AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene23229

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene23229.t1 MTR_7g050590 87.205 297 37 1 1 296 1 297 0.0 527
MS.gene23229.t1 MTR_7g050560 75.085 293 55 4 1 292 28 303 2.66e-156 439
MS.gene23229.t1 MTR_7g050710 69.565 299 84 5 2 296 29 324 1.43e-148 419
MS.gene23229.t1 MTR_3g098790 70.707 297 78 4 1 296 28 316 8.42e-146 412
MS.gene23229.t1 MTR_7g050580 70.548 292 70 3 1 292 28 303 2.07e-145 411
MS.gene23229.t1 MTR_7g050720 62.712 295 94 8 1 281 25 317 1.11e-120 348
MS.gene23229.t1 MTR_1g035460 36.755 302 153 8 1 279 1 287 1.56e-52 177
MS.gene23229.t1 MTR_1g108780 36.949 295 152 11 2 279 13 290 7.93e-51 174
MS.gene23229.t1 MTR_8g103940 35.836 293 157 9 2 279 55 331 1.69e-46 163
MS.gene23229.t1 MTR_7g050640 69.767 86 26 0 1 86 28 113 7.94e-37 127
MS.gene23229.t1 MTR_5g044670 29.932 294 186 7 1 287 31 311 1.82e-36 133
MS.gene23229.t1 MTR_3g061320 32.374 278 163 8 2 278 26 279 2.51e-34 126
MS.gene23229.t1 MTR_3g061350 28.881 277 179 6 2 278 26 284 1.50e-31 119
MS.gene23229.t1 MTR_3g061370 29.242 277 178 6 2 278 23 281 5.25e-31 117
MS.gene23229.t1 MTR_3g061340 28.014 282 165 8 2 278 26 274 1.67e-27 108
MS.gene23229.t1 MTR_3g061310 30.249 281 171 9 2 278 26 285 2.38e-27 107
MS.gene23229.t1 MTR_1g035570 31.359 287 168 9 2 279 21 287 6.37e-25 103
MS.gene23229.t1 MTR_3g005420 30.142 282 149 8 2 282 305 539 3.38e-24 102
MS.gene23229.t1 MTR_3g005420 21.429 266 140 5 2 266 56 253 7.05e-14 72.0
MS.gene23229.t1 MTR_6g043890 28.938 273 173 10 2 265 31 291 1.14e-23 99.0
MS.gene23229.t1 MTR_5g070440 26.644 289 150 6 2 282 37 271 1.60e-23 97.4
MS.gene23229.t1 MTR_1g035640 29.787 282 168 9 2 277 21 278 2.04e-23 99.8
MS.gene23229.t1 MTR_1g021360 29.682 283 158 9 2 266 198 457 2.93e-23 99.4
MS.gene23229.t1 MTR_1g050845 28.929 280 156 7 2 277 25 265 5.68e-23 99.4
MS.gene23229.t1 MTR_1g035620 27.586 290 159 6 2 277 25 277 9.96e-23 97.4
MS.gene23229.t1 MTR_3g061330 29.787 188 120 2 2 189 26 201 1.76e-22 94.0
MS.gene23229.t1 MTR_1g021440 25.552 317 186 8 2 271 38 351 3.00e-22 95.9
MS.gene23229.t1 MTR_6g061070 28.333 300 182 10 1 278 33 321 7.04e-22 95.5
MS.gene23229.t1 MTR_4g119990 27.852 298 193 8 2 286 31 319 8.46e-22 94.4
MS.gene23229.t1 MTR_1g021270 25.000 312 183 7 2 266 31 338 1.05e-21 95.5
MS.gene23229.t1 MTR_3g005480 24.828 290 146 8 2 282 37 263 1.64e-21 91.7
MS.gene23229.t1 MTR_3g005490 26.207 290 141 8 2 282 37 262 2.06e-21 91.7
MS.gene23229.t1 MTR_3g061290 48.193 83 43 0 2 84 26 108 1.00e-20 88.2
