Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23224.t1 | XP_024626636.1 | 90.5 | 285 | 27 | 0 | 1 | 285 | 1 | 285 | 4.10E-144 | 520.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23224.t1 | Q8L3W1 | 28.2 | 323 | 163 | 7 | 1 | 262 | 22 | 336 | 8.9e-23 | 109.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23224.t1 | G7KVV6 | 90.5 | 285 | 27 | 0 | 1 | 285 | 29 | 313 | 2.9e-144 | 520.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene23224.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23224.t1 | MTR_7g050580 | 90.526 | 285 | 27 | 0 | 1 | 285 | 29 | 313 | 0.0 | 511 |
| MS.gene23224.t1 | MTR_7g050710 | 70.508 | 295 | 70 | 3 | 1 | 278 | 29 | 323 | 4.09e-146 | 413 |
| MS.gene23224.t1 | MTR_3g098790 | 68.641 | 287 | 81 | 2 | 1 | 278 | 29 | 315 | 7.00e-142 | 402 |
| MS.gene23224.t1 | MTR_7g050590 | 68.243 | 296 | 75 | 5 | 1 | 278 | 2 | 296 | 1.49e-140 | 398 |
| MS.gene23224.t1 | MTR_7g050560 | 65.781 | 301 | 71 | 7 | 1 | 285 | 29 | 313 | 7.61e-132 | 376 |
| MS.gene23224.t1 | MTR_7g050720 | 54.608 | 293 | 103 | 9 | 1 | 264 | 26 | 317 | 2.98e-98 | 291 |
| MS.gene23224.t1 | MTR_1g108780 | 33.113 | 302 | 152 | 8 | 1 | 269 | 13 | 297 | 5.36e-46 | 160 |
| MS.gene23224.t1 | MTR_1g035460 | 32.484 | 314 | 164 | 8 | 1 | 279 | 2 | 302 | 7.84e-43 | 151 |
| MS.gene23224.t1 | MTR_8g103940 | 34.564 | 298 | 138 | 8 | 1 | 262 | 55 | 331 | 2.59e-42 | 152 |
| MS.gene23224.t1 | MTR_5g044670 | 33.798 | 287 | 166 | 8 | 1 | 270 | 32 | 311 | 5.73e-40 | 142 |
| MS.gene23224.t1 | MTR_7g050640 | 63.095 | 84 | 31 | 0 | 1 | 84 | 29 | 112 | 3.38e-33 | 118 |
| MS.gene23224.t1 | MTR_3g061320 | 31.818 | 264 | 167 | 7 | 1 | 261 | 26 | 279 | 2.04e-32 | 120 |
| MS.gene23224.t1 | MTR_3g061370 | 30.627 | 271 | 166 | 9 | 1 | 261 | 23 | 281 | 2.42e-32 | 120 |
| MS.gene23224.t1 | MTR_3g061350 | 29.630 | 270 | 170 | 8 | 1 | 261 | 26 | 284 | 3.16e-30 | 115 |
| MS.gene23224.t1 | MTR_3g061340 | 29.044 | 272 | 159 | 10 | 1 | 261 | 26 | 274 | 1.46e-29 | 113 |
| MS.gene23224.t1 | MTR_3g061310 | 29.104 | 268 | 175 | 9 | 1 | 261 | 26 | 285 | 6.49e-29 | 112 |
| MS.gene23224.t1 | MTR_3g061330 | 32.222 | 180 | 110 | 3 | 1 | 172 | 26 | 201 | 1.71e-26 | 104 |
| MS.gene23224.t1 | MTR_1g035570 | 31.522 | 276 | 166 | 8 | 1 | 262 | 21 | 287 | 2.42e-26 | 107 |
