTTCTTTGCAGCTTAC+CGG | + | chr7.2:52113471-52113490 | None:intergenic | 35.0% | |
| AATTTGAACTCACAAGTGGA+TGG | - | chr7.2:52114054-52114073 | MS.gene23212:intron | 35.0% | |
| ACTACCTGATGAGTATTTAG+GGG | - | chr7.2:52112359-52112378 | MS.gene23212:intron | 35.0% | |
| AGCAGTAGTTGTGTAAAACA+TGG | - | chr7.2:52113032-52113051 | MS.gene23212:intron | 35.0% | |
| AGGTTTATTTCCTTGACCAT+TGG | + | chr7.2:52112931-52112950 | None:intergenic | 35.0% | |
| AGTAGCTTCTCCTTTCATTT+GGG | + | chr7.2:52114309-52114328 | None:intergenic | 35.0% | |
| ATATGTGTAGAGACTCCAAA+TGG | - | chr7.2:52112696-52112715 | MS.gene23212:intron | 35.0% | |
| CATTATGTAGCCAATTGTCA+CGG | - | chr7.2:52113704-52113723 | MS.gene23212:intron | 35.0% | |
| GACGTAAAATCGTATACCTT+TGG | + | chr7.2:52113096-52113115 | None:intergenic | 35.0% | |
| GTAAGCTGCAAAGAAACATT+TGG | - | chr7.2:52113471-52113490 | MS.gene23212:CDS | 35.0% | |
| TGACAATTGGCTACATAATG+TGG | + | chr7.2:52113704-52113723 | None:intergenic | 35.0% | |
| TGTGTCTTACAAAACAAGGA+TGG | + | chr7.2:52113933-52113952 | None:intergenic | 35.0% | |
| ! | GTCTCTACACATATAGCTTT+TGG | + | chr7.2:52112690-52112709 | None:intergenic | 35.0% |
| ! | GTTGATGAATGAAAAGACTG+GGG | + | chr7.2:52113879-52113898 | None:intergenic | 35.0% |
| !! | AATCTTTGGAAAGAGTGCTT+TGG | - | chr7.2:52112863-52112882 | MS.gene23212:intron | 35.0% |
| !! | ATTGATTCATTTTGCCAGTC+CGG | - | chr7.2:52112213-52112232 | MS.gene23212:CDS | 35.0% |
| AAAGGCTTACAAGCTTTCCT+TGG | + | chr7.2:52111917-52111936 | None:intergenic | 40.0% | |
| AATTTGTCCCATTTGGCTAG+GGG | - | chr7.2:52112529-52112548 | MS.gene23212:intron | 40.0% | |
| ACATCAACACTTACGATCGA+AGG | - | chr7.2:52113558-52113577 | MS.gene23212:intron | 40.0% | |
| ACATGTGTCAATATCGGACA+CGG | + | chr7.2:52113607-52113626 | None:intergenic | 40.0% | |
| AGACTCCAAATGGTGCAAAA+TGG | - | chr7.2:52112706-52112725 | MS.gene23212:intron | 40.0% | |
| AGATATGGTTTGAGAAGGGT+TGG | - | chr7.2:52112757-52112776 | MS.gene23212:CDS | 40.0% | |
| AGCCTAAAACACACCAGTTT+GGG | + | chr7.2:52112484-52112503 | None:intergenic | 40.0% | |
| CAAGGAAATAAACCTCCGAA+TGG | - | chr7.2:52112936-52112955 | MS.gene23212:intron | 40.0% | |
| CAATTTGTCCCATTTGGCTA+GGG | - | chr7.2:52112528-52112547 | MS.gene23212:intron | 40.0% | |
| CTACCTGATGAGTATTTAGG+GGG | - | chr7.2:52112360-52112379 | MS.gene23212:intron | 40.0% | |
| CTCATCAGGTAGTTATCTAC+CGG | + | chr7.2:52112352-52112371 | None:intergenic | 40.0% | |
| CTCATGACAACAACAAAGGA+TGG | + | chr7.2:52113420-52113439 | None:intergenic | 40.0% | |
| CTTACTGAAAACCTTCTCCA+AGG | - | chr7.2:52111897-52111916 | MS.gene23212:intron | 40.0% | |
| GAGTAGCTTCTCCTTTCATT+TGG | + | chr7.2:52114310-52114329 | None:intergenic | 40.0% | |
| GCAGATTCTTCCCAAATGAA+AGG | - | chr7.2:52114296-52114315 | MS.gene23212:CDS | 40.0% | |
