Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23215.t1 | ABD32483.2 | 79.8 | 321 | 62 | 2 | 1 | 318 | 6 | 326 | 7.80E-139 | 503.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23215.t1 | Q8L3W1 | 27.5 | 338 | 192 | 6 | 13 | 304 | 6 | 336 | 1.1e-24 | 115.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23215.t1 | Q2HSK0 | 79.8 | 321 | 62 | 2 | 1 | 318 | 6 | 326 | 5.6e-139 | 503.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene23215.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23215.t1 | MTR_7g050710 | 79.751 | 321 | 62 | 2 | 1 | 318 | 1 | 321 | 0.0 | 522 |
| MS.gene23215.t1 | MTR_3g098790 | 69.906 | 319 | 89 | 2 | 1 | 318 | 1 | 313 | 1.18e-158 | 447 |
| MS.gene23215.t1 | MTR_7g050580 | 71.646 | 328 | 79 | 3 | 1 | 328 | 1 | 314 | 8.80e-158 | 444 |
| MS.gene23215.t1 | MTR_7g050560 | 66.061 | 330 | 94 | 4 | 1 | 328 | 1 | 314 | 6.04e-150 | 424 |
| MS.gene23215.t1 | MTR_7g050590 | 71.622 | 296 | 77 | 5 | 28 | 318 | 1 | 294 | 1.44e-148 | 420 |
| MS.gene23215.t1 | MTR_7g050720 | 57.188 | 313 | 120 | 7 | 7 | 305 | 4 | 316 | 2.54e-113 | 331 |
| MS.gene23215.t1 | MTR_8g103940 | 35.691 | 311 | 167 | 7 | 11 | 304 | 37 | 331 | 1.36e-51 | 178 |
| MS.gene23215.t1 | MTR_1g108780 | 34.219 | 301 | 169 | 9 | 21 | 307 | 8 | 293 | 9.48e-47 | 164 |
| MS.gene23215.t1 | MTR_7g050640 | 64.151 | 106 | 38 | 0 | 1 | 106 | 1 | 106 | 7.11e-43 | 144 |
| MS.gene23215.t1 | MTR_1g035460 | 33.115 | 305 | 172 | 8 | 28 | 311 | 1 | 294 | 1.71e-42 | 151 |
| MS.gene23215.t1 | MTR_5g044670 | 31.746 | 315 | 191 | 8 | 13 | 318 | 16 | 315 | 2.44e-42 | 149 |
| MS.gene23215.t1 | MTR_3g061350 | 33.441 | 311 | 172 | 13 | 1 | 303 | 1 | 284 | 1.15e-38 | 139 |
| MS.gene23215.t1 | MTR_3g061370 | 32.143 | 308 | 173 | 11 | 5 | 303 | 1 | 281 | 1.71e-38 | 138 |
| MS.gene23215.t1 | MTR_3g061320 | 31.579 | 304 | 165 | 11 | 10 | 303 | 9 | 279 | 4.63e-37 | 134 |
| MS.gene23215.t1 | MTR_3g061310 | 30.619 | 307 | 170 | 11 | 10 | 303 | 9 | 285 | 9.52e-37 | 134 |
| MS.gene23215.t1 | MTR_1g035620 | 32.895 | 304 | 161 | 10 | 10 | 302 | 6 | 277 | 5.05e-35 | 132 |
| MS.gene23215.t1 | MTR_3g061340 | 30.719 | 306 | 160 | 9 | 10 | 303 | 9 | 274 | 5.60e-35 | 129 |
| MS.gene23215.t1 | MTR_6g043890 | 33.677 | 291 | 170 | 8 | 11 | 290 | 13 | 291 | 2.26e-34 | 129 |
| MS.gene23215.t1 | MTR_1g035640 | 32.215 | 298 | 166 | 10 | 13 | 302 | 9 | 278 | 2.42e-32 | 125 |
| MS.gene23215.t1 | MTR_1g050845 | 33.224 | 304 | 148 | 11 | 10 | 302 | 6 | 265 | 1.63e-31 | 125 |
| MS.gene23215.t1 | MTR_3g061290 | 53.398 | 103 | 46 | 1 | 10 | 112 | 9 | 109 | 2.21e-31 | 117 |
| MS.gene23215.t1 | MTR_3g061330 | 51.456 | 103 | 48 | 1 | 10 | 112 | 9 | 109 | 2.17e-30 | 116 |
| MS.gene23215.t1 | MTR_1g035570 | 31.148 | 305 | 171 | 9 | 13 | 304 | 9 | 287 | 1.69e-28 | 114 |
| MS.gene23215.t1 | MTR_4g119990 | 30.449 | 312 | 201 | 10 | 11 | 311 | 13 | 319 | 3.63e-28 | 112 |
| MS.gene23215.t1 | MTR_3g005490 | 25.329 | 304 | 158 | 5 | 12 | 307 | 20 | 262 | 2.51e-27 | 108 |
| MS.gene23215.t1 | MTR_3g005480 | 25.000 | 312 | 164 | 6 | 5 | 307 | 13 | 263 | 1.25e-26 | 106 |
| MS.gene23215.t1 | MTR_5g070440 | 26.316 | 304 | 164 | 7 | 12 | 307 | 20 | 271 | 4.12e-25 | 102 |
| MS.gene23215.t1 | MTR_1g021400 | 25.360 | 347 | 200 | 8 | 11 | 312 | 28 | 360 | 5.18e-25 | 103 |
| MS.gene23215.t1 | MTR_6g061070 | 28.527 | 319 | 199 | 10 | 6 | 303 | 11 | 321 | 2.12e-24 | 103 |
| MS.gene23215.t1 | MTR_1g021360 | 27.797 | 295 | 190 | 8 | 11 | 296 | 182 | 462 | 5.84e-24 | 102 |