MS.gene23229.t1 MTR_1g021380 25.817 306 173 8 2 271 37 324 7.70e-20 88.6
MS.gene23229.t1 MTR_1g021400 23.077 312 197 8 2 278 46 349 3.54e-18 84.0
MS.gene23229.t1 MTR_4g068320 39.583 96 56 1 2 97 22 115 4.00e-18 84.3
MS.gene23229.t1 MTR_4g068320 28.788 132 88 2 153 284 268 393 1.68e-12 67.8
MS.gene23229.t1 MTR_1g034240 40.964 83 49 0 2 84 23 105 5.26e-18 84.0
MS.gene23229.t1 MTR_1g034240 28.571 133 89 2 153 285 272 398 1.66e-12 67.8
MS.gene23229.t1 MTR_3g005460 24.658 292 160 9 2 282 278 520 8.63e-18 83.6
MS.gene23229.t1 MTR_3g005460 35.644 101 59 1 2 102 41 135 4.05e-16 78.6
MS.gene23229.t1 MTR_3g005440 30.894 123 83 2 2 124 36 156 4.67e-17 81.3
MS.gene23229.t1 MTR_3g005440 30.702 114 79 0 5 118 261 374 2.96e-11 63.9
MS.gene23229.t1 MTR_3g005495 35.238 105 63 1 2 106 29 128 5.72e-17 81.3
MS.gene23229.t1 MTR_3g005495 27.341 267 128 8 2 266 259 461 7.87e-17 80.9
MS.gene23229.t1 MTR_1g021350 25.862 290 184 8 2 271 37 315 9.53e-16 77.0
MS.gene23229.t1 MTR_1g035520 25.329 304 192 8 1 277 87 382 2.41e-15 75.9
MS.gene23229.t1 MTR_3g005420 21.429 266 140 5 2 266 37 234 7.63e-14 72.0
MS.gene23229.t1 MTR_1g035480 44.048 84 44 2 1 84 32 112 8.21e-14 68.9
MS.gene23229.t1 MTR_1g034210 37.349 83 50 1 2 84 23 103 1.78e-13 70.1
MS.gene23229.t1 MTR_3g061220 38.554 83 38 1 2 84 26 95 1.97e-13 66.2
MS.gene23229.t1 MTR_1g035510 42.857 84 45 2 1 84 1 81 2.13e-13 68.6
MS.gene23229.t1 MTR_1g034210 37.349 83 50 1 2 84 23 103 2.74e-13 69.7
MS.gene23229.t1 MTR_1g021320 36.000 75 48 0 2 76 198 272 5.54e-12 66.6
MS.gene23229.t1 MTR_1g021320 29.146 199 122 7 79 271 409 594 2.60e-11 64.7
MS.gene23229.t1 MTR_1g035500 41.667 84 46 2 1 84 40 120 6.21e-12 63.5
MS.gene23229.t1 MTR_1g035650 28.358 201 114 7 2 194 25 203 7.34e-12 63.9
MS.gene23229.t1 MTR_1g021440 36.000 75 48 0 2 76 38 112 2.58e-11 63.5
MS.gene23229.t1 MTR_1g021440 36.000 75 48 0 2 76 38 112 3.13e-11 63.2
MS.gene23229.t1 MTR_1g035490 34.711 121 72 4 161 279 81 196 3.25e-11 63.5
MS.gene23229.t1 MTR_1g033740 36.170 94 57 2 1 94 37 127 3.45e-11 61.6
MS.gene23229.t1 MTR_1g021290 34.177 79 52 0 2 80 171 249 4.03e-11 63.2
MS.gene23229.t1 MTR_1g021440 36.000 75 48 0 2 76 38 112 4.84e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene23229.t1 AT3G18990 28.097 331 175 10 2 282 22 339 5.35e-30 117
MS.gene23229.t1 AT3G18990 28.049 328 173 10 2 279 22 336 7.97e-30 115
MS.gene23229.t1 AT4G01580 45.455 88 48 0 2 89 46 133 2.43e-19 84.3
MS.gene23229.t1 AT4G33280 27.063 303 190 11 1 286 38 326 2.07e-18 84.3