| MS.gene23224.t1 | MTR_1g050845 | 33.080 | 263 | 151 | 9 | 1 | 260 | 25 | 265 | 3.06e-26 | 108 |
| MS.gene23224.t1 | MTR_1g035620 | 29.434 | 265 | 170 | 7 | 1 | 260 | 25 | 277 | 6.11e-26 | 106 |
| MS.gene23224.t1 | MTR_1g035640 | 28.881 | 277 | 181 | 7 | 1 | 270 | 21 | 288 | 2.31e-25 | 105 |
| MS.gene23224.t1 | MTR_6g043890 | 29.496 | 278 | 149 | 8 | 1 | 248 | 31 | 291 | 3.19e-23 | 97.4 |
| MS.gene23224.t1 | MTR_3g005490 | 26.740 | 273 | 145 | 5 | 1 | 265 | 37 | 262 | 3.54e-23 | 95.9 |
| MS.gene23224.t1 | MTR_1g021360 | 28.571 | 273 | 168 | 7 | 1 | 254 | 198 | 462 | 2.71e-22 | 96.3 |
| MS.gene23224.t1 | MTR_3g005420 | 30.337 | 267 | 152 | 10 | 1 | 265 | 305 | 539 | 3.56e-22 | 96.3 |
| MS.gene23224.t1 | MTR_3g005420 | 22.441 | 254 | 136 | 6 | 1 | 249 | 56 | 253 | 4.54e-11 | 63.5 |
| MS.gene23224.t1 | MTR_1g021440 | 24.843 | 318 | 171 | 8 | 1 | 254 | 38 | 351 | 7.66e-22 | 94.4 |
| MS.gene23224.t1 | MTR_3g005480 | 26.966 | 267 | 153 | 7 | 1 | 265 | 37 | 263 | 2.56e-21 | 90.9 |
| MS.gene23224.t1 | MTR_5g070440 | 28.102 | 274 | 149 | 9 | 1 | 265 | 37 | 271 | 3.11e-21 | 90.9 |
| MS.gene23224.t1 | MTR_3g061290 | 45.882 | 85 | 46 | 0 | 1 | 85 | 26 | 110 | 2.48e-20 | 87.0 |
| MS.gene23224.t1 | MTR_1g021435 | 25.155 | 322 | 172 | 8 | 1 | 260 | 38 | 352 | 6.67e-20 | 88.6 |
| MS.gene23224.t1 | MTR_1g021410 | 24.516 | 310 | 180 | 7 | 1 | 261 | 38 | 342 | 9.51e-20 | 88.2 |
| MS.gene23224.t1 | MTR_1g021400 | 25.776 | 322 | 178 | 10 | 1 | 268 | 46 | 360 | 1.37e-19 | 87.8 |
| MS.gene23224.t1 | MTR_6g061070 | 29.000 | 300 | 162 | 10 | 1 | 261 | 34 | 321 | 1.41e-19 | 88.6 |
| MS.gene23224.t1 | MTR_3g005460 | 29.137 | 278 | 149 | 11 | 1 | 265 | 278 | 520 | 2.05e-18 | 85.1 |
| MS.gene23224.t1 | MTR_3g005460 | 32.143 | 84 | 57 | 0 | 1 | 84 | 41 | 124 | 1.73e-12 | 67.8 |
| MS.gene23224.t1 | MTR_1g034240 | 42.169 | 83 | 48 | 0 | 1 | 83 | 23 | 105 | 9.22e-18 | 83.2 |
| MS.gene23224.t1 | MTR_1g034240 | 29.197 | 137 | 91 | 2 | 132 | 268 | 268 | 398 | 5.38e-13 | 68.9 |
| MS.gene23224.t1 | MTR_1g021380 | 23.667 | 300 | 171 | 6 | 1 | 254 | 37 | 324 | 1.22e-17 | 82.0 |
| MS.gene23224.t1 | MTR_3g005495 | 28.968 | 252 | 127 | 8 | 1 | 249 | 259 | 461 | 3.17e-16 | 78.6 |
| MS.gene23224.t1 | MTR_3g005495 | 29.907 | 107 | 74 | 1 | 1 | 106 | 29 | 135 | 6.07e-14 | 72.0 |
| MS.gene23224.t1 | MTR_4g068320 | 39.326 | 89 | 52 | 1 | 1 | 87 | 22 | 110 | 3.27e-16 | 78.6 |