| MS.gene23215.t1 | MTR_1g021360 | 25.357 | 280 | 159 | 8 | 14 | 289 | 26 | 259 | 1.73e-12 | 68.2 |
| MS.gene23215.t1 | MTR_3g005420 | 27.632 | 304 | 174 | 9 | 4 | 307 | 282 | 539 | 2.41e-23 | 100 |
| MS.gene23215.t1 | MTR_3g005420 | 23.675 | 283 | 145 | 8 | 12 | 291 | 39 | 253 | 2.11e-14 | 74.3 |
| MS.gene23215.t1 | MTR_3g005460 | 25.902 | 305 | 166 | 9 | 11 | 303 | 260 | 516 | 2.17e-22 | 97.8 |
| MS.gene23215.t1 | MTR_3g005460 | 31.967 | 122 | 79 | 1 | 6 | 127 | 18 | 135 | 2.66e-16 | 80.1 |
| MS.gene23215.t1 | MTR_3g061220 | 42.718 | 103 | 44 | 2 | 10 | 112 | 9 | 96 | 1.93e-21 | 88.2 |
| MS.gene23215.t1 | MTR_1g021330 | 25.000 | 332 | 200 | 6 | 11 | 296 | 24 | 352 | 7.12e-21 | 92.4 |
| MS.gene23215.t1 | MTR_1g021410 | 23.373 | 338 | 198 | 8 | 11 | 303 | 21 | 342 | 8.35e-21 | 92.0 |
| MS.gene23215.t1 | MTR_1g035650 | 32.407 | 216 | 122 | 7 | 10 | 219 | 6 | 203 | 3.34e-20 | 87.4 |
| MS.gene23215.t1 | MTR_4g068320 | 39.394 | 99 | 60 | 0 | 13 | 111 | 6 | 104 | 6.66e-20 | 90.1 |
| MS.gene23215.t1 | MTR_4g068320 | 32.812 | 128 | 80 | 2 | 177 | 304 | 267 | 388 | 7.33e-14 | 72.4 |
| MS.gene23215.t1 | MTR_1g021270 | 24.633 | 341 | 197 | 7 | 8 | 296 | 11 | 343 | 1.19e-19 | 90.1 |
| MS.gene23215.t1 | MTR_1g034240 | 40.404 | 99 | 59 | 0 | 13 | 111 | 7 | 105 | 1.35e-19 | 89.4 |
| MS.gene23215.t1 | MTR_1g034240 | 31.788 | 151 | 93 | 3 | 177 | 323 | 271 | 415 | 1.55e-15 | 77.4 |
| MS.gene23215.t1 | MTR_1g021380 | 23.263 | 331 | 215 | 8 | 11 | 312 | 20 | 340 | 2.62e-18 | 84.7 |
| MS.gene23215.t1 | MTR_1g035480 | 39.655 | 116 | 67 | 2 | 8 | 123 | 12 | 124 | 3.90e-18 | 81.3 |
| MS.gene23215.t1 | MTR_3g005495 | 26.370 | 292 | 153 | 6 | 4 | 295 | 236 | 465 | 4.06e-18 | 85.1 |
| MS.gene23215.t1 | MTR_3g005495 | 32.323 | 99 | 63 | 1 | 29 | 127 | 29 | 123 | 1.18e-14 | 74.7 |
| MS.gene23215.t1 | MTR_1g021435 | 22.714 | 339 | 209 | 7 | 11 | 302 | 20 | 352 | 1.87e-17 | 82.8 |
| MS.gene23215.t1 | MTR_1g021350 | 27.476 | 313 | 183 | 14 | 11 | 296 | 20 | 315 | 1.62e-16 | 79.7 |
| MS.gene23215.t1 | MTR_1g035500 | 36.441 | 118 | 72 | 2 | 6 | 123 | 18 | 132 | 3.95e-16 | 75.9 |
| MS.gene23215.t1 | MTR_1g033740 | 36.441 | 118 | 72 | 2 | 6 | 123 | 15 | 129 | 8.51e-16 | 75.1 |
| MS.gene23215.t1 | MTR_1g035520 | 27.358 | 318 | 189 | 12 | 17 | 302 | 75 | 382 | 8.90e-16 | 77.8 |
| MS.gene23215.t1 | MTR_1g035440 | 40.000 | 105 | 62 | 1 | 11 | 114 | 13 | 117 | 1.02e-15 | 75.9 |
| MS.gene23215.t1 | MTR_3g005440 | 32.110 | 109 | 71 | 1 | 29 | 137 | 36 | 141 | 4.05e-15 | 76.3 |
| MS.gene23215.t1 | MTR_3g005440 | 32.203 | 118 | 80 | 0 | 12 | 129 | 241 | 358 | 6.60e-13 | 69.3 |
| MS.gene23215.t1 | MTR_1g034210 | 35.294 | 102 | 66 | 0 | 13 | 114 | 7 | 108 | 4.91e-15 | 75.1 |
| MS.gene23215.t1 | MTR_1g034210 | 35.294 | 102 | 66 | 0 | 13 | 114 | 7 | 108 | 8.32e-15 | 74.7 |
| MS.gene23215.t1 | MTR_3g005420 | 23.675 | 283 | 145 | 8 | 12 | 291 | 20 | 234 | 2.21e-14 | 73.9 |
| MS.gene23215.t1 | MTR_1g021320 | 35.870 | 92 | 59 | 0 | 11 | 102 | 23 | 114 | 3.99e-14 | 73.6 |
| MS.gene23215.t1 | MTR_1g021320 | 36.364 | 99 | 60 | 3 | 11 | 108 | 182 | 278 | 7.82e-13 | 69.7 |
| MS.gene23215.t1 | MTR_1g021440 | 35.870 | 92 | 58 | 1 | 11 | 102 | 21 | 111 | 8.43e-14 | 70.9 |
| MS.gene23215.t1 | MTR_1g021440 | 35.870 | 92 | 58 | 1 | 11 | 102 | 21 | 111 | 9.13e-14 | 71.2 |
| MS.gene23215.t1 | MTR_1g021440 | 35.870 | 92 | 58 | 1 | 11 | 102 | 21 | 111 | 1.39e-13 | 71.2 |