MS.gene23229.t1 AT1G49475 44.186 86 47 1 2 87 50 134 2.30e-18 81.6
MS.gene23229.t1 AT3G18960 44.318 88 49 0 2 89 46 133 3.88e-18 80.9
MS.gene23229.t1 AT3G18960 44.318 88 49 0 2 89 46 133 4.84e-18 81.3
MS.gene23229.t1 AT3G18960 44.318 88 49 0 2 89 9 96 6.34e-18 80.1

Find 48 sgRNAs with CRISPR-Local

Find 84 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCATCAACCACGTGAAAT+TGG 0.226817 7.2:-52504007 MS.gene23229:CDS
TATTTCTCTACAAACTTTCT+TGG 0.243867 7.2:+52504367 None:intergenic
TGCAAAGTGGAAATTAAATT+TGG 0.244297 7.2:-52504299 MS.gene23229:CDS
GTCTTTAGATGTATATCTTT+TGG 0.284772 7.2:+52504331 None:intergenic
TGACTTGGAGGTTTATTTCC+TGG 0.302661 7.2:+52504076 None:intergenic
GAAAGGGTAATTTATCTCTA+AGG 0.313872 7.2:+52504138 None:intergenic
AGAAAGTTTGTAGAGAAATA+TGG 0.315950 7.2:-52504364 MS.gene23229:CDS
AATTTCCACTTTGCACCATT+TGG 0.355722 7.2:+52504307 None:intergenic
TTCAAATTGTAGTCCGTTAC+GGG 0.357490 7.2:+52503021 None:intergenic
AGGTGTTAAATAAAGGAGTT+TGG 0.387066 7.2:-52503069 MS.gene23229:CDS
TGGTAATAGACACTTTGATT+TGG 0.391800 7.2:-52503119 MS.gene23229:CDS
TGGCAAAATATGGTTTGAAA+AGG 0.393696 7.2:-52504266 MS.gene23229:CDS
CAGAATATACCACGTATGTT+TGG 0.412403 7.2:-52503139 MS.gene23229:CDS
GGCCTGAAAAGTACTCTATC+AGG 0.436391 7.2:-52503048 MS.gene23229:CDS
AAATATGGTTTGAAAAGGGT+TGG 0.440218 7.2:-52504261 MS.gene23229:CDS
TTTCAAATTGTAGTCCGTTA+CGG 0.442201 7.2:+52503020 None:intergenic
GATATTTGAAAAGCAGAAGA+TGG 0.444393 7.2:+52504203 None:intergenic
CTACAATGTTCATGACTTGG+AGG 0.457504 7.2:+52504064 None:intergenic
GGCAAAATATGGTTTGAAAA+GGG 0.493730 7.2:-52504265 MS.gene23229:CDS
ATACATCTAAAGACTCCAAA+TGG 0.498833 7.2:-52504322 MS.gene23229:CDS
AGGTTTATTTCCTGGACCAT+TGG 0.500614 7.2:+52504084 None:intergenic
TTGCTGCAACTCTTTGGAAA+GGG 0.508052 7.2:+52504122 None:intergenic
TTTGTAGAGAAATATGGAGA+AGG 0.519534 7.2:-52504358 MS.gene23229:CDS
TCTAAAGATATGAACAATGA+AGG 0.522026 7.2:+52502907 None:intergenic
GCTCTACAATGTTCATGACT+TGG 0.532180 7.2:+52504061 None:intergenic
TGAAATCACCGGTGGATGGA+AGG 0.538102 7.2:-52503002 MS.gene23229:CDS
TAGAGCATCTCAAAAGAGAA+AGG 0.538111 7.2:-52504044 MS.gene23229:CDS
TACAAATGCCTTCCATCCAC+CGG 0.542483 7.2:+52502994 None:intergenic
AATAGGGTCTCCAATGGTCC+AGG 0.542970 7.2:-52504094 MS.gene23229:CDS
TTTGCTGCAACTCTTTGGAA+AGG 0.544509 7.2:+52504121 None:intergenic
ACGTGGTTGATGAAATTCAA+AGG 0.544951 7.2:+52504015 None:intergenic
CGCATGACAACAACAAAGGA+TGG 0.548509 7.2:+52503739 None:intergenic
AAGGACCACAACTTGAAAGT+TGG 0.549394 7.2:-52502971 MS.gene23229:CDS