| MS.gene23224.t1 | MTR_4g068320 | 31.618 | 136 | 87 | 2 | 132 | 267 | 264 | 393 | 4.28e-14 | 72.4 |
| MS.gene23224.t1 | MTR_4g119990 | 26.923 | 286 | 179 | 9 | 1 | 261 | 31 | 311 | 3.78e-16 | 78.2 |
| MS.gene23224.t1 | MTR_3g005440 | 32.759 | 116 | 69 | 2 | 1 | 116 | 36 | 142 | 2.72e-15 | 75.9 |
| MS.gene23224.t1 | MTR_3g005440 | 27.778 | 180 | 106 | 5 | 4 | 181 | 261 | 418 | 4.53e-11 | 63.2 |
| MS.gene23224.t1 | MTR_1g035650 | 29.189 | 185 | 117 | 3 | 1 | 177 | 25 | 203 | 6.45e-15 | 72.4 |
| MS.gene23224.t1 | MTR_1g034210 | 39.241 | 79 | 48 | 0 | 1 | 79 | 23 | 101 | 5.25e-14 | 71.2 |
| MS.gene23224.t1 | MTR_1g035520 | 39.394 | 99 | 52 | 3 | 1 | 99 | 88 | 178 | 6.09e-14 | 71.6 |
| MS.gene23224.t1 | MTR_1g034210 | 39.241 | 79 | 48 | 0 | 1 | 79 | 23 | 101 | 6.77e-14 | 71.2 |
| MS.gene23224.t1 | MTR_1g021350 | 25.773 | 291 | 167 | 8 | 1 | 254 | 37 | 315 | 9.37e-14 | 70.9 |
| MS.gene23224.t1 | MTR_3g061220 | 34.951 | 103 | 53 | 2 | 1 | 102 | 26 | 115 | 1.45e-13 | 66.2 |
| MS.gene23224.t1 | MTR_1g035480 | 40.426 | 94 | 53 | 2 | 1 | 94 | 33 | 123 | 1.66e-13 | 67.8 |
| MS.gene23224.t1 | MTR_1g021320 | 38.667 | 75 | 46 | 0 | 1 | 75 | 198 | 272 | 3.87e-12 | 67.0 |
| MS.gene23224.t1 | MTR_1g021440 | 38.667 | 75 | 46 | 0 | 1 | 75 | 38 | 112 | 5.04e-12 | 65.5 |
| MS.gene23224.t1 | MTR_1g021440 | 38.667 | 75 | 46 | 0 | 1 | 75 | 38 | 112 | 6.24e-12 | 65.1 |
| MS.gene23224.t1 | MTR_1g021440 | 38.667 | 75 | 46 | 0 | 1 | 75 | 38 | 112 | 9.77e-12 | 65.1 |
| MS.gene23224.t1 | MTR_1g035490 | 34.959 | 123 | 73 | 4 | 142 | 262 | 79 | 196 | 1.64e-11 | 64.3 |
| MS.gene23224.t1 | MTR_1g021290 | 38.667 | 75 | 46 | 0 | 1 | 75 | 171 | 245 | 2.52e-11 | 63.5 |
| MS.gene23224.t1 | MTR_1g035470 | 36.170 | 94 | 57 | 2 | 1 | 94 | 2 | 92 | 2.98e-11 | 60.5 |
| MS.gene23224.t1 | MTR_1g021330 | 30.612 | 147 | 93 | 4 | 108 | 254 | 215 | 352 | 6.34e-11 | 62.8 |
| MS.gene23224.t1 | MTR_3g005420 | 22.441 | 254 | 136 | 6 | 1 | 249 | 37 | 234 | 6.42e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23224.t1 | AT3G18990 | 27.385 | 325 | 169 | 6 | 1 | 265 | 22 | 339 | 5.27e-28 | 111 |
| MS.gene23224.t1 | AT3G18990 | 26.708 | 322 | 169 | 6 | 1 | 262 | 22 | 336 | 9.27e-28 | 110 |
| MS.gene23224.t1 | AT4G33280 | 27.907 | 301 | 172 | 13 | 1 | 269 | 39 | 326 | 3.72e-20 | 89.0 |