| MS.gene23215.t1 | MTR_1g021440 | 35.870 | 92 | 58 | 1 | 11 | 102 | 21 | 111 | 1.50e-13 | 71.2 |
| MS.gene23215.t1 | MTR_1g035510 | 26.829 | 246 | 131 | 11 | 28 | 251 | 1 | 219 | 2.58e-13 | 68.6 |
| MS.gene23215.t1 | MTR_1g021290 | 28.947 | 114 | 78 | 1 | 17 | 127 | 159 | 272 | 2.14e-12 | 67.4 |
| MS.gene23215.t1 | MTR_1g021290 | 30.400 | 125 | 76 | 4 | 11 | 132 | 26 | 142 | 9.54e-12 | 65.5 |
| MS.gene23215.t1 | MTR_1g035490 | 36.667 | 120 | 69 | 4 | 187 | 304 | 82 | 196 | 3.90e-12 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23215.t1 | AT3G18990 | 27.219 | 338 | 193 | 8 | 13 | 304 | 6 | 336 | 1.16e-28 | 113 |
| MS.gene23215.t1 | AT3G18990 | 44.444 | 99 | 55 | 0 | 13 | 111 | 6 | 104 | 4.19e-22 | 95.9 |
| MS.gene23215.t1 | AT4G33280 | 26.727 | 333 | 188 | 11 | 12 | 312 | 19 | 327 | 8.83e-22 | 94.7 |
| MS.gene23215.t1 | AT4G01580 | 40.385 | 104 | 62 | 0 | 13 | 116 | 30 | 133 | 3.21e-20 | 87.0 |
| MS.gene23215.t1 | AT1G49475 | 38.889 | 108 | 65 | 1 | 13 | 120 | 34 | 140 | 4.31e-20 | 87.0 |
| MS.gene23215.t1 | AT3G18960 | 39.423 | 104 | 63 | 0 | 13 | 116 | 30 | 133 | 3.09e-19 | 85.1 |
| MS.gene23215.t1 | AT3G18960 | 39.423 | 104 | 63 | 0 | 13 | 116 | 30 | 133 | 3.14e-19 | 84.7 |
| MS.gene23215.t1 | AT3G18960 | 42.045 | 88 | 51 | 0 | 29 | 116 | 9 | 96 | 2.24e-16 | 76.3 |
| MS.gene23215.t1 | AT3G53310 | 32.692 | 104 | 67 | 3 | 1 | 104 | 1 | 101 | 2.63e-11 | 63.9 |
| MS.gene23215.t1 | AT4G33280 | 34.000 | 100 | 62 | 2 | 12 | 107 | 19 | 118 | 4.51e-11 | 63.9 |
Find 52 sgRNAs with CRISPR-Local
Find 151 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGATTTGTACCTCAAATT+TGG | 0.180864 | 7.2:+52136319 | None:intergenic |
| TGCAAAATGGAAATTAAATT+TGG | 0.194062 | 7.2:-52136447 | MS.gene23215:CDS |
| TTTCATCAACAATGTGAAAT+TGG | 0.209794 | 7.2:-52136158 | MS.gene23215:CDS |
| GAGAGGAAATATTCAATTTC+AGG | 0.223030 | 7.2:-52135195 | MS.gene23215:CDS |
| AAATTTGAGGTACAAATCTT+TGG | 0.253897 | 7.2:-52136317 | MS.gene23215:CDS |
| GAGTAGCTTCTCCTTTCATT+TGG | 0.324351 | 7.2:+52134859 | None:intergenic |
| GTCTCTACACGTATAGCTTT+TGG | 0.333922 | 7.2:+52136479 | None:intergenic |
| AGTAGCTTCTCCTTTCATTT+GGG | 0.353063 | 7.2:+52134860 | None:intergenic |
| AGGTGTTGAATGGGAGAGTT+TGG | 0.369308 | 7.2:-52135175 | MS.gene23215:CDS |
| AGACTCCAAATGGTGCAAAA+TGG | 0.405129 | 7.2:-52136460 | MS.gene23215:CDS |
| ATTCAATTTCAGGTGTTGAA+TGG | 0.405726 | 7.2:-52135185 | MS.gene23215:CDS |
| TGTTGAACACCACTTTCTTC+CGG | 0.410959 | 7.2:-52135717 | MS.gene23215:intron |
| TTCAATTTCAGGTGTTGAAT+GGG | 0.413248 | 7.2:-52135184 | MS.gene23215:CDS |
| AATCTTTGGAAAGAGTGCTT+TGG | 0.429279 | 7.2:-52136303 | MS.gene23215:CDS |
| GGTCTGCTAGGTATTCTATC+AGG | 0.438342 | 7.2:-52135154 | MS.gene23215:CDS |
| AAAGGCTTACAAGCTTTCCT+TGG | 0.438493 | 7.2:+52137252 | None:intergenic |
| AGATATGGTTTGAGAAGGGT+TGG | 0.481735 | 7.2:-52136409 | MS.gene23215:CDS |
| GGTGATGCCAAGAAAGTTTG+TGG | 0.482121 | 7.2:-52136522 | MS.gene23215:CDS |
| TCTATCAGGATGTGCGCTAA+AGG | 0.492186 | 7.2:-52135140 | MS.gene23215:CDS |
| AAGGACAATAACTTGAAAGT+TGG | 0.499244 | 7.2:-52135077 | MS.gene23215:CDS |
| ATCGTAGAGCAGCTCAAAAG+AGG | 0.502355 | 7.2:-52136202 | MS.gene23215:CDS |
| AGGTTTATTTCCTTGACCAT+TGG | 0.505200 | 7.2:+52136238 | None:intergenic |
| ATGGGAGAGTTTGGTCTGCT+AGG | 0.505527 | 7.2:-52135166 | MS.gene23215:CDS |
| TTACAAGCTTTCCTTGGAGA+AGG | 0.524389 | 7.2:+52137258 | None:intergenic |
| TCTAAAGATATGAACAATGA+AGG | 0.545794 | 7.2:+52135013 | None:intergenic |