CATCGCCAACTTTCAAGTTG+TGG 0.551971 7.2:+52502966 None:intergenic
TAGAGTTGGTAAACTGCAGA+AGG 0.555724 7.2:-52503969 MS.gene23229:CDS
GAGTATCACTCTCTAGCTCA+TGG 0.575939 7.2:-52504226 MS.gene23229:CDS
TTTGATTTGGATAAGAAGAG+AGG 0.576081 7.2:-52503106 MS.gene23229:CDS
TGGATGGAAGGCATTTGTAA+AGG 0.581014 7.2:-52502990 MS.gene23229:CDS
GGACTACAATTTGAAATCAC+CGG 0.593914 7.2:-52503013 MS.gene23229:CDS
AATTTGAAATCACCGGTGGA+TGG 0.596243 7.2:-52503006 MS.gene23229:CDS
CTACTGCTTCCAATTTCACG+TGG 0.605958 7.2:+52503998 None:intergenic
TCTATCAGGAAGACCCGTAA+CGG 0.616361 7.2:-52503034 MS.gene23229:CDS
AGACTCCAAATGGTGCAAAG+TGG 0.616755 7.2:-52504312 MS.gene23229:CDS
AAAACTAATAGGGTCTCCAA+TGG 0.643575 7.2:-52504100 MS.gene23229:CDS
CTACAATTTGAAATCACCGG+TGG 0.665478 7.2:-52503010 MS.gene23229:CDS
TGCACGCATGACAACAACAA+AGG 0.693553 7.2:+52503735 None:intergenic
CATACTGACAGAGAGTCCAA+AGG 0.719746 7.2:-52503932 MS.gene23229:intron
TGTCTATTACCAAACATACG+TGG 0.737084 7.2:+52503130 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTAAGTTACAATGAAATATA+TGG - chr7.2:52503541-52503560 MS.gene23229:intron 20.0%
!! TTAAATTTGGTAAAAAGTGA+TGG - chr7.2:52502940-52502959 MS.gene23229:CDS 20.0%
!!! ACATTGTCTTTTCTTTTAAT+TGG - chr7.2:52504064-52504083 MS.gene23229:CDS 20.0%
!!! TATTTTCAGGTGTTAAATAA+AGG - chr7.2:52504150-52504169 MS.gene23229:CDS 20.0%
! AGAAAGTTTGTAGAGAAATA+TGG - chr7.2:52502862-52502881 MS.gene23229:CDS 25.0%
! ATATAATCAAGAGTTGTTAG+AGG - chr7.2:52503677-52503696 MS.gene23229:intron 25.0%
! TAAAAAGTGATGGCAAAATA+TGG - chr7.2:52502950-52502969 MS.gene23229:CDS 25.0%
! TATTTCTCTACAAACTTTCT+TGG + chr7.2:52502862-52502881 None:intergenic 25.0%
! TCTAAAGATATGAACAATGA+AGG + chr7.2:52504322-52504341 None:intergenic 25.0%
! TGCAAAGTGGAAATTAAATT+TGG - chr7.2:52502927-52502946 MS.gene23229:CDS 25.0%
!! GTCTTTAGATGTATATCTTT+TGG + chr7.2:52502898-52502917 None:intergenic 25.0%
!!! ACTTAGTTGATTAGTTTGTT+AGG - chr7.2:52503704-52503723 MS.gene23229:intron 25.0%
AAATATGGTTTGAAAAGGGT+TGG - chr7.2:52502965-52502984 MS.gene23229:CDS 30.0%
AAGACACAATCTTATACCTT+TGG + chr7.2:52503313-52503332 None:intergenic 30.0%
AAGTATTTGAATAACGCTTG+AGG - chr7.2:52503766-52503785 MS.gene23229:CDS 30.0%
AGGTGTTAAATAAAGGAGTT+TGG - chr7.2:52504157-52504176 MS.gene23229:CDS 30.0%
AGTATTTGAATAACGCTTGA+GGG - chr7.2:52503767-52503786 MS.gene23229:CDS 30.0%
AGTTGCAGCAAAAACTAATA+GGG - chr7.2:52503116-52503135 MS.gene23229:CDS 30.0%
ATACATCTAAAGACTCCAAA+TGG - chr7.2:52502904-52502923 MS.gene23229:CDS 30.0%
CTCTACTCTTTACTAGATTA+AGG - chr7.2:52503590-52503609 MS.gene23229:intron 30.0%