| GGCAAGATATGGTTTGAGAA+GGG | - | chr7.2:52112753-52112772 | MS.gene23212:CDS | 40.0% | |
| TACGTCTTCTTCATTGTGTC+AGG | - | chr7.2:52113110-52113129 | MS.gene23212:CDS | 40.0% | |
| TAGCCTAAAACACACCAGTT+TGG | + | chr7.2:52112485-52112504 | None:intergenic | 40.0% | |
| TAGGGGGCTTAGAGATATTT+GGG | - | chr7.2:52112376-52112395 | MS.gene23212:intron | 40.0% | |
| TCAATTTGTCCCATTTGGCT+AGG | - | chr7.2:52112527-52112546 | MS.gene23212:intron | 40.0% | |
| TGCACTCATGACAACAACAA+AGG | + | chr7.2:52113424-52113443 | None:intergenic | 40.0% | |
| TGGCAAGATATGGTTTGAGA+AGG | - | chr7.2:52112752-52112771 | MS.gene23212:CDS | 40.0% | |
| TGTTGAACACCACTTTCTTC+CGG | - | chr7.2:52113449-52113468 | MS.gene23212:CDS | 40.0% | |
| TTACAAGCTTTCCTTGGAGA+AGG | + | chr7.2:52111911-52111930 | None:intergenic | 40.0% | |
| TTAGGGGGCTTAGAGATATT+TGG | - | chr7.2:52112375-52112394 | MS.gene23212:intron | 40.0% | |
| ! | AAAACACACCAGTTTGGGTT+TGG | + | chr7.2:52112479-52112498 | None:intergenic | 40.0% |
| ! | AACCCAAACTGGTGTGTTTT+AGG | - | chr7.2:52112479-52112498 | MS.gene23212:intron | 40.0% |
| ! | ATTTAGGAGTGCAGTCCATT+AGG | + | chr7.2:52112183-52112202 | None:intergenic | 40.0% |
| ! | CTTGGAGAAGGTTTTCAGTA+AGG | + | chr7.2:52111899-52111918 | None:intergenic | 40.0% |
| ! | GCTCTACGATTTTCACCATT+CGG | + | chr7.2:52112954-52112973 | None:intergenic | 40.0% |
| !! | GGTGTGTTTTAGGCTATGAA+CGG | - | chr7.2:52112489-52112508 | MS.gene23212:intron | 40.0% |
| !! | TACATAATGTGGCACTGACA+CGG | + | chr7.2:52113693-52113712 | None:intergenic | 40.0% |
| AAGAAGGTCTCCAATGGTCA+AGG | - | chr7.2:52112918-52112937 | MS.gene23212:intron | 45.0% | |
| AAGCCCCCTAAATACTCATC+AGG | + | chr7.2:52112366-52112385 | None:intergenic | 45.0% | |
| ACACGGACATGTGTCTAACA+AGG | + | chr7.2:52113590-52113609 | None:intergenic | 45.0% | |
| AGGGCCTTAGAGATATTTGC+GGG | + | chr7.2:52112293-52112312 | None:intergenic | 45.0% | |
| AGGGGGCTTAGAGATATTTG+GGG | - | chr7.2:52112377-52112396 | MS.gene23212:intron | 45.0% | |
| ATAAAGCCGAGTGAACCAAC+CGG | + | chr7.2:52112235-52112254 | None:intergenic | 45.0% | |
| ATCGTAGAGCAGCTCAAAAG+AGG | - | chr7.2:52112964-52112983 | MS.gene23212:intron | 45.0% | |
| ATTTGTCCCATTTGGCTAGG+GGG | - | chr7.2:52112530-52112549 | MS.gene23212:intron | 45.0% | |
| GAAGCTAAGAAGGTCTCCAA+TGG | - | chr7.2:52112912-52112931 | MS.gene23212:intron | 45.0% | |
| GAGGGCCTTAGAGATATTTG+CGG | + | chr7.2:52112294-52112313 | None:intergenic | 45.0% | |
| GGTCTGCTAGGTATTCTATC+AGG | - | chr7.2:52114012-52114031 | MS.gene23212:intron | 45.0% | |
| GGTGATGCCAAGAAAGTTTG+TGG | - | chr7.2:52112644-52112663 | MS.gene23212:intron | 45.0% | |
| TCTATCAGGATGTGCGCTAA+AGG | - | chr7.2:52114026-52114045 | MS.gene23212:intron | 45.0% | |
| TGAACTCACAAGTGGATGGA+AGG | - | chr7.2:52114058-52114077 | MS.gene23212:intron | 45.0% | |