| TGGCAAGATATGGTTTGAGA+AGG | 0.555350 | 7.2:-52136414 | MS.gene23215:CDS |
| TGTAAAACATGGAAAATCAC+AGG | 0.559700 | 7.2:-52136123 | MS.gene23215:CDS |
| CTAAAATTTGAACTCACAAG+TGG | 0.566527 | 7.2:-52135116 | MS.gene23215:CDS |
| TGAACTCACAAGTGGATGGA+AGG | 0.567593 | 7.2:-52135108 | MS.gene23215:CDS |
| GCAGATTCTTCCCAAATGAA+AGG | 0.569807 | 7.2:-52134870 | MS.gene23215:intron |
| CTCATGACAACAACAAAGGA+TGG | 0.571041 | 7.2:+52135749 | None:intergenic |
| GAGCATCACTCTCTAGCTCA+TGG | 0.577825 | 7.2:-52136374 | MS.gene23215:CDS |
| ACATTGTTGATGAAATTCAA+AGG | 0.586074 | 7.2:+52136166 | None:intergenic |
| TTTGATTTGAATAAGAAGAG+AGG | 0.586918 | 7.2:-52135212 | MS.gene23215:CDS |
| TGCAGCTTACCGGAAGAAAG+TGG | 0.589285 | 7.2:+52135708 | None:intergenic |
| CATTGTTCATATCTTTAGAG+AGG | 0.592333 | 7.2:-52135009 | MS.gene23215:CDS |
| AGCAGTAGTTGTGTAAAACA+TGG | 0.593692 | 7.2:-52136134 | MS.gene23215:CDS |
| ATACGTGTAGAGACTCCAAA+TGG | 0.596036 | 7.2:-52136470 | MS.gene23215:CDS |
| AATTTGAACTCACAAGTGGA+TGG | 0.599548 | 7.2:-52135112 | MS.gene23215:CDS |
| AAGAAGGTCTCCAATGGTCA+AGG | 0.600566 | 7.2:-52136248 | MS.gene23215:CDS |
| GGCAAGATATGGTTTGAGAA+GGG | 0.606783 | 7.2:-52136413 | MS.gene23215:CDS |
| CTTACTGAAAACCTTCTCCA+AGG | 0.626110 | 7.2:-52137269 | MS.gene23215:CDS |
| TGGATGGAAGGCATTTGCAA+AGG | 0.640290 | 7.2:-52135096 | MS.gene23215:CDS |
| TGTGTCTTACAAAACAAGGA+TGG | 0.644962 | 7.2:+52135236 | None:intergenic |
| CAAATTGATAGAATGTCCAA+AGG | 0.647085 | 7.2:-52136089 | MS.gene23215:intron |
| AAAGTGTGTCTTACAAAACA+AGG | 0.647663 | 7.2:+52135232 | None:intergenic |
| CAAGGAAATAAACCTCCGAA+TGG | 0.648381 | 7.2:-52136230 | MS.gene23215:CDS |
| GAAGCTAAGAAGGTCTCCAA+TGG | 0.650536 | 7.2:-52136254 | MS.gene23215:CDS |
| TGCACTCATGACAACAACAA+AGG | 0.665197 | 7.2:+52135745 | None:intergenic |
| AAAACATGGAAAATCACAGG+TGG | 0.684763 | 7.2:-52136120 | MS.gene23215:CDS |
| TTGTTGATGAAATTCAAAGG+AGG | 0.689383 | 7.2:+52136169 | None:intergenic |
| CATGGCTAGTGAGATTGCTG+AGG | 0.696319 | 7.2:-52137321 | MS.gene23215:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATTAACTGAAATATTAT+AGG | - | chr7.2:52136779-52136798 | MS.gene23215:intron | 10.0% |
| !!! | AAATTATTTTACATTACTTT+AGG | + | chr7.2:52135582-52135601 | None:intergenic | 10.0% |
| !!! | ATATTATCATTTTTATTTTC+TGG | - | chr7.2:52136185-52136204 | MS.gene23215:CDS | 10.0% |
| !! | AATAAATAAAATTTCTCTCT+AGG | + | chr7.2:52135405-52135424 | None:intergenic | 15.0% |
| !! | AGTTATTTATTTGTATTAGA+GGG | + | chr7.2:52135314-52135333 | None:intergenic | 15.0% |
| !! | ATTAGAATAACTTAATTAGT+TGG | - | chr7.2:52136243-52136262 | MS.gene23215:CDS | 15.0% |
| !! | ATTATTGAAATTATTACACT+TGG | - | chr7.2:52136649-52136668 | MS.gene23215:intron | 15.0% |
| !! | TCACATAAACATTTATAATA+TGG | + | chr7.2:52135074-52135093 | None:intergenic | 15.0% |
| !!! | AGATTACTTGTTAAAAATTT+GGG | - | chr7.2:52135450-52135469 | MS.gene23215:intron | 15.0% |
| !!! | ATGTTATTTATGTTTGTATT+TGG | - | chr7.2:52134988-52135007 | MS.gene23215:CDS | 15.0% |
| !!! | GGTGTTTTTATTTTTATTTT+TGG | + | chr7.2:52136860-52136879 | None:intergenic | 15.0% |
| !!! | TAGATTACTTGTTAAAAATT+TGG | - | chr7.2:52135449-52135468 | MS.gene23215:intron | 15.0% |
| !! | AACAACAACAAATAATCTAA+AGG | + | chr7.2:52134937-52134956 | None:intergenic | 20.0% |
| !! | ATCAATTGTTCATGTAATTT+AGG | + | chr7.2:52135201-52135220 | None:intergenic | 20.0% |