GAAAGGGTAATTTATCTCTA+AGG + chr7.2:52503091-52503110 None:intergenic 30.0%
GATATTTGAAAAGCAGAAGA+TGG + chr7.2:52503026-52503045 None:intergenic 30.0%
GGCAAAATATGGTTTGAAAA+GGG - chr7.2:52502961-52502980 MS.gene23229:CDS 30.0%
GTAAAGAGTAGAGAAAGATT+TGG + chr7.2:52503583-52503602 None:intergenic 30.0%
TGCAAAATTGGAACACAATA+AGG + chr7.2:52503398-52503417 None:intergenic 30.0%
TGGCAAAATATGGTTTGAAA+AGG - chr7.2:52502960-52502979 MS.gene23229:CDS 30.0%
TGGTAATAGACACTTTGATT+TGG - chr7.2:52504107-52504126 MS.gene23229:CDS 30.0%
TTTCAAATTGTAGTCCGTTA+CGG + chr7.2:52504209-52504228 None:intergenic 30.0%
TTTGTAGAGAAATATGGAGA+AGG - chr7.2:52502868-52502887 MS.gene23229:CDS 30.0%
! TAATCTTGATGTCACTTGTT+AGG + chr7.2:52503947-52503966 None:intergenic 30.0%
! TATTGTGTTCCAATTTTGCA+GGG - chr7.2:52503398-52503417 MS.gene23229:intron 30.0%
! TTATTGTGTTCCAATTTTGC+AGG - chr7.2:52503397-52503416 MS.gene23229:intron 30.0%
!! GAGAGGAGATATTTATTTTC+AGG - chr7.2:52504137-52504156 MS.gene23229:CDS 30.0%
!! TAGTTTGTTAGGTGATTGAT+AGG - chr7.2:52503715-52503734 MS.gene23229:CDS 30.0%
!! TTTGATTTGGATAAGAAGAG+AGG - chr7.2:52504120-52504139 MS.gene23229:CDS 30.0%
AAAACTAATAGGGTCTCCAA+TGG - chr7.2:52503126-52503145 MS.gene23229:CDS 35.0%
AATTTCCACTTTGCACCATT+TGG + chr7.2:52502922-52502941 None:intergenic 35.0%
CAGAATATACCACGTATGTT+TGG - chr7.2:52504087-52504106 MS.gene23229:CDS 35.0%
GAGTTGCAGCAAAAACTAAT+AGG - chr7.2:52503115-52503134 MS.gene23229:CDS 35.0%
GTTCAACTATGTATGCACTA+AGG - chr7.2:52503645-52503664 MS.gene23229:intron 35.0%
TGTCTATTACCAAACATACG+TGG + chr7.2:52504099-52504118 None:intergenic 35.0%
TTCAAATTGTAGTCCGTTAC+GGG + chr7.2:52504208-52504227 None:intergenic 35.0%
TTTCATCAACCACGTGAAAT+TGG - chr7.2:52503219-52503238 MS.gene23229:intron 35.0%
! GGACTACAATTTGAAATCAC+CGG - chr7.2:52504213-52504232 MS.gene23229:CDS 35.0%
! TAGAGCATCTCAAAAGAGAA+AGG - chr7.2:52503182-52503201 MS.gene23229:intron 35.0%
! TAGTTTTTGCTGCAACTCTT+TGG + chr7.2:52503113-52503132 None:intergenic 35.0%
!! ACGTGGTTGATGAAATTCAA+AGG + chr7.2:52503214-52503233 None:intergenic 35.0%
!! TTCCTGATAGAGTACTTTTC+AGG + chr7.2:52504183-52504202 None:intergenic 35.0%
!!! AGCAGTAGTTGTTTTAGAGT+TGG - chr7.2:52503243-52503262 MS.gene23229:intron 35.0%
AAGGACCACAACTTGAAAGT+TGG - chr7.2:52504255-52504274 MS.gene23229:CDS 40.0%
AGGTTTATTTCCTGGACCAT+TGG + chr7.2:52503145-52503164 None:intergenic 40.0%
CACTTCTTTCCCTGCAAAAT+TGG + chr7.2:52503410-52503429 None:intergenic 40.0%