| MS.gene23224.t1 | AT1G49475 | 42.000 | 100 | 57 | 1 | 1 | 100 | 50 | 148 | 2.41e-19 | 84.0 |
| MS.gene23224.t1 | AT4G01580 | 46.591 | 88 | 47 | 0 | 1 | 88 | 46 | 133 | 2.56e-19 | 84.0 |
| MS.gene23224.t1 | AT3G18960 | 35.294 | 136 | 72 | 2 | 1 | 120 | 46 | 181 | 3.07e-18 | 81.3 |
| MS.gene23224.t1 | AT3G18960 | 35.294 | 136 | 72 | 2 | 1 | 120 | 9 | 144 | 4.84e-18 | 80.1 |
| MS.gene23224.t1 | AT3G18960 | 35.294 | 136 | 72 | 2 | 1 | 120 | 46 | 181 | 5.87e-18 | 80.9 |
Find 38 sgRNAs with CRISPR-Local
Find 78 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGCTAACTCCTTTGAATT+TGG | 0.175508 | 7.2:+52250907 | MS.gene23224:CDS |
| TGGAAAATGGAAATTAAATT+TGG | 0.234349 | 7.2:+52250639 | MS.gene23224:CDS |
| AGAAAATTTGTGGAGAAATA+TGG | 0.268462 | 7.2:+52250574 | MS.gene23224:CDS |
| GTCTTTAGACATGTTTCTTT+TGG | 0.282527 | 7.2:-52250607 | None:intergenic |
| AGACTCCAAATGGTGGAAAA+TGG | 0.283126 | 7.2:+52250626 | MS.gene23224:CDS |
| CAAGGAAATGAATCTCTAAA+TGG | 0.329233 | 7.2:+52250856 | MS.gene23224:CDS |
| ATGTAGCTTCTTCTTTCATT+TGG | 0.329258 | 7.2:-52251939 | None:intergenic |
| AGTAGTAGTTGTGTTAAAGT+TGG | 0.371498 | 7.2:+52250931 | MS.gene23224:CDS |
| AGGTGTTAAATGAAGGAGTT+TGG | 0.387476 | 7.2:+52251620 | MS.gene23224:CDS |
| TGGTTATAGACACTTTGATT+TGG | 0.391800 | 7.2:+52251570 | MS.gene23224:CDS |
| CAGAATATACCACGTATGTT+TGG | 0.395589 | 7.2:+52251550 | MS.gene23224:intron |
| GATGATGCCAAGAAAATTTG+TGG | 0.418421 | 7.2:+52250564 | None:intergenic |
| GTAGTAGTTGTGTTAAAGTT+GGG | 0.429796 | 7.2:+52250932 | MS.gene23224:CDS |
| AGATTCATTTCCTTGATCAA+TGG | 0.441958 | 7.2:-52250848 | None:intergenic |
| ATCAAATTGTAGTCCTGTAC+TGG | 0.447350 | 7.2:-52251668 | None:intergenic |
| TGGCAAGGTATGGTTTGAAA+AGG | 0.450397 | 7.2:+52250672 | MS.gene23224:CDS |
| ATGAAGGAGTTTGGCCTACA+AGG | 0.459083 | 7.2:+52251629 | MS.gene23224:CDS |
| CGCATGACAACAACAAATGA+TGG | 0.473085 | 7.2:-52251191 | None:intergenic |
| TTTGATTTGGATAAGAAAAG+AGG | 0.493087 | 7.2:+52251583 | MS.gene23224:CDS |
| ATGAAAGAAGAAGCTACATA+AGG | 0.494645 | 7.2:+52251943 | MS.gene23224:CDS |
| ACATGTCTAAAGACTCCAAA+TGG | 0.505252 | 7.2:+52250616 | MS.gene23224:CDS |
| GAGGACAATAACTTGAAAGT+TGG | 0.523457 | 7.2:+52251718 | MS.gene23224:CDS |
| TCTAAAGATATGAACAATGA+AGG | 0.524509 | 7.2:-52251782 | None:intergenic |