| !! | ATTGTTTAACATTTCAAAGT+AGG | - | chr7.2:52137200-52137219 | MS.gene23215:intron | 20.0% |
| !! | ATTTATAATATGGCATCATA+AGG | + | chr7.2:52135064-52135083 | None:intergenic | 20.0% |
| !! | GAGTTATTTATTTGTATTAG+AGG | + | chr7.2:52135315-52135334 | None:intergenic | 20.0% |
| !! | GATGTTAAAAAGATCATATA+TGG | + | chr7.2:52136545-52136564 | None:intergenic | 20.0% |
| !! | TGCAAAATGGAAATTAAATT+TGG | - | chr7.2:52135721-52135740 | MS.gene23215:CDS | 20.0% |
| !! | TTAAATTTGGTAAAAAGTGA+TGG | - | chr7.2:52135734-52135753 | MS.gene23215:CDS | 20.0% |
| !!! | AACTCTAAATTTGAAATTAC+TGG | + | chr7.2:52135113-52135132 | None:intergenic | 20.0% |
| !!! | CATTTACATTTTCTATTGTT+TGG | - | chr7.2:52136900-52136919 | MS.gene23215:intron | 20.0% |
| !!! | TTTTAAGAACGTTTCTTTTT+AGG | - | chr7.2:52135268-52135287 | MS.gene23215:intron | 20.0% |
| ! | AAAGATTTGTACCTCAAATT+TGG | + | chr7.2:52135852-52135871 | None:intergenic | 25.0% |
| ! | AGAAAGTTTGTGGAAAAATA+TGG | - | chr7.2:52135656-52135675 | MS.gene23215:intron | 25.0% |
| ! | ATATGGTGTAATTAATTGAC+AGG | - | chr7.2:52135625-52135644 | MS.gene23215:intron | 25.0% |
| ! | ATATTTGACGATAATCTTCA+AGG | + | chr7.2:52136301-52136320 | None:intergenic | 25.0% |
| ! | GTTAAAAAGATCATATATGG+TGG | + | chr7.2:52136542-52136561 | None:intergenic | 25.0% |
| ! | TCTAAAGATATGAACAATGA+AGG | + | chr7.2:52137158-52137177 | None:intergenic | 25.0% |
| ! | TGAAAAAACTTCCAAATTTG+AGG | - | chr7.2:52135838-52135857 | MS.gene23215:intron | 25.0% |
| ! | TTTATTCAATTTGTCCCATT+TGG | - | chr7.2:52135524-52135543 | MS.gene23215:intron | 25.0% |
| ! | TTTCATCAACAATGTGAAAT+TGG | - | chr7.2:52136010-52136029 | MS.gene23215:intron | 25.0% |
| ! | TTTGTGGAAAAATATGGAAA+AGG | - | chr7.2:52135662-52135681 | MS.gene23215:intron | 25.0% |
| !! | AAATTTGAGGTACAAATCTT+TGG | - | chr7.2:52135851-52135870 | MS.gene23215:intron | 25.0% |
| !! | ACATTGTTGATGAAATTCAA+AGG | + | chr7.2:52136005-52136024 | None:intergenic | 25.0% |
| !! | TACATTACTTTAGGAAATAC+TGG | + | chr7.2:52135573-52135592 | None:intergenic | 25.0% |
| !! | TATTTTTCCACAAACTTTCT+TGG | + | chr7.2:52135656-52135675 | None:intergenic | 25.0% |
| !! | TGCAAAATTGGAACATTTTA+AGG | + | chr7.2:52136327-52136346 | None:intergenic | 25.0% |
| !! | TTAAAATGTTCCAATTTTGC+AGG | - | chr7.2:52136326-52136345 | MS.gene23215:CDS | 25.0% |
| !!! | AAATTACTGGTTTTACTGTT+AGG | + | chr7.2:52135100-52135119 | None:intergenic | 25.0% |
| !!! | GGAAATTTTTTTATTGCTGT+TGG | + | chr7.2:52136521-52136540 | None:intergenic | 25.0% |
| !!! | TTTGATTTGAATAAGAAGAG+AGG | - | chr7.2:52136956-52136975 | MS.gene23215:intron | 25.0% |
| AAAGTGTGTCTTACAAAACA+AGG | + | chr7.2:52136939-52136958 | None:intergenic | 30.0% | |
| AACTACCTGATGAGTATTTA+GGG | - | chr7.2:52135360-52135379 | MS.gene23215:intron | 30.0% | |
| AAGGACAATAACTTGAAAGT+TGG | - | chr7.2:52137091-52137110 | MS.gene23215:intron | 30.0% | |
| ATGATCTTGAAAAAGTGGAT+TGG | + | chr7.2:52134878-52134897 | None:intergenic | 30.0% | |
| CAAAAAAGTTGAAGCTAAGA+AGG | - | chr7.2:52135904-52135923 | MS.gene23215:intron | 30.0% | |
| CAAATTGATAGAATGTCCAA+AGG | - | chr7.2:52136079-52136098 | MS.gene23215:intron | 30.0% | |
| CTAAAATTTGAACTCACAAG+TGG | - | chr7.2:52137052-52137071 | MS.gene23215:intron | 30.0% | |
| CTCCTGTAATAAACATAATC+CGG | - | chr7.2:52135332-52135351 | MS.gene23215:intron | 30.0% | |
| GAGAGGAAATATTCAATTTC+AGG | - | chr7.2:52136973-52136992 | MS.gene23215:intron | 30.0% | |