GCTCTACAATGTTCATGACT+TGG + chr7.2:52503168-52503187 None:intergenic 40.0%
TAGGATTGTCCATTTGAGCT+GGG + chr7.2:52503928-52503947 None:intergenic 40.0%
TTAGGATTGTCCATTTGAGC+TGG + chr7.2:52503929-52503948 None:intergenic 40.0%
TTGAATAACGCTTGAGGGAA+GGG - chr7.2:52503772-52503791 MS.gene23229:CDS 40.0%
TTTGAATAACGCTTGAGGGA+AGG - chr7.2:52503771-52503790 MS.gene23229:CDS 40.0%
! AATTTGAAATCACCGGTGGA+TGG - chr7.2:52504220-52504239 MS.gene23229:CDS 40.0%
! CTACAATGTTCATGACTTGG+AGG + chr7.2:52503165-52503184 None:intergenic 40.0%
! CTACAATTTGAAATCACCGG+TGG - chr7.2:52504216-52504235 MS.gene23229:CDS 40.0%
! TGACTTGGAGGTTTATTTCC+TGG + chr7.2:52503153-52503172 None:intergenic 40.0%
! TTGCTGCAACTCTTTGGAAA+GGG + chr7.2:52503107-52503126 None:intergenic 40.0%
! TTTGCTGCAACTCTTTGGAA+AGG + chr7.2:52503108-52503127 None:intergenic 40.0%
!! CGTTGATCGTCATTTTCTAC+TGG - chr7.2:52503519-52503538 MS.gene23229:intron 40.0%
!! TAGAGTTGGTAAACTGCAGA+AGG - chr7.2:52503257-52503276 MS.gene23229:intron 40.0%
!! TGGATGGAAGGCATTTGTAA+AGG - chr7.2:52504236-52504255 MS.gene23229:CDS 40.0%
AGACTCCAAATGGTGCAAAG+TGG - chr7.2:52502914-52502933 MS.gene23229:CDS 45.0%
ATTGCTCAACAGGGAACAGT+TGG + chr7.2:52503901-52503920 None:intergenic 45.0%
CATACTGACAGAGAGTCCAA+AGG - chr7.2:52503294-52503313 MS.gene23229:intron 45.0%
CGCATGACAACAACAAAGGA+TGG + chr7.2:52503490-52503509 None:intergenic 45.0%
CTACTGCTTCCAATTTCACG+TGG + chr7.2:52503231-52503250 None:intergenic 45.0%
TACAAATGCCTTCCATCCAC+CGG + chr7.2:52504235-52504254 None:intergenic 45.0%
TCTATCAGGAAGACCCGTAA+CGG - chr7.2:52504192-52504211 MS.gene23229:CDS 45.0%
TGAATAACGCTTGAGGGAAG+GGG - chr7.2:52503773-52503792 MS.gene23229:CDS 45.0%
TGCACGCATGACAACAACAA+AGG + chr7.2:52503494-52503513 None:intergenic 45.0%
! CAGGGAACAGTTGGTATCAA+CGG + chr7.2:52503892-52503911 None:intergenic 45.0%
! GAGTATCACTCTCTAGCTCA+TGG - chr7.2:52503000-52503019 MS.gene23229:CDS 45.0%
!! CATCGCCAACTTTCAAGTTG+TGG + chr7.2:52504263-52504282 None:intergenic 45.0%
!! GGCCTGAAAAGTACTCTATC+AGG - chr7.2:52504178-52504197 MS.gene23229:CDS 45.0%
AATAGGGTCTCCAATGGTCC+AGG - chr7.2:52503132-52503151 MS.gene23229:CDS 50.0%
CTGGGCACAATTGCTCAACA+GGG + chr7.2:52503910-52503929 None:intergenic 50.0%
GCAATTGTGCCCAGCTCAAA+TGG - chr7.2:52503916-52503935 MS.gene23229:intron 50.0%
TGAAATCACCGGTGGATGGA+AGG - chr7.2:52504224-52504243 MS.gene23229:CDS 50.0%
GCTGGGCACAATTGCTCAAC+AGG + chr7.2:52503911-52503930 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 52502853 52504395 52502853 ID=MS.gene23229