| AGGTATGGTTTGAAAAGGGT+TGG | 0.528620 | 7.2:+52250677 | MS.gene23224:CDS |
| TTCCTGATAGAAAACCTTGT+AGG | 0.540464 | 7.2:-52251643 | None:intergenic |
| GGCAAGGTATGGTTTGAAAA+GGG | 0.548981 | 7.2:+52250673 | MS.gene23224:CDS |
| TCTATCAGGAAGTCCAGTAC+AGG | 0.551024 | 7.2:+52251655 | MS.gene23224:CDS |
| ACTACTACTTCCAAATTCAA+AGG | 0.556173 | 7.2:-52250917 | None:intergenic |
| TGATATCACAAGTGGATGGA+AGG | 0.558355 | 7.2:+52251687 | MS.gene23224:CDS |
| TGTTGAACATAGATTTCTGA+TGG | 0.558556 | 7.2:+52251223 | MS.gene23224:CDS |
| ATATGTACCTCAAAATTGGA+AGG | 0.569214 | 7.2:-52250763 | None:intergenic |
| GAGCATCACTCTCTAGCTCA+TGG | 0.577825 | 7.2:+52250712 | MS.gene23224:CDS |
| CTACAATTTGATATCACAAG+TGG | 0.598375 | 7.2:+52251679 | MS.gene23224:CDS |
| AATTTGATATCACAAGTGGA+TGG | 0.625506 | 7.2:+52251683 | MS.gene23224:CDS |
| AAATCACAAAAGAAGTCCAA+AGG | 0.633010 | 7.2:+52250955 | MS.gene23224:CDS |
| TGTCTAAAGACTCCAAATGG+TGG | 0.636064 | 7.2:+52250619 | MS.gene23224:CDS |
| TGGATGGAAGGCATTTGCAG+AGG | 0.673309 | 7.2:+52251699 | MS.gene23224:CDS |
| TGTCTATAACCAAACATACG+TGG | 0.709060 | 7.2:-52251559 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTAAAAATAATTTACCTG+TGG | + | chr7.2:52251338-52251357 | MS.gene23224:intron | 15.0% |
| !! | AAAAATATGTACCTCAAAAT+TGG | - | chr7.2:52250770-52250789 | None:intergenic | 20.0% |
| !! | CCAAAGGTAAAAAAAAAAAA+AGG | + | chr7.2:52250971-52250990 | MS.gene23224:intron | 20.0% |
| !! | GTTAATGAATAAAAAATGTG+TGG | - | chr7.2:52251508-52251527 | None:intergenic | 20.0% |
| !! | TGGAAAATGGAAATTAAATT+TGG | + | chr7.2:52250639-52250658 | MS.gene23224:CDS | 20.0% |
| !! | TTAAATTTGGTAAAAAGTGA+TGG | + | chr7.2:52250652-52250671 | MS.gene23224:CDS | 20.0% |
| !!! | CCTTTTTTTTTTTTTACCTT+TGG | - | chr7.2:52250974-52250993 | None:intergenic | 20.0% |
| ! | AGAAAATTTGTGGAGAAATA+TGG | + | chr7.2:52250574-52250593 | MS.gene23224:CDS | 25.0% |
| ! | TACTAAATTGGAACATTATC+AGG | - | chr7.2:52251040-52251059 | None:intergenic | 25.0% |
| ! | TCTAAAGATATGAACAATGA+AGG | - | chr7.2:52251785-52251804 | None:intergenic | 25.0% |
| !! | AAATAATTTACCTGTGGTTT+TGG | + | chr7.2:52251344-52251363 | MS.gene23224:intron | 25.0% |
| !! | CTTTTTATCTTCAACTCTTT+TGG | - | chr7.2:52250824-52250843 | None:intergenic | 25.0% |
| !! | TATTTCTCCACAAATTTTCT+TGG | - | chr7.2:52250574-52250593 | None:intergenic | 25.0% |