| GTAATCACATGTGTCAATAT+CGG | + | chr7.2:52136615-52136634 | None:intergenic | 30.0% | |
| TAAAAAGTGATGGCAAGATA+TGG | - | chr7.2:52135744-52135763 | MS.gene23215:CDS | 30.0% | |
| TAACTACCTGATGAGTATTT+AGG | - | chr7.2:52135359-52135378 | MS.gene23215:intron | 30.0% | |
| TAAGGATGATCTTGAAAAAG+TGG | + | chr7.2:52134883-52134902 | None:intergenic | 30.0% | |
| TACCGGATTATGTTTATTAC+AGG | + | chr7.2:52135337-52135356 | None:intergenic | 30.0% | |
| TGTAAAACATGGAAAATCAC+AGG | - | chr7.2:52136045-52136064 | MS.gene23215:intron | 30.0% | |
| ! | AATTTCCATTTTGCACCATT+TGG | + | chr7.2:52135716-52135735 | None:intergenic | 30.0% |
| ! | ATCAATTTTACCGTGACAAT+TGG | + | chr7.2:52136719-52136738 | None:intergenic | 30.0% |
| ! | ATGTTGATGAATGAAAAGAC+TGG | + | chr7.2:52136883-52136902 | None:intergenic | 30.0% |
| ! | CATTGTTCATATCTTTAGAG+AGG | - | chr7.2:52137159-52137178 | MS.gene23215:intron | 30.0% |
| ! | TGAAATAGAGCTGTCAATTT+TGG | - | chr7.2:52135154-52135173 | MS.gene23215:CDS | 30.0% |
| ! | TGTTGATGAATGAAAAGACT+GGG | + | chr7.2:52136882-52136901 | None:intergenic | 30.0% |
| ! | TTGTTGATGAAATTCAAAGG+AGG | + | chr7.2:52136002-52136021 | None:intergenic | 30.0% |
| !! | AACTTGTTTTCCTGCAAAAT+TGG | + | chr7.2:52136339-52136358 | None:intergenic | 30.0% |
| !! | ATTCAATTTCAGGTGTTGAA+TGG | - | chr7.2:52136983-52137002 | MS.gene23215:intron | 30.0% |
| !! | TCAATTTTGGTCAAACCTAA+TGG | - | chr7.2:52135167-52135186 | MS.gene23215:CDS | 30.0% |
| !! | TTCAATTTCAGGTGTTGAAT+GGG | - | chr7.2:52136984-52137003 | MS.gene23215:intron | 30.0% |
| !! | TTTTTGGTGATCAAAAGACT+GGG | + | chr7.2:52136844-52136863 | None:intergenic | 30.0% |
| !!! | ATTTTTGGTGATCAAAAGAC+TGG | + | chr7.2:52136845-52136864 | None:intergenic | 30.0% |
| AAAACATGGAAAATCACAGG+TGG | - | chr7.2:52136048-52136067 | MS.gene23215:intron | 35.0% | |
| AATGTTTCTTTGCAGCTTAC+CGG | + | chr7.2:52136473-52136492 | None:intergenic | 35.0% | |
| AATTTGAACTCACAAGTGGA+TGG | - | chr7.2:52137056-52137075 | MS.gene23215:intron | 35.0% | |
| ACTACCTGATGAGTATTTAG+GGG | - | chr7.2:52135361-52135380 | MS.gene23215:intron | 35.0% | |
| AGCAGTAGTTGTGTAAAACA+TGG | - | chr7.2:52136034-52136053 | MS.gene23215:intron | 35.0% | |
| AGGTTTATTTCCTTGACCAT+TGG | + | chr7.2:52135933-52135952 | None:intergenic | 35.0% | |
| AGTAGCTTCTCCTTTCATTT+GGG | + | chr7.2:52137311-52137330 | None:intergenic | 35.0% | |
| CATTATGTAGCCAATTGTCA+CGG | - | chr7.2:52136706-52136725 | MS.gene23215:intron | 35.0% | |
| GACGTAAAATCGTATACCTT+TGG | + | chr7.2:52136098-52136117 | None:intergenic | 35.0% | |
| GTAAGCTGCAAAGAAACATT+TGG | - | chr7.2:52136473-52136492 | MS.gene23215:CDS | 35.0% | |
| TGACAATTGGCTACATAATG+TGG | + | chr7.2:52136706-52136725 | None:intergenic | 35.0% | |
| TGTGTCTTACAAAACAAGGA+TGG | + | chr7.2:52136935-52136954 | None:intergenic | 35.0% | |
| ! | GTTGATGAATGAAAAGACTG+GGG | + | chr7.2:52136881-52136900 | None:intergenic | 35.0% |
| !! | AATCTTTGGAAAGAGTGCTT+TGG | - | chr7.2:52135865-52135884 | MS.gene23215:intron | 35.0% |
| !! | ATTGATTCATTTTGCCAGTC+CGG | - | chr7.2:52135215-52135234 | MS.gene23215:CDS | 35.0% |
| AAAGGCTTACAAGCTTTCCT+TGG | + | chr7.2:52134919-52134938 | None:intergenic | 40.0% | |
| AATTTGTCCCATTTGGCTAG+GGG | - | chr7.2:52135531-52135550 | MS.gene23215:intron | 40.0% | |
| ACATCAACACTTACGATCGA+AGG | - | chr7.2:52136560-52136579 | MS.gene23215:intron | 40.0% | |
| ACATGTGTCAATATCGGACA+CGG | + | chr7.2:52136609-52136628 | None:intergenic | 40.0% | |