| ! | ATTCATTTTGCCAGTCCGGT+TGG | - | chr7.2:52112217-52112236 | MS.gene23212:CDS | 45.0% |
| ! | CTACGATTTTCACCATTCGG+AGG | + | chr7.2:52112951-52112970 | None:intergenic | 45.0% |
| ! | TTGGCTTGAAGAAACACGAG+AGG | - | chr7.2:52112005-52112024 | MS.gene23212:CDS | 45.0% |
| !! | AGGTGTTGAATGGGAGAGTT+TGG | - | chr7.2:52113991-52114010 | MS.gene23212:intron | 45.0% |
| !! | TGGATGGAAGGCATTTGCAA+AGG | - | chr7.2:52114070-52114089 | MS.gene23212:intron | 45.0% |
| !! | TTATATAATTCATATTAATA+TGG | - | chr7.2:52112606-52112625 | MS.gene23212:intron | 5.0% |
| ACAAACCCCCCTAGCCAAAT+GGG | + | chr7.2:52112539-52112558 | None:intergenic | 50.0% | |
| AGGCCCCGCAAATATCTCTA+AGG | - | chr7.2:52112286-52112305 | MS.gene23212:intron | 50.0% | |
| ATGGGAGAGTTTGGTCTGCT+AGG | - | chr7.2:52114000-52114019 | MS.gene23212:intron | 50.0% | |
| GGGCCTTAGAGATATTTGCG+GGG | + | chr7.2:52112292-52112311 | None:intergenic | 50.0% | |
| TGCAGCTTACCGGAAGAAAG+TGG | + | chr7.2:52113461-52113480 | None:intergenic | 50.0% | |
| TTTGTCCCATTTGGCTAGGG+GGG | - | chr7.2:52112531-52112550 | MS.gene23212:intron | 50.0% | |
| ! | GAGCATCACTCTCTAGCTCA+TGG | - | chr7.2:52112792-52112811 | MS.gene23212:CDS | 50.0% |
| CACAAACCCCCCTAGCCAAA+TGG | + | chr7.2:52112540-52112559 | None:intergenic | 55.0% | |
| GGGCTTAGCCAAACCCAAAC+TGG | - | chr7.2:52112468-52112487 | MS.gene23212:intron | 55.0% | |
| TTTGGCTAGGGGGGTTTGTG+TGG | - | chr7.2:52112540-52112559 | MS.gene23212:intron | 55.0% | |
| ! | GCCAGTCCGGTTGGTTCACT+CGG | - | chr7.2:52112226-52112245 | MS.gene23212:CDS | 60.0% |
| GCCGAGTGAACCAACCGGAC+TGG | + | chr7.2:52112230-52112249 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 52111846 | 52114340 | 52111846 | ID=MS.gene23212 |
| chr7.2 | mRNA | 52111846 | 52114340 | 52111846 | ID=MS.gene23212.t1;Parent=MS.gene23212 |
| chr7.2 | exon | 52114260 | 52114340 | 52114260 | ID=MS.gene23212.t1.exon1;Parent=MS.gene23212.t1 |
| chr7.2 | CDS | 52114260 | 52114340 | 52114260 | ID=cds.MS.gene23212.t1;Parent=MS.gene23212.t1 |
| chr7.2 | exon | 52113088 | 52113541 | 52113088 | ID=MS.gene23212.t1.exon2;Parent=MS.gene23212.t1 |
| chr7.2 | CDS | 52113088 | 52113541 | 52113088 | ID=cds.MS.gene23212.t1;Parent=MS.gene23212.t1 |
| chr7.2 | exon | 52112716 | 52112840 | 52112716 | ID=MS.gene23212.t1.exon3;Parent=MS.gene23212.t1 |
| chr7.2 | CDS | 52112716 | 52112840 | 52112716 | ID=cds.MS.gene23212.t1;Parent=MS.gene23212.t1 |
| chr7.2 | exon | 52111971 | 52112262 | 52111971 | ID=MS.gene23212.t1.exon4;Parent=MS.gene23212.t1 |
| chr7.2 | CDS | 52111971 | 52112262 | 52111971 | ID=cds.MS.gene23212.t1;Parent=MS.gene23212.t1 |
| chr7.2 | exon | 52111846 | 52111886 | 52111846 | ID=MS.gene23212.t1.exon5;Parent=MS.gene23212.t1 |
| chr7.2 | CDS | 52111846 | 52111886 | 52111846 | ID=cds.MS.gene23212.t1;Parent=MS.gene23212.t1 |
| Gene Sequence |
| Protein sequence |