| !! | TCTAGTCTTTAGTAGATTAA+GGG | + | chr7.2:52251295-52251314 | MS.gene23224:intron | 25.0% |
| !! | TGATAATGTTCCAATTTAGT+AGG | + | chr7.2:52251039-52251058 | MS.gene23224:intron | 25.0% |
| !!! | AAGAGGAGATATTTATTTTC+AGG | + | chr7.2:52251600-52251619 | MS.gene23224:CDS | 25.0% |
| !!! | CATTCGTTTTTTCTTTTGTT+TGG | + | chr7.2:52251527-52251546 | MS.gene23224:intron | 25.0% |
| !!! | TATTTTCAGGTGTTAAATGA+AGG | + | chr7.2:52251613-52251632 | MS.gene23224:CDS | 25.0% |
| !!! | TTTGATTTGGATAAGAAAAG+AGG | + | chr7.2:52251583-52251602 | MS.gene23224:CDS | 25.0% |
| AAAAAGATCTCCATTGATCA+AGG | + | chr7.2:52250838-52250857 | MS.gene23224:CDS | 30.0% | |
| AAAGCTAACTCCTTTGAATT+TGG | + | chr7.2:52250907-52250926 | MS.gene23224:CDS | 30.0% | |
| AAATCACAAAAGAAGTCCAA+AGG | + | chr7.2:52250955-52250974 | MS.gene23224:CDS | 30.0% | |
| AATTTGATATCACAAGTGGA+TGG | + | chr7.2:52251683-52251702 | MS.gene23224:CDS | 30.0% | |
| ACATGAAATGCCTACTAAAT+TGG | - | chr7.2:52251052-52251071 | None:intergenic | 30.0% | |
| ACTACTACTTCCAAATTCAA+AGG | - | chr7.2:52250920-52250939 | None:intergenic | 30.0% | |
| AGATTCATTTCCTTGATCAA+TGG | - | chr7.2:52250851-52250870 | None:intergenic | 30.0% | |
| AGTAGTAGTTGTGTTAAAGT+TGG | + | chr7.2:52250931-52250950 | MS.gene23224:CDS | 30.0% | |
| ATATGTACCTCAAAATTGGA+AGG | - | chr7.2:52250766-52250785 | None:intergenic | 30.0% | |
| ATGTAGCTTCTTCTTTCATT+TGG | - | chr7.2:52251942-52251961 | None:intergenic | 30.0% | |
| CAAGGAAATGAATCTCTAAA+TGG | + | chr7.2:52250856-52250875 | MS.gene23224:CDS | 30.0% | |
| CATATCTAAAAAGCAGAAGA+TGG | - | chr7.2:52250738-52250757 | None:intergenic | 30.0% | |
| CTAAAGACTAGAGAAAGATT+TGG | - | chr7.2:52251287-52251306 | None:intergenic | 30.0% | |
| CTACAATTTGATATCACAAG+TGG | + | chr7.2:52251679-52251698 | MS.gene23224:CDS | 30.0% | |
| GTAGTAGTTGTGTTAAAGTT+GGG | + | chr7.2:52250932-52250951 | MS.gene23224:CDS | 30.0% | |
| TGCAAAATTGGAACATTATC+AGG | - | chr7.2:52251099-52251118 | None:intergenic | 30.0% | |
| TGGTTATAGACACTTTGATT+TGG | + | chr7.2:52251570-52251589 | MS.gene23224:CDS | 30.0% | |
| TGTTGAACATAGATTTCTGA+TGG | + | chr7.2:52251223-52251242 | MS.gene23224:CDS | 30.0% | |
| ! | AATTTCCATTTTCCACCATT+TGG | - | chr7.2:52250634-52250653 | None:intergenic | 30.0% |