| AGACTCCAAATGGTGCAAAA+TGG | - | chr7.2:52135708-52135727 | MS.gene23215:intron | 40.0% | |
| AGATATGGTTTGAGAAGGGT+TGG | - | chr7.2:52135759-52135778 | MS.gene23215:CDS | 40.0% | |
| AGCCTAAAACACACCAGTTT+GGG | + | chr7.2:52135486-52135505 | None:intergenic | 40.0% | |
| ATACGTGTAGAGACTCCAAA+TGG | - | chr7.2:52135698-52135717 | MS.gene23215:intron | 40.0% | |
| CAAGGAAATAAACCTCCGAA+TGG | - | chr7.2:52135938-52135957 | MS.gene23215:intron | 40.0% | |
| CAATTTGTCCCATTTGGCTA+GGG | - | chr7.2:52135530-52135549 | MS.gene23215:intron | 40.0% | |
| CTACCTGATGAGTATTTAGG+GGG | - | chr7.2:52135362-52135381 | MS.gene23215:intron | 40.0% | |
| CTCATCAGGTAGTTATCTAC+CGG | + | chr7.2:52135354-52135373 | None:intergenic | 40.0% | |
| CTCATGACAACAACAAAGGA+TGG | + | chr7.2:52136422-52136441 | None:intergenic | 40.0% | |
| CTTACTGAAAACCTTCTCCA+AGG | - | chr7.2:52134899-52134918 | MS.gene23215:intron | 40.0% | |
| GAGTAGCTTCTCCTTTCATT+TGG | + | chr7.2:52137312-52137331 | None:intergenic | 40.0% | |
| GCAGATTCTTCCCAAATGAA+AGG | - | chr7.2:52137298-52137317 | MS.gene23215:CDS | 40.0% | |
| GGCAAGATATGGTTTGAGAA+GGG | - | chr7.2:52135755-52135774 | MS.gene23215:CDS | 40.0% | |
| TACGTCTTCTTCATTGTGTC+AGG | - | chr7.2:52136112-52136131 | MS.gene23215:CDS | 40.0% | |
| TAGCCTAAAACACACCAGTT+TGG | + | chr7.2:52135487-52135506 | None:intergenic | 40.0% | |
| TAGGGGGCTTAGAGATATTT+GGG | - | chr7.2:52135378-52135397 | MS.gene23215:intron | 40.0% | |
| TCAATTTGTCCCATTTGGCT+AGG | - | chr7.2:52135529-52135548 | MS.gene23215:intron | 40.0% | |
| TGCACTCATGACAACAACAA+AGG | + | chr7.2:52136426-52136445 | None:intergenic | 40.0% | |
| TGGCAAGATATGGTTTGAGA+AGG | - | chr7.2:52135754-52135773 | MS.gene23215:CDS | 40.0% | |
| TGTTGAACACCACTTTCTTC+CGG | - | chr7.2:52136451-52136470 | MS.gene23215:CDS | 40.0% | |
| TTACAAGCTTTCCTTGGAGA+AGG | + | chr7.2:52134913-52134932 | None:intergenic | 40.0% | |
| TTAGGGGGCTTAGAGATATT+TGG | - | chr7.2:52135377-52135396 | MS.gene23215:intron | 40.0% | |
| ! | AAAACACACCAGTTTGGGTT+TGG | + | chr7.2:52135481-52135500 | None:intergenic | 40.0% |
| ! | AACCCAAACTGGTGTGTTTT+AGG | - | chr7.2:52135481-52135500 | MS.gene23215:intron | 40.0% |
| ! | ATTTAGGAGTGCAGTCCATT+AGG | + | chr7.2:52135185-52135204 | None:intergenic | 40.0% |
| ! | CTTGGAGAAGGTTTTCAGTA+AGG | + | chr7.2:52134901-52134920 | None:intergenic | 40.0% |
| ! | GCTCTACGATTTTCACCATT+CGG | + | chr7.2:52135956-52135975 | None:intergenic | 40.0% |
| ! | GTCTCTACACGTATAGCTTT+TGG | + | chr7.2:52135692-52135711 | None:intergenic | 40.0% |
| !! | GGTGTGTTTTAGGCTATGAA+CGG | - | chr7.2:52135491-52135510 | MS.gene23215:intron | 40.0% |
| !! | TACATAATGTGGCACTGACA+CGG | + | chr7.2:52136695-52136714 | None:intergenic | 40.0% |
| AAGAAGGTCTCCAATGGTCA+AGG | - | chr7.2:52135920-52135939 | MS.gene23215:intron | 45.0% | |
| AAGCCCCCTAAATACTCATC+AGG | + | chr7.2:52135368-52135387 | None:intergenic | 45.0% | |
| ACACGGACATGTGTCTAACA+AGG | + | chr7.2:52136592-52136611 | None:intergenic | 45.0% | |
| AGGGCCTTAGAGATATTTGC+GGG | + | chr7.2:52135295-52135314 | None:intergenic | 45.0% | |
| AGGGGGCTTAGAGATATTTG+GGG | - | chr7.2:52135379-52135398 | MS.gene23215:intron | 45.0% | |
| ATAAAGCCGAGTGAACCAAC+CGG | + | chr7.2:52135237-52135256 | None:intergenic | 45.0% | |
| ATCGTAGAGCAGCTCAAAAG+AGG | - | chr7.2:52135966-52135985 | MS.gene23215:intron | 45.0% | |
| ATTTGTCCCATTTGGCTAGG+GGG | - | chr7.2:52135532-52135551 | MS.gene23215:intron | 45.0% | |