chr7.2 mRNA 52502853 52504395 52502853 ID=MS.gene23229.t1;Parent=MS.gene23229
chr7.2 exon 52503933 52504395 52503933 ID=MS.gene23229.t1.exon1;Parent=MS.gene23229.t1
chr7.2 CDS 52503933 52504395 52503933 ID=cds.MS.gene23229.t1;Parent=MS.gene23229.t1
chr7.2 exon 52503708 52503829 52503708 ID=MS.gene23229.t1.exon2;Parent=MS.gene23229.t1
chr7.2 CDS 52503708 52503829 52503708 ID=cds.MS.gene23229.t1;Parent=MS.gene23229.t1
chr7.2 exon 52502853 52503158 52502853 ID=MS.gene23229.t1.exon3;Parent=MS.gene23229.t1
chr7.2 CDS 52502853 52503158 52502853 ID=cds.MS.gene23229.t1;Parent=MS.gene23229.t1
Gene Sequence

>MS.gene23229

ATGATGCCAAGAAAGTTTGTAGAGAAATATGGAGAAGGTTTACCAAAAGATATACATCTAAAGACTCCAAATGGTGCAAAGTGGAAATTAAATTTGGTAAAAAGTGATGGCAAAATATGGTTTGAAAAGGGTTGGAAAGAATTTGCAGAGTATCACTCTCTAGCTCATGGCCATCTTCTGCTTTTCAAATATCAAAGAAATACTCATTTTCTTGTGCACATCTTTGAAAAGAGTGCCTTAGAGATAAATTACCCTTTCCAAAGAGTTGCAGCAAAAACTAATAGGGTCTCCAATGGTCCAGGAAATAAACCTCCAAGTCATGAACATTGTAGAGCATCTCAAAAGAGAAAGGTTAACTCCTTTGAATTTCATCAACCACGTGAAATTGGAAGCAGTAGTTGTTTTAGAGTTGGTAAACTGCAGAAGGTAGCATCATTGCATCATACTGACAGAGAGTCCAAAGGTATAAGATTGTGTCTTCATTGTGTCATCAAAGTTTCAGAAGTGAACATGAAAGATGATCATGATTCATGAAATATTATCCTTATTGTGTTCCAATTTTGCAGGGAAAGAAGTGATTACTGCTAAGAGAGTTACAGCTCTTGAAAGAGCACAATCTTTCAAAACATGTAATCCATCCTTTGTTGTTGTCATGCGTGCATCATACGTTGATCGTCATTTTCTACTGGTAAGTTACAATGAAATATATGGCTTGTAGAATCAATAACCAAATCTTTCTCTACTCTTTACTAGATTAAGGCGTGAGAAATATATATTGACTATCTAAAAATAGTTCAACTATGTATGCACTAAGGATAATTAGAATATAATCAAGAGTTGTTAGAGGAGTTACTTAGTTGATTAGTTTGTTAGGTGATTGATAGGTTCTGTTGTTATTTTGTTTATTCTCGACAAGTATTTGAATAACGCTTGAGGGAAGGGGATAATTTTGATTAAACGAGTTTTGTGACTGATTAATACATATTTTCGATCTTGATTAATACATGTTTTCTGTTTTCTTTCTCTTTTCATCTTTCCGTTGATACCAACTGTTCCCTGTTGAGCAATTGTGCCCAGCTCAAATGGACAATCCTAACAAGTGACATCAAGATTAGATAAACGTACAAAAACACTGCTAATGCATAGTTCTTCACATTAAATCGTTTAAAAAATCGTACTATCAACAAGAACTTTCAATTTTTTATTCATTAACATTGTCTTTTCTTTTAATTGGCAGAATATACCACGTATGTTTGGTAATAGACACTTTGATTTGGATAAGAAGAGAGGAGATATTTATTTTCAGGTGTTAAATAAAGGAGTTTGGCCTGAAAAGTACTCTATCAGGAAGACCCGTAACGGACTACAATTTGAAATCACCGGTGGATGGAAGGCATTTGTAAAGGACCACAACTTGAAAGTTGGCGATGTTTGCAAATTTGAACTCATCTCTAGCACTATACTTACCTTCATTGTTCATATCTTTAGAGATACAGACAATGACAGCACAAAGTGTTCAACTTCTCAAAGTAGAATCAATTGA
Protein sequence

>MS.gene23229.t1

MMPRKFVEKYGEGLPKDIHLKTPNGAKWKLNLVKSDGKIWFEKGWKEFAEYHSLAHGHLLLFKYQRNTHFLVHIFEKSALEINYPFQRVAAKTNRVSNGPGNKPPSHEHCRASQKRKVNSFEFHQPREIGSSSCFRVGKLQKVASLHHTDRESKGKEVITAKRVTALERAQSFKTCNPSFVVVMRASYVDRHFLLNIPRMFGNRHFDLDKKRGDIYFQVLNKGVWPEKYSIRKTRNGLQFEITGGWKAFVKDHNLKVGDVCKFELISSTILTFIVHIFRDTDNDSTKCSTSQSRIN