| ! | CTAGAGAAAGATTTGGTTAT+TGG | - | chr7.2:52251280-52251299 | None:intergenic | 30.0% |
| ! | CTAGTCTTTAGTAGATTAAG+GGG | + | chr7.2:52251296-52251315 | MS.gene23224:intron | 30.0% |
| ! | CTCTAGTCTTTAGTAGATTA+AGG | + | chr7.2:52251294-52251313 | MS.gene23224:intron | 30.0% |
| ! | GTCTTTAGACATGTTTCTTT+TGG | - | chr7.2:52250610-52250629 | None:intergenic | 30.0% |
| ! | TATCTTCAACTCTTTTGGTA+GGG | - | chr7.2:52250819-52250838 | None:intergenic | 30.0% |
| ! | TGAAAAACCTTCCAATTTTG+AGG | + | chr7.2:52250756-52250775 | MS.gene23224:CDS | 30.0% |
| ! | TTATCTTCAACTCTTTTGGT+AGG | - | chr7.2:52250820-52250839 | None:intergenic | 30.0% |
| !! | TATTTTTGAAAAGAGTGCGT+TGG | + | chr7.2:52250783-52250802 | MS.gene23224:CDS | 30.0% |
| !! | TGATAATGTTCCAATTTTGC+AGG | + | chr7.2:52251098-52251117 | MS.gene23224:intron | 30.0% |
| ACATGTCTAAAGACTCCAAA+TGG | + | chr7.2:52250616-52250635 | MS.gene23224:CDS | 35.0% | |
| AGGTGTTAAATGAAGGAGTT+TGG | + | chr7.2:52251620-52251639 | MS.gene23224:CDS | 35.0% | |
| ATCAAATTGTAGTCCTGTAC+TGG | - | chr7.2:52251671-52251690 | None:intergenic | 35.0% | |
| CAGAATATACCACGTATGTT+TGG | + | chr7.2:52251550-52251569 | MS.gene23224:intron | 35.0% | |
| CTCATAGTGTGTTTCTCTTA+AGG | + | chr7.2:52251375-52251394 | MS.gene23224:intron | 35.0% | |
| CTTAAGAGAAACACACTATG+AGG | - | chr7.2:52251377-52251396 | None:intergenic | 35.0% | |
| GAGGACAATAACTTGAAAGT+TGG | + | chr7.2:52251718-52251737 | MS.gene23224:CDS | 35.0% | |
| TAAAAAGTGATGGCAAGGTA+TGG | + | chr7.2:52250662-52250681 | MS.gene23224:CDS | 35.0% | |
| TGTCTATAACCAAACATACG+TGG | - | chr7.2:52251562-52251581 | None:intergenic | 35.0% | |
| TTCCTGATAGAAAACCTTGT+AGG | - | chr7.2:52251646-52251665 | None:intergenic | 35.0% | |
| TTTGGTAAAAAGTGATGGCA+AGG | + | chr7.2:52250657-52250676 | MS.gene23224:CDS | 35.0% | |
| !! | CACTTGTTTTCCTGCAAAAT+TGG | - | chr7.2:52251111-52251130 | None:intergenic | 35.0% |
| AGGTATGGTTTGAAAAGGGT+TGG | + | chr7.2:52250677-52250696 | MS.gene23224:CDS | 40.0% | |
| CGCATGACAACAACAAATGA+TGG | - | chr7.2:52251194-52251213 | None:intergenic | 40.0% | |
| GGCAAGGTATGGTTTGAAAA+GGG | + | chr7.2:52250673-52250692 | MS.gene23224:CDS | 40.0% | |
| GTCTCAGGTAAGATTTACCT+CGG | + | chr7.2:52251397-52251416 | MS.gene23224:intron | 40.0% | |
| TGATATCACAAGTGGATGGA+AGG | + | chr7.2:52251687-52251706 | MS.gene23224:CDS | 40.0% | |