| GAAGCTAAGAAGGTCTCCAA+TGG | - | chr7.2:52135914-52135933 | MS.gene23215:intron | 45.0% | |
| GAGGGCCTTAGAGATATTTG+CGG | + | chr7.2:52135296-52135315 | None:intergenic | 45.0% | |
| GGTCTGCTAGGTATTCTATC+AGG | - | chr7.2:52137014-52137033 | MS.gene23215:intron | 45.0% | |
| GGTGATGCCAAGAAAGTTTG+TGG | - | chr7.2:52135646-52135665 | MS.gene23215:intron | 45.0% | |
| TCTATCAGGATGTGCGCTAA+AGG | - | chr7.2:52137028-52137047 | MS.gene23215:intron | 45.0% | |
| TGAACTCACAAGTGGATGGA+AGG | - | chr7.2:52137060-52137079 | MS.gene23215:intron | 45.0% | |
| ! | ATTCATTTTGCCAGTCCGGT+TGG | - | chr7.2:52135219-52135238 | MS.gene23215:CDS | 45.0% |
| ! | CTACGATTTTCACCATTCGG+AGG | + | chr7.2:52135953-52135972 | None:intergenic | 45.0% |
| ! | TTGGCTTGAAGAAACACGAG+AGG | - | chr7.2:52135007-52135026 | MS.gene23215:CDS | 45.0% |
| !! | AGGTGTTGAATGGGAGAGTT+TGG | - | chr7.2:52136993-52137012 | MS.gene23215:intron | 45.0% |
| !! | TGGATGGAAGGCATTTGCAA+AGG | - | chr7.2:52137072-52137091 | MS.gene23215:intron | 45.0% |
| !! | TTATATAATTCATATTAATA+TGG | - | chr7.2:52135608-52135627 | MS.gene23215:intron | 5.0% |
| ACAAACCCCCCTAGCCAAAT+GGG | + | chr7.2:52135541-52135560 | None:intergenic | 50.0% | |
| AGGCCCCGCAAATATCTCTA+AGG | - | chr7.2:52135288-52135307 | MS.gene23215:intron | 50.0% | |
| ATGGGAGAGTTTGGTCTGCT+AGG | - | chr7.2:52137002-52137021 | MS.gene23215:intron | 50.0% | |
| GGGCCTTAGAGATATTTGCG+GGG | + | chr7.2:52135294-52135313 | None:intergenic | 50.0% | |
| TGCAGCTTACCGGAAGAAAG+TGG | + | chr7.2:52136463-52136482 | None:intergenic | 50.0% | |
| TTTGTCCCATTTGGCTAGGG+GGG | - | chr7.2:52135533-52135552 | MS.gene23215:intron | 50.0% | |
| ! | GAGCATCACTCTCTAGCTCA+TGG | - | chr7.2:52135794-52135813 | MS.gene23215:CDS | 50.0% |
| CACAAACCCCCCTAGCCAAA+TGG | + | chr7.2:52135542-52135561 | None:intergenic | 55.0% | |
| GGGCTTAGCCAAACCCAAAC+TGG | - | chr7.2:52135470-52135489 | MS.gene23215:intron | 55.0% | |
| TTTGGCTAGGGGGGTTTGTG+TGG | - | chr7.2:52135542-52135561 | MS.gene23215:intron | 55.0% | |
| ! | GCCAGTCCGGTTGGTTCACT+CGG | - | chr7.2:52135228-52135247 | MS.gene23215:CDS | 60.0% |
| GCCGAGTGAACCAACCGGAC+TGG | + | chr7.2:52135232-52135251 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 52134848 | 52137342 | 52134848 | ID=MS.gene23215 |
| chr7.2 | mRNA | 52134848 | 52137342 | 52134848 | ID=MS.gene23215.t1;Parent=MS.gene23215 |
| chr7.2 | exon | 52137262 | 52137342 | 52137262 | ID=MS.gene23215.t1.exon1;Parent=MS.gene23215.t1 |
| chr7.2 | CDS | 52137262 | 52137342 | 52137262 | ID=cds.MS.gene23215.t1;Parent=MS.gene23215.t1 |
| chr7.2 | exon | 52136090 | 52136543 | 52136090 | ID=MS.gene23215.t1.exon2;Parent=MS.gene23215.t1 |
| chr7.2 | CDS | 52136090 | 52136543 | 52136090 | ID=cds.MS.gene23215.t1;Parent=MS.gene23215.t1 |
| chr7.2 | exon | 52135718 | 52135842 | 52135718 | ID=MS.gene23215.t1.exon3;Parent=MS.gene23215.t1 |
| chr7.2 | CDS | 52135718 | 52135842 | 52135718 | ID=cds.MS.gene23215.t1;Parent=MS.gene23215.t1 |
| chr7.2 | exon | 52134973 | 52135264 | 52134973 | ID=MS.gene23215.t1.exon4;Parent=MS.gene23215.t1 |
| chr7.2 | CDS | 52134973 | 52135264 | 52134973 | ID=cds.MS.gene23215.t1;Parent=MS.gene23215.t1 |
| chr7.2 | exon | 52134848 | 52134888 | 52134848 | ID=MS.gene23215.t1.exon5;Parent=MS.gene23215.t1 |
| chr7.2 | CDS | 52134848 | 52134888 | 52134848 | ID=cds.MS.gene23215.t1;Parent=MS.gene23215.t1 |
| Gene Sequence |
| Protein sequence |