| TGGAGAGATTCTGCATAAGA+TGG | - | chr7.2:52251922-52251941 | None:intergenic | 40.0% | |
| TGGCAAGGTATGGTTTGAAA+AGG | + | chr7.2:52250672-52250691 | MS.gene23224:CDS | 40.0% | |
| TGTCTAAAGACTCCAAATGG+TGG | + | chr7.2:52250619-52250638 | MS.gene23224:CDS | 40.0% | |
| TGTGTTTCTCTTAAGGTCTC+AGG | + | chr7.2:52251382-52251401 | MS.gene23224:intron | 40.0% | |
| ! | AGACTCCAAATGGTGGAAAA+TGG | + | chr7.2:52250626-52250645 | MS.gene23224:CDS | 40.0% |
| !! | GATTTACCTCGGTGCAATTT+TGG | + | chr7.2:52251408-52251427 | MS.gene23224:intron | 40.0% |
| ATACCACCAAAATTGCACCG+AGG | - | chr7.2:52251417-52251436 | None:intergenic | 45.0% | |
| ATGAAGGAGTTTGGCCTACA+AGG | + | chr7.2:52251629-52251648 | MS.gene23224:CDS | 45.0% | |
| TCTATCAGGAAGTCCAGTAC+AGG | + | chr7.2:52251655-52251674 | MS.gene23224:CDS | 45.0% | |
| ! | GGCCTACAAGGTTTTCTATC+AGG | + | chr7.2:52251641-52251660 | MS.gene23224:CDS | 45.0% |
| !! | TTACCTCGGTGCAATTTTGG+TGG | + | chr7.2:52251411-52251430 | MS.gene23224:intron | 45.0% |
| AGGACTGAAGCCAAAACCAC+AGG | - | chr7.2:52251357-52251376 | None:intergenic | 50.0% | |
| ! | GAGCATCACTCTCTAGCTCA+TGG | + | chr7.2:52250712-52250731 | MS.gene23224:CDS | 50.0% |
| !! | TGGATGGAAGGCATTTGCAG+AGG | + | chr7.2:52251699-52251718 | MS.gene23224:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 52250568 | 52251963 | 52250568 | ID=MS.gene23224 |
| chr7.2 | mRNA | 52250568 | 52251963 | 52250568 | ID=MS.gene23224.t1;Parent=MS.gene23224 |
| chr7.2 | exon | 52250568 | 52250976 | 52250568 | ID=MS.gene23224.t1.exon1;Parent=MS.gene23224.t1 |
| chr7.2 | CDS | 52250568 | 52250976 | 52250568 | ID=cds.MS.gene23224.t1;Parent=MS.gene23224.t1 |
| chr7.2 | exon | 52251120 | 52251244 | 52251120 | ID=MS.gene23224.t1.exon2;Parent=MS.gene23224.t1 |
| chr7.2 | CDS | 52251120 | 52251244 | 52251120 | ID=cds.MS.gene23224.t1;Parent=MS.gene23224.t1 |
| chr7.2 | exon | 52251553 | 52251844 | 52251553 | ID=MS.gene23224.t1.exon3;Parent=MS.gene23224.t1 |
| chr7.2 | CDS | 52251553 | 52251844 | 52251553 | ID=cds.MS.gene23224.t1;Parent=MS.gene23224.t1 |
| chr7.2 | exon | 52251932 | 52251963 | 52251932 | ID=MS.gene23224.t1.exon4;Parent=MS.gene23224.t1 |
| chr7.2 | CDS | 52251932 | 52251963 | 52251932 | ID=cds.MS.gene23224.t1;Parent=MS.gene23224.t1 |
| Gene Sequence |
| Protein sequence |